test_class.file: tool/pcore/src/test/java/org/openscience/cdk/pharmacophore/PharmacophoreBondTest.java
test_class.identifier: PharmacophoreBondTest
test_case.body: @Test
      public void testGetBondLength() {
          PharmacophoreAtom patom1 = new PharmacophoreAtom("[CX2]N", "Amine", new Point3d(0, 0, 0));
          PharmacophoreAtom patom2 = new PharmacophoreAtom("c1ccccc1", "Aromatic", new Point3d(1, 1, 1));
          PharmacophoreBond pbond = new PharmacophoreBond(patom1, patom2);
          Assert.assertEquals(1.732051, pbond.getBondLength(), 0.00001);
      }
test_case.class_method_signature: PharmacophoreBondTest.testGetBondLength()
test_case.full_signature: @Test public void testGetBondLength()
test_case.identifier: testGetBondLength
test_case.invocations: assertEquals getBondLength
test_case.modifiers: @Test public
test_case.parameters: ()
test_case.return: void
test_case.signature: void testGetBondLength()
focal_class.file: tool/pcore/src/main/java/org/openscience/cdk/pharmacophore/PharmacophoreBond.java
focal_class.identifier: PharmacophoreBond
focal_class.class_method_signature: PharmacophoreBond.PharmacophoreBond(PharmacophoreAtom patom1, PharmacophoreAtom patom2)
focal_class.full_signature: public  PharmacophoreBond(PharmacophoreAtom patom1, PharmacophoreAtom patom2)
focal_class.identifier: PharmacophoreBond
focal_class.modifiers: public
focal_class.parameters: (PharmacophoreAtom patom1, PharmacophoreAtom patom2)
focal_class.signature:  PharmacophoreBond(PharmacophoreAtom patom1, PharmacophoreAtom patom2)
focal_class.class_method_signature: PharmacophoreBond.get(IBond bond)
focal_class.full_signature: public static PharmacophoreBond get(IBond bond)
focal_class.identifier: get
focal_class.modifiers: public static
focal_class.parameters: (IBond bond)
focal_class.return: PharmacophoreBond
focal_class.signature: PharmacophoreBond get(IBond bond)
focal_class.class_method_signature: PharmacophoreBond.getBondLength()
focal_class.full_signature: public double getBondLength()
focal_class.identifier: getBondLength
focal_class.modifiers: public
focal_class.parameters: ()
focal_class.return: double
focal_class.signature: double getBondLength()
focal_class.superclass: extends Bond
focal_method.body: public double getBondLength() {
          PharmacophoreAtom atom1 = PharmacophoreAtom.get(getAtom(0));
          PharmacophoreAtom atom2 = PharmacophoreAtom.get(getAtom(1));
          return atom1.getPoint3d().distance(atom2.getPoint3d());
      }
focal_method.class_method_signature: PharmacophoreBond.getBondLength()
focal_method.full_signature: public double getBondLength()
focal_method.identifier: getBondLength
focal_method.invocations: get getAtom get getAtom distance getPoint3d getPoint3d
focal_method.modifiers: public
focal_method.parameters: ()
focal_method.return: double
focal_method.signature: double getBondLength()