test_class.declarator: logger = LoggingToolFactory.createLoggingTool(MDLRXNReaderTest.class)
test_class.modifier: private static
test_class.original_string: private static ILoggingTool logger = LoggingToolFactory.createLoggingTool(MDLRXNReaderTest.class);
test_class.type: ILoggingTool
test_class.var_name: logger
test_class.file: storage/ctab/src/test/java/org/openscience/cdk/io/MDLRXNReaderTest.java
test_class.identifier: MDLRXNReaderTest
test_class.superclass: extends SimpleChemObjectReaderTest
test_case.body: @Test
      public void testAccepts() {
          MDLRXNReader reader = new MDLRXNReader();
          Assert.assertTrue(reader.accepts(ChemFile.class));
          Assert.assertTrue(reader.accepts(ChemModel.class));
          Assert.assertTrue(reader.accepts(Reaction.class));
          Assert.assertTrue(reader.accepts(ReactionSet.class));
          Assert.assertFalse(reader.accepts(AtomContainerSet.class));
          Assert.assertFalse(reader.accepts(AtomContainer.class));
      }
test_case.class_method_signature: MDLRXNReaderTest.testAccepts()
test_case.full_signature: @Test public void testAccepts()
test_case.identifier: testAccepts
test_case.invocations: assertTrue accepts assertTrue accepts assertTrue accepts assertTrue accepts assertFalse accepts assertFalse accepts
test_case.modifiers: @Test public
test_case.parameters: ()
test_case.return: void
test_case.signature: void testAccepts()
focal_class.declarator: input  = null
focal_class.original_string: BufferedReader              input  = null;
focal_class.type: BufferedReader
focal_class.var_name: input
focal_class.declarator: logger = LoggingToolFactory.createLoggingTool(MDLRXNReader.class)
focal_class.modifier: private static
focal_class.original_string: private static ILoggingTool logger = LoggingToolFactory.createLoggingTool(MDLRXNReader.class);
focal_class.type: ILoggingTool
focal_class.var_name: logger
focal_class.file: storage/ctab/src/main/java/org/openscience/cdk/io/MDLRXNReader.java
focal_class.identifier: MDLRXNReader
focal_class.class_method_signature: MDLRXNReader.MDLRXNReader(Reader in)
focal_class.full_signature: public  MDLRXNReader(Reader in)
focal_class.identifier: MDLRXNReader
focal_class.modifiers: public
focal_class.parameters: (Reader in)
focal_class.signature:  MDLRXNReader(Reader in)
focal_class.class_method_signature: MDLRXNReader.MDLRXNReader(Reader in, Mode mode)
focal_class.full_signature: public  MDLRXNReader(Reader in, Mode mode)
focal_class.identifier: MDLRXNReader
focal_class.modifiers: public
focal_class.parameters: (Reader in, Mode mode)
focal_class.signature:  MDLRXNReader(Reader in, Mode mode)
focal_class.class_method_signature: MDLRXNReader.MDLRXNReader(InputStream input)
focal_class.full_signature: public  MDLRXNReader(InputStream input)
focal_class.identifier: MDLRXNReader
focal_class.modifiers: public
focal_class.parameters: (InputStream input)
focal_class.signature:  MDLRXNReader(InputStream input)
focal_class.class_method_signature: MDLRXNReader.MDLRXNReader(InputStream input, Mode mode)
focal_class.full_signature: public  MDLRXNReader(InputStream input, Mode mode)
focal_class.identifier: MDLRXNReader
focal_class.modifiers: public
focal_class.parameters: (InputStream input, Mode mode)
focal_class.signature:  MDLRXNReader(InputStream input, Mode mode)
focal_class.class_method_signature: MDLRXNReader.MDLRXNReader()
focal_class.full_signature: public  MDLRXNReader()
focal_class.identifier: MDLRXNReader
focal_class.modifiers: public
focal_class.parameters: ()
focal_class.signature:  MDLRXNReader()
focal_class.class_method_signature: MDLRXNReader.getFormat()
focal_class.full_signature: @Override public IResourceFormat getFormat()
focal_class.identifier: getFormat
focal_class.modifiers: @Override public
focal_class.parameters: ()
focal_class.return: IResourceFormat
focal_class.signature: IResourceFormat getFormat()
focal_class.class_method_signature: MDLRXNReader.setReader(Reader input)
focal_class.full_signature: @Override public void setReader(Reader input)
focal_class.identifier: setReader
focal_class.modifiers: @Override public
focal_class.parameters: (Reader input)
focal_class.return: void
focal_class.signature: void setReader(Reader input)
focal_class.class_method_signature: MDLRXNReader.setReader(InputStream input)
focal_class.full_signature: @Override public void setReader(InputStream input)
focal_class.identifier: setReader
focal_class.modifiers: @Override public
focal_class.parameters: (InputStream input)
focal_class.return: void
focal_class.signature: void setReader(InputStream input)
focal_class.class_method_signature: MDLRXNReader.accepts(Class<? extends IChemObject> classObject)
focal_class.full_signature: @Override public boolean accepts(Class<? extends IChemObject> classObject)
focal_class.identifier: accepts
focal_class.modifiers: @Override public
focal_class.parameters: (Class<? extends IChemObject> classObject)
focal_class.return: boolean
focal_class.signature: boolean accepts(Class<? extends IChemObject> classObject)
focal_class.class_method_signature: MDLRXNReader.read(T object)
focal_class.full_signature: @Override public T read(T object)
focal_class.identifier: read
focal_class.modifiers: @Override public
focal_class.parameters: (T object)
focal_class.return: T
focal_class.signature: T read(T object)
focal_class.class_method_signature: MDLRXNReader.accepts(IChemObject object)
focal_class.full_signature: public boolean accepts(IChemObject object)
focal_class.identifier: accepts
focal_class.modifiers: public
focal_class.parameters: (IChemObject object)
focal_class.return: boolean
focal_class.signature: boolean accepts(IChemObject object)
focal_class.class_method_signature: MDLRXNReader.readChemFile(IChemFile chemFile)
focal_class.full_signature: private IChemFile readChemFile(IChemFile chemFile)
focal_class.identifier: readChemFile
focal_class.modifiers: private
focal_class.parameters: (IChemFile chemFile)
focal_class.return: IChemFile
focal_class.signature: IChemFile readChemFile(IChemFile chemFile)
focal_class.class_method_signature: MDLRXNReader.readChemModel(IChemModel chemModel)
focal_class.full_signature: private IChemModel readChemModel(IChemModel chemModel)
focal_class.identifier: readChemModel
focal_class.modifiers: private
focal_class.parameters: (IChemModel chemModel)
focal_class.return: IChemModel
focal_class.signature: IChemModel readChemModel(IChemModel chemModel)
focal_class.class_method_signature: MDLRXNReader.readReactionSet(IReactionSet setOfReactions)
focal_class.full_signature: private IReactionSet readReactionSet(IReactionSet setOfReactions)
focal_class.identifier: readReactionSet
focal_class.modifiers: private
focal_class.parameters: (IReactionSet setOfReactions)
focal_class.return: IReactionSet
focal_class.signature: IReactionSet readReactionSet(IReactionSet setOfReactions)
focal_class.class_method_signature: MDLRXNReader.readReaction(IChemObjectBuilder builder)
focal_class.full_signature: private IReaction readReaction(IChemObjectBuilder builder)
focal_class.identifier: readReaction
focal_class.modifiers: private
focal_class.parameters: (IChemObjectBuilder builder)
focal_class.return: IReaction
focal_class.signature: IReaction readReaction(IChemObjectBuilder builder)
focal_class.class_method_signature: MDLRXNReader.close()
focal_class.full_signature: @Override public void close()
focal_class.identifier: close
focal_class.modifiers: @Override public
focal_class.parameters: ()
focal_class.return: void
focal_class.signature: void close()
focal_class.superclass: extends DefaultChemObjectReader
focal_method.body: @Override
      public boolean accepts(Class<? extends IChemObject> classObject) {
          if (IChemFile.class.equals(classObject)) return true;
          if (IChemModel.class.equals(classObject)) return true;
          if (IReaction.class.equals(classObject)) return true;
          if (IReactionSet.class.equals(classObject)) return true;
          Class<?>[] interfaces = classObject.getInterfaces();
          for (int i = 0; i < interfaces.length; i++) {
              if (IChemModel.class.equals(interfaces[i])) return true;
              if (IChemFile.class.equals(interfaces[i])) return true;
              if (IReaction.class.equals(interfaces[i])) return true;
              if (IReactionSet.class.equals(interfaces[i])) return true;
          }
          Class superClass = classObject.getSuperclass();
          if (superClass != null) return this.accepts(superClass);
          return false;
      }
focal_method.class_method_signature: MDLRXNReader.accepts(Class<? extends IChemObject> classObject)
focal_method.full_signature: @Override public boolean accepts(Class<? extends IChemObject> classObject)
focal_method.identifier: accepts
focal_method.invocations: equals equals equals equals getInterfaces equals equals equals equals getSuperclass accepts
focal_method.modifiers: @Override public
focal_method.parameters: (Class<? extends IChemObject> classObject)
focal_method.return: boolean
focal_method.signature: boolean accepts(Class<? extends IChemObject> classObject)