A: The variant NC_000022.11:g.42058499_42058500del in gene NAGA is classified as 'Benign' for Alpha-N-acetylgalactosaminidase_deficiency_type_2|Alpha-N-acetylgalactosaminidase_deficiency_type_1. Molecular consequence: SO:0001624: 3_prime_UTR_variant. Variant type: Deletion. Disease database links: MONDO:MONDO:0012222,MedGen:C1836522,OMIM:609242,Orphanet:3137,Orphanet:79280|MONDO:MONDO:0012221,MedGen:C1836544,OMIM:609241,Orphanet:3137,Orphanet:79279,Orphanet:79281. Review status: criteria provided, single submitter.