Bug 45062 Don't filter output folder and class files
Create a Java project with source folder src and output folder bin. The bin folder will not be shown in the Packages Explorer. Create a Java project with source folder src and output folder output/bin. The output and bin folders are shown in the Packages Explorer. Implictly filtering out bin is confusing and inconsistent. A better way to do this would be to use a name filter for bin or add "Output folder" to the list of available filters.
org.eclipse.jdt.ui/ui/org/eclipse/jdt/internal/ui/packageview/PackageExplorerPart.java
* 
	 * @since 2.1
	 */
	boolean isFlatLayout() {
		return fIsCurrentLayoutFlat;
	}
	
	private void setProviders() {
		
		fContentProvider= createContentProvider();
		fContentProvider.setIsFlatLayout(fIsCurrentLayoutFlat);
		fViewer.setContentProvider(fContentProvider);
	
		fLabelProvider= createLabelProvider();
		fLabelProvider.setIsFlatLayout(fIsCurrentLayoutFlat);
		fViewer.setLabelProvider(new DecoratingJavaLabelProvider(fLabelProvider, false, false));
		
	}
	
	void toggleLayout() {
		
		fIsCurrentLayoutFlat= !fIsCurrentLayoutFlat;
		saveLayoutState(null);
		
		fContentProvider.setIsFlatLayout(isFlatLayout());
		fLabelProvider.setIsFlatLayout(isFlatLayout());
		
		fViewer.getControl().setRedraw(false);
		fViewer.refresh();
		fViewer.getControl().setRedraw(true);