test_class.declarator: standAlone = false
test_class.modifier: public
test_class.original_string: public boolean       standAlone = false;
test_class.type: boolean
test_class.var_name: standAlone
test_class.declarator: logger     = LoggingToolFactory.createLoggingTool(HydrogenPlacerTest.class)
test_class.modifier: private
test_class.original_string: private ILoggingTool logger     = LoggingToolFactory.createLoggingTool(HydrogenPlacerTest.class);
test_class.type: ILoggingTool
test_class.var_name: logger
test_class.file: tool/sdg/src/test/java/org/openscience/cdk/layout/HydrogenPlacerTest.java
test_class.identifier: HydrogenPlacerTest
test_class.superclass: extends CDKTestCase
test_case.body: @Test(expected = IllegalArgumentException.class)
      public void testNullContainer() {
          HydrogenPlacer hydrogenPlacer = new HydrogenPlacer();
          hydrogenPlacer.placeHydrogens2D(null, new Atom(), 1.5);
      }
test_case.class_method_signature: HydrogenPlacerTest.testNullContainer()
test_case.full_signature: @Test(expected = IllegalArgumentException.class) public void testNullContainer()
test_case.identifier: testNullContainer
test_case.invocations: placeHydrogens2D
test_case.modifiers: @Test(expected = IllegalArgumentException.class) public
test_case.parameters: ()
test_case.return: void
test_case.signature: void testNullContainer()
focal_class.declarator: logger = LoggingToolFactory.createLoggingTool(HydrogenPlacer.class)
focal_class.modifier: private static final
focal_class.original_string: private static final ILoggingTool logger = LoggingToolFactory.createLoggingTool(HydrogenPlacer.class);
focal_class.type: ILoggingTool
focal_class.var_name: logger
focal_class.file: tool/sdg/src/main/java/org/openscience/cdk/layout/HydrogenPlacer.java
focal_class.identifier: HydrogenPlacer
focal_class.class_method_signature: HydrogenPlacer.placeHydrogens2D(final IAtomContainer container, final double bondLength)
focal_class.full_signature: public void placeHydrogens2D(final IAtomContainer container, final double bondLength)
focal_class.identifier: placeHydrogens2D
focal_class.modifiers: public
focal_class.parameters: (final IAtomContainer container, final double bondLength)
focal_class.return: void
focal_class.signature: void placeHydrogens2D(final IAtomContainer container, final double bondLength)
focal_class.class_method_signature: HydrogenPlacer.placeHydrogens2D(IAtomContainer container, IAtom atom)
focal_class.full_signature: public void placeHydrogens2D(IAtomContainer container, IAtom atom)
focal_class.identifier: placeHydrogens2D
focal_class.modifiers: public
focal_class.parameters: (IAtomContainer container, IAtom atom)
focal_class.return: void
focal_class.signature: void placeHydrogens2D(IAtomContainer container, IAtom atom)
focal_class.class_method_signature: HydrogenPlacer.placeHydrogens2D(IAtomContainer container, IAtom atom, double bondLength)
focal_class.full_signature: public void placeHydrogens2D(IAtomContainer container, IAtom atom, double bondLength)
focal_class.identifier: placeHydrogens2D
focal_class.modifiers: public
focal_class.parameters: (IAtomContainer container, IAtom atom, double bondLength)
focal_class.return: void
focal_class.signature: void placeHydrogens2D(IAtomContainer container, IAtom atom, double bondLength)
focal_method.body: public void placeHydrogens2D(final IAtomContainer container, final double bondLength) {
          logger.debug("placing hydrogens on all atoms");
          for (IAtom atom : container.atoms()) {
              // only place hydrogens for atoms which have coordinates
              if (atom.getPoint2d() != null) {
                  placeHydrogens2D(container, atom, bondLength);
              }
          }
          logger.debug("hydrogen placement complete");
      }
focal_method.class_method_signature: HydrogenPlacer.placeHydrogens2D(final IAtomContainer container, final double bondLength)
focal_method.full_signature: public void placeHydrogens2D(final IAtomContainer container, final double bondLength)
focal_method.identifier: placeHydrogens2D
focal_method.invocations: debug atoms getPoint2d placeHydrogens2D debug
focal_method.modifiers: public
focal_method.parameters: (final IAtomContainer container, final double bondLength)
focal_method.return: void
focal_method.signature: void placeHydrogens2D(final IAtomContainer container, final double bondLength)