Bug 66094 IAE / Some copy operations don't pick up all of the collapsed regions
New feature to collapse regions of Java source - very nice. The way I copy between files is to position the cursor to the start of the file, use Ctrl+Shift+End to select all of the text between cursor and EOF, or sometimes Shift+Arrow keys to highlight a selected region. After this use Ctrl+C to copy into the clipboard. The collapsed regions are not included. Using Edit>Select All to select the file's contents does work, but holding down the shift key and using the keyboard arrows or Ctrl+End to traverse the selection cursor over collapsed regions doesn't pick up the collapsed bits.
org.eclipse.jdt.ui/ui/org/eclipse/jdt/internal/ui/javaeditor/JavaEditor.java
}
	protected void uninstallOverrideIndicator() {
		if (fOverrideIndicatorManager != null) {
			fOverrideIndicatorManager.removeAnnotations();
			fOverrideIndicatorManager= null;
		}
	}
	protected void installOverrideIndicator(boolean provideAST) {
		uninstallOverrideIndicator();
		IAnnotationModel model= getDocumentProvider().getAnnotationModel(getEditorInput());
		final IJavaElement inputElement= getInputJavaElement();
		if (model == null || inputElement == null)
			return;
		fOverrideIndicatorManager= new OverrideIndicatorManager(model, inputElement, null);
		
		if (provideAST) {
			Job job= new Job("Override indicator installation job") {
				/*
				 * @see org.eclipse.core.runtime.jobs.Job#run(org.eclipse.core.runtime.IProgressMonitor)
				 * @since 3.0
				 */
				protected IStatus run(IProgressMonitor monitor) {
					CompilationUnit ast= JavaPlugin.getDefault().getASTProvider().getAST(inputElement, true, null);
					if (fOverrideIndicatorManager != null) 
						fOverrideIndicatorManager.reconciled(ast, true, monitor);
					return Status.OK_STATUS;
				}
			};
			job.setPriority(Job.DECORATE);
			job.setSystem(true);