test_class.file: tool/pcore/src/test/java/org/openscience/cdk/pharmacophore/PharmacophoreQueryAtomTest.java
test_class.identifier: PharmacophoreQueryAtomTest
test_case.body: @Test
      public void testToString() {
          PharmacophoreQueryAtom qatom = new PharmacophoreQueryAtom("aromatic", "c1ccccc1");
          String repr = qatom.toString();
          Assert.assertEquals("aromatic [c1ccccc1]", repr);
      }
test_case.class_method_signature: PharmacophoreQueryAtomTest.testToString()
test_case.full_signature: @Test public void testToString()
test_case.identifier: testToString
test_case.invocations: toString assertEquals
test_case.modifiers: @Test public
test_case.parameters: ()
test_case.return: void
test_case.signature: void testToString()
focal_class.declarator: smarts
focal_class.modifier: private
focal_class.original_string: private String smarts;
focal_class.type: String
focal_class.var_name: smarts
focal_class.declarator: compiledSmarts
focal_class.modifier: private
focal_class.original_string: private SmartsPattern[] compiledSmarts;
focal_class.type: SmartsPattern[]
focal_class.var_name: compiledSmarts
focal_class.declarator: symbol
focal_class.modifier: private
focal_class.original_string: private String symbol;
focal_class.type: String
focal_class.var_name: symbol
focal_class.file: tool/pcore/src/main/java/org/openscience/cdk/pharmacophore/PharmacophoreQueryAtom.java
focal_class.identifier: PharmacophoreQueryAtom
focal_class.interfaces: implements IQueryAtom
focal_class.class_method_signature: PharmacophoreQueryAtom.PharmacophoreQueryAtom(String symbol, String smarts)
focal_class.full_signature: public  PharmacophoreQueryAtom(String symbol, String smarts)
focal_class.identifier: PharmacophoreQueryAtom
focal_class.modifiers: public
focal_class.parameters: (String symbol, String smarts)
focal_class.signature:  PharmacophoreQueryAtom(String symbol, String smarts)
focal_class.class_method_signature: PharmacophoreQueryAtom.getSymbol()
focal_class.full_signature: @Override public String getSymbol()
focal_class.identifier: getSymbol
focal_class.modifiers: @Override public
focal_class.parameters: ()
focal_class.return: String
focal_class.signature: String getSymbol()
focal_class.class_method_signature: PharmacophoreQueryAtom.setSymbol(String symbol)
focal_class.full_signature: @Override public void setSymbol(String symbol)
focal_class.identifier: setSymbol
focal_class.modifiers: @Override public
focal_class.parameters: (String symbol)
focal_class.return: void
focal_class.signature: void setSymbol(String symbol)
focal_class.class_method_signature: PharmacophoreQueryAtom.getSmarts()
focal_class.full_signature: public String getSmarts()
focal_class.identifier: getSmarts
focal_class.modifiers: public
focal_class.parameters: ()
focal_class.return: String
focal_class.signature: String getSmarts()
focal_class.class_method_signature: PharmacophoreQueryAtom.getCompiledSmarts()
focal_class.full_signature:  SmartsPattern[] getCompiledSmarts()
focal_class.identifier: getCompiledSmarts
focal_class.parameters: ()
focal_class.return: SmartsPattern[]
focal_class.signature: SmartsPattern[] getCompiledSmarts()
focal_class.class_method_signature: PharmacophoreQueryAtom.matches(IAtom atom)
focal_class.full_signature: @Override public boolean matches(IAtom atom)
focal_class.identifier: matches
focal_class.modifiers: @Override public
focal_class.parameters: (IAtom atom)
focal_class.return: boolean
focal_class.signature: boolean matches(IAtom atom)
focal_class.class_method_signature: PharmacophoreQueryAtom.toString()
focal_class.full_signature: @Override public String toString()
focal_class.identifier: toString
focal_class.modifiers: @Override public
focal_class.parameters: ()
focal_class.return: String
focal_class.signature: String toString()
focal_class.superclass: extends Atom
focal_method.body: @Override
      public String toString() {
          StringBuffer s = new StringBuffer();
          s.append(getSymbol()).append(" [").append(getSmarts()).append(']');
          return s.toString();
      }
focal_method.class_method_signature: PharmacophoreQueryAtom.toString()
focal_method.full_signature: @Override public String toString()
focal_method.identifier: toString
focal_method.invocations: append append append append getSymbol getSmarts toString
focal_method.modifiers: @Override public
focal_method.parameters: ()
focal_method.return: String
focal_method.signature: String toString()