Bug 18067 Packages View filters not applied when eclipse restarted
Eclipse F1 1) Create a java project with a .classpath file 2) In the packages view open the filter dialog and uncheck "Hide .* files". 3) Notice that the .classpath file is visible 4) Exit eclipse 5) Launch eclipse again. 6) Notice that the .classpath file is not visible in the packages view 7) Open the filter dialog for the Packages view. Notice that "Hide .* files" is still unchecked.
org.eclipse.jdt.ui/ui/org/eclipse/jdt/internal/ui/packageview/PackageExplorerPart.java
public static void initDefaults(IPreferenceStore store) {
		store.setDefault(TAG_SHOWLIBRARIES, true);
		store.setDefault(TAG_SHOWBINARIES, true);
	}
	/**
	 * Returns the package explorer part of the active perspective. If 
	 * there isn't any package explorer part <code>null</code> is returned.
	 */
	public static PackageExplorerPart getFromActivePerspective() {
		IViewPart view= JavaPlugin.getActivePage().findView(VIEW_ID);
		if (view instanceof PackageExplorerPart)
			return (PackageExplorerPart)view;
		return null;	
	}
	
	/**
	 * Makes the package explorer part visible in the active perspective. If there
	 * isn't a package explorer part registered <code>null</code> is returned.
	 * Otherwise the opened view part is returned.
	 */
	public static PackageExplorerPart openInActivePerspective() {
		try {
			return (PackageExplorerPart)JavaPlugin.getActivePage().showView(VIEW_ID);
		} catch(PartInitException pe) {
			return null;
		}
	} 
		
	 public void dispose() {
		if (fContextMenu != null && !fContextMenu.isDisposed())