I'm not sure I understand completely but you may want to try saving the file as .pyw vs .py before making it an executable. you may be seeing the console running.
The Tkinter app works good after deployment with Pyinstaller,
but it opens 2 windows: .exe and app (tkinter container).
Any ideas? how to fix it?
Pyinstaller: It works, but .exe window and App Window is separated. Any ideas?