test_class.file: descriptor/qsaratomic/src/test/java/org/openscience/cdk/qsar/descriptors/atomic/IsProtonInConjugatedPiSystemDescriptorTest.java
test_class.identifier: IsProtonInConjugatedPiSystemDescriptorTest
test_class.superclass: extends AtomicDescriptorTest
test_case.body: @Test
      public void testIsProtonInConjugatedPiSystemDescriptor() throws ClassNotFoundException, CDKException,
              java.lang.Exception {
          IAtomicDescriptor descriptor = new IsProtonInConjugatedPiSystemDescriptor();
          Object[] params = {new Boolean(true)};
          descriptor.setParameters(params);
          SmilesParser sp = new SmilesParser(DefaultChemObjectBuilder.getInstance());
          IAtomContainer mol = sp.parseSmiles("CNC=CC=C");
          addExplicitHydrogens(mol);
          Assert.assertTrue(((BooleanResult) descriptor.calculate(mol.getAtom(13), mol).getValue()).booleanValue());
      }
test_case.class_method_signature: IsProtonInConjugatedPiSystemDescriptorTest.testIsProtonInConjugatedPiSystemDescriptor()
test_case.full_signature: @Test public void testIsProtonInConjugatedPiSystemDescriptor()
test_case.identifier: testIsProtonInConjugatedPiSystemDescriptor
test_case.invocations: setParameters getInstance parseSmiles addExplicitHydrogens assertTrue booleanValue getValue calculate getAtom
test_case.modifiers: @Test public
test_case.parameters: ()
test_case.return: void
test_case.signature: void testIsProtonInConjugatedPiSystemDescriptor()
focal_class.declarator: NAMES            = {"protonInConjSystem"}
focal_class.modifier: private static final
focal_class.original_string: private static final String[] NAMES            = {"protonInConjSystem"};
focal_class.type: String[]
focal_class.var_name: NAMES
focal_class.declarator: checkAromaticity = false
focal_class.modifier: private
focal_class.original_string: private boolean               checkAromaticity = false;
focal_class.type: boolean
focal_class.var_name: checkAromaticity
focal_class.declarator: acold            = null
focal_class.modifier: private
focal_class.original_string: private IAtomContainer        acold            = null;
focal_class.type: IAtomContainer
focal_class.var_name: acold
focal_class.declarator: acSet            = null
focal_class.modifier: private
focal_class.original_string: private IAtomContainerSet     acSet            = null;
focal_class.type: IAtomContainerSet
focal_class.var_name: acSet
focal_class.file: descriptor/qsaratomic/src/main/java/org/openscience/cdk/qsar/descriptors/atomic/IsProtonInConjugatedPiSystemDescriptor.java
focal_class.identifier: IsProtonInConjugatedPiSystemDescriptor
focal_class.interfaces: implements IAtomicDescriptor
focal_class.class_method_signature: IsProtonInConjugatedPiSystemDescriptor.IsProtonInConjugatedPiSystemDescriptor()
focal_class.full_signature: public  IsProtonInConjugatedPiSystemDescriptor()
focal_class.identifier: IsProtonInConjugatedPiSystemDescriptor
focal_class.modifiers: public
focal_class.parameters: ()
focal_class.signature:  IsProtonInConjugatedPiSystemDescriptor()
focal_class.class_method_signature: IsProtonInConjugatedPiSystemDescriptor.getSpecification()
focal_class.full_signature: @Override public DescriptorSpecification getSpecification()
focal_class.identifier: getSpecification
focal_class.modifiers: @Override public
focal_class.parameters: ()
focal_class.return: DescriptorSpecification
focal_class.signature: DescriptorSpecification getSpecification()
focal_class.class_method_signature: IsProtonInConjugatedPiSystemDescriptor.setParameters(Object[] params)
focal_class.full_signature: @Override public void setParameters(Object[] params)
focal_class.identifier: setParameters
focal_class.modifiers: @Override public
focal_class.parameters: (Object[] params)
focal_class.return: void
focal_class.signature: void setParameters(Object[] params)
focal_class.class_method_signature: IsProtonInConjugatedPiSystemDescriptor.getParameters()
focal_class.full_signature: @Override public Object[] getParameters()
focal_class.identifier: getParameters
focal_class.modifiers: @Override public
focal_class.parameters: ()
focal_class.return: Object[]
focal_class.signature: Object[] getParameters()
focal_class.class_method_signature: IsProtonInConjugatedPiSystemDescriptor.getDescriptorNames()
focal_class.full_signature: @Override public String[] getDescriptorNames()
focal_class.identifier: getDescriptorNames
focal_class.modifiers: @Override public
focal_class.parameters: ()
focal_class.return: String[]
focal_class.signature: String[] getDescriptorNames()
focal_class.class_method_signature: IsProtonInConjugatedPiSystemDescriptor.calculate(IAtom atom, IAtomContainer atomContainer)
focal_class.full_signature: @Override public DescriptorValue calculate(IAtom atom, IAtomContainer atomContainer)
focal_class.identifier: calculate
focal_class.modifiers: @Override public
focal_class.parameters: (IAtom atom, IAtomContainer atomContainer)
focal_class.return: DescriptorValue
focal_class.signature: DescriptorValue calculate(IAtom atom, IAtomContainer atomContainer)
focal_class.class_method_signature: IsProtonInConjugatedPiSystemDescriptor.getParameterNames()
focal_class.full_signature: @Override public String[] getParameterNames()
focal_class.identifier: getParameterNames
focal_class.modifiers: @Override public
focal_class.parameters: ()
focal_class.return: String[]
focal_class.signature: String[] getParameterNames()
focal_class.class_method_signature: IsProtonInConjugatedPiSystemDescriptor.getParameterType(String name)
focal_class.full_signature: @Override public Object getParameterType(String name)
focal_class.identifier: getParameterType
focal_class.modifiers: @Override public
focal_class.parameters: (String name)
focal_class.return: Object
focal_class.signature: Object getParameterType(String name)
focal_class.superclass: extends AbstractAtomicDescriptor
focal_method.body: public IsProtonInConjugatedPiSystemDescriptor() {}
focal_method.class_method_signature: IsProtonInConjugatedPiSystemDescriptor.IsProtonInConjugatedPiSystemDescriptor()
focal_method.full_signature: public  IsProtonInConjugatedPiSystemDescriptor()
focal_method.identifier: IsProtonInConjugatedPiSystemDescriptor
focal_method.modifiers: public
focal_method.parameters: ()
focal_method.signature:  IsProtonInConjugatedPiSystemDescriptor()