test_class.declarator: builder = SilentChemObjectBuilder.getInstance()
test_class.modifier: private final static
test_class.original_string: private final static IChemObjectBuilder builder = SilentChemObjectBuilder.getInstance();
test_class.type: IChemObjectBuilder
test_class.var_name: builder
test_class.declarator: lpcheck = new LonePairElectronChecker()
test_class.original_string: LonePairElectronChecker                 lpcheck = new LonePairElectronChecker();
test_class.type: LonePairElectronChecker
test_class.var_name: lpcheck
test_class.file: descriptor/qsaratomic/src/test/java/org/openscience/cdk/qsar/descriptors/atomic/StabilizationPlusChargeDescriptorTest.java
test_class.identifier: StabilizationPlusChargeDescriptorTest
test_class.superclass: extends AtomicDescriptorTest
test_case.body: @Test
      @Category(SlowTest.class)
      public void testStabilizationPlusChargeDescriptor() throws Exception {
  
          IAtomContainer mol = builder.newInstance(IAtomContainer.class);
          mol.addAtom(builder.newInstance(IAtom.class, "C"));
          mol.getAtom(0).setFormalCharge(-1);
          mol.addAtom(builder.newInstance(IAtom.class, "C"));
          mol.getAtom(1).setFormalCharge(1);
          mol.addBond(0, 1, Order.SINGLE);
          mol.addAtom(builder.newInstance(IAtom.class, "F"));
          mol.addBond(1, 2, Order.SINGLE);
  
          AtomContainerManipulator.percieveAtomTypesAndConfigureAtoms(mol);
          addExplicitHydrogens(mol);
          lpcheck.saturate(mol);
  
          DoubleResult result = ((DoubleResult) descriptor.calculate(mol.getAtom(1), mol).getValue());
  
          Assert.assertNotSame(0.0, result.doubleValue());
      }
test_case.class_method_signature: StabilizationPlusChargeDescriptorTest.testStabilizationPlusChargeDescriptor()
test_case.full_signature: @Test @Category(SlowTest.class) public void testStabilizationPlusChargeDescriptor()
test_case.identifier: testStabilizationPlusChargeDescriptor
test_case.invocations: newInstance addAtom newInstance setFormalCharge getAtom addAtom newInstance setFormalCharge getAtom addBond addAtom newInstance addBond percieveAtomTypesAndConfigureAtoms addExplicitHydrogens saturate getValue calculate getAtom assertNotSame doubleValue
test_case.modifiers: @Test @Category(SlowTest.class) public
test_case.parameters: ()
test_case.return: void
test_case.signature: void testStabilizationPlusChargeDescriptor()
focal_class.declarator: NAMES = {"stabilPlusC"}
focal_class.modifier: private static final
focal_class.original_string: private static final String[] NAMES = {"stabilPlusC"};
focal_class.type: String[]
focal_class.var_name: NAMES
focal_class.declarator: stabil
focal_class.modifier: private
focal_class.original_string: private StabilizationCharges stabil;
focal_class.type: StabilizationCharges
focal_class.var_name: stabil
focal_class.file: descriptor/qsaratomic/src/main/java/org/openscience/cdk/qsar/descriptors/atomic/StabilizationPlusChargeDescriptor.java
focal_class.identifier: StabilizationPlusChargeDescriptor
focal_class.interfaces: implements IAtomicDescriptor
focal_class.class_method_signature: StabilizationPlusChargeDescriptor.StabilizationPlusChargeDescriptor()
focal_class.full_signature: public  StabilizationPlusChargeDescriptor()
focal_class.identifier: StabilizationPlusChargeDescriptor
focal_class.modifiers: public
focal_class.parameters: ()
focal_class.signature:  StabilizationPlusChargeDescriptor()
focal_class.class_method_signature: StabilizationPlusChargeDescriptor.getSpecification()
focal_class.full_signature: @Override public DescriptorSpecification getSpecification()
focal_class.identifier: getSpecification
focal_class.modifiers: @Override public
focal_class.parameters: ()
focal_class.return: DescriptorSpecification
focal_class.signature: DescriptorSpecification getSpecification()
focal_class.class_method_signature: StabilizationPlusChargeDescriptor.setParameters(Object[] params)
focal_class.full_signature: @Override public void setParameters(Object[] params)
focal_class.identifier: setParameters
focal_class.modifiers: @Override public
focal_class.parameters: (Object[] params)
focal_class.return: void
focal_class.signature: void setParameters(Object[] params)
focal_class.class_method_signature: StabilizationPlusChargeDescriptor.getParameters()
focal_class.full_signature: @Override public Object[] getParameters()
focal_class.identifier: getParameters
focal_class.modifiers: @Override public
focal_class.parameters: ()
focal_class.return: Object[]
focal_class.signature: Object[] getParameters()
focal_class.class_method_signature: StabilizationPlusChargeDescriptor.getDescriptorNames()
focal_class.full_signature: @Override public String[] getDescriptorNames()
focal_class.identifier: getDescriptorNames
focal_class.modifiers: @Override public
focal_class.parameters: ()
focal_class.return: String[]
focal_class.signature: String[] getDescriptorNames()
focal_class.class_method_signature: StabilizationPlusChargeDescriptor.calculate(IAtom atom, IAtomContainer container)
focal_class.full_signature: @Override public DescriptorValue calculate(IAtom atom, IAtomContainer container)
focal_class.identifier: calculate
focal_class.modifiers: @Override public
focal_class.parameters: (IAtom atom, IAtomContainer container)
focal_class.return: DescriptorValue
focal_class.signature: DescriptorValue calculate(IAtom atom, IAtomContainer container)
focal_class.class_method_signature: StabilizationPlusChargeDescriptor.getParameterNames()
focal_class.full_signature: @Override public String[] getParameterNames()
focal_class.identifier: getParameterNames
focal_class.modifiers: @Override public
focal_class.parameters: ()
focal_class.return: String[]
focal_class.signature: String[] getParameterNames()
focal_class.class_method_signature: StabilizationPlusChargeDescriptor.getParameterType(String name)
focal_class.full_signature: @Override public Object getParameterType(String name)
focal_class.identifier: getParameterType
focal_class.modifiers: @Override public
focal_class.parameters: (String name)
focal_class.return: Object
focal_class.signature: Object getParameterType(String name)
focal_class.superclass: extends AbstractAtomicDescriptor
focal_method.body: public StabilizationPlusChargeDescriptor() {
          stabil = new StabilizationCharges();
      }
focal_method.class_method_signature: StabilizationPlusChargeDescriptor.StabilizationPlusChargeDescriptor()
focal_method.full_signature: public  StabilizationPlusChargeDescriptor()
focal_method.identifier: StabilizationPlusChargeDescriptor
focal_method.modifiers: public
focal_method.parameters: ()
focal_method.signature:  StabilizationPlusChargeDescriptor()