A: The variant NC_000022.11:g.42061040G>A in gene NAGA is classified as 'Likely_pathogenic' for Alpha-N-acetylgalactosaminidase_deficiency_type_2|Alpha-N-acetylgalactosaminidase_deficiency. Molecular consequence: SO:0001583: missense_variant. Variant type: single_nucleotide_variant. Disease database links: MONDO:MONDO:0012222,MedGen:C1836522,OMIM:609242,Orphanet:3137,Orphanet:79280|MONDO:MONDO:0017779,MedGen:C5848084,Orphanet:3137. Review status: criteria provided, single submitter.