Simple Question (Direct)
Simple Question
Q24101495
P702
Q863908
USER
Which nucleic acid sequence encodes nitric oxide reduction protein NorE    NGR_c09840 ?
(Q24101495,P702,c(Q863908))
action filter_type
action find
entity Q24101495
relation P702
type Q863908
['Q24101495', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?n WHERE { ?n rdf:type ontology:Q863908 . resource:Q24101495 property:P702 ?n }
nitric oxide reduction protein NorE    NGR_c09840
action filter_type
action find
entity nitric oxide reduction protein NorE    NGR_c09840
relation encoded by
type nucleic acid sequence
['nitric oxide reduction protein NorE    NGR_c09840', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?n WHERE { ?n rdf:type ontology:nucleic_acid_sequence . resource:nitric_oxide_reduction_protein_NorE____NGR_c09840 property:encoded_by ?n }
[]
nucleic acid sequence
Q23313798
SYSTEM
nitric oxide reduction protein NorE    NGR_c09840
Q23313798
(Q24101495,P702,c(Q863908))
action filter_type
action find
entity Q24101495
relation P702
type Q863908
Nitric oxide reduction protein NorE NGR c09840 encodes nitric oxide reduction protein NorE NGR_c09840
['Q24101495', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?n WHERE { ?n rdf:type ontology:Q863908 . resource:Q24101495 property:P702 ?n }
nitric oxide reduction protein NorE    NGR_c09840
Nitric oxide reduction protein NorE NGR c09840 encodes nitric oxide reduction protein NorE NGR_c09840
nitric oxide reduction protein NorE    NGR_c09840
action filter_type
action find
entity nitric oxide reduction protein NorE    NGR_c09840
relation encoded by
type nucleic acid sequence
['nitric oxide reduction protein NorE    NGR_c09840', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?n WHERE { ?n rdf:type ontology:nucleic_acid_sequence . resource:nitric_oxide_reduction_protein_NorE____NGR_c09840 property:encoded_by ?n }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q24101495
P703
Q631147
USER
Which infraspecific name is nitric oxide reduction protein NorE    NGR_c09840 found in ?
(Q24101495,P703,c(Q631147))
action filter_type
action find
entity Q24101495
relation P703
type Q631147
['Q24101495', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?d WHERE { ?d rdf:type ontology:Q631147 . resource:Q24101495 property:P703 ?d }
nitric oxide reduction protein NorE    NGR_c09840
action filter_type
action find
entity nitric oxide reduction protein NorE    NGR_c09840
relation found in taxon
type infraspecific name
['nitric oxide reduction protein NorE    NGR_c09840', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?d WHERE { ?d rdf:type ontology:infraspecific_name . resource:nitric_oxide_reduction_protein_NorE____NGR_c09840 property:found_in_taxon ?d }
[]
infraspecific name
Q23309229
SYSTEM
Sinorhizobium fredii NGR234
Q23309229
(Q24101495,P703,c(Q631147))
action filter_type
action find
entity Q24101495
relation P703
type Q631147
[ANSWER] is nitric oxide reduction protein NorE NGR_c09840 found in
['Q24101495', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?d WHERE { ?d rdf:type ontology:Q631147 . resource:Q24101495 property:P703 ?d }
Sinorhizobium fredii NGR234
Sinorhizobium fredii NGR234 is nitric oxide reduction protein NorE NGR_c09840 found in
Sinorhizobium fredii NGR234
action filter_type
action find
entity nitric oxide reduction protein NorE    NGR_c09840
relation found in taxon
type infraspecific name
['nitric oxide reduction protein NorE    NGR_c09840', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?d WHERE { ?d rdf:type ontology:infraspecific_name . resource:nitric_oxide_reduction_protein_NorE____NGR_c09840 property:found_in_taxon ?d }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q24101495
P682
Q1057
USER
Which metabolic process is that nutrient involved in ?
(Q23309229,P682,c(Q1057))
action filter_type
action find
entity Q24101495
relation P682
type Q1057
['Q23309229', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?h WHERE { resource:Q24101495 property:P682 ?h . ?h rdf:type ontology:Q1057 }
nitric oxide reduction protein NorE    NGR_c09840
action filter_type
action find
entity nitric oxide reduction protein NorE    NGR_c09840
relation biological process
type metabolic process
['Sinorhizobium fredii NGR234', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?h WHERE { resource:nitric_oxide_reduction_protein_NorE____NGR_c09840 property:biological_process ?h . ?h rdf:type ontology:metabolic_process }
[]
metabolic process
Q14349764
SYSTEM
oxidation-reduction process
Q14349764
(Q23309229,P682,c(Q1057))
action filter_type
action find
entity Q24101495
relation P682
type Q1057
That nutrient is an [ANSWER]
['Q23309229', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?h WHERE { resource:Q24101495 property:P682 ?h . ?h rdf:type ontology:Q1057 }
oxidation-reduction process
That nutrient is an oxidation-reduction process
oxidation-reduction process
action filter_type
action find
entity nitric oxide reduction protein NorE    NGR_c09840
relation biological process
type metabolic process
['Sinorhizobium fredii NGR234', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?h WHERE { resource:nitric_oxide_reduction_protein_NorE____NGR_c09840 property:biological_process ?h . ?h rdf:type ontology:metabolic_process }
[]
Logical Reasoning (All)
Logical|Intersection|Single_Relation|Incomplete
Q27748072 Q24101495
P682
Q1057
USER
And also 6-phosphogluconate dehydrogenase    MSMEG_0002
AND((Q24101495,P682,c(Q1057)), (Q27748072,P682,c(Q1057)))
action filter_type
action intersection
action find
entity Q24101495
relation P682
action find
entity Q27748072
relation P682
type Q1057
{'AND': [['Q24101495', 'P682', {'concept': 'Q1057'}], ['Q27748072', 'P682', {'concept': 'Q1057'}]]}
SELECT DISTINCT ?g WHERE { ?g rdf:type ontology:Q1057 . resource:Q27748072 property:P682 ?g . resource:Q24101495 property:P682 ?g }
6-phosphogluconate dehydrogenase    MSMEG_0002 nitric oxide reduction protein NorE    NGR_c09840
action filter_type
action intersection
action find
entity nitric oxide reduction protein NorE    NGR_c09840
relation biological process
action find
entity 6-phosphogluconate dehydrogenase    MSMEG_0002
relation biological process
type metabolic process
{'AND': [['nitric oxide reduction protein NorE    NGR_c09840', 'biological process', {'concept': 'metabolic process'}], ['6-phosphogluconate dehydrogenase    MSMEG_0002', 'biological process', {'concept': 'metabolic process'}]]}
SELECT DISTINCT ?g WHERE { ?g rdf:type ontology:metabolic_process . resource:6-phosphogluconate_dehydrogenase____MSMEG_0002 property:biological_process ?g . resource:nitric_oxide_reduction_protein_NorE____NGR_c09840 property:biological_process ?g }
[]
metabolic process
Q14349764
SYSTEM
oxidation-reduction process
Q14349764
AND((Q24101495,P682,c(Q1057)), (Q27748072,P682,c(Q1057)))
action filter_type
action intersection
action find
entity Q24101495
relation P682
action find
entity Q27748072
relation P682
type Q1057
[ANSWER]
{'AND': [['Q24101495', 'P682', {'concept': 'Q1057'}], ['Q27748072', 'P682', {'concept': 'Q1057'}]]}
SELECT DISTINCT ?g WHERE { ?g rdf:type ontology:Q1057 . resource:Q27748072 property:P682 ?g . resource:Q24101495 property:P682 ?g }
oxidation-reduction process
oxidation-reduction process
action filter_type
action intersection
action find
entity nitric oxide reduction protein NorE    NGR_c09840
relation biological process
action find
entity 6-phosphogluconate dehydrogenase    MSMEG_0002
relation biological process
type metabolic process
{'AND': [['nitric oxide reduction protein NorE    NGR_c09840', 'biological process', {'concept': 'metabolic process'}], ['6-phosphogluconate dehydrogenase    MSMEG_0002', 'biological process', {'concept': 'metabolic process'}]]}
SELECT DISTINCT ?g WHERE { ?g rdf:type ontology:metabolic_process . resource:6-phosphogluconate_dehydrogenase____MSMEG_0002 property:biological_process ?g . resource:nitric_oxide_reduction_protein_NorE____NGR_c09840 property:biological_process ?g }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23494711 Q24101495
P688
Q863908
USER
Which nucleic acid sequences encode nitric oxide reduction protein NorE    NGR_c09840 or hypothetical protein    spr0484 ?
OR((c(Q863908),P688,Q24101495), (c(Q863908),P688,Q23494711))
action filter_type
action union
action find_reverse
entity Q24101495
relation P688
action find_reverse
entity Q23494711
relation P688
type Q863908
{'OR': [[{'concept': 'Q863908'}, 'P688', 'Q24101495'], [{'concept': 'Q863908'}, 'P688', 'Q23494711']]}
SELECT DISTINCT ?h WHERE { ?h rdf:type ontology:Q863908 . { VALUES ( ?a ) { ( resource:Q24101495 ) ( resource:Q23494711 ) } . ?h property:P688 ?a } }
hypothetical protein    spr0484 nitric oxide reduction protein NorE    NGR_c09840
action filter_type
action union
action find_reverse
entity nitric oxide reduction protein NorE    NGR_c09840
relation encodes
action find_reverse
entity hypothetical protein    spr0484
relation encodes
type nucleic acid sequence
{'OR': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'nitric oxide reduction protein NorE    NGR_c09840'], [{'concept': 'nucleic acid sequence'}, 'encodes', 'hypothetical protein    spr0484']]}
SELECT DISTINCT ?h WHERE { ?h rdf:type ontology:nucleic_acid_sequence . { VALUES ( ?a ) { ( resource:nitric_oxide_reduction_protein_NorE____NGR_c09840 ) ( resource:hypothetical_protein____spr0484 ) } . ?h property:encodes ?a } }
[]
nucleic acid sequence
Q23313798 Q23228304
SYSTEM
nitric oxide reduction protein NorE    NGR_c09840, hypothetical protein    spr0484
Q23313798 Q23228304
OR((c(Q863908),P688,Q24101495), (c(Q863908),P688,Q23494711))
action filter_type
action union
action find_reverse
entity Q24101495
relation P688
action find_reverse
entity Q23494711
relation P688
type Q863908
[ANSWERS]
{'OR': [[{'concept': 'Q863908'}, 'P688', 'Q24101495'], [{'concept': 'Q863908'}, 'P688', 'Q23494711']]}
SELECT DISTINCT ?h WHERE { ?h rdf:type ontology:Q863908 . { VALUES ( ?a ) { ( resource:Q24101495 ) ( resource:Q23494711 ) } . ?h property:P688 ?a } }
nitric oxide reduction protein NorE    NGR_c09840 hypothetical protein    spr0484
Nitric oxide reduction protein NorE NGR c09840 and hypothetical protein spr0484 encode nitric oxide reduction protein NorE NGR_c09840 or hypothetical protein spr0484
nitric oxide reduction protein NorE    NGR_c09840 hypothetical protein    spr0484
action filter_type
action union
action find_reverse
entity nitric oxide reduction protein NorE    NGR_c09840
relation encodes
action find_reverse
entity hypothetical protein    spr0484
relation encodes
type nucleic acid sequence
{'OR': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'nitric oxide reduction protein NorE    NGR_c09840'], [{'concept': 'nucleic acid sequence'}, 'encodes', 'hypothetical protein    spr0484']]}
SELECT DISTINCT ?h WHERE { ?h rdf:type ontology:nucleic_acid_sequence . { VALUES ( ?a ) { ( resource:nitric_oxide_reduction_protein_NorE____NGR_c09840 ) ( resource:hypothetical_protein____spr0484 ) } . ?h property:encodes ?a } }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q24101495
P681
Q5058355
USER
What is a component of nitric oxide reduction protein NorE    NGR_c09840 ?
(Q24101495,P681,c(Q5058355))
action filter_type
action find
entity Q24101495
relation P681
type Q5058355
['Q24101495', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?z WHERE { ?z rdf:type ontology:Q5058355 . resource:Q24101495 property:P681 ?z }
nitric oxide reduction protein NorE    NGR_c09840
action filter_type
action find
entity nitric oxide reduction protein NorE    NGR_c09840
relation cell component
type cellular component
['nitric oxide reduction protein NorE    NGR_c09840', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?z WHERE { ?z rdf:type ontology:cellular_component . resource:nitric_oxide_reduction_protein_NorE____NGR_c09840 property:cell_component ?z }
[]
cellular component
Q29548
SYSTEM
plasma membrane
Q29548
(Q24101495,P681,c(Q5058355))
action filter_type
action find
entity Q24101495
relation P681
type Q5058355
A component of nitric oxide reduction protein NorE NGR_c09840 is a [ANSWER]
['Q24101495', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?z WHERE { ?z rdf:type ontology:Q5058355 . resource:Q24101495 property:P681 ?z }
plasma membrane
A component of nitric oxide reduction protein NorE NGR_c09840 is a plasma membrane
plasma membrane
action filter_type
action find
entity nitric oxide reduction protein NorE    NGR_c09840
relation cell component
type cellular component
['nitric oxide reduction protein NorE    NGR_c09840', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?z WHERE { ?z rdf:type ontology:cellular_component . resource:nitric_oxide_reduction_protein_NorE____NGR_c09840 property:cell_component ?z }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q29548
P361
Q5058355
USER
Which cellular components are that one a component of ?
(Q29548,P361,c(Q5058355))
action filter_type
action find
entity Q29548
relation P361
type Q5058355
['Q29548', 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ?d WHERE { ?d rdf:type ontology:Q5058355 . resource:Q29548 property:P361 ?d }
plasma membrane
action filter_type
action find
entity plasma membrane
relation part of
type cellular component
['plasma membrane', 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ?d WHERE { ?d rdf:type ontology:cellular_component . resource:plasma_membrane property:part_of ?d }
[]
cellular component
Q899827 Q22330431 Q14864171
SYSTEM
endomembrane system, unencapsulated part of cell, cell periphery
Q899827 Q22330431 Q14864171
(Q29548,P361,c(Q5058355))
action filter_type
action find
entity Q29548
relation P361
type Q5058355
[ANSWERS] are that one a component of
['Q29548', 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ?d WHERE { ?d rdf:type ontology:Q5058355 . resource:Q29548 property:P361 ?d }
endomembrane system unencapsulated part of cell cell periphery
Endomembrane system, unencapsulated part of cell and cell periphery are that one a component of
endomembrane system unencapsulated part of cell cell periphery
action filter_type
action find
entity plasma membrane
relation part of
type cellular component
['plasma membrane', 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ?d WHERE { ?d rdf:type ontology:cellular_component . resource:plasma_membrane property:part_of ?d }
[]
Simple Question (Direct)
Simple Question|Mult. Entity|Indirect
Q899827 Q22330431 Q14864171
P361
Q5058355
USER
Which cellular components are a component of endomembrane system, unencapsulated part of cell and cell periphery ?
(c(Q5058355),P361,Q899827) (c(Q5058355),P361,Q22330431) (c(Q5058355),P361,Q14864171)
action union
action filter_type
action find_reverse
entity Q899827
relation P361
type Q5058355
action filter_type
action find_reverse
entity Q22330431
relation P361
type Q5058355
action filter_type
action find_reverse
entity Q14864171
relation P361
type Q5058355
[{'concept': 'Q5058355'}, 'P361', 'Q899827'] [{'concept': 'Q5058355'}, 'P361', 'Q22330431'] [{'concept': 'Q5058355'}, 'P361', 'Q14864171']
SELECT DISTINCT ?m WHERE { VALUES ( ?s ) { ( resource:Q899827 ) ( resource:Q22330431 ) } . ?m property:P361 ?s }
endomembrane system unencapsulated part of cell cell periphery
action union
action filter_type
action find_reverse
entity endomembrane system
relation part of
type cellular component
action filter_type
action find_reverse
entity unencapsulated part of cell
relation part of
type cellular component
action filter_type
action find_reverse
entity cell periphery
relation part of
type cellular component
[{'concept': 'cellular component'}, 'part of', 'endomembrane system'] [{'concept': 'cellular component'}, 'part of', 'unencapsulated part of cell'] [{'concept': 'cellular component'}, 'part of', 'cell periphery']
SELECT DISTINCT ?m WHERE { VALUES ( ?s ) { ( resource:endomembrane_system ) ( resource:unencapsulated_part_of_cell ) } . ?m property:part_of ?s }
[]
cellular component
Q29548 Q29548 Q29548
SYSTEM
plasma membrane
Q29548 Q21095308 Q14860540 Q22328495 Q21109092 Q79927 Q29548 Q3824358 Q29548 Q22328085
(c(Q5058355),P361,Q899827) (c(Q5058355),P361,Q22330431) (c(Q5058355),P361,Q14864171)
action union
action filter_type
action find_reverse
entity Q899827
relation P361
type Q5058355
action filter_type
action find_reverse
entity Q22330431
relation P361
type Q5058355
action filter_type
action find_reverse
entity Q14864171
relation P361
type Q5058355
[ANSWER], [ANSWER] and [ANSWER] are a component of endomembrane system, unencapsulated part of cell and cell periphery
[{'concept': 'Q5058355'}, 'P361', 'Q899827'] [{'concept': 'Q5058355'}, 'P361', 'Q22330431'] [{'concept': 'Q5058355'}, 'P361', 'Q14864171']
SELECT DISTINCT ?m WHERE { VALUES ( ?s ) { ( resource:Q899827 ) ( resource:Q22330431 ) } . ?m property:P361 ?s }
plasma membrane retromer complex clathrin-coated pit spitzenkorper nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum plasma membrane intracellular plasma membrane external encapsulating structure
Plasma membrane, plasma membrane and plasma membrane are a component of endomembrane system, unencapsulated part of cell and cell periphery
plasma membrane plasma membrane plasma membrane
action union
action filter_type
action find_reverse
entity endomembrane system
relation part of
type cellular component
action filter_type
action find_reverse
entity unencapsulated part of cell
relation part of
type cellular component
action filter_type
action find_reverse
entity cell periphery
relation part of
type cellular component
[{'concept': 'cellular component'}, 'part of', 'endomembrane system'] [{'concept': 'cellular component'}, 'part of', 'unencapsulated part of cell'] [{'concept': 'cellular component'}, 'part of', 'cell periphery']
SELECT DISTINCT ?m WHERE { VALUES ( ?s ) { ( resource:endomembrane_system ) ( resource:unencapsulated_part_of_cell ) } . ?m property:part_of ?s }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q21108194
Q5058355
USER
And what about UDP-N-acetylglucosamine transferase complex?
(Q21108194,P361,c(Q5058355))
action filter_type
action find
entity Q21108194
relation P361
type Q5058355
['Q21108194', 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ?k WHERE { resource:Q21108194 property:P361 ?k . ?k rdf:type ontology:Q5058355 }
UDP-N-acetylglucosamine transferase complex
action filter_type
action find
entity UDP-N-acetylglucosamine transferase complex
relation part of
type cellular component
['UDP-N-acetylglucosamine transferase complex', 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ?k WHERE { resource:UDP-N-acetylglucosamine_transferase_complex property:part_of ?k . ?k rdf:type ontology:cellular_component }
[]
cellular component
Q14329032
SYSTEM
endoplasmic reticulum membrane
Q14329032
(Q21108194,P361,c(Q5058355))
action filter_type
action find
entity Q21108194
relation P361
type Q5058355
[ANSWER]
['Q21108194', 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ?k WHERE { resource:Q21108194 property:P361 ?k . ?k rdf:type ontology:Q5058355 }
endoplasmic reticulum membrane
endoplasmic reticulum membrane
action filter_type
action find
entity UDP-N-acetylglucosamine transferase complex
relation part of
type cellular component
['UDP-N-acetylglucosamine transferase complex', 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ?k WHERE { resource:UDP-N-acetylglucosamine_transferase_complex property:part_of ?k . ?k rdf:type ontology:cellular_component }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, subject is indirect
Q14329032 Q21109092
P361
Q5058355
USER
Is that one a portion of nuclear outer membrane-endoplasmic reticulum membrane network ?
(Q14329032,P361,Q21109092)
action is_in
entity Q21109092
action find
entity Q14329032
relation P361
['Q14329032', 'P361', 'Q21109092']
ASK WHERE { resource:Q14329032 property:P361 resource:Q21109092 }
endoplasmic reticulum membrane nuclear outer membrane-endoplasmic reticulum membrane network
action is_in
entity nuclear outer membrane-endoplasmic reticulum membrane network
action find
entity endoplasmic reticulum membrane
relation part of
['endoplasmic reticulum membrane', 'part of', 'nuclear outer membrane-endoplasmic reticulum membrane network']
ASK WHERE { resource:endoplasmic_reticulum_membrane property:part_of resource:nuclear_outer_membrane-endoplasmic_reticulum_membrane_network }
[]
cellular component
SYSTEM
YES
(Q14329032,P361,Q21109092)
action is_in
entity Q21109092
action find
entity Q14329032
relation P361
[ANSWER]
['Q14329032', 'P361', 'Q21109092']
ASK WHERE { resource:Q14329032 property:P361 resource:Q21109092 }
Yes
action is_in
entity nuclear outer membrane-endoplasmic reticulum membrane network
action find
entity endoplasmic reticulum membrane
relation part of
['endoplasmic reticulum membrane', 'part of', 'nuclear outer membrane-endoplasmic reticulum membrane network']
ASK WHERE { resource:endoplasmic_reticulum_membrane property:part_of resource:nuclear_outer_membrane-endoplasmic_reticulum_membrane_network }
[]