test_class.declarator: base
test_class.modifier: private
test_class.original_string: private IAtomContainer   base;
test_class.type: IAtomContainer
test_class.var_name: base
test_class.declarator: confs
test_class.modifier: private
test_class.original_string: private IAtomContainer[] confs;
test_class.type: IAtomContainer[]
test_class.var_name: confs
test_class.declarator: natom  = 10
test_class.modifier: private static
test_class.original_string: private static int       natom  = 10;
test_class.type: int
test_class.var_name: natom
test_class.declarator: nconfs = 20
test_class.modifier: private static
test_class.original_string: private static int       nconfs = 20;
test_class.type: int
test_class.var_name: nconfs
test_class.declarator: rnd    = new Random()
test_class.modifier: private static
test_class.original_string: private static Random    rnd    = new Random();
test_class.type: Random
test_class.var_name: rnd
test_class.file: base/data/src/test/java/org/openscience/cdk/ConformerContainerTest.java
test_class.identifier: ConformerContainerTest
test_class.superclass: extends CDKTestCase
test_case.body: @Test(expected = IndexOutOfBoundsException.class)
      public void testGet_int() {
          ConformerContainer container = new ConformerContainer(confs);
          container.get(100);
      }
test_case.class_method_signature: ConformerContainerTest.testGet_int()
test_case.full_signature: @Test(expected = IndexOutOfBoundsException.class) public void testGet_int()
test_case.identifier: testGet_int
test_case.invocations: get
test_case.modifiers: @Test(expected = IndexOutOfBoundsException.class) public
test_case.parameters: ()
test_case.return: void
test_case.signature: void testGet_int()
focal_class.declarator: atomContainer = null
focal_class.modifier: private
focal_class.original_string: private IAtomContainer  atomContainer = null;
focal_class.type: IAtomContainer
focal_class.var_name: atomContainer
focal_class.declarator: title         = null
focal_class.modifier: private
focal_class.original_string: private String          title         = null;
focal_class.type: String
focal_class.var_name: title
focal_class.declarator: coordinates
focal_class.modifier: private
focal_class.original_string: private List<Point3d[]> coordinates;
focal_class.type: List<Point3d[]>
focal_class.var_name: coordinates
focal_class.file: base/data/src/main/java/org/openscience/cdk/ConformerContainer.java
focal_class.identifier: ConformerContainer
focal_class.interfaces: implements List<IAtomContainer>
focal_class.class_method_signature: ConformerContainer.getCoordinateList(IAtomContainer atomContainer)
focal_class.full_signature: private Point3d[] getCoordinateList(IAtomContainer atomContainer)
focal_class.identifier: getCoordinateList
focal_class.modifiers: private
focal_class.parameters: (IAtomContainer atomContainer)
focal_class.return: Point3d[]
focal_class.signature: Point3d[] getCoordinateList(IAtomContainer atomContainer)
focal_class.class_method_signature: ConformerContainer.ConformerContainer()
focal_class.full_signature: public  ConformerContainer()
focal_class.identifier: ConformerContainer
focal_class.modifiers: public
focal_class.parameters: ()
focal_class.signature:  ConformerContainer()
focal_class.class_method_signature: ConformerContainer.ConformerContainer(IAtomContainer atomContainer)
focal_class.full_signature: public  ConformerContainer(IAtomContainer atomContainer)
focal_class.identifier: ConformerContainer
focal_class.modifiers: public
focal_class.parameters: (IAtomContainer atomContainer)
focal_class.signature:  ConformerContainer(IAtomContainer atomContainer)
focal_class.class_method_signature: ConformerContainer.ConformerContainer(IAtomContainer[] atomContainers)
focal_class.full_signature: public  ConformerContainer(IAtomContainer[] atomContainers)
focal_class.identifier: ConformerContainer
focal_class.modifiers: public
focal_class.parameters: (IAtomContainer[] atomContainers)
focal_class.signature:  ConformerContainer(IAtomContainer[] atomContainers)
focal_class.class_method_signature: ConformerContainer.getTitle()
focal_class.full_signature: public String getTitle()
focal_class.identifier: getTitle
focal_class.modifiers: public
focal_class.parameters: ()
focal_class.return: String
focal_class.signature: String getTitle()
focal_class.class_method_signature: ConformerContainer.size()
focal_class.full_signature: @Override public int size()
focal_class.identifier: size
focal_class.modifiers: @Override public
focal_class.parameters: ()
focal_class.return: int
focal_class.signature: int size()
focal_class.class_method_signature: ConformerContainer.isEmpty()
focal_class.full_signature: @Override public boolean isEmpty()
focal_class.identifier: isEmpty
focal_class.modifiers: @Override public
focal_class.parameters: ()
focal_class.return: boolean
focal_class.signature: boolean isEmpty()
focal_class.class_method_signature: ConformerContainer.contains(Object o)
focal_class.full_signature: @Override public boolean contains(Object o)
focal_class.identifier: contains
focal_class.modifiers: @Override public
focal_class.parameters: (Object o)
focal_class.return: boolean
focal_class.signature: boolean contains(Object o)
focal_class.class_method_signature: ConformerContainer.iterator()
focal_class.full_signature: @Override public Iterator<IAtomContainer> iterator()
focal_class.identifier: iterator
focal_class.modifiers: @Override public
focal_class.parameters: ()
focal_class.return: Iterator<IAtomContainer>
focal_class.signature: Iterator<IAtomContainer> iterator()
focal_class.class_method_signature: ConformerContainer.toArray()
focal_class.full_signature: @Override public Object[] toArray()
focal_class.identifier: toArray
focal_class.modifiers: @Override public
focal_class.parameters: ()
focal_class.return: Object[]
focal_class.signature: Object[] toArray()
focal_class.class_method_signature: ConformerContainer.toArray(IAtomContainer[] ts)
focal_class.full_signature: @Override public IAtomContainer[] toArray(IAtomContainer[] ts)
focal_class.identifier: toArray
focal_class.modifiers: @Override public
focal_class.parameters: (IAtomContainer[] ts)
focal_class.return: IAtomContainer[]
focal_class.signature: IAtomContainer[] toArray(IAtomContainer[] ts)
focal_class.class_method_signature: ConformerContainer.add(IAtomContainer atomContainer)
focal_class.full_signature: @Override public boolean add(IAtomContainer atomContainer)
focal_class.identifier: add
focal_class.modifiers: @Override public
focal_class.parameters: (IAtomContainer atomContainer)
focal_class.return: boolean
focal_class.signature: boolean add(IAtomContainer atomContainer)
focal_class.class_method_signature: ConformerContainer.remove(Object o)
focal_class.full_signature: @Override public boolean remove(Object o)
focal_class.identifier: remove
focal_class.modifiers: @Override public
focal_class.parameters: (Object o)
focal_class.return: boolean
focal_class.signature: boolean remove(Object o)
focal_class.class_method_signature: ConformerContainer.containsAll(Collection<?> objects)
focal_class.full_signature: @Override public boolean containsAll(Collection<?> objects)
focal_class.identifier: containsAll
focal_class.modifiers: @Override public
focal_class.parameters: (Collection<?> objects)
focal_class.return: boolean
focal_class.signature: boolean containsAll(Collection<?> objects)
focal_class.class_method_signature: ConformerContainer.addAll(Collection<? extends IAtomContainer> atomContainers)
focal_class.full_signature: @Override public boolean addAll(Collection<? extends IAtomContainer> atomContainers)
focal_class.identifier: addAll
focal_class.modifiers: @Override public
focal_class.parameters: (Collection<? extends IAtomContainer> atomContainers)
focal_class.return: boolean
focal_class.signature: boolean addAll(Collection<? extends IAtomContainer> atomContainers)
focal_class.class_method_signature: ConformerContainer.addAll(int i, Collection<? extends IAtomContainer> iAtomContainers)
focal_class.full_signature: @Override public boolean addAll(int i, Collection<? extends IAtomContainer> iAtomContainers)
focal_class.identifier: addAll
focal_class.modifiers: @Override public
focal_class.parameters: (int i, Collection<? extends IAtomContainer> iAtomContainers)
focal_class.return: boolean
focal_class.signature: boolean addAll(int i, Collection<? extends IAtomContainer> iAtomContainers)
focal_class.class_method_signature: ConformerContainer.removeAll(Collection<?> objects)
focal_class.full_signature: @Override public boolean removeAll(Collection<?> objects)
focal_class.identifier: removeAll
focal_class.modifiers: @Override public
focal_class.parameters: (Collection<?> objects)
focal_class.return: boolean
focal_class.signature: boolean removeAll(Collection<?> objects)
focal_class.class_method_signature: ConformerContainer.retainAll(Collection<?> objects)
focal_class.full_signature: @Override public boolean retainAll(Collection<?> objects)
focal_class.identifier: retainAll
focal_class.modifiers: @Override public
focal_class.parameters: (Collection<?> objects)
focal_class.return: boolean
focal_class.signature: boolean retainAll(Collection<?> objects)
focal_class.class_method_signature: ConformerContainer.clear()
focal_class.full_signature: @Override public void clear()
focal_class.identifier: clear
focal_class.modifiers: @Override public
focal_class.parameters: ()
focal_class.return: void
focal_class.signature: void clear()
focal_class.class_method_signature: ConformerContainer.get(int i)
focal_class.full_signature: @Override public IAtomContainer get(int i)
focal_class.identifier: get
focal_class.modifiers: @Override public
focal_class.parameters: (int i)
focal_class.return: IAtomContainer
focal_class.signature: IAtomContainer get(int i)
focal_class.class_method_signature: ConformerContainer.set(int i, IAtomContainer atomContainer)
focal_class.full_signature: @Override public IAtomContainer set(int i, IAtomContainer atomContainer)
focal_class.identifier: set
focal_class.modifiers: @Override public
focal_class.parameters: (int i, IAtomContainer atomContainer)
focal_class.return: IAtomContainer
focal_class.signature: IAtomContainer set(int i, IAtomContainer atomContainer)
focal_class.class_method_signature: ConformerContainer.add(int i, IAtomContainer atomContainer)
focal_class.full_signature: @Override public void add(int i, IAtomContainer atomContainer)
focal_class.identifier: add
focal_class.modifiers: @Override public
focal_class.parameters: (int i, IAtomContainer atomContainer)
focal_class.return: void
focal_class.signature: void add(int i, IAtomContainer atomContainer)
focal_class.class_method_signature: ConformerContainer.remove(int i)
focal_class.full_signature: @Override public IAtomContainer remove(int i)
focal_class.identifier: remove
focal_class.modifiers: @Override public
focal_class.parameters: (int i)
focal_class.return: IAtomContainer
focal_class.signature: IAtomContainer remove(int i)
focal_class.class_method_signature: ConformerContainer.indexOf(Object o)
focal_class.full_signature: @Override public int indexOf(Object o)
focal_class.identifier: indexOf
focal_class.modifiers: @Override public
focal_class.parameters: (Object o)
focal_class.return: int
focal_class.signature: int indexOf(Object o)
focal_class.class_method_signature: ConformerContainer.lastIndexOf(Object o)
focal_class.full_signature: @Override public int lastIndexOf(Object o)
focal_class.identifier: lastIndexOf
focal_class.modifiers: @Override public
focal_class.parameters: (Object o)
focal_class.return: int
focal_class.signature: int lastIndexOf(Object o)
focal_class.class_method_signature: ConformerContainer.listIterator()
focal_class.full_signature: @Override public ListIterator<IAtomContainer> listIterator()
focal_class.identifier: listIterator
focal_class.modifiers: @Override public
focal_class.parameters: ()
focal_class.return: ListIterator<IAtomContainer>
focal_class.signature: ListIterator<IAtomContainer> listIterator()
focal_class.class_method_signature: ConformerContainer.listIterator(int i)
focal_class.full_signature: @Override public ListIterator<IAtomContainer> listIterator(int i)
focal_class.identifier: listIterator
focal_class.modifiers: @Override public
focal_class.parameters: (int i)
focal_class.return: ListIterator<IAtomContainer>
focal_class.signature: ListIterator<IAtomContainer> listIterator(int i)
focal_class.class_method_signature: ConformerContainer.subList(int i, int i1)
focal_class.full_signature: @Override public List<IAtomContainer> subList(int i, int i1)
focal_class.identifier: subList
focal_class.modifiers: @Override public
focal_class.parameters: (int i, int i1)
focal_class.return: List<IAtomContainer>
focal_class.signature: List<IAtomContainer> subList(int i, int i1)
focal_method.body: @Override
      public IAtomContainer get(int i) {
          Point3d[] tmp = coordinates.get(i);
          for (int j = 0; j < atomContainer.getAtomCount(); j++) {
              IAtom atom = atomContainer.getAtom(j);
              atom.setPoint3d(tmp[j]);
          }
          return atomContainer;
      }
focal_method.class_method_signature: ConformerContainer.get(int i)
focal_method.full_signature: @Override public IAtomContainer get(int i)
focal_method.identifier: get
focal_method.invocations: get getAtomCount getAtom setPoint3d
focal_method.modifiers: @Override public
focal_method.parameters: (int i)
focal_method.return: IAtomContainer
focal_method.signature: IAtomContainer get(int i)