test_class.declarator: logger = LoggingToolFactory.createLoggingTool(MDLReaderTest.class)
test_class.modifier: private static
test_class.original_string: private static ILoggingTool logger = LoggingToolFactory.createLoggingTool(MDLReaderTest.class);
test_class.type: ILoggingTool
test_class.var_name: logger
test_class.file: storage/ctab/src/test/java/org/openscience/cdk/io/MDLReaderTest.java
test_class.identifier: MDLReaderTest
test_class.superclass: extends SimpleChemObjectReaderTest
test_case.body: @Test
      public void testAccepts() {
          MDLReader reader = new MDLReader();
          reader.setReaderMode(Mode.STRICT);
          Assert.assertTrue(reader.accepts(ChemFile.class));
          Assert.assertTrue(reader.accepts(ChemModel.class));
          Assert.assertTrue(reader.accepts(AtomContainer.class));
      }
test_case.class_method_signature: MDLReaderTest.testAccepts()
test_case.full_signature: @Test public void testAccepts()
test_case.identifier: testAccepts
test_case.invocations: setReaderMode assertTrue accepts assertTrue accepts assertTrue accepts
test_case.modifiers: @Test public
test_case.parameters: ()
test_case.return: void
test_case.signature: void testAccepts()
focal_class.declarator: input          = null
focal_class.original_string: BufferedReader               input          = null;
focal_class.type: BufferedReader
focal_class.var_name: input
focal_class.declarator: logger         = LoggingToolFactory.createLoggingTool(MDLReader.class)
focal_class.modifier: private static
focal_class.original_string: private static ILoggingTool  logger         = LoggingToolFactory.createLoggingTool(MDLReader.class);
focal_class.type: ILoggingTool
focal_class.var_name: logger
focal_class.declarator: forceReadAs3DCoords
focal_class.modifier: private
focal_class.original_string: private BooleanIOSetting     forceReadAs3DCoords;
focal_class.type: BooleanIOSetting
focal_class.var_name: forceReadAs3DCoords
focal_class.declarator: TRAILING_SPACE = Pattern.compile("\\s+$")
focal_class.modifier: private static final
focal_class.original_string: private static final Pattern TRAILING_SPACE = Pattern.compile("\\s+$");
focal_class.type: Pattern
focal_class.var_name: TRAILING_SPACE
focal_class.file: storage/ctab/src/main/java/org/openscience/cdk/io/MDLReader.java
focal_class.identifier: MDLReader
focal_class.class_method_signature: MDLReader.MDLReader()
focal_class.full_signature: public  MDLReader()
focal_class.identifier: MDLReader
focal_class.modifiers: public
focal_class.parameters: ()
focal_class.signature:  MDLReader()
focal_class.class_method_signature: MDLReader.MDLReader(InputStream in)
focal_class.full_signature: public  MDLReader(InputStream in)
focal_class.identifier: MDLReader
focal_class.modifiers: public
focal_class.parameters: (InputStream in)
focal_class.signature:  MDLReader(InputStream in)
focal_class.class_method_signature: MDLReader.MDLReader(InputStream in, Mode mode)
focal_class.full_signature: public  MDLReader(InputStream in, Mode mode)
focal_class.identifier: MDLReader
focal_class.modifiers: public
focal_class.parameters: (InputStream in, Mode mode)
focal_class.signature:  MDLReader(InputStream in, Mode mode)
focal_class.class_method_signature: MDLReader.MDLReader(Reader in)
focal_class.full_signature: public  MDLReader(Reader in)
focal_class.identifier: MDLReader
focal_class.modifiers: public
focal_class.parameters: (Reader in)
focal_class.signature:  MDLReader(Reader in)
focal_class.class_method_signature: MDLReader.MDLReader(Reader in, Mode mode)
focal_class.full_signature: public  MDLReader(Reader in, Mode mode)
focal_class.identifier: MDLReader
focal_class.modifiers: public
focal_class.parameters: (Reader in, Mode mode)
focal_class.signature:  MDLReader(Reader in, Mode mode)
focal_class.class_method_signature: MDLReader.getFormat()
focal_class.full_signature: @Override public IResourceFormat getFormat()
focal_class.identifier: getFormat
focal_class.modifiers: @Override public
focal_class.parameters: ()
focal_class.return: IResourceFormat
focal_class.signature: IResourceFormat getFormat()
focal_class.class_method_signature: MDLReader.setReader(Reader input)
focal_class.full_signature: @Override public void setReader(Reader input)
focal_class.identifier: setReader
focal_class.modifiers: @Override public
focal_class.parameters: (Reader input)
focal_class.return: void
focal_class.signature: void setReader(Reader input)
focal_class.class_method_signature: MDLReader.setReader(InputStream input)
focal_class.full_signature: @Override public void setReader(InputStream input)
focal_class.identifier: setReader
focal_class.modifiers: @Override public
focal_class.parameters: (InputStream input)
focal_class.return: void
focal_class.signature: void setReader(InputStream input)
focal_class.class_method_signature: MDLReader.accepts(Class<? extends IChemObject> classObject)
focal_class.full_signature: @Override public boolean accepts(Class<? extends IChemObject> classObject)
focal_class.identifier: accepts
focal_class.modifiers: @Override public
focal_class.parameters: (Class<? extends IChemObject> classObject)
focal_class.return: boolean
focal_class.signature: boolean accepts(Class<? extends IChemObject> classObject)
focal_class.class_method_signature: MDLReader.read(T object)
focal_class.full_signature: @Override public T read(T object)
focal_class.identifier: read
focal_class.modifiers: @Override public
focal_class.parameters: (T object)
focal_class.return: T
focal_class.signature: T read(T object)
focal_class.class_method_signature: MDLReader.readChemModel(IChemModel chemModel)
focal_class.full_signature: private IChemModel readChemModel(IChemModel chemModel)
focal_class.identifier: readChemModel
focal_class.modifiers: private
focal_class.parameters: (IChemModel chemModel)
focal_class.return: IChemModel
focal_class.signature: IChemModel readChemModel(IChemModel chemModel)
focal_class.class_method_signature: MDLReader.readChemFile(IChemFile chemFile)
focal_class.full_signature: private IChemFile readChemFile(IChemFile chemFile)
focal_class.identifier: readChemFile
focal_class.modifiers: private
focal_class.parameters: (IChemFile chemFile)
focal_class.return: IChemFile
focal_class.signature: IChemFile readChemFile(IChemFile chemFile)
focal_class.class_method_signature: MDLReader.readMolecule(IAtomContainer molecule)
focal_class.full_signature: private IAtomContainer readMolecule(IAtomContainer molecule)
focal_class.identifier: readMolecule
focal_class.modifiers: private
focal_class.parameters: (IAtomContainer molecule)
focal_class.return: IAtomContainer
focal_class.signature: IAtomContainer readMolecule(IAtomContainer molecule)
focal_class.class_method_signature: MDLReader.close()
focal_class.full_signature: @Override public void close()
focal_class.identifier: close
focal_class.modifiers: @Override public
focal_class.parameters: ()
focal_class.return: void
focal_class.signature: void close()
focal_class.class_method_signature: MDLReader.initIOSettings()
focal_class.full_signature: private void initIOSettings()
focal_class.identifier: initIOSettings
focal_class.modifiers: private
focal_class.parameters: ()
focal_class.return: void
focal_class.signature: void initIOSettings()
focal_class.class_method_signature: MDLReader.customizeJob()
focal_class.full_signature: public void customizeJob()
focal_class.identifier: customizeJob
focal_class.modifiers: public
focal_class.parameters: ()
focal_class.return: void
focal_class.signature: void customizeJob()
focal_class.superclass: extends DefaultChemObjectReader
focal_method.body: @Override
      public boolean accepts(Class<? extends IChemObject> classObject) {
          if (IChemFile.class.equals(classObject)) return true;
          if (IChemModel.class.equals(classObject)) return true;
          if (IAtomContainer.class.equals(classObject)) return true;
          Class<?>[] interfaces = classObject.getInterfaces();
          for (int i = 0; i < interfaces.length; i++) {
              if (IChemFile.class.equals(interfaces[i])) return true;
              if (IChemModel.class.equals(interfaces[i])) return true;
              if (IAtomContainer.class.equals(interfaces[i])) return true;
          }
          Class superClass = classObject.getSuperclass();
          if (superClass != null) return this.accepts(superClass);
          return false;
      }
focal_method.class_method_signature: MDLReader.accepts(Class<? extends IChemObject> classObject)
focal_method.full_signature: @Override public boolean accepts(Class<? extends IChemObject> classObject)
focal_method.identifier: accepts
focal_method.invocations: equals equals equals getInterfaces equals equals equals getSuperclass accepts
focal_method.modifiers: @Override public
focal_method.parameters: (Class<? extends IChemObject> classObject)
focal_method.return: boolean
focal_method.signature: boolean accepts(Class<? extends IChemObject> classObject)