test_class.declarator: logger = LoggingToolFactory.createLoggingTool(CTXReaderTest.class)
test_class.modifier: private static
test_class.original_string: private static ILoggingTool logger = LoggingToolFactory.createLoggingTool(CTXReaderTest.class);
test_class.type: ILoggingTool
test_class.var_name: logger
test_class.file: storage/io/src/test/java/org/openscience/cdk/io/CTXReaderTest.java
test_class.identifier: CTXReaderTest
test_class.superclass: extends SimpleChemObjectReaderTest
test_case.body: @Test
      public void testAccepts() {
          CTXReader reader = new CTXReader();
          Assert.assertTrue(reader.accepts(ChemFile.class));
      }
test_case.class_method_signature: CTXReaderTest.testAccepts()
test_case.full_signature: @Test public void testAccepts()
test_case.identifier: testAccepts
test_case.invocations: assertTrue accepts
test_case.modifiers: @Test public
test_case.parameters: ()
test_case.return: void
test_case.signature: void testAccepts()
focal_class.declarator: input
focal_class.modifier: private
focal_class.original_string: private BufferedReader      input;
focal_class.type: BufferedReader
focal_class.var_name: input
focal_class.declarator: logger = LoggingToolFactory.createLoggingTool(CTXReader.class)
focal_class.modifier: private static
focal_class.original_string: private static ILoggingTool logger = LoggingToolFactory.createLoggingTool(CTXReader.class);
focal_class.type: ILoggingTool
focal_class.var_name: logger
focal_class.declarator: file
focal_class.modifier: private
focal_class.original_string: private IChemFile           file;
focal_class.type: IChemFile
focal_class.var_name: file
focal_class.file: storage/io/src/main/java/org/openscience/cdk/io/CTXReader.java
focal_class.identifier: CTXReader
focal_class.class_method_signature: CTXReader.CTXReader()
focal_class.full_signature: public  CTXReader()
focal_class.identifier: CTXReader
focal_class.modifiers: public
focal_class.parameters: ()
focal_class.signature:  CTXReader()
focal_class.class_method_signature: CTXReader.CTXReader(Reader input)
focal_class.full_signature: public  CTXReader(Reader input)
focal_class.identifier: CTXReader
focal_class.modifiers: public
focal_class.parameters: (Reader input)
focal_class.signature:  CTXReader(Reader input)
focal_class.class_method_signature: CTXReader.CTXReader(InputStream input)
focal_class.full_signature: public  CTXReader(InputStream input)
focal_class.identifier: CTXReader
focal_class.modifiers: public
focal_class.parameters: (InputStream input)
focal_class.signature:  CTXReader(InputStream input)
focal_class.class_method_signature: CTXReader.getFormat()
focal_class.full_signature: @Override public IResourceFormat getFormat()
focal_class.identifier: getFormat
focal_class.modifiers: @Override public
focal_class.parameters: ()
focal_class.return: IResourceFormat
focal_class.signature: IResourceFormat getFormat()
focal_class.class_method_signature: CTXReader.setReader(Reader reader)
focal_class.full_signature: @Override public void setReader(Reader reader)
focal_class.identifier: setReader
focal_class.modifiers: @Override public
focal_class.parameters: (Reader reader)
focal_class.return: void
focal_class.signature: void setReader(Reader reader)
focal_class.class_method_signature: CTXReader.setReader(InputStream input)
focal_class.full_signature: @Override public void setReader(InputStream input)
focal_class.identifier: setReader
focal_class.modifiers: @Override public
focal_class.parameters: (InputStream input)
focal_class.return: void
focal_class.signature: void setReader(InputStream input)
focal_class.class_method_signature: CTXReader.accepts(Class<? extends IChemObject> classObject)
focal_class.full_signature: @Override public boolean accepts(Class<? extends IChemObject> classObject)
focal_class.identifier: accepts
focal_class.modifiers: @Override public
focal_class.parameters: (Class<? extends IChemObject> classObject)
focal_class.return: boolean
focal_class.signature: boolean accepts(Class<? extends IChemObject> classObject)
focal_class.class_method_signature: CTXReader.read(T object)
focal_class.full_signature: @Override public T read(T object)
focal_class.identifier: read
focal_class.modifiers: @Override public
focal_class.parameters: (T object)
focal_class.return: T
focal_class.signature: T read(T object)
focal_class.class_method_signature: CTXReader.readChemFile()
focal_class.full_signature: private IChemFile readChemFile()
focal_class.identifier: readChemFile
focal_class.modifiers: private
focal_class.parameters: ()
focal_class.return: IChemFile
focal_class.signature: IChemFile readChemFile()
focal_class.class_method_signature: CTXReader.processIdentBlock(int lineCount, IAtomContainer container)
focal_class.full_signature: private void processIdentBlock(int lineCount, IAtomContainer container)
focal_class.identifier: processIdentBlock
focal_class.modifiers: private
focal_class.parameters: (int lineCount, IAtomContainer container)
focal_class.return: void
focal_class.signature: void processIdentBlock(int lineCount, IAtomContainer container)
focal_class.class_method_signature: CTXReader.processNameBlock(int lineCount, IAtomContainer container)
focal_class.full_signature: private void processNameBlock(int lineCount, IAtomContainer container)
focal_class.identifier: processNameBlock
focal_class.modifiers: private
focal_class.parameters: (int lineCount, IAtomContainer container)
focal_class.return: void
focal_class.signature: void processNameBlock(int lineCount, IAtomContainer container)
focal_class.class_method_signature: CTXReader.processAtomsBlock(int lineCount, IAtomContainer container)
focal_class.full_signature: private void processAtomsBlock(int lineCount, IAtomContainer container)
focal_class.identifier: processAtomsBlock
focal_class.modifiers: private
focal_class.parameters: (int lineCount, IAtomContainer container)
focal_class.return: void
focal_class.signature: void processAtomsBlock(int lineCount, IAtomContainer container)
focal_class.class_method_signature: CTXReader.processBondsBlock(int lineCount, IAtomContainer container)
focal_class.full_signature: private void processBondsBlock(int lineCount, IAtomContainer container)
focal_class.identifier: processBondsBlock
focal_class.modifiers: private
focal_class.parameters: (int lineCount, IAtomContainer container)
focal_class.return: void
focal_class.signature: void processBondsBlock(int lineCount, IAtomContainer container)
focal_class.class_method_signature: CTXReader.getContentLinesCount(String line)
focal_class.full_signature: private int getContentLinesCount(String line)
focal_class.identifier: getContentLinesCount
focal_class.modifiers: private
focal_class.parameters: (String line)
focal_class.return: int
focal_class.signature: int getContentLinesCount(String line)
focal_class.class_method_signature: CTXReader.getCommand(String line)
focal_class.full_signature: private String getCommand(String line)
focal_class.identifier: getCommand
focal_class.modifiers: private
focal_class.parameters: (String line)
focal_class.return: String
focal_class.signature: String getCommand(String line)
focal_class.class_method_signature: CTXReader.isCommand(String line)
focal_class.full_signature: private boolean isCommand(String line)
focal_class.identifier: isCommand
focal_class.modifiers: private
focal_class.parameters: (String line)
focal_class.return: boolean
focal_class.signature: boolean isCommand(String line)
focal_class.class_method_signature: CTXReader.close()
focal_class.full_signature: @Override public void close()
focal_class.identifier: close
focal_class.modifiers: @Override public
focal_class.parameters: ()
focal_class.return: void
focal_class.signature: void close()
focal_class.superclass: extends DefaultChemObjectReader
focal_method.body: @Override
      public boolean accepts(Class<? extends IChemObject> classObject) {
          if (IChemFile.class.equals(classObject)) return true;
          Class<?>[] interfaces = classObject.getInterfaces();
          for (int i = 0; i < interfaces.length; i++) {
              if (IChemFile.class.equals(interfaces[i])) return true;
          }
          Class superClass = classObject.getSuperclass();
          if (superClass != null) return this.accepts(superClass);
          return false;
      }
focal_method.class_method_signature: CTXReader.accepts(Class<? extends IChemObject> classObject)
focal_method.full_signature: @Override public boolean accepts(Class<? extends IChemObject> classObject)
focal_method.identifier: accepts
focal_method.invocations: equals getInterfaces equals getSuperclass accepts
focal_method.modifiers: @Override public
focal_method.parameters: (Class<? extends IChemObject> classObject)
focal_method.return: boolean
focal_method.signature: boolean accepts(Class<? extends IChemObject> classObject)