test_class.declarator: builder = SilentChemObjectBuilder.getInstance()
test_class.modifier: private final static
test_class.original_string: private final static IChemObjectBuilder builder = SilentChemObjectBuilder.getInstance();
test_class.type: IChemObjectBuilder
test_class.var_name: builder
test_class.file: tool/formula/src/test/java/org/openscience/cdk/formula/IsotopePatternGeneratorTest.java
test_class.identifier: IsotopePatternGeneratorTest
test_class.superclass: extends CDKTestCase
test_case.body: @Test
      public void testIsotopePatternGenerator() {
          IsotopePatternGenerator isotopeGe = new IsotopePatternGenerator();
          Assert.assertNotNull(isotopeGe);
      }
test_case.class_method_signature: IsotopePatternGeneratorTest.testIsotopePatternGenerator()
test_case.full_signature: @Test public void testIsotopePatternGenerator()
test_case.identifier: testIsotopePatternGenerator
test_case.invocations: assertNotNull
test_case.modifiers: @Test public
test_case.parameters: ()
test_case.return: void
test_case.signature: void testIsotopePatternGenerator()
focal_class.declarator: builder        = null
focal_class.modifier: private
focal_class.original_string: private IChemObjectBuilder builder        = null;
focal_class.type: IChemObjectBuilder
focal_class.var_name: builder
focal_class.declarator: isoFactory
focal_class.modifier: private
focal_class.original_string: private IsotopeFactory     isoFactory;
focal_class.type: IsotopeFactory
focal_class.var_name: isoFactory
focal_class.declarator: logger         = LoggingToolFactory.createLoggingTool(IsotopePatternGenerator.class)
focal_class.modifier: private
focal_class.original_string: private ILoggingTool       logger         = LoggingToolFactory.createLoggingTool(IsotopePatternGenerator.class);
focal_class.type: ILoggingTool
focal_class.var_name: logger
focal_class.declarator: minIntensity = 0.00001
focal_class.modifier: private
focal_class.original_string: private double  minIntensity = 0.00001;
focal_class.type: double
focal_class.var_name: minIntensity
focal_class.declarator: minAbundance = 1E-10
focal_class.modifier: private
focal_class.original_string: private double  minAbundance = 1E-10;
focal_class.type: double
focal_class.var_name: minAbundance
focal_class.declarator: resolution   = 0.00005f
focal_class.modifier: private
focal_class.original_string: private double  resolution   = 0.00005f;
focal_class.type: double
focal_class.var_name: resolution
focal_class.declarator: storeFormula = false
focal_class.modifier: private
focal_class.original_string: private boolean storeFormula = false;
focal_class.type: boolean
focal_class.var_name: storeFormula
focal_class.file: tool/formula/src/main/java/org/openscience/cdk/formula/IsotopePatternGenerator.java
focal_class.identifier: IsotopePatternGenerator
focal_class.class_method_signature: IsotopePatternGenerator.IsotopePatternGenerator()
focal_class.full_signature: public  IsotopePatternGenerator()
focal_class.identifier: IsotopePatternGenerator
focal_class.modifiers: public
focal_class.parameters: ()
focal_class.signature:  IsotopePatternGenerator()
focal_class.class_method_signature: IsotopePatternGenerator.IsotopePatternGenerator(double minIntensity)
focal_class.full_signature: public  IsotopePatternGenerator(double minIntensity)
focal_class.identifier: IsotopePatternGenerator
focal_class.modifiers: public
focal_class.parameters: (double minIntensity)
focal_class.signature:  IsotopePatternGenerator(double minIntensity)
focal_class.class_method_signature: IsotopePatternGenerator.setMinIntensity(double minIntensity)
focal_class.full_signature: public IsotopePatternGenerator setMinIntensity(double minIntensity)
focal_class.identifier: setMinIntensity
focal_class.modifiers: public
focal_class.parameters: (double minIntensity)
focal_class.return: IsotopePatternGenerator
focal_class.signature: IsotopePatternGenerator setMinIntensity(double minIntensity)
focal_class.class_method_signature: IsotopePatternGenerator.setMinResolution(double resolution)
focal_class.full_signature: public IsotopePatternGenerator setMinResolution(double resolution)
focal_class.identifier: setMinResolution
focal_class.modifiers: public
focal_class.parameters: (double resolution)
focal_class.return: IsotopePatternGenerator
focal_class.signature: IsotopePatternGenerator setMinResolution(double resolution)
focal_class.class_method_signature: IsotopePatternGenerator.setStoreFormulas(boolean storeFormula)
focal_class.full_signature: public IsotopePatternGenerator setStoreFormulas(boolean storeFormula)
focal_class.identifier: setStoreFormulas
focal_class.modifiers: public
focal_class.parameters: (boolean storeFormula)
focal_class.return: IsotopePatternGenerator
focal_class.signature: IsotopePatternGenerator setStoreFormulas(boolean storeFormula)
focal_class.class_method_signature: IsotopePatternGenerator.getIsotopes(IMolecularFormula molFor)
focal_class.full_signature: public IsotopePattern getIsotopes(IMolecularFormula molFor)
focal_class.identifier: getIsotopes
focal_class.modifiers: public
focal_class.parameters: (IMolecularFormula molFor)
focal_class.return: IsotopePattern
focal_class.signature: IsotopePattern getIsotopes(IMolecularFormula molFor)
focal_class.class_method_signature: IsotopePatternGenerator.asFormula(IIsotope isotope)
focal_class.full_signature: private IMolecularFormula asFormula(IIsotope isotope)
focal_class.identifier: asFormula
focal_class.modifiers: private
focal_class.parameters: (IIsotope isotope)
focal_class.return: IMolecularFormula
focal_class.signature: IMolecularFormula asFormula(IIsotope isotope)
focal_class.class_method_signature: IsotopePatternGenerator.union(IMolecularFormula a, IMolecularFormula b)
focal_class.full_signature: private IMolecularFormula union(IMolecularFormula a, IMolecularFormula b)
focal_class.identifier: union
focal_class.modifiers: private
focal_class.parameters: (IMolecularFormula a, IMolecularFormula b)
focal_class.return: IMolecularFormula
focal_class.signature: IMolecularFormula union(IMolecularFormula a, IMolecularFormula b)
focal_class.class_method_signature: IsotopePatternGenerator.findExisting(List<IsotopeContainer> containers,
                                                   double mass, double treshhold)
focal_class.full_signature: private static IsotopeContainer findExisting(List<IsotopeContainer> containers,
                                                   double mass, double treshhold)
focal_class.identifier: findExisting
focal_class.modifiers: private static
focal_class.parameters: (List<IsotopeContainer> containers,
                                                   double mass, double treshhold)
focal_class.return: IsotopeContainer
focal_class.signature: IsotopeContainer findExisting(List<IsotopeContainer> containers,
                                                   double mass, double treshhold)
focal_class.class_method_signature: IsotopePatternGenerator.addDistinctFormula(IsotopeContainer container, IMolecularFormula mf)
focal_class.full_signature: private void addDistinctFormula(IsotopeContainer container, IMolecularFormula mf)
focal_class.identifier: addDistinctFormula
focal_class.modifiers: private
focal_class.parameters: (IsotopeContainer container, IMolecularFormula mf)
focal_class.return: void
focal_class.signature: void addDistinctFormula(IsotopeContainer container, IMolecularFormula mf)
focal_class.class_method_signature: IsotopePatternGenerator.calculateAbundanceAndMass(IsotopePattern current, List<IsotopeContainer> additional)
focal_class.full_signature: private IsotopePattern calculateAbundanceAndMass(IsotopePattern current, List<IsotopeContainer> additional)
focal_class.identifier: calculateAbundanceAndMass
focal_class.modifiers: private
focal_class.parameters: (IsotopePattern current, List<IsotopeContainer> additional)
focal_class.return: IsotopePattern
focal_class.signature: IsotopePattern calculateAbundanceAndMass(IsotopePattern current, List<IsotopeContainer> additional)
focal_class.class_method_signature: IsotopePatternGenerator.cleanAbundance(IsotopePattern isopattern, double minIntensity)
focal_class.full_signature: private IsotopePattern cleanAbundance(IsotopePattern isopattern, double minIntensity)
focal_class.identifier: cleanAbundance
focal_class.modifiers: private
focal_class.parameters: (IsotopePattern isopattern, double minIntensity)
focal_class.return: IsotopePattern
focal_class.signature: IsotopePattern cleanAbundance(IsotopePattern isopattern, double minIntensity)
focal_method.body: public IsotopePatternGenerator() {
          this(0.1);
      }
focal_method.class_method_signature: IsotopePatternGenerator.IsotopePatternGenerator()
focal_method.full_signature: public  IsotopePatternGenerator()
focal_method.identifier: IsotopePatternGenerator
focal_method.modifiers: public
focal_method.parameters: ()
focal_method.signature:  IsotopePatternGenerator()