test_class.declarator: logger = LoggingToolFactory.createLoggingTool(IteratingSMILESReaderTest.class)
test_class.modifier: private static
test_class.original_string: private static ILoggingTool logger = LoggingToolFactory.createLoggingTool(IteratingSMILESReaderTest.class);
test_class.type: ILoggingTool
test_class.var_name: logger
test_class.file: storage/smiles/src/test/java/org/openscience/cdk/io/iterator/IteratingSMILESReaderTest.java
test_class.identifier: IteratingSMILESReaderTest
test_class.superclass: extends CDKTestCase
test_case.body: @Test
      public void testGetFormat() {
          String filename = "data/smiles/test2.smi";
          logger.info("Testing: " + filename);
          InputStream ins = this.getClass().getClassLoader().getResourceAsStream(filename);
          IteratingSMILESReader reader = new IteratingSMILESReader(ins, DefaultChemObjectBuilder.getInstance());
          IResourceFormat format = reader.getFormat();
          assertTrue(format instanceof SMILESFormat);
      }
test_case.class_method_signature: IteratingSMILESReaderTest.testGetFormat()
test_case.full_signature: @Test public void testGetFormat()
test_case.identifier: testGetFormat
test_case.invocations: info getResourceAsStream getClassLoader getClass getInstance getFormat assertTrue
test_case.modifiers: @Test public
test_case.parameters: ()
test_case.return: void
test_case.signature: void testGetFormat()
focal_class.declarator: input
focal_class.modifier: private
focal_class.original_string: private BufferedReader           input;
focal_class.type: BufferedReader
focal_class.var_name: input
focal_class.declarator: logger           = LoggingToolFactory
                                                                .createLoggingTool(IteratingSMILESReader.class)
focal_class.modifier: private static
focal_class.original_string: private static ILoggingTool      logger           = LoggingToolFactory
                                                                .createLoggingTool(IteratingSMILESReader.class);
focal_class.type: ILoggingTool
focal_class.var_name: logger
focal_class.declarator: sp               = null
focal_class.modifier: private
focal_class.original_string: private SmilesParser             sp               = null;
focal_class.type: SmilesParser
focal_class.var_name: sp
focal_class.declarator: nextAvailableIsKnown
focal_class.modifier: private
focal_class.original_string: private boolean                  nextAvailableIsKnown;
focal_class.type: boolean
focal_class.var_name: nextAvailableIsKnown
focal_class.declarator: hasNext
focal_class.modifier: private
focal_class.original_string: private boolean                  hasNext;
focal_class.type: boolean
focal_class.var_name: hasNext
focal_class.declarator: nextMolecule
focal_class.modifier: private
focal_class.original_string: private IAtomContainer           nextMolecule;
focal_class.type: IAtomContainer
focal_class.var_name: nextMolecule
focal_class.declarator: builder
focal_class.modifier: private final
focal_class.original_string: private final IChemObjectBuilder builder;
focal_class.type: IChemObjectBuilder
focal_class.var_name: builder
focal_class.declarator: BAD_SMILES_INPUT = "bad.smiles.input"
focal_class.modifier: public static final
focal_class.original_string: public static final String       BAD_SMILES_INPUT = "bad.smiles.input";
focal_class.type: String
focal_class.var_name: BAD_SMILES_INPUT
focal_class.file: storage/smiles/src/main/java/org/openscience/cdk/io/iterator/IteratingSMILESReader.java
focal_class.identifier: IteratingSMILESReader
focal_class.class_method_signature: IteratingSMILESReader.IteratingSMILESReader(Reader in, IChemObjectBuilder builder)
focal_class.full_signature: public  IteratingSMILESReader(Reader in, IChemObjectBuilder builder)
focal_class.identifier: IteratingSMILESReader
focal_class.modifiers: public
focal_class.parameters: (Reader in, IChemObjectBuilder builder)
focal_class.signature:  IteratingSMILESReader(Reader in, IChemObjectBuilder builder)
focal_class.class_method_signature: IteratingSMILESReader.IteratingSMILESReader(InputStream in, IChemObjectBuilder builder)
focal_class.full_signature: public  IteratingSMILESReader(InputStream in, IChemObjectBuilder builder)
focal_class.identifier: IteratingSMILESReader
focal_class.modifiers: public
focal_class.parameters: (InputStream in, IChemObjectBuilder builder)
focal_class.signature:  IteratingSMILESReader(InputStream in, IChemObjectBuilder builder)
focal_class.class_method_signature: IteratingSMILESReader.getFormat()
focal_class.full_signature: @Override public IResourceFormat getFormat()
focal_class.identifier: getFormat
focal_class.modifiers: @Override public
focal_class.parameters: ()
focal_class.return: IResourceFormat
focal_class.signature: IResourceFormat getFormat()
focal_class.class_method_signature: IteratingSMILESReader.hasNext()
focal_class.full_signature: @Override public boolean hasNext()
focal_class.identifier: hasNext
focal_class.modifiers: @Override public
focal_class.parameters: ()
focal_class.return: boolean
focal_class.signature: boolean hasNext()
focal_class.class_method_signature: IteratingSMILESReader.suffix(final String line)
focal_class.full_signature: private String suffix(final String line)
focal_class.identifier: suffix
focal_class.modifiers: private
focal_class.parameters: (final String line)
focal_class.return: String
focal_class.signature: String suffix(final String line)
focal_class.class_method_signature: IteratingSMILESReader.readSmiles(final String line)
focal_class.full_signature: private IAtomContainer readSmiles(final String line)
focal_class.identifier: readSmiles
focal_class.modifiers: private
focal_class.parameters: (final String line)
focal_class.return: IAtomContainer
focal_class.signature: IAtomContainer readSmiles(final String line)
focal_class.class_method_signature: IteratingSMILESReader.next()
focal_class.full_signature: @Override public IAtomContainer next()
focal_class.identifier: next
focal_class.modifiers: @Override public
focal_class.parameters: ()
focal_class.return: IAtomContainer
focal_class.signature: IAtomContainer next()
focal_class.class_method_signature: IteratingSMILESReader.close()
focal_class.full_signature: @Override public void close()
focal_class.identifier: close
focal_class.modifiers: @Override public
focal_class.parameters: ()
focal_class.return: void
focal_class.signature: void close()
focal_class.class_method_signature: IteratingSMILESReader.remove()
focal_class.full_signature: @Override public void remove()
focal_class.identifier: remove
focal_class.modifiers: @Override public
focal_class.parameters: ()
focal_class.return: void
focal_class.signature: void remove()
focal_class.class_method_signature: IteratingSMILESReader.setReader(Reader reader)
focal_class.full_signature: @Override public void setReader(Reader reader)
focal_class.identifier: setReader
focal_class.modifiers: @Override public
focal_class.parameters: (Reader reader)
focal_class.return: void
focal_class.signature: void setReader(Reader reader)
focal_class.class_method_signature: IteratingSMILESReader.setReader(InputStream reader)
focal_class.full_signature: @Override public void setReader(InputStream reader)
focal_class.identifier: setReader
focal_class.modifiers: @Override public
focal_class.parameters: (InputStream reader)
focal_class.return: void
focal_class.signature: void setReader(InputStream reader)
focal_class.superclass: extends DefaultIteratingChemObjectReader<IAtomContainer>
focal_method.body: @Override
      public IResourceFormat getFormat() {
          return SMILESFormat.getInstance();
      }
focal_method.class_method_signature: IteratingSMILESReader.getFormat()
focal_method.full_signature: @Override public IResourceFormat getFormat()
focal_method.identifier: getFormat
focal_method.invocations: getInstance
focal_method.modifiers: @Override public
focal_method.parameters: ()
focal_method.return: IResourceFormat
focal_method.signature: IResourceFormat getFormat()