test_class.declarator: logger = LoggingToolFactory.createLoggingTool(PCCompoundASNReaderTest.class)
test_class.modifier: private static
test_class.original_string: private static ILoggingTool logger = LoggingToolFactory.createLoggingTool(PCCompoundASNReaderTest.class);
test_class.type: ILoggingTool
test_class.var_name: logger
test_class.file: storage/io/src/test/java/org/openscience/cdk/io/PCCompoundASNReaderTest.java
test_class.identifier: PCCompoundASNReaderTest
test_class.superclass: extends SimpleChemObjectReaderTest
test_case.body: @Test
      public void testAccepts() {
          PCCompoundASNReader reader = new PCCompoundASNReader();
          Assert.assertTrue(reader.accepts(ChemFile.class));
      }
test_case.class_method_signature: PCCompoundASNReaderTest.testAccepts()
test_case.full_signature: @Test public void testAccepts()
test_case.identifier: testAccepts
test_case.invocations: assertTrue accepts
test_case.modifiers: @Test public
test_case.parameters: ()
test_case.return: void
test_case.signature: void testAccepts()
focal_class.declarator: input
focal_class.modifier: private
focal_class.original_string: private BufferedReader      input;
focal_class.type: BufferedReader
focal_class.var_name: input
focal_class.declarator: logger   = LoggingToolFactory.createLoggingTool(PCCompoundASNReader.class)
focal_class.modifier: private static
focal_class.original_string: private static ILoggingTool logger   = LoggingToolFactory.createLoggingTool(PCCompoundASNReader.class);
focal_class.type: ILoggingTool
focal_class.var_name: logger
focal_class.declarator: molecule = null
focal_class.original_string: IAtomContainer              molecule = null;
focal_class.type: IAtomContainer
focal_class.var_name: molecule
focal_class.declarator: atomIDs  = null
focal_class.original_string: Map<String, IAtom>          atomIDs  = null;
focal_class.type: Map<String, IAtom>
focal_class.var_name: atomIDs
focal_class.file: storage/io/src/main/java/org/openscience/cdk/io/PCCompoundASNReader.java
focal_class.identifier: PCCompoundASNReader
focal_class.class_method_signature: PCCompoundASNReader.PCCompoundASNReader(Reader input)
focal_class.full_signature: public  PCCompoundASNReader(Reader input)
focal_class.identifier: PCCompoundASNReader
focal_class.modifiers: public
focal_class.parameters: (Reader input)
focal_class.signature:  PCCompoundASNReader(Reader input)
focal_class.class_method_signature: PCCompoundASNReader.PCCompoundASNReader(InputStream input)
focal_class.full_signature: public  PCCompoundASNReader(InputStream input)
focal_class.identifier: PCCompoundASNReader
focal_class.modifiers: public
focal_class.parameters: (InputStream input)
focal_class.signature:  PCCompoundASNReader(InputStream input)
focal_class.class_method_signature: PCCompoundASNReader.PCCompoundASNReader()
focal_class.full_signature: public  PCCompoundASNReader()
focal_class.identifier: PCCompoundASNReader
focal_class.modifiers: public
focal_class.parameters: ()
focal_class.signature:  PCCompoundASNReader()
focal_class.class_method_signature: PCCompoundASNReader.getFormat()
focal_class.full_signature: @Override public IResourceFormat getFormat()
focal_class.identifier: getFormat
focal_class.modifiers: @Override public
focal_class.parameters: ()
focal_class.return: IResourceFormat
focal_class.signature: IResourceFormat getFormat()
focal_class.class_method_signature: PCCompoundASNReader.setReader(Reader input)
focal_class.full_signature: @Override public void setReader(Reader input)
focal_class.identifier: setReader
focal_class.modifiers: @Override public
focal_class.parameters: (Reader input)
focal_class.return: void
focal_class.signature: void setReader(Reader input)
focal_class.class_method_signature: PCCompoundASNReader.setReader(InputStream input)
focal_class.full_signature: @Override public void setReader(InputStream input)
focal_class.identifier: setReader
focal_class.modifiers: @Override public
focal_class.parameters: (InputStream input)
focal_class.return: void
focal_class.signature: void setReader(InputStream input)
focal_class.class_method_signature: PCCompoundASNReader.accepts(Class<? extends IChemObject> classObject)
focal_class.full_signature: @Override public boolean accepts(Class<? extends IChemObject> classObject)
focal_class.identifier: accepts
focal_class.modifiers: @Override public
focal_class.parameters: (Class<? extends IChemObject> classObject)
focal_class.return: boolean
focal_class.signature: boolean accepts(Class<? extends IChemObject> classObject)
focal_class.class_method_signature: PCCompoundASNReader.read(T object)
focal_class.full_signature: @Override public T read(T object)
focal_class.identifier: read
focal_class.modifiers: @Override public
focal_class.parameters: (T object)
focal_class.return: T
focal_class.signature: T read(T object)
focal_class.class_method_signature: PCCompoundASNReader.close()
focal_class.full_signature: @Override public void close()
focal_class.identifier: close
focal_class.modifiers: @Override public
focal_class.parameters: ()
focal_class.return: void
focal_class.signature: void close()
focal_class.class_method_signature: PCCompoundASNReader.readChemFile(IChemFile file)
focal_class.full_signature: private IChemFile readChemFile(IChemFile file)
focal_class.identifier: readChemFile
focal_class.modifiers: private
focal_class.parameters: (IChemFile file)
focal_class.return: IChemFile
focal_class.signature: IChemFile readChemFile(IChemFile file)
focal_class.class_method_signature: PCCompoundASNReader.processBlock(String line)
focal_class.full_signature: private void processBlock(String line)
focal_class.identifier: processBlock
focal_class.modifiers: private
focal_class.parameters: (String line)
focal_class.return: void
focal_class.signature: void processBlock(String line)
focal_class.class_method_signature: PCCompoundASNReader.processPropsBlock()
focal_class.full_signature: private void processPropsBlock()
focal_class.identifier: processPropsBlock
focal_class.modifiers: private
focal_class.parameters: ()
focal_class.return: void
focal_class.signature: void processPropsBlock()
focal_class.class_method_signature: PCCompoundASNReader.processPropsBlockBlock()
focal_class.full_signature: private void processPropsBlockBlock()
focal_class.identifier: processPropsBlockBlock
focal_class.modifiers: private
focal_class.parameters: ()
focal_class.return: void
focal_class.signature: void processPropsBlockBlock()
focal_class.class_method_signature: PCCompoundASNReader.extractURN()
focal_class.full_signature: private URN extractURN()
focal_class.identifier: extractURN
focal_class.modifiers: private
focal_class.parameters: ()
focal_class.return: URN
focal_class.signature: URN extractURN()
focal_class.class_method_signature: PCCompoundASNReader.processAtomBlock()
focal_class.full_signature: private void processAtomBlock()
focal_class.identifier: processAtomBlock
focal_class.modifiers: private
focal_class.parameters: ()
focal_class.return: void
focal_class.signature: void processAtomBlock()
focal_class.class_method_signature: PCCompoundASNReader.processBondBlock()
focal_class.full_signature: private void processBondBlock()
focal_class.identifier: processBondBlock
focal_class.modifiers: private
focal_class.parameters: ()
focal_class.return: void
focal_class.signature: void processBondBlock()
focal_class.class_method_signature: PCCompoundASNReader.getAtom(int i)
focal_class.full_signature: private IAtom getAtom(int i)
focal_class.identifier: getAtom
focal_class.modifiers: private
focal_class.parameters: (int i)
focal_class.return: IAtom
focal_class.signature: IAtom getAtom(int i)
focal_class.class_method_signature: PCCompoundASNReader.getBond(int i)
focal_class.full_signature: private IBond getBond(int i)
focal_class.identifier: getBond
focal_class.modifiers: private
focal_class.parameters: (int i)
focal_class.return: IBond
focal_class.signature: IBond getBond(int i)
focal_class.class_method_signature: PCCompoundASNReader.processAtomBlockBlock(String line)
focal_class.full_signature: private void processAtomBlockBlock(String line)
focal_class.identifier: processAtomBlockBlock
focal_class.modifiers: private
focal_class.parameters: (String line)
focal_class.return: void
focal_class.signature: void processAtomBlockBlock(String line)
focal_class.class_method_signature: PCCompoundASNReader.processBondBlockBlock(String line)
focal_class.full_signature: private void processBondBlockBlock(String line)
focal_class.identifier: processBondBlockBlock
focal_class.modifiers: private
focal_class.parameters: (String line)
focal_class.return: void
focal_class.signature: void processBondBlockBlock(String line)
focal_class.class_method_signature: PCCompoundASNReader.processAtomAIDs()
focal_class.full_signature: private void processAtomAIDs()
focal_class.identifier: processAtomAIDs
focal_class.modifiers: private
focal_class.parameters: ()
focal_class.return: void
focal_class.signature: void processAtomAIDs()
focal_class.class_method_signature: PCCompoundASNReader.processBondAtomIDs(int pos)
focal_class.full_signature: private void processBondAtomIDs(int pos)
focal_class.identifier: processBondAtomIDs
focal_class.modifiers: private
focal_class.parameters: (int pos)
focal_class.return: void
focal_class.signature: void processBondAtomIDs(int pos)
focal_class.class_method_signature: PCCompoundASNReader.processAtomElements()
focal_class.full_signature: private void processAtomElements()
focal_class.identifier: processAtomElements
focal_class.modifiers: private
focal_class.parameters: ()
focal_class.return: void
focal_class.signature: void processAtomElements()
focal_class.class_method_signature: PCCompoundASNReader.toSymbol(String value)
focal_class.full_signature: private String toSymbol(String value)
focal_class.identifier: toSymbol
focal_class.modifiers: private
focal_class.parameters: (String value)
focal_class.return: String
focal_class.signature: String toSymbol(String value)
focal_class.class_method_signature: PCCompoundASNReader.skipBlock()
focal_class.full_signature: private void skipBlock()
focal_class.identifier: skipBlock
focal_class.modifiers: private
focal_class.parameters: ()
focal_class.return: void
focal_class.signature: void skipBlock()
focal_class.class_method_signature: PCCompoundASNReader.getCommand(String line)
focal_class.full_signature: private String getCommand(String line)
focal_class.identifier: getCommand
focal_class.modifiers: private
focal_class.parameters: (String line)
focal_class.return: String
focal_class.signature: String getCommand(String line)
focal_class.class_method_signature: PCCompoundASNReader.getValue(String line)
focal_class.full_signature: private String getValue(String line)
focal_class.identifier: getValue
focal_class.modifiers: private
focal_class.parameters: (String line)
focal_class.return: String
focal_class.signature: String getValue(String line)
focal_class.class_method_signature: PCCompoundASNReader.getQuotedValue(String line)
focal_class.full_signature: private String getQuotedValue(String line)
focal_class.identifier: getQuotedValue
focal_class.modifiers: private
focal_class.parameters: (String line)
focal_class.return: String
focal_class.signature: String getQuotedValue(String line)
focal_class.superclass: extends DefaultChemObjectReader
focal_method.body: @Override
      public boolean accepts(Class<? extends IChemObject> classObject) {
          if (IChemFile.class.equals(classObject)) return true;
          Class<?>[] interfaces = classObject.getInterfaces();
          for (int i = 0; i < interfaces.length; i++) {
              if (IChemFile.class.equals(interfaces[i])) return true;
          }
          Class superClass = classObject.getSuperclass();
          if (superClass != null) return this.accepts(superClass);
          return false;
      }
focal_method.class_method_signature: PCCompoundASNReader.accepts(Class<? extends IChemObject> classObject)
focal_method.full_signature: @Override public boolean accepts(Class<? extends IChemObject> classObject)
focal_method.identifier: accepts
focal_method.invocations: equals getInterfaces equals getSuperclass accepts
focal_method.modifiers: @Override public
focal_method.parameters: (Class<? extends IChemObject> classObject)
focal_method.return: boolean
focal_method.signature: boolean accepts(Class<? extends IChemObject> classObject)