test_class.file: storage/io/src/test/java/org/openscience/cdk/io/Gaussian98ReaderTest.java
test_class.identifier: Gaussian98ReaderTest
test_class.superclass: extends SimpleChemObjectReaderTest
test_case.body: @Test
      public void testAccepts() {
          Assert.assertTrue(chemObjectIO.accepts(ChemFile.class));
      }
test_case.class_method_signature: Gaussian98ReaderTest.testAccepts()
test_case.full_signature: @Test public void testAccepts()
test_case.identifier: testAccepts
test_case.invocations: assertTrue accepts
test_case.modifiers: @Test public
test_case.parameters: ()
test_case.return: void
test_case.signature: void testAccepts()
focal_class.declarator: input
focal_class.modifier: private
focal_class.original_string: private BufferedReader      input;
focal_class.type: BufferedReader
focal_class.var_name: input
focal_class.declarator: logger    = LoggingToolFactory.createLoggingTool(Gaussian98Reader.class)
focal_class.modifier: private static
focal_class.original_string: private static ILoggingTool logger    = LoggingToolFactory.createLoggingTool(Gaussian98Reader.class);
focal_class.type: ILoggingTool
focal_class.var_name: logger
focal_class.declarator: atomCount = 0
focal_class.modifier: private
focal_class.original_string: private int                 atomCount = 0;
focal_class.type: int
focal_class.var_name: atomCount
focal_class.declarator: lastRoute = ""
focal_class.modifier: private
focal_class.original_string: private String              lastRoute = "";
focal_class.type: String
focal_class.var_name: lastRoute
focal_class.declarator: readOptimizedStructureOnly
focal_class.modifier: private
focal_class.original_string: private BooleanIOSetting    readOptimizedStructureOnly;
focal_class.type: BooleanIOSetting
focal_class.var_name: readOptimizedStructureOnly
focal_class.file: storage/io/src/main/java/org/openscience/cdk/io/Gaussian98Reader.java
focal_class.identifier: Gaussian98Reader
focal_class.class_method_signature: Gaussian98Reader.Gaussian98Reader()
focal_class.full_signature: public  Gaussian98Reader()
focal_class.identifier: Gaussian98Reader
focal_class.modifiers: public
focal_class.parameters: ()
focal_class.signature:  Gaussian98Reader()
focal_class.class_method_signature: Gaussian98Reader.Gaussian98Reader(InputStream input)
focal_class.full_signature: public  Gaussian98Reader(InputStream input)
focal_class.identifier: Gaussian98Reader
focal_class.modifiers: public
focal_class.parameters: (InputStream input)
focal_class.signature:  Gaussian98Reader(InputStream input)
focal_class.class_method_signature: Gaussian98Reader.getFormat()
focal_class.full_signature: @Override public IResourceFormat getFormat()
focal_class.identifier: getFormat
focal_class.modifiers: @Override public
focal_class.parameters: ()
focal_class.return: IResourceFormat
focal_class.signature: IResourceFormat getFormat()
focal_class.class_method_signature: Gaussian98Reader.setReader(Reader input)
focal_class.full_signature: @Override public void setReader(Reader input)
focal_class.identifier: setReader
focal_class.modifiers: @Override public
focal_class.parameters: (Reader input)
focal_class.return: void
focal_class.signature: void setReader(Reader input)
focal_class.class_method_signature: Gaussian98Reader.setReader(InputStream input)
focal_class.full_signature: @Override public void setReader(InputStream input)
focal_class.identifier: setReader
focal_class.modifiers: @Override public
focal_class.parameters: (InputStream input)
focal_class.return: void
focal_class.signature: void setReader(InputStream input)
focal_class.class_method_signature: Gaussian98Reader.Gaussian98Reader(Reader input)
focal_class.full_signature: public  Gaussian98Reader(Reader input)
focal_class.identifier: Gaussian98Reader
focal_class.modifiers: public
focal_class.parameters: (Reader input)
focal_class.signature:  Gaussian98Reader(Reader input)
focal_class.class_method_signature: Gaussian98Reader.accepts(Class<? extends IChemObject> classObject)
focal_class.full_signature: @Override public boolean accepts(Class<? extends IChemObject> classObject)
focal_class.identifier: accepts
focal_class.modifiers: @Override public
focal_class.parameters: (Class<? extends IChemObject> classObject)
focal_class.return: boolean
focal_class.signature: boolean accepts(Class<? extends IChemObject> classObject)
focal_class.class_method_signature: Gaussian98Reader.read(T object)
focal_class.full_signature: @Override public T read(T object)
focal_class.identifier: read
focal_class.modifiers: @Override public
focal_class.parameters: (T object)
focal_class.return: T
focal_class.signature: T read(T object)
focal_class.class_method_signature: Gaussian98Reader.close()
focal_class.full_signature: @Override public void close()
focal_class.identifier: close
focal_class.modifiers: @Override public
focal_class.parameters: ()
focal_class.return: void
focal_class.signature: void close()
focal_class.class_method_signature: Gaussian98Reader.readChemFile(IChemFile chemFile)
focal_class.full_signature: private IChemFile readChemFile(IChemFile chemFile)
focal_class.identifier: readChemFile
focal_class.modifiers: private
focal_class.parameters: (IChemFile chemFile)
focal_class.return: IChemFile
focal_class.signature: IChemFile readChemFile(IChemFile chemFile)
focal_class.class_method_signature: Gaussian98Reader.readCoordinates(IChemModel model)
focal_class.full_signature: private void readCoordinates(IChemModel model)
focal_class.identifier: readCoordinates
focal_class.modifiers: private
focal_class.parameters: (IChemModel model)
focal_class.return: void
focal_class.signature: void readCoordinates(IChemModel model)
focal_class.class_method_signature: Gaussian98Reader.readPartialCharges(IChemModel model)
focal_class.full_signature: private void readPartialCharges(IChemModel model)
focal_class.identifier: readPartialCharges
focal_class.modifiers: private
focal_class.parameters: (IChemModel model)
focal_class.return: void
focal_class.signature: void readPartialCharges(IChemModel model)
focal_class.class_method_signature: Gaussian98Reader.readNMRData(IChemModel model, String labelLine)
focal_class.full_signature: private void readNMRData(IChemModel model, String labelLine)
focal_class.identifier: readNMRData
focal_class.modifiers: private
focal_class.parameters: (IChemModel model, String labelLine)
focal_class.return: void
focal_class.signature: void readNMRData(IChemModel model, String labelLine)
focal_class.class_method_signature: Gaussian98Reader.parseLevelOfTheory(String line)
focal_class.full_signature: private String parseLevelOfTheory(String line)
focal_class.identifier: parseLevelOfTheory
focal_class.modifiers: private
focal_class.parameters: (String line)
focal_class.return: String
focal_class.signature: String parseLevelOfTheory(String line)
focal_class.class_method_signature: Gaussian98Reader.initIOSettings()
focal_class.full_signature: private void initIOSettings()
focal_class.identifier: initIOSettings
focal_class.modifiers: private
focal_class.parameters: ()
focal_class.return: void
focal_class.signature: void initIOSettings()
focal_class.class_method_signature: Gaussian98Reader.customizeJob()
focal_class.full_signature: private void customizeJob()
focal_class.identifier: customizeJob
focal_class.modifiers: private
focal_class.parameters: ()
focal_class.return: void
focal_class.signature: void customizeJob()
focal_class.superclass: extends DefaultChemObjectReader
focal_method.body: @Override
      public boolean accepts(Class<? extends IChemObject> classObject) {
          if (IChemFile.class.equals(classObject)) return true;
          Class<?>[] interfaces = classObject.getInterfaces();
          for (int i = 0; i < interfaces.length; i++) {
              if (IChemFile.class.equals(interfaces[i])) return true;
          }
          Class superClass = classObject.getSuperclass();
          if (superClass != null) return this.accepts(superClass);
          return false;
      }
focal_method.class_method_signature: Gaussian98Reader.accepts(Class<? extends IChemObject> classObject)
focal_method.full_signature: @Override public boolean accepts(Class<? extends IChemObject> classObject)
focal_method.identifier: accepts
focal_method.invocations: equals getInterfaces equals getSuperclass accepts
focal_method.modifiers: @Override public
focal_method.parameters: (Class<? extends IChemObject> classObject)
focal_method.return: boolean
focal_method.signature: boolean accepts(Class<? extends IChemObject> classObject)