Simple Question (Direct)
Simple Question
Q23447581
P682
Q2057971
USER
Which health problem is peptidyl-prolyl cis-trans isomerase Mip    CBU_0630 involved in ?
(Q23447581,P682,c(Q2057971))
action filter_type
action find
entity Q23447581
relation P682
type Q2057971
['Q23447581', 'P682', {'concept': 'Q2057971'}]
SELECT DISTINCT ?l WHERE { ?l rdf:type ontology:Q2057971 . resource:Q23447581 property:P682 ?l }
peptidyl-prolyl cis-trans isomerase Mip    CBU_0630
action filter_type
action find
entity peptidyl-prolyl cis-trans isomerase Mip    CBU_0630
relation biological process
type health problem
['peptidyl-prolyl cis-trans isomerase Mip    CBU_0630', 'biological process', {'concept': 'health problem'}]
SELECT DISTINCT ?l WHERE { ?l rdf:type ontology:health_problem . resource:peptidyl-prolyl_cis-trans_isomerase_Mip____CBU_0630 property:biological_process ?l }
[]
health problem
Q372016
SYSTEM
pathogenesis
Q372016
(Q23447581,P682,c(Q2057971))
action filter_type
action find
entity Q23447581
relation P682
type Q2057971
[ANSWER] is peptidyl-prolyl cis-trans isomerase Mip CBU_0630 involved in
['Q23447581', 'P682', {'concept': 'Q2057971'}]
SELECT DISTINCT ?l WHERE { ?l rdf:type ontology:Q2057971 . resource:Q23447581 property:P682 ?l }
pathogenesis
Pathogenesis is peptidyl-prolyl cis-trans isomerase Mip CBU_0630 involved in
pathogenesis
action filter_type
action find
entity peptidyl-prolyl cis-trans isomerase Mip    CBU_0630
relation biological process
type health problem
['peptidyl-prolyl cis-trans isomerase Mip    CBU_0630', 'biological process', {'concept': 'health problem'}]
SELECT DISTINCT ?l WHERE { ?l rdf:type ontology:health_problem . resource:peptidyl-prolyl_cis-trans_isomerase_Mip____CBU_0630 property:biological_process ?l }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23447581
P703
Q631147
USER
Which taxon is peptidyl-prolyl cis-trans isomerase Mip    CBU_0630 a part of ?
(Q23447581,P703,c(Q631147))
action filter_type
action find
entity Q23447581
relation P703
type Q631147
['Q23447581', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?d WHERE { resource:Q23447581 property:P703 ?d . ?d rdf:type ontology:Q631147 }
peptidyl-prolyl cis-trans isomerase Mip    CBU_0630
action filter_type
action find
entity peptidyl-prolyl cis-trans isomerase Mip    CBU_0630
relation found in taxon
type infraspecific name
['peptidyl-prolyl cis-trans isomerase Mip    CBU_0630', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?d WHERE { resource:peptidyl-prolyl_cis-trans_isomerase_Mip____CBU_0630 property:found_in_taxon ?d . ?d rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21064832
SYSTEM
Coxiella burnetii RSA 493
Q21064832
(Q23447581,P703,c(Q631147))
action filter_type
action find
entity Q23447581
relation P703
type Q631147
Is [ANSWER] is peptidyl-prolyl cis-trans isomerase Mip CBU_0630 a part of
['Q23447581', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?d WHERE { resource:Q23447581 property:P703 ?d . ?d rdf:type ontology:Q631147 }
Coxiella burnetii RSA 493
Is Coxiella burnetii RSA 493 is peptidyl-prolyl cis-trans isomerase Mip CBU_0630 a part of
Coxiella burnetii RSA 493
action filter_type
action find
entity peptidyl-prolyl cis-trans isomerase Mip    CBU_0630
relation found in taxon
type infraspecific name
['peptidyl-prolyl cis-trans isomerase Mip    CBU_0630', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?d WHERE { resource:peptidyl-prolyl_cis-trans_isomerase_Mip____CBU_0630 property:found_in_taxon ?d . ?d rdf:type ontology:infraspecific_name }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q23313596
Q631147
USER
And how about excinuclease ABC subunit    BN112_4371?
(Q23313596,P703,c(Q631147))
action filter_type
action find
entity Q23313596
relation P703
type Q631147
['Q23313596', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?j WHERE { resource:Q23313596 property:P703 ?j . ?j rdf:type ontology:Q631147 }
excinuclease ABC subunit    BN112_4371
action filter_type
action find
entity excinuclease ABC subunit    BN112_4371
relation found in taxon
type infraspecific name
['excinuclease ABC subunit    BN112_4371', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?j WHERE { resource:excinuclease_ABC_subunit____BN112_4371 property:found_in_taxon ?j . ?j rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102924
SYSTEM
Bordetella bronchiseptica 253
Q21102924
(Q23313596,P703,c(Q631147))
action filter_type
action find
entity Q23313596
relation P703
type Q631147
[ANSWER]
['Q23313596', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?j WHERE { resource:Q23313596 property:P703 ?j . ?j rdf:type ontology:Q631147 }
Bordetella bronchiseptica 253
Bordetella bronchiseptica 253
action filter_type
action find
entity excinuclease ABC subunit    BN112_4371
relation found in taxon
type infraspecific name
['excinuclease ABC subunit    BN112_4371', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?j WHERE { resource:excinuclease_ABC_subunit____BN112_4371 property:found_in_taxon ?j . ?j rdf:type ontology:infraspecific_name }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q22230558 Q23313596
P702
Q181394
USER
Which nutrients do excinuclease ABC subunit    BN112_4371 or ESX-1 secretion system protein EccCa    Rv3870 encode ?
OR((c(Q181394),P702,Q23313596), (c(Q181394),P702,Q22230558))
action filter_type
action union
action find_reverse
entity Q23313596
relation P702
action find_reverse
entity Q22230558
relation P702
type Q181394
{'OR': [[{'concept': 'Q181394'}, 'P702', 'Q23313596'], [{'concept': 'Q181394'}, 'P702', 'Q22230558']]}
SELECT DISTINCT ?p WHERE { { { ?p property:P702 resource:Q23313596 } UNION { ?p property:P702 resource:Q22230558 } } . ?p rdf:type ontology:Q181394 }
ESX-1 secretion system protein EccCa    Rv3870 excinuclease ABC subunit    BN112_4371
action filter_type
action union
action find_reverse
entity excinuclease ABC subunit    BN112_4371
relation encoded by
action find_reverse
entity ESX-1 secretion system protein EccCa    Rv3870
relation encoded by
type nutrient
{'OR': [[{'concept': 'nutrient'}, 'encoded by', 'excinuclease ABC subunit    BN112_4371'], [{'concept': 'nutrient'}, 'encoded by', 'ESX-1 secretion system protein EccCa    Rv3870']]}
SELECT DISTINCT ?p WHERE { { { ?p property:encoded_by resource:excinuclease_ABC_subunit____BN112_4371 } UNION { ?p property:encoded_by resource:ESX-1_secretion_system_protein_EccCa____Rv3870 } } . ?p rdf:type ontology:nutrient }
[]
nutrient
Q24115845 Q22235427
SYSTEM
excinuclease ABC subunit    BN112_4371, ESX-1 secretion system protein EccCa    Rv3870
Q24115845 Q22235427
OR((c(Q181394),P702,Q23313596), (c(Q181394),P702,Q22230558))
action filter_type
action union
action find_reverse
entity Q23313596
relation P702
action find_reverse
entity Q22230558
relation P702
type Q181394
[ANSWERS]
{'OR': [[{'concept': 'Q181394'}, 'P702', 'Q23313596'], [{'concept': 'Q181394'}, 'P702', 'Q22230558']]}
SELECT DISTINCT ?p WHERE { { { ?p property:P702 resource:Q23313596 } UNION { ?p property:P702 resource:Q22230558 } } . ?p rdf:type ontology:Q181394 }
excinuclease ABC subunit    BN112_4371 ESX-1 secretion system protein EccCa    Rv3870
Excinuclease ABC subunit BN112 4371 and ESX-1 secretion system protein EccCa Rv3870 excinuclease ABC subunit BN112_4371 or ESX-1 secretion system protein EccCa Rv3870 encode
excinuclease ABC subunit    BN112_4371 ESX-1 secretion system protein EccCa    Rv3870
action filter_type
action union
action find_reverse
entity excinuclease ABC subunit    BN112_4371
relation encoded by
action find_reverse
entity ESX-1 secretion system protein EccCa    Rv3870
relation encoded by
type nutrient
{'OR': [[{'concept': 'nutrient'}, 'encoded by', 'excinuclease ABC subunit    BN112_4371'], [{'concept': 'nutrient'}, 'encoded by', 'ESX-1 secretion system protein EccCa    Rv3870']]}
SELECT DISTINCT ?p WHERE { { { ?p property:encoded_by resource:excinuclease_ABC_subunit____BN112_4371 } UNION { ?p property:encoded_by resource:ESX-1_secretion_system_protein_EccCa____Rv3870 } } . ?p rdf:type ontology:nutrient }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Single entity type
P682
Q1057 Q181394
USER
How many metabolic processes are a biological processes that atmost 6464 nutrients are involved in ?
(c(Q181394),P682,c(Q1057))
action count
action atmost
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
value 6464
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ( COUNT ( ?d ) AS ?a ) WHERE { { SELECT DISTINCT ?d ( COUNT ( ?j ) AS ?b ) WHERE { ?j property:P682 ?d . ?d rdf:type ontology:Q1057 . ?j rdf:type ontology:Q181394 } GROUP BY ?d } . FILTER ( ?b <= 6464 ) }
action count
action atmost
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
value 6464
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ( COUNT ( ?d ) AS ?a ) WHERE { { SELECT DISTINCT ?d ( COUNT ( ?j ) AS ?b ) WHERE { ?j property:biological_process ?d . ?d rdf:type ontology:metabolic_process . ?j rdf:type ontology:nutrient } GROUP BY ?d } . FILTER ( ?b <= 6464 ) }
[]
metabolic process nutrient
SYSTEM
78
Q14864889 Q14907628 Q14913194 Q22274727 Q22251129 Q14905693 Q14860777 Q21134382 Q21097138 Q14819379 Q21759902 Q21133617 Q133895 Q21157940 Q21116483 Q14863351 Q21102358 Q21114210 Q14907178 Q21121151 Q14880758 Q21761098 Q14762260 Q22275051 Q21100626 Q14913439 Q14916189 Q14349667 Q21159531 Q21111970 Q898365 Q22274640 Q22279483 Q21119973 Q14865941 Q22282595 Q14907180 Q14907181 Q14905125 Q21096256 Q14863432 Q14902250 Q21124879 Q14909347 Q15313450 Q179924 Q21101220 Q21095286 Q14863986 Q14358591 Q838181 Q21116485 Q14859896 Q21103172 Q22276072 Q14914233 Q14897831 Q14645736 Q14864262 Q14859628 Q14819787 Q21119193 Q22274791 Q14819781 Q22279537 Q22283508 Q14327719 Q22279533 Q21124620 Q14860507 Q21112195 Q14890104 Q14864417 Q14864414 Q21759328 Q900386 Q14912265 Q21760838
(c(Q181394),P682,c(Q1057))
action count
action atmost
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
value 6464
[ANSWER]
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ( COUNT ( ?d ) AS ?a ) WHERE { { SELECT DISTINCT ?d ( COUNT ( ?j ) AS ?b ) WHERE { ?j property:P682 ?d . ?d rdf:type ontology:Q1057 . ?j rdf:type ontology:Q181394 } GROUP BY ?d } . FILTER ( ?b <= 6464 ) }
cellular aromatic compound metabolic process multicellular organism metabolic process cellular ketone body metabolic process secondary metabolic process proteolysis in other organism translational initiation hormone biosynthetic process cofactor metabolic process cellular aldehyde metabolic process one-carbon metabolic process carbon fixation actin modification tricarboxylic acid cycle nitrobenzene metabolic process lymphotoxin A biosynthetic process signal transduction by protein phosphorylation sulfur compound metabolic process regulation of translational initiation by eIF2 alpha dephosphorylation interleukin-2 biosynthetic process reactive nitrogen species metabolic process nucleobase-containing compound metabolic process photosynthesis carbohydrate metabolic process halogenated hydrocarbon metabolic process peptidyl-lysine modification to peptidyl-hypusine organophosphate metabolic process organic acid metabolic process lipid metabolic process selenium compound metabolic process reactive oxygen species biosynthetic process glycosylation cellular biosynthetic process cellular macromolecule metabolic process oxygen metabolic process connective tissue growth factor biosynthetic process ketone body metabolic process interleukin-13 biosynthetic process granulocyte macrophage colony-stimulating factor biosynthetic process neurotransmitter metabolic process cellular carbohydrate metabolic process reactive oxygen species metabolic process telomere maintenance via semi-conservative replication interleukin-8 biosynthetic process flavonoid metabolic process methylation-dependent chromatin silencing bioluminescence wax biosynthetic process amyloid fibril formation hormone catabolic process xenobiotic metabolic process respiratory burst interleukin-6 biosynthetic process cellular amino acid metabolic process DNA protection glycosyl compound metabolic process phosphatidic acid metabolic process isotype switching thyroid hormone metabolic process protein metabolic process cellular lipid metabolic process peptide hormone processing cellular modified amino acid metabolic process organic cyclic compound metabolic process generation of precursor metabolites and energy viral RNA genome replication IRES-dependent viral translational initiation small molecule metabolic process transposon integration transposition, DNA-mediated receptor internalization patched ligand maturation toxin metabolic process heterocycle metabolic process drug metabolic process cellular catabolic process demethylation cellular ketone metabolic process phosphorus metabolic process
78
action count
action atmost
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
value 6464
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ( COUNT ( ?d ) AS ?a ) WHERE { { SELECT DISTINCT ?d ( COUNT ( ?j ) AS ?b ) WHERE { ?j property:biological_process ?d . ?d rdf:type ontology:metabolic_process . ?j rdf:type ontology:nutrient } GROUP BY ?d } . FILTER ( ?b <= 6464 ) }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q22235427
P688
Q863908
USER
Which nucleic acid sequence encodes ESX-1 secretion system protein EccCa    Rv3870 ?
(c(Q863908),P688,Q22235427)
action filter_type
action find_reverse
entity Q22235427
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q22235427']
SELECT DISTINCT ?o WHERE { ?o property:P688 resource:Q22235427 . ?o rdf:type ontology:Q863908 }
ESX-1 secretion system protein EccCa    Rv3870
action filter_type
action find_reverse
entity ESX-1 secretion system protein EccCa    Rv3870
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'ESX-1 secretion system protein EccCa    Rv3870']
SELECT DISTINCT ?o WHERE { ?o property:encodes resource:ESX-1_secretion_system_protein_EccCa____Rv3870 . ?o rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q22230558
SYSTEM
ESX-1 secretion system protein EccCa    Rv3870
Q22230558
(c(Q863908),P688,Q22235427)
action filter_type
action find_reverse
entity Q22235427
relation P688
type Q863908
ESX-1 secretion system protein EccCa Rv3870 encodes ESX-1 secretion system protein EccCa Rv3870
[{'concept': 'Q863908'}, 'P688', 'Q22235427']
SELECT DISTINCT ?o WHERE { ?o property:P688 resource:Q22235427 . ?o rdf:type ontology:Q863908 }
ESX-1 secretion system protein EccCa    Rv3870
ESX-1 secretion system protein EccCa Rv3870 encodes ESX-1 secretion system protein EccCa Rv3870
ESX-1 secretion system protein EccCa    Rv3870
action filter_type
action find_reverse
entity ESX-1 secretion system protein EccCa    Rv3870
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'ESX-1 secretion system protein EccCa    Rv3870']
SELECT DISTINCT ?o WHERE { ?o property:encodes resource:ESX-1_secretion_system_protein_EccCa____Rv3870 . ?o rdf:type ontology:nucleic_acid_sequence }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation|Incomplete
Q24097241 Q22235427
P688
Q863908
USER
Or AttT protein    XCC0329?
OR((c(Q863908),P688,Q22235427), (c(Q863908),P688,Q24097241))
action filter_type
action union
action find_reverse
entity Q22235427
relation P688
action find_reverse
entity Q24097241
relation P688
type Q863908
{'OR': [[{'concept': 'Q863908'}, 'P688', 'Q22235427'], [{'concept': 'Q863908'}, 'P688', 'Q24097241']]}
SELECT DISTINCT ?x WHERE { { VALUES ( ?m ) { ( resource:Q22235427 ) ( resource:Q24097241 ) } . ?x property:P688 ?m } . ?x rdf:type ontology:Q863908 }
AttT protein    XCC0329 ESX-1 secretion system protein EccCa    Rv3870
action filter_type
action union
action find_reverse
entity ESX-1 secretion system protein EccCa    Rv3870
relation encodes
action find_reverse
entity AttT protein    XCC0329
relation encodes
type nucleic acid sequence
{'OR': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'ESX-1 secretion system protein EccCa    Rv3870'], [{'concept': 'nucleic acid sequence'}, 'encodes', 'AttT protein    XCC0329']]}
SELECT DISTINCT ?x WHERE { { VALUES ( ?m ) { ( resource:ESX-1_secretion_system_protein_EccCa____Rv3870 ) ( resource:AttT_protein____XCC0329 ) } . ?x property:encodes ?m } . ?x rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23155994 Q22230558
SYSTEM
AttT protein    XCC0329, ESX-1 secretion system protein EccCa    Rv3870
Q23155994 Q22230558
OR((c(Q863908),P688,Q22235427), (c(Q863908),P688,Q24097241))
action filter_type
action union
action find_reverse
entity Q22235427
relation P688
action find_reverse
entity Q24097241
relation P688
type Q863908
[ANSWERS]
{'OR': [[{'concept': 'Q863908'}, 'P688', 'Q22235427'], [{'concept': 'Q863908'}, 'P688', 'Q24097241']]}
SELECT DISTINCT ?x WHERE { { VALUES ( ?m ) { ( resource:Q22235427 ) ( resource:Q24097241 ) } . ?x property:P688 ?m } . ?x rdf:type ontology:Q863908 }
AttT protein    XCC0329 ESX-1 secretion system protein EccCa    Rv3870
AttT protein    XCC0329 ESX-1 secretion system protein EccCa    Rv3870
action filter_type
action union
action find_reverse
entity ESX-1 secretion system protein EccCa    Rv3870
relation encodes
action find_reverse
entity AttT protein    XCC0329
relation encodes
type nucleic acid sequence
{'OR': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'ESX-1 secretion system protein EccCa    Rv3870'], [{'concept': 'nucleic acid sequence'}, 'encodes', 'AttT protein    XCC0329']]}
SELECT DISTINCT ?x WHERE { { VALUES ( ?m ) { ( resource:ESX-1_secretion_system_protein_EccCa____Rv3870 ) ( resource:AttT_protein____XCC0329 ) } . ?x property:encodes ?m } . ?x rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q22235427
P681
Q15989253
USER
Which is the part that is a component of ESX-1 secretion system protein EccCa    Rv3870 ?
(Q22235427,P681,c(Q15989253))
action filter_type
action find
entity Q22235427
relation P681
type Q15989253
['Q22235427', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?s WHERE { resource:Q22235427 property:P681 ?s . ?s rdf:type ontology:Q15989253 }
ESX-1 secretion system protein EccCa    Rv3870
action filter_type
action find
entity ESX-1 secretion system protein EccCa    Rv3870
relation cell component
type part
['ESX-1 secretion system protein EccCa    Rv3870', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?s WHERE { resource:ESX-1_secretion_system_protein_EccCa____Rv3870 property:cell_component ?s . ?s rdf:type ontology:part }
[]
part
Q14349455
SYSTEM
membrane
Q14349455
(Q22235427,P681,c(Q15989253))
action filter_type
action find
entity Q22235427
relation P681
type Q15989253
The [ANSWER] is the part that is a component of ESX-1 secretion system protein EccCa Rv3870
['Q22235427', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?s WHERE { resource:Q22235427 property:P681 ?s . ?s rdf:type ontology:Q15989253 }
membrane
The membrane is the part that is a component of ESX-1 secretion system protein EccCa Rv3870
membrane
action filter_type
action find
entity ESX-1 secretion system protein EccCa    Rv3870
relation cell component
type part
['ESX-1 secretion system protein EccCa    Rv3870', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?s WHERE { resource:ESX-1_secretion_system_protein_EccCa____Rv3870 property:cell_component ?s . ?s rdf:type ontology:part }
[]