test_class.file: tool/pcore/src/test/java/org/openscience/cdk/pharmacophore/PharmacophoreQueryBondTest.java
test_class.identifier: PharmacophoreQueryBondTest
test_case.body: @Test
      public void testUpper() {
          PharmacophoreQueryAtom qatom1 = new PharmacophoreQueryAtom("Amine", "[CX2]N");
          PharmacophoreQueryAtom qatom2 = new PharmacophoreQueryAtom("aromatic", "c1ccccc1");
          PharmacophoreQueryBond qbond1 = new PharmacophoreQueryBond(qatom1, qatom2, 1.0, 2.0);
          PharmacophoreQueryBond qbond2 = new PharmacophoreQueryBond(qatom1, qatom2, 1.732);
  
          Assert.assertEquals(2.0, qbond1.getUpper(), 0.01);
          Assert.assertEquals(1.732, qbond2.getUpper(), 0.01);
      }
test_case.class_method_signature: PharmacophoreQueryBondTest.testUpper()
test_case.full_signature: @Test public void testUpper()
test_case.identifier: testUpper
test_case.invocations: assertEquals getUpper assertEquals getUpper
test_case.modifiers: @Test public
test_case.parameters: ()
test_case.return: void
test_case.signature: void testUpper()
focal_class.declarator: upper
focal_class.modifier: private
focal_class.original_string: private double upper;
focal_class.type: double
focal_class.var_name: upper
focal_class.declarator: lower
focal_class.modifier: private
focal_class.original_string: private double lower;
focal_class.type: double
focal_class.var_name: lower
focal_class.file: tool/pcore/src/main/java/org/openscience/cdk/pharmacophore/PharmacophoreQueryBond.java
focal_class.identifier: PharmacophoreQueryBond
focal_class.interfaces: implements IQueryBond
focal_class.class_method_signature: PharmacophoreQueryBond.PharmacophoreQueryBond()
focal_class.full_signature: public  PharmacophoreQueryBond()
focal_class.identifier: PharmacophoreQueryBond
focal_class.modifiers: public
focal_class.parameters: ()
focal_class.signature:  PharmacophoreQueryBond()
focal_class.class_method_signature: PharmacophoreQueryBond.PharmacophoreQueryBond(PharmacophoreQueryAtom atom1, PharmacophoreQueryAtom atom2, double lower, double upper)
focal_class.full_signature: public  PharmacophoreQueryBond(PharmacophoreQueryAtom atom1, PharmacophoreQueryAtom atom2, double lower, double upper)
focal_class.identifier: PharmacophoreQueryBond
focal_class.modifiers: public
focal_class.parameters: (PharmacophoreQueryAtom atom1, PharmacophoreQueryAtom atom2, double lower, double upper)
focal_class.signature:  PharmacophoreQueryBond(PharmacophoreQueryAtom atom1, PharmacophoreQueryAtom atom2, double lower, double upper)
focal_class.class_method_signature: PharmacophoreQueryBond.PharmacophoreQueryBond(PharmacophoreQueryAtom atom1, PharmacophoreQueryAtom atom2, double distance)
focal_class.full_signature: public  PharmacophoreQueryBond(PharmacophoreQueryAtom atom1, PharmacophoreQueryAtom atom2, double distance)
focal_class.identifier: PharmacophoreQueryBond
focal_class.modifiers: public
focal_class.parameters: (PharmacophoreQueryAtom atom1, PharmacophoreQueryAtom atom2, double distance)
focal_class.signature:  PharmacophoreQueryBond(PharmacophoreQueryAtom atom1, PharmacophoreQueryAtom atom2, double distance)
focal_class.class_method_signature: PharmacophoreQueryBond.matches(IBond bond)
focal_class.full_signature: @Override public boolean matches(IBond bond)
focal_class.identifier: matches
focal_class.modifiers: @Override public
focal_class.parameters: (IBond bond)
focal_class.return: boolean
focal_class.signature: boolean matches(IBond bond)
focal_class.class_method_signature: PharmacophoreQueryBond.getUpper()
focal_class.full_signature: public double getUpper()
focal_class.identifier: getUpper
focal_class.modifiers: public
focal_class.parameters: ()
focal_class.return: double
focal_class.signature: double getUpper()
focal_class.class_method_signature: PharmacophoreQueryBond.getLower()
focal_class.full_signature: public double getLower()
focal_class.identifier: getLower
focal_class.modifiers: public
focal_class.parameters: ()
focal_class.return: double
focal_class.signature: double getLower()
focal_class.class_method_signature: PharmacophoreQueryBond.round(double val, int places)
focal_class.full_signature: private double round(double val, int places)
focal_class.identifier: round
focal_class.modifiers: private
focal_class.parameters: (double val, int places)
focal_class.return: double
focal_class.signature: double round(double val, int places)
focal_class.class_method_signature: PharmacophoreQueryBond.toString()
focal_class.full_signature: @Override public String toString()
focal_class.identifier: toString
focal_class.modifiers: @Override public
focal_class.parameters: ()
focal_class.return: String
focal_class.signature: String toString()
focal_class.superclass: extends Bond
focal_method.body: public double getUpper() {
          return upper;
      }
focal_method.class_method_signature: PharmacophoreQueryBond.getUpper()
focal_method.full_signature: public double getUpper()
focal_method.identifier: getUpper
focal_method.modifiers: public
focal_method.parameters: ()
focal_method.return: double
focal_method.signature: double getUpper()