test_class.declarator: factory
test_class.modifier: protected static
test_class.original_string: protected static InChIGeneratorFactory factory;
test_class.type: InChIGeneratorFactory
test_class.var_name: factory
test_class.file: storage/inchi/src/test/java/org/openscience/cdk/inchi/InChIGeneratorTest.java
test_class.identifier: InChIGeneratorTest
test_class.superclass: extends CDKTestCase
test_case.body: @Test
      public void testGetWarningMessage() throws Exception {
          IAtomContainer ac = new AtomContainer();
          ac.addAtom(new Atom("Cl"));
          ac.addAtom(new Atom("H"));
          ac.addBond(0, 1, Order.TRIPLE);
          InChIGenerator gen = getFactory().getInChIGenerator(ac);
          Assert.assertNotNull(gen.getMessage());
          Assert.assertTrue(gen.getMessage().contains("Accepted unusual valence"));
      }
test_case.class_method_signature: InChIGeneratorTest.testGetWarningMessage()
test_case.full_signature: @Test public void testGetWarningMessage()
test_case.identifier: testGetWarningMessage
test_case.invocations: addAtom addAtom addBond getInChIGenerator getFactory assertNotNull getMessage assertTrue contains getMessage
test_case.modifiers: @Test public
test_case.parameters: ()
test_case.return: void
test_case.signature: void testGetWarningMessage()
focal_class.declarator: input
focal_class.modifier: protected
focal_class.original_string: protected JniInchiInput input;
focal_class.type: JniInchiInput
focal_class.var_name: input
focal_class.declarator: output
focal_class.modifier: protected
focal_class.original_string: protected JniInchiOutput output;
focal_class.type: JniInchiOutput
focal_class.var_name: output
focal_class.declarator: auxNone
focal_class.modifier: private final
focal_class.original_string: private final boolean auxNone;
focal_class.type: boolean
focal_class.var_name: auxNone
focal_class.declarator: LOGGER = LoggingToolFactory.createLoggingTool(InChIGenerator.class)
focal_class.modifier: private static final
focal_class.original_string: private static final ILoggingTool LOGGER = LoggingToolFactory.createLoggingTool(InChIGenerator.class);
focal_class.type: ILoggingTool
focal_class.var_name: LOGGER
focal_class.declarator: atomContainer
focal_class.modifier: protected
focal_class.original_string: protected IAtomContainer atomContainer;
focal_class.type: IAtomContainer
focal_class.var_name: atomContainer
focal_class.file: storage/inchi/src/main/java/org/openscience/cdk/inchi/InChIGenerator.java
focal_class.identifier: InChIGenerator
focal_class.class_method_signature: InChIGenerator.InChIGenerator(IAtomContainer atomContainer, boolean ignoreAromaticBonds)
focal_class.full_signature: protected  InChIGenerator(IAtomContainer atomContainer, boolean ignoreAromaticBonds)
focal_class.identifier: InChIGenerator
focal_class.modifiers: protected
focal_class.parameters: (IAtomContainer atomContainer, boolean ignoreAromaticBonds)
focal_class.signature:  InChIGenerator(IAtomContainer atomContainer, boolean ignoreAromaticBonds)
focal_class.class_method_signature: InChIGenerator.InChIGenerator(IAtomContainer atomContainer, String options, boolean ignoreAromaticBonds)
focal_class.full_signature: protected  InChIGenerator(IAtomContainer atomContainer, String options, boolean ignoreAromaticBonds)
focal_class.identifier: InChIGenerator
focal_class.modifiers: protected
focal_class.parameters: (IAtomContainer atomContainer, String options, boolean ignoreAromaticBonds)
focal_class.signature:  InChIGenerator(IAtomContainer atomContainer, String options, boolean ignoreAromaticBonds)
focal_class.class_method_signature: InChIGenerator.InChIGenerator(IAtomContainer atomContainer, List<INCHI_OPTION> options, boolean ignoreAromaticBonds)
focal_class.full_signature: protected  InChIGenerator(IAtomContainer atomContainer, List<INCHI_OPTION> options, boolean ignoreAromaticBonds)
focal_class.identifier: InChIGenerator
focal_class.modifiers: protected
focal_class.parameters: (IAtomContainer atomContainer, List<INCHI_OPTION> options, boolean ignoreAromaticBonds)
focal_class.signature:  InChIGenerator(IAtomContainer atomContainer, List<INCHI_OPTION> options, boolean ignoreAromaticBonds)
focal_class.class_method_signature: InChIGenerator.generateInchiFromCDKAtomContainer(IAtomContainer atomContainer, boolean ignore)
focal_class.full_signature: private void generateInchiFromCDKAtomContainer(IAtomContainer atomContainer, boolean ignore)
focal_class.identifier: generateInchiFromCDKAtomContainer
focal_class.modifiers: private
focal_class.parameters: (IAtomContainer atomContainer, boolean ignore)
focal_class.return: void
focal_class.signature: void generateInchiFromCDKAtomContainer(IAtomContainer atomContainer, boolean ignore)
focal_class.class_method_signature: InChIGenerator.onlySingleBonded(List<IBond> bonds)
focal_class.full_signature: private static List<IBond> onlySingleBonded(List<IBond> bonds)
focal_class.identifier: onlySingleBonded
focal_class.modifiers: private static
focal_class.parameters: (List<IBond> bonds)
focal_class.return: List<IBond>
focal_class.signature: List<IBond> onlySingleBonded(List<IBond> bonds)
focal_class.class_method_signature: InChIGenerator.swap(Object[] objs, int i, int j)
focal_class.full_signature: private static void swap(Object[] objs, int i, int j)
focal_class.identifier: swap
focal_class.modifiers: private static
focal_class.parameters: (Object[] objs, int i, int j)
focal_class.return: void
focal_class.signature: void swap(Object[] objs, int i, int j)
focal_class.class_method_signature: InChIGenerator.getReturnStatus()
focal_class.full_signature: public INCHI_RET getReturnStatus()
focal_class.identifier: getReturnStatus
focal_class.modifiers: public
focal_class.parameters: ()
focal_class.return: INCHI_RET
focal_class.signature: INCHI_RET getReturnStatus()
focal_class.class_method_signature: InChIGenerator.getInchi()
focal_class.full_signature: public String getInchi()
focal_class.identifier: getInchi
focal_class.modifiers: public
focal_class.parameters: ()
focal_class.return: String
focal_class.signature: String getInchi()
focal_class.class_method_signature: InChIGenerator.getInchiKey()
focal_class.full_signature: public String getInchiKey()
focal_class.identifier: getInchiKey
focal_class.modifiers: public
focal_class.parameters: ()
focal_class.return: String
focal_class.signature: String getInchiKey()
focal_class.class_method_signature: InChIGenerator.getAuxInfo()
focal_class.full_signature: public String getAuxInfo()
focal_class.identifier: getAuxInfo
focal_class.modifiers: public
focal_class.parameters: ()
focal_class.return: String
focal_class.signature: String getAuxInfo()
focal_class.class_method_signature: InChIGenerator.getMessage()
focal_class.full_signature: public String getMessage()
focal_class.identifier: getMessage
focal_class.modifiers: public
focal_class.parameters: ()
focal_class.return: String
focal_class.signature: String getMessage()
focal_class.class_method_signature: InChIGenerator.getLog()
focal_class.full_signature: public String getLog()
focal_class.identifier: getLog
focal_class.modifiers: public
focal_class.parameters: ()
focal_class.return: String
focal_class.signature: String getLog()
focal_method.body: public String getMessage() {
          return (output.getMessage());
      }
focal_method.class_method_signature: InChIGenerator.getMessage()
focal_method.full_signature: public String getMessage()
focal_method.identifier: getMessage
focal_method.invocations: getMessage
focal_method.modifiers: public
focal_method.parameters: ()
focal_method.return: String
focal_method.signature: String getMessage()