Bug 68011 [java search] "Search the JRE System Libraries" looks like a local preference but behaves as a global one... [search]
org.eclipse.jdt.ui/ui/org/eclipse/jdt/internal/ui/search/JavaSearchScopeFactory.java
import java.util.HashSet;
import java.util.Set;
import org.eclipse.core.runtime.CoreException;
import org.eclipse.core.runtime.IAdaptable;
import org.eclipse.core.runtime.IPath;
import org.eclipse.core.resources.IFolder;
import org.eclipse.core.resources.IProject;
import org.eclipse.core.resources.IResource;
import org.eclipse.core.resources.IWorkspaceRoot;
import org.eclipse.core.resources.ResourcesPlugin;
import org.eclipse.swt.widgets.Shell;
import org.eclipse.jface.viewers.ISelection;
import org.eclipse.jface.viewers.IStructuredSelection;
import org.eclipse.jface.window.Window;
import org.eclipse.ui.IEditorInput;
import org.eclipse.ui.IWorkingSet;
import org.eclipse.ui.PlatformUI;
import org.eclipse.ui.dialogs.IWorkingSetSelectionDialog;
import org.eclipse.jdt.core.IJavaElement;
import org.eclipse.jdt.core.IJavaProject;
import org.eclipse.jdt.core.IPackageFragment;
import org.eclipse.jdt.core.JavaCore;
import org.eclipse.jdt.core.JavaModelException;
import org.eclipse.jdt.core.search.IJavaSearchScope;
import org.eclipse.jdt.core.search.SearchEngine;
import org.eclipse.jdt.internal.corext.util.Messages;
import org.eclipse.jdt.ui.JavaUI;
import org.eclipse.jdt.internal.ui.JavaPlugin;
import org.eclipse.jdt.internal.ui.browsing.LogicalPackage;
public class JavaSearchScopeFactory {