A method and system for segmenting multiple brain structures in 3D magnetic resonance (MR) images is disclosed. After intensity standardization of a 3D MR image, a meta-structure including center positions of multiple brain structures is detected in the 3D MR image. The brain structures are then individually segmented using marginal space learning (MSL) constrained by the detected meta-structure.
Method and system for segmentation of brain structures in 3D magnetic resonance images