Yingru Li, Ting Du, Lin Huff-Corzine, Kenisha Johnson, Boniface Noyongoyo
Where is the fruit? Multidimensional inequalities in food retail environments around public elementary schools
Child: care, health and development
variant calling workflows utilize single reference sequence de facto standard elementary genomic analysis routine resequencing projects various ways enhance reference pangenomic information proposed scalability combined seamless integration existing workflows remains challenge present panvc founder sequences scalable accurate variant calling workflow based multiple alignment reference sequences scalability achieved removing duplicate parts limit founder multiple alignment indexed using hybrid scheme exploits general purpose read aligners implemented workflow uses gatk bcftools variant calling various steps workflow eg vcf2multialign tool founder reconstruction independent interest basis creating novel pangenome analysis workflows beyond variant calling open access tools instructions reproduce experiments available following address httpsgithubcomalgbiopanvcfounders supplementary data available bioinformatics online