Analyzing Brain Tumor Connectomics using Graphs and Persistent Homology
<|reference_start|>Analyzing Brain Tumor Connectomics using Graphs and Persistent Homology: Recent advances in molecular and genetic research have identified a diverse range of brain tumor sub-types, shedding light on differences in their molecular mechanisms, heterogeneity, and origins. The present study performs whole-brain connectome analysis using diffusionweighted images. To achieve this, both graph theory and persistent homology - a prominent approach in topological data analysis are employed in order to quantify changes in the structural connectivity of the wholebrain connectome in subjects with brain tumors. Probabilistic tractography is used to map the number of streamlines connecting 84 distinct brain regions, as delineated by the Desikan-Killiany atlas from FreeSurfer. These streamline mappings form the connectome matrix, on which persistent homology based analysis and graph theoretical analysis are executed to evaluate the discriminatory power between tumor sub-types that include meningioma and glioma. A detailed statistical analysis is conducted on persistent homology-derived topological features and graphical features to identify the brain regions where differences between study groups are statistically significant (p < 0.05). For classification purpose, graph-based local features are utilized, achieving a highest accuracy of 88%. In classifying tumor sub-types, an accuracy of 80% is attained. The findings obtained from this study underscore the potential of persistent homology and graph theoretical analysis of the whole-brain connectome in detecting alterations in structural connectivity patterns specific to different types of brain tumors.<|reference_end|>
@article{bhattacharya2024analyzing,
    title={Analyzing Brain Tumor Connectomics using Graphs and Persistent Homology},
    author={Debanjali Bhattacharya, Ninad Aithal, Manish Jayswal and Neelam Sinha},
    journal={arXiv preprint arXiv:2407.17938},
    year={2024},
    archivePrefix={arXiv},
    eprint={2407.17938},
    primaryClass={q-bio.NC cs.CV math.AT}
}