Bug 66094 IAE / Some copy operations don't pick up all of the collapsed regions
New feature to collapse regions of Java source - very nice. The way I copy between files is to position the cursor to the start of the file, use Ctrl+Shift+End to select all of the text between cursor and EOF, or sometimes Shift+Arrow keys to highlight a selected region. After this use Ctrl+C to copy into the clipboard. The collapsed regions are not included. Using Edit>Select All to select the file's contents does work, but holding down the shift key and using the keyboard arrows or Ctrl+End to traverse the selection cursor over collapsed regions doesn't pick up the collapsed bits.
org.eclipse.jdt.ui/ui/org/eclipse/jdt/internal/ui/javaeditor/JavaEditor.java
if (fMarkExceptionOccurrences || fMarkTypeOccurrences) {
			ExceptionOccurrencesFinder exceptionFinder= new ExceptionOccurrencesFinder();
			message= exceptionFinder.initialize(astRoot, selection.getOffset(), selection.getLength());
			if (message == null) {
				matches= exceptionFinder.perform();
			}
		}
		if (matches.size() == 0) {
			if (fMarkMethodExitPoints || fMarkTypeOccurrences) {
				MethodExitsFinder finder= new MethodExitsFinder();
				message= finder.initialize(astRoot, selection.getOffset(), selection.getLength());
				if (message == null) {
					matches= finder.perform();
				}
			}
			if (matches.size() == 0) {
				ASTNode node= NodeFinder.perform(astRoot, selection.getOffset(), selection.getLength());
				if (!(node instanceof Name)) {
					if (!fStickyOccurrenceAnnotations)
						removeOccurrenceAnnotations();
					return;
				}
				
				IBinding binding= ((Name)node).resolveBinding();
				if (binding == null && fStickyOccurrenceAnnotations)
					return;
				
				if (!markOccurrencesOfType(binding)) {
					if (!fStickyOccurrenceAnnotations)
						removeOccurrenceAnnotations();