test_class.declarator: descriptor
test_class.original_string: ProtonAffinityHOSEDescriptor            descriptor;
test_class.type: ProtonAffinityHOSEDescriptor
test_class.var_name: descriptor
test_class.declarator: lpcheck = new LonePairElectronChecker()
test_class.original_string: LonePairElectronChecker                 lpcheck = new LonePairElectronChecker();
test_class.type: LonePairElectronChecker
test_class.var_name: lpcheck
test_class.declarator: builder = SilentChemObjectBuilder.getInstance()
test_class.modifier: private final static
test_class.original_string: private final static IChemObjectBuilder builder = SilentChemObjectBuilder.getInstance();
test_class.type: IChemObjectBuilder
test_class.var_name: builder
test_class.file: descriptor/qsaratomic/src/test/java/org/openscience/cdk/qsar/descriptors/atomic/ProtonAffinityHOSEDescriptorTest.java
test_class.identifier: ProtonAffinityHOSEDescriptorTest
test_class.superclass: extends AtomicDescriptorTest
test_case.body: @Test
      public void testProtonAffinityHOSEDescriptor() throws Exception {
          IAtomicDescriptor descriptor = new ProtonAffinityHOSEDescriptor();
          Assert.assertNotNull(descriptor);
      }
test_case.class_method_signature: ProtonAffinityHOSEDescriptorTest.testProtonAffinityHOSEDescriptor()
test_case.full_signature: @Test public void testProtonAffinityHOSEDescriptor()
test_case.identifier: testProtonAffinityHOSEDescriptor
test_case.invocations: assertNotNull
test_case.modifiers: @Test public
test_case.parameters: ()
test_case.return: void
test_case.signature: void testProtonAffinityHOSEDescriptor()
focal_class.declarator: NAMES = {"protonAffiHOSE"}
focal_class.modifier: private static final
focal_class.original_string: private static final String[] NAMES = {"protonAffiHOSE"};
focal_class.type: String[]
focal_class.var_name: NAMES
focal_class.declarator: maxSpheresToUse = 10
focal_class.original_string: int                           maxSpheresToUse = 10;
focal_class.type: int
focal_class.var_name: maxSpheresToUse
focal_class.declarator: db              = new Affinitydb()
focal_class.modifier: private
focal_class.original_string: private Affinitydb            db              = new Affinitydb();
focal_class.type: Affinitydb
focal_class.var_name: db
focal_class.file: descriptor/qsaratomic/src/main/java/org/openscience/cdk/qsar/descriptors/atomic/ProtonAffinityHOSEDescriptor.java
focal_class.identifier: ProtonAffinityHOSEDescriptor
focal_class.class_method_signature: ProtonAffinityHOSEDescriptor.ProtonAffinityHOSEDescriptor()
focal_class.full_signature: public  ProtonAffinityHOSEDescriptor()
focal_class.identifier: ProtonAffinityHOSEDescriptor
focal_class.modifiers: public
focal_class.parameters: ()
focal_class.signature:  ProtonAffinityHOSEDescriptor()
focal_class.class_method_signature: ProtonAffinityHOSEDescriptor.getSpecification()
focal_class.full_signature: @Override public DescriptorSpecification getSpecification()
focal_class.identifier: getSpecification
focal_class.modifiers: @Override public
focal_class.parameters: ()
focal_class.return: DescriptorSpecification
focal_class.signature: DescriptorSpecification getSpecification()
focal_class.class_method_signature: ProtonAffinityHOSEDescriptor.setParameters(Object[] params)
focal_class.full_signature: @Override public void setParameters(Object[] params)
focal_class.identifier: setParameters
focal_class.modifiers: @Override public
focal_class.parameters: (Object[] params)
focal_class.return: void
focal_class.signature: void setParameters(Object[] params)
focal_class.class_method_signature: ProtonAffinityHOSEDescriptor.getParameters()
focal_class.full_signature: @Override public Object[] getParameters()
focal_class.identifier: getParameters
focal_class.modifiers: @Override public
focal_class.parameters: ()
focal_class.return: Object[]
focal_class.signature: Object[] getParameters()
focal_class.class_method_signature: ProtonAffinityHOSEDescriptor.getDescriptorNames()
focal_class.full_signature: @Override public String[] getDescriptorNames()
focal_class.identifier: getDescriptorNames
focal_class.modifiers: @Override public
focal_class.parameters: ()
focal_class.return: String[]
focal_class.signature: String[] getDescriptorNames()
focal_class.class_method_signature: ProtonAffinityHOSEDescriptor.calculate(IAtom atom, IAtomContainer container)
focal_class.full_signature: @Override public DescriptorValue calculate(IAtom atom, IAtomContainer container)
focal_class.identifier: calculate
focal_class.modifiers: @Override public
focal_class.parameters: (IAtom atom, IAtomContainer container)
focal_class.return: DescriptorValue
focal_class.signature: DescriptorValue calculate(IAtom atom, IAtomContainer container)
focal_class.class_method_signature: ProtonAffinityHOSEDescriptor.familyHalogen(IAtom atom)
focal_class.full_signature: private boolean familyHalogen(IAtom atom)
focal_class.identifier: familyHalogen
focal_class.modifiers: private
focal_class.parameters: (IAtom atom)
focal_class.return: boolean
focal_class.signature: boolean familyHalogen(IAtom atom)
focal_class.class_method_signature: ProtonAffinityHOSEDescriptor.getParameterNames()
focal_class.full_signature: @Override public String[] getParameterNames()
focal_class.identifier: getParameterNames
focal_class.modifiers: @Override public
focal_class.parameters: ()
focal_class.return: String[]
focal_class.signature: String[] getParameterNames()
focal_class.class_method_signature: ProtonAffinityHOSEDescriptor.getParameterType(String name)
focal_class.full_signature: @Override public Object getParameterType(String name)
focal_class.identifier: getParameterType
focal_class.modifiers: @Override public
focal_class.parameters: (String name)
focal_class.return: Object
focal_class.signature: Object getParameterType(String name)
focal_class.class_method_signature: ProtonAffinityHOSEDescriptor.extractInfo(String str)
focal_class.full_signature: private static List<String> extractInfo(String str)
focal_class.identifier: extractInfo
focal_class.modifiers: private static
focal_class.parameters: (String str)
focal_class.return: List<String>
focal_class.signature: List<String> extractInfo(String str)
focal_class.superclass: extends AbstractAtomicDescriptor
focal_method.body: public ProtonAffinityHOSEDescriptor() {}
focal_method.class_method_signature: ProtonAffinityHOSEDescriptor.ProtonAffinityHOSEDescriptor()
focal_method.full_signature: public  ProtonAffinityHOSEDescriptor()
focal_method.identifier: ProtonAffinityHOSEDescriptor
focal_method.modifiers: public
focal_method.parameters: ()
focal_method.signature:  ProtonAffinityHOSEDescriptor()