Bug 98327 [misc] File not saved on disk after "resave" editor context
N20060604-0010 - create project, package, A.java - open A.java in editor - go to OS explorer - delete A.java on disk - go back to workbench and activate editor observe: you get a dialog asking you whether you want to save the content - say yes observe: the dialog claims that the file exists. Strange, since I just deleted it. Say yes for override observe: the file doesn't end up on disk. You get an editor that the file doesn't exist.
org.eclipse.jdt.ui/ui/org/eclipse/jdt/internal/ui/javaeditor/CompilationUnitDocumentProvider.java
}
					removeMarkerOverlays(isCanceled);
					fPreviouslyOverlaid= null;
				}
				if (temporaryProblemsChanged)
					fireModelChanged();
			}
			private void removeMarkerOverlays(boolean isCanceled) {
				if (isCanceled) {
					fCurrentlyOverlaid.addAll(fPreviouslyOverlaid);
				} else if (fPreviouslyOverlaid != null) {
					Iterator e= fPreviouslyOverlaid.iterator();
					while (e.hasNext()) {
						JavaMarkerAnnotation annotation= (JavaMarkerAnnotation) e.next();
						annotation.setOverlay(null);
					}
				}
			}
			/**
			 * Overlays value with problem annotation.
			 * @param problemAnnotation
			 */
			private void setOverlay(Object value, ProblemAnnotation problemAnnotation) {
				if (value instanceof  JavaMarkerAnnotation) {
					JavaMarkerAnnotation annotation= (JavaMarkerAnnotation) value;
					if (annotation.isProblem()) {
						annotation.setOverlay(problemAnnotation);
						fPreviouslyOverlaid.remove(annotation);
						fCurrentlyOverlaid.add(annotation);
					}