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1Hr Per-breath Data/Case_1.csv ADDED
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1
+ Case ID,Breath Number,Dynamic Compliance (mL/cmH₂O),Mean Airway Pressure (cmH₂O),Peak Airway Pressure (cmH₂O),Expiratory Volume (mL)
2
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1Hr Per-breath Data/Case_2.csv ADDED
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1
+ Case ID,Breath Number,Dynamic Compliance (mL/cmH₂O),Mean Airway Pressure (cmH₂O),Peak Airway Pressure (cmH₂O),Expiratory Volume (mL)
2
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1Hr Per-breath Data/Case_3.csv ADDED
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1
+ Case ID,Breath Number,Dynamic Compliance (mL/cmH₂O),Mean Airway Pressure (cmH₂O),Peak Airway Pressure (cmH₂O),Expiratory Volume (mL)
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+ 3,Breath_1,78.2,8.2,15.3,725
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2Hr Per-breath Data/Case_1.csv ADDED
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1
+ Case ID,Breath Number,Dynamic Compliance (mL/cmH₂O),Mean Airway Pressure (cmH₂O),Peak Airway Pressure (cmH₂O),Expiratory Volume (mL)
2
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2Hr Per-breath Data/Case_2.csv ADDED
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1
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2
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3
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2Hr Per-breath Data/Case_3.csv ADDED
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3Hr Per-breath Data/Case_1.csv ADDED
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1
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2
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3
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11
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13
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17
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33
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35
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50
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51
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3Hr Per-breath Data/Case_2.csv ADDED
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1
+ Case ID,Breath Number,Dynamic Compliance (mL/cmH₂O),Mean Airway Pressure (cmH₂O),Peak Airway Pressure (cmH₂O),Expiratory Volume (mL)
2
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3
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6
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8
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12
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21
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22
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23
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3Hr Per-breath Data/Case_3.csv ADDED
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1
+ Case ID,Breath Number,Dynamic Compliance (mL/cmH₂O),Mean Airway Pressure (cmH₂O),Peak Airway Pressure (cmH₂O),Expiratory Volume (mL)
2
+ 3,Breath_1,100.4,7.6,13.1,723
3
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4
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8
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11
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14
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16
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17
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18
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19
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20
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21
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22
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23
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28
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32
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33
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34
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35
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40
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51
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DT Lung Demo Case 1.xlsx ADDED
Binary file (15.1 kB). View file
 
DT Lung Demo Case 2.xlsx ADDED
Binary file (15.1 kB). View file
 
DT Lung Demo Case 3.xlsx ADDED
Binary file (14.8 kB). View file
 
DT Lung Demo Template.xlsx ADDED
Binary file (13 kB). View file
 
Lung Function Hourly Data/Case_1.csv ADDED
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1
+ Case ID,Parameter,1st Hour,2nd Hour,3rd Hour
2
+ 1,Mean Airway Pressure (cmH₂O),7.7,7.3,7.3
3
+ 1,Plateau Airway Pressure (cmH₂O),11.0,10.3,10.3
4
+ 1,Peak Airway Pressure (cmH₂O),13.7,13.0,13.0
5
+ 1,Pulmonary Arterial Pressure (mmHg),6.0,6.3,6.7
6
+ 1,Left Atrial Pressure (mmHg),3.3,3.7,4.0
7
+ 1,Arterial Partial Pressure O₂ (mmHg),511.3,513.3,512.0
8
+ 1,Venous Partial Pressure O₂ (mmHg),89.0,96.3,100.7
9
+ 1,Arterial Partial Pressure CO₂ (mmHg),21.3,19.7,19.7
10
+ 1,Venous Partial Pressure CO₂ (mmHg),26.7,24.7,24.3
11
+ 1,Static Compliance (mL/cmH₂O),137.0,141.7,141.3
12
+ 1,Dynamic Compliance (mL/cmH₂O),89.3,94.0,96.7
13
+ 1,Sodium (mmol/L),149.3,151.0,152.7
14
+ 1,Calcium (mmol/L),0.75,0.77,0.78
15
+ 1,Chloride (mmol/L),120.3,122.3,123.0
16
+ 1,Potassium (mmol/L),3.2,3.4,3.5
17
+ 1,Bicarbonate (mmol/L),8.1,7.2,6.9
18
+ 1,Base Excess (mmol/L),-20.3,-21.3,-22.6
19
+ 1,pH,7.18,7.17,7.13
20
+ 1,Lactate (mmol/L),2.7,4.4,5.6
21
+ 1,Glucose (mmol/L),8.1,7.4,6.8
22
+ 1,Edema (mL),208.0,67.0,50.0
Lung Function Hourly Data/Case_2.csv ADDED
@@ -0,0 +1,22 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ Case ID,Parameter,1st Hour,2nd Hour,3rd Hour
2
+ 2,Mean Airway Pressure (cmH₂O),8.0,8.0,8.3
3
+ 2,Plateau Airway Pressure (cmH₂O),12.3,13.0,12.7
4
+ 2,Peak Airway Pressure (cmH₂O),15.3,17.3,16.7
5
+ 2,Pulmonary Arterial Pressure (mmHg),8.3,8.3,8.0
6
+ 2,Left Atrial Pressure (mmHg),4.7,5.0,4.7
7
+ 2,Arterial Partial Pressure O₂ (mmHg),456.8,476.6,476.4
8
+ 2,Venous Partial Pressure O₂ (mmHg),85.4,86.3,87.0
9
+ 2,Arterial Partial Pressure CO₂ (mmHg),20.6,19.9,19.6
10
+ 2,Venous Partial Pressure CO₂ (mmHg),26.1,25.2,25.8
11
+ 2,Static Compliance (mL/cmH₂O),92.3,92.3,94.0
12
+ 2,Dynamic Compliance (mL/cmH₂O),60.3,60.0,58.3
13
+ 2,Sodium (mmol/L),149.7,150.5,151.9
14
+ 2,Calcium (mmol/L),0.8,0.85,0.91
15
+ 2,Chloride (mmol/L),124.7,125.7,127.3
16
+ 2,Potassium (mmol/L),4.6,4.6,4.8
17
+ 2,Bicarbonate (mmol/L),6.3,5.0,3.7
18
+ 2,Base Excess (mmol/L),-23.2,-26.0,-29.8
19
+ 2,pH,7.11,7.01,6.86
20
+ 2,Lactate (mmol/L),4.3,6.8,9.3
21
+ 2,Glucose (mmol/L),8.0,7.2,5.5
22
+ 2,Edema (mL),397.0,143.0,137.0
Lung Function Hourly Data/Case_3.csv ADDED
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1
+ Case ID,Parameter,1st Hour,2nd Hour,3rd Hour
2
+ 3,Mean Airway Pressure (cmH₂O),9.0,8.3,8.0
3
+ 3,Plateau Airway Pressure (cmH₂O),12.0,11.3,11.0
4
+ 3,Peak Airway Pressure (cmH₂O),16.3,15.0,14.0
5
+ 3,Pulmonary Arterial Pressure (mmHg),7.0,7.3,8.0
6
+ 3,Left Atrial Pressure (mmHg),4.7,5.0,4.7
7
+ 3,Arterial Partial Pressure O₂ (mmHg),401.3,442.3,479.9
8
+ 3,Venous Partial Pressure O₂ (mmHg),87.4,88.1,85.0
9
+ 3,Arterial Partial Pressure CO₂ (mmHg),23.2,20.9,19.8
10
+ 3,Venous Partial Pressure CO₂ (mmHg),27.0,24.9,25.0
11
+ 3,Static Compliance (mL/cmH₂O),136.3,148.7,158.0
12
+ 3,Dynamic Compliance (mL/cmH₂O),73.3,81.7,90.0
13
+ 3,Sodium (mmol/L),147.0,148.8,150.7
14
+ 3,Calcium (mmol/L),0.84,0.87,0.9
15
+ 3,Chloride (mmol/L),124.7,125.0,126.0
16
+ 3,Potassium (mmol/L),4.8,4.8,4.8
17
+ 3,Bicarbonate (mmol/L),7.0,5.2,3.8
18
+ 3,Base Excess (mmol/L),-22.8,-25.8,-29.3
19
+ 3,pH,7.09,7.01,6.89
20
+ 3,Lactate (mmol/L),5.1,7.5,9.6
21
+ 3,Glucose (mmol/L),7.4,6.1,4.6
22
+ 3,Edema (mL),225.0,50.0,57.0
README.md ADDED
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1
+ ---
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+ license: cc-by-nc-nd-4.0
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+ dtype: string
66
+ - name: 1st Hour
67
+ dtype: float64
68
+ - name: 2nd Hour
69
+ dtype: float64
70
+ - name: 3rd Hour
71
+ dtype: float64
72
+ splits:
73
+ - name: train
74
+ num_bytes: 3801
75
+ num_examples: 63
76
+ - config_name: Lung X-ray Image Data
77
+ features:
78
+ - name: Case ID
79
+ dtype: int64
80
+ - name: Xray PC#
81
+ dtype: string
82
+ - name: 1st Hour
83
+ dtype: float64
84
+ - name: 3rd Hour
85
+ dtype: float64
86
+ splits:
87
+ - name: train
88
+ num_bytes: 1233
89
+ num_examples: 30
90
+ - config_name: Protein Data
91
+ features:
92
+ - name: Case ID
93
+ dtype: int64
94
+ - name: Protein
95
+ dtype: string
96
+ - name: 1st Hour
97
+ dtype: float64
98
+ - name: 90 Minutes
99
+ dtype: float64
100
+ - name: 110 Minutes
101
+ dtype: float64
102
+ - name: 2nd Hour
103
+ dtype: float64
104
+ - name: 130 Minutes
105
+ dtype: float64
106
+ - name: 150 Minutes
107
+ dtype: float64
108
+ - name: 3rd Hour
109
+ dtype: float64
110
+ splits:
111
+ - name: train
112
+ num_bytes: 1077
113
+ num_examples: 12
114
+ - config_name: Transcriptomics Data
115
+ features:
116
+ - name: Case ID
117
+ dtype: int64
118
+ - name: Pathway
119
+ dtype: string
120
+ - name: Baseline
121
+ dtype: float64
122
+ - name: Target
123
+ dtype: float64
124
+ splits:
125
+ - name: train
126
+ num_bytes: 8454
127
+ num_examples: 156
128
+ configs:
129
+ - config_name: 1Hr Per-breath Data
130
+ data_files:
131
+ - split: train
132
+ path: 1Hr Per-breath Data/*.csv
133
+ - config_name: 2Hr Per-breath Data
134
+ data_files:
135
+ - split: train
136
+ path: 2Hr Per-breath Data/*.csv
137
+ - config_name: 3Hr Per-breath Data
138
+ data_files:
139
+ - split: train
140
+ path: 3Hr Per-breath Data/*.csv
141
+ - config_name: Lung Function Hourly Data
142
+ data_files:
143
+ - split: train
144
+ path: Lung Function Hourly Data/*.csv
145
+ - config_name: Lung X-ray Image Data
146
+ data_files:
147
+ - split: train
148
+ path: Lung X-ray Image Data/*.csv
149
+ - config_name: Protein Data
150
+ data_files:
151
+ - split: train
152
+ path: Protein Data/*.csv
153
+ - config_name: Transcriptomics Data
154
+ data_files:
155
+ - split: train
156
+ path: Transcriptomics Data/*.csv
157
+ ---
158
+
159
+ <h1 align="center">
160
+ <span style="font-size:32px">
161
+ Digital Twins of Ex Vivo Human Lungs Demo Dataset
162
+ </span>
163
+ </h1>
164
+
165
+ <p align="center">
166
+ <a href="https://your-project-page-url">
167
+ <img alt="Project Page"
168
+ src="https://img.shields.io/badge/Project-Page-blue" />
169
+ </a>
170
+ <a href="https://github.com/Sage-Lab-ai/DT_Lung">
171
+ <img alt="GitHub Code"
172
+ src="https://img.shields.io/badge/GitHub-Code-black?logo=github" />
173
+ </a>
174
+ <a href="https://colab.research.google.com/drive/1IrzccQ09mP5amxQTZy07n4LgLSC2r1uj?usp=sharing">
175
+ <img alt="Colab: DT Lung Demo"
176
+ src="https://img.shields.io/badge/Colab-DT%20Lung%20Demo-orange?logo=google-colab" />
177
+ </a>
178
+ <a href="https://dt-lung.streamlit.app/">
179
+ <img alt="Streamlit Web App"
180
+ src="https://img.shields.io/badge/Streamlit-Web%20App-red?logo=streamlit" />
181
+ </a>
182
+ <a href="https://huggingface.co/SageLabUHN/DT_Lung">
183
+ <img alt="Hugging Face Model"
184
+ src="https://img.shields.io/badge/HuggingFace-Model-yellow?logo=huggingface" />
185
+ </a>
186
+ <a href="https://huggingface.co/datasets/SageLabUHN/DT_Lung_Demo_Data">
187
+ <img alt="Hugging Face Dataset"
188
+ src="https://img.shields.io/badge/HuggingFace-Dataset-yellow?logo=huggingface" />
189
+ </a>
190
+ </p>
191
+
192
+
193
+ **Model Repository:** [Published Models](https://huggingface.co/SageLabUHN/DT_Lung)
194
+ **Project Repository:** [Digital Twin of Ex Vivo Human Lungs Project](https://github.com/Sage-Lab-ai/DT_Lung)<br>
195
+ **Updated:** 2025-July
196
+
197
+ ---
198
+
199
+ ## Dataset Summary
200
+
201
+ This demo dataset accompanies the [Digital Twin of Ex Vivo Human Lungs Project](https://github.com/Sage-Lab-ai/DT_Lung). It provides demo data to test and demonstrate inference workflows with our [published models](https://huggingface.co/SageLabUHN/DT_Lung).
202
+
203
+ The dataset includes:
204
+ - Demo data on three clinical ex vivo human lung cases
205
+ - Multi-modal data including lung physiology, biochemistry, X-ray image-derived features, protein markers, transcriptomic markers, and per-breath time-series data.
206
+
207
+ ---
208
+
209
+ ## Dataset Structure
210
+
211
+ ```
212
+ DT_Lung_Demo_Data/
213
+ ├── DT Lung Demo Case 1.xlsx
214
+ ├── DT Lung Demo Case 2.xlsx
215
+ ├── DT Lung Demo Case 3.xlsx
216
+ ```
217
+
218
+ Each Excel file in this directory represents an independent clinical ex vivo human lung case. Each tab in the Excel file contains data for each data modality.
219
+
220
+ ## Downloading Dataset
221
+
222
+ Option 1: Recommended
223
+
224
+ ```
225
+ from huggingface_hub import snapshot_download
226
+
227
+ dataset_dir = snapshot_download(
228
+ repo_id="SageLabUHN/DT_Lung_Demo_Data",
229
+ repo_type="dataset",
230
+ local_dir="DT_Lung/Data"
231
+ )
232
+
233
+ print(f"Dataset downloaded to: {dataset_dir}")
234
+ ```
235
+
236
+ Option 2: Manual download from browser
237
+ 1. Click on the Excel file you want to download, click "Download".
238
+ 2. Place downloaded files under the correct directory: "work_dir/DT_Lung/Data"
239
+
240
+ ## Intended Use
241
+
242
+ This dataset is intended for:
243
+ - Testing inference pipelines in research and demos
244
+ - Demonstrating data structure for digital twin modeling
245
+ - Reproducing examples from our [Google Colab Demo](https://colab.research.google.com/drive/1EsiyQ0c0HK2p3X3w2nd8E0J7ag9dyV9T?authuser=1#scrollTo=-qFeBnInM4a0) and [Web App Demo](https://dt-lung.streamlit.app/)
246
+
247
+ **Not intended** for model training or clinical decision-making.
248
+
249
+ ## License
250
+
251
+ This dataset is released under the **Creative Commons Attribution‑NonCommercial‑ShareAlike 4.0 International (CC BY‑NC‑SA 4.0)** license.
252
+ Commercial use is **prohibited**.
253
+