Simple Question (Direct)
Simple Question
Q23584060
P682
Q3249551
USER
What is the process that maltooligosyltrehalose trehalohydrolase    GSU2358 is involved in ?
(Q23584060,P682,c(Q3249551))
action filter_type
action find
entity Q23584060
relation P682
type Q3249551
['Q23584060', 'P682', {'concept': 'Q3249551'}]
SELECT DISTINCT ?x WHERE { resource:Q23584060 property:P682 ?x . ?x rdf:type ontology:Q3249551 }
maltooligosyltrehalose trehalohydrolase    GSU2358
action filter_type
action find
entity maltooligosyltrehalose trehalohydrolase    GSU2358
relation biological process
type process
['maltooligosyltrehalose trehalohydrolase    GSU2358', 'biological process', {'concept': 'process'}]
SELECT DISTINCT ?x WHERE { resource:maltooligosyltrehalose_trehalohydrolase____GSU2358 property:biological_process ?x . ?x rdf:type ontology:process }
[]
process
Q1057
SYSTEM
metabolic process
Q1057
(Q23584060,P682,c(Q3249551))
action filter_type
action find
entity Q23584060
relation P682
type Q3249551
The process that maltooligosyltrehalose trehalohydrolase GSU2358 is involved in is a [ANSWER]
['Q23584060', 'P682', {'concept': 'Q3249551'}]
SELECT DISTINCT ?x WHERE { resource:Q23584060 property:P682 ?x . ?x rdf:type ontology:Q3249551 }
metabolic process
The process that maltooligosyltrehalose trehalohydrolase GSU2358 is involved in is a metabolic process
metabolic process
action filter_type
action find
entity maltooligosyltrehalose trehalohydrolase    GSU2358
relation biological process
type process
['maltooligosyltrehalose trehalohydrolase    GSU2358', 'biological process', {'concept': 'process'}]
SELECT DISTINCT ?x WHERE { resource:maltooligosyltrehalose_trehalohydrolase____GSU2358 property:biological_process ?x . ?x rdf:type ontology:process }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23584060
P703
Q631147
USER
What is the taxon to which maltooligosyltrehalose trehalohydrolase    GSU2358 belongs to ?
(Q23584060,P703,c(Q631147))
action filter_type
action find
entity Q23584060
relation P703
type Q631147
['Q23584060', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?a WHERE { resource:Q23584060 property:P703 ?a . ?a rdf:type ontology:Q631147 }
maltooligosyltrehalose trehalohydrolase    GSU2358
action filter_type
action find
entity maltooligosyltrehalose trehalohydrolase    GSU2358
relation found in taxon
type infraspecific name
['maltooligosyltrehalose trehalohydrolase    GSU2358', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?a WHERE { resource:maltooligosyltrehalose_trehalohydrolase____GSU2358 property:found_in_taxon ?a . ?a rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102999
SYSTEM
Geobacter sulfurreducens PCA
Q21102999
(Q23584060,P703,c(Q631147))
action filter_type
action find
entity Q23584060
relation P703
type Q631147
[ANSWER]
['Q23584060', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?a WHERE { resource:Q23584060 property:P703 ?a . ?a rdf:type ontology:Q631147 }
Geobacter sulfurreducens PCA
Geobacter sulfurreducens PCA
Geobacter sulfurreducens PCA
action filter_type
action find
entity maltooligosyltrehalose trehalohydrolase    GSU2358
relation found in taxon
type infraspecific name
['maltooligosyltrehalose trehalohydrolase    GSU2358', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?a WHERE { resource:maltooligosyltrehalose_trehalohydrolase____GSU2358 property:found_in_taxon ?a . ?a rdf:type ontology:infraspecific_name }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23584060
P681
Q15989253
USER
What is a component of that nutrient ?
(Q21102999,P681,c(Q15989253))
action filter_type
action find
entity Q23584060
relation P681
type Q15989253
['Q21102999', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?e WHERE { resource:Q23584060 property:P681 ?e . ?e rdf:type ontology:Q15989253 }
maltooligosyltrehalose trehalohydrolase    GSU2358
action filter_type
action find
entity maltooligosyltrehalose trehalohydrolase    GSU2358
relation cell component
type part
['Geobacter sulfurreducens PCA', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?e WHERE { resource:maltooligosyltrehalose_trehalohydrolase____GSU2358 property:cell_component ?e . ?e rdf:type ontology:part }
[]
part
Q79899
SYSTEM
cytoplasm
Q79899
(Q21102999,P681,c(Q15989253))
action filter_type
action find
entity Q23584060
relation P681
type Q15989253
A component of that nutrient is the [ANSWER]
['Q21102999', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?e WHERE { resource:Q23584060 property:P681 ?e . ?e rdf:type ontology:Q15989253 }
cytoplasm
A component of that nutrient is the cytoplasm
cytoplasm
action filter_type
action find
entity maltooligosyltrehalose trehalohydrolase    GSU2358
relation cell component
type part
['Geobacter sulfurreducens PCA', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?e WHERE { resource:maltooligosyltrehalose_trehalohydrolase____GSU2358 property:cell_component ?e . ?e rdf:type ontology:part }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q79899 Q21118895
P681
Q181394
USER
Is that part a cell component of Nuclear pore complex protein Nup93 ?
(Q21118895,P681,Q79899)
action is_in
entity Q21118895
action find
entity Q79899
relation P681
['Q21118895', 'P681', 'Q79899']
ASK WHERE { resource:Q79899 property:P681 resource:Q21118895 }
cytoplasm Nuclear pore complex protein Nup93
action is_in
entity Nuclear pore complex protein Nup93
action find
entity cytoplasm
relation cell component
['Nuclear pore complex protein Nup93', 'cell component', 'cytoplasm']
ASK WHERE { resource:cytoplasm property:cell_component resource:Nuclear_pore_complex_protein_Nup93 }
[]
nutrient
SYSTEM
NO
(Q21118895,P681,Q79899)
action is_in
entity Q21118895
action find
entity Q79899
relation P681
[ANSWER]
['Q21118895', 'P681', 'Q79899']
ASK WHERE { resource:Q79899 property:P681 resource:Q21118895 }
No
action is_in
entity Nuclear pore complex protein Nup93
action find
entity cytoplasm
relation cell component
['Nuclear pore complex protein Nup93', 'cell component', 'cytoplasm']
ASK WHERE { resource:cytoplasm property:cell_component resource:Nuclear_pore_complex_protein_Nup93 }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q79899
P361
Q20011319
USER
Which part of a plant is a component of that part ?
action filter_type
action find_reverse
entity Q79899
relation P361
type Q20011319
SELECT DISTINCT ?w WHERE { ?w property:P361 resource:Q79899 . ?w rdf:type ontology:Q20011319 }
cytoplasm
action filter_type
action find_reverse
entity cytoplasm
relation part of
type part of a plant
SELECT DISTINCT ?w WHERE { ?w property:part_of resource:cytoplasm . ?w rdf:type ontology:part_of_a_plant }
[]
part of a plant
Q22329458
SYSTEM
cytoplasmic region
Q22329458
action filter_type
action find_reverse
entity Q79899
relation P361
type Q20011319
[ANSWER] is a component of that part
SELECT DISTINCT ?w WHERE { ?w property:P361 resource:Q79899 . ?w rdf:type ontology:Q20011319 }
cytoplasmic region
Cytoplasmic region is a component of that part
cytoplasmic region
action filter_type
action find_reverse
entity cytoplasm
relation part of
type part of a plant
SELECT DISTINCT ?w WHERE { ?w property:part_of resource:cytoplasm . ?w rdf:type ontology:part_of_a_plant }
[]
Logical Reasoning (All)
Logical|Intersection|Single_Relation
Q21112572 Q79899
P681
Q181394
USER
Which nutrients are cytoplasm and MICOS complex a cell component of ?
AND((c(Q181394),P681,Q79899), (c(Q181394),P681,Q21112572))
action filter_type
action intersection
action find_reverse
entity Q79899
relation P681
action find_reverse
entity Q21112572
relation P681
type Q181394
{'AND': [[{'concept': 'Q181394'}, 'P681', 'Q79899'], [{'concept': 'Q181394'}, 'P681', 'Q21112572']]}
SELECT DISTINCT ?f WHERE { ?f rdf:type ontology:Q181394 . ?f property:P681 resource:Q79899 . ?f property:P681 resource:Q21112572 }
MICOS complex cytoplasm
action filter_type
action intersection
action find_reverse
entity cytoplasm
relation cell component
action find_reverse
entity MICOS complex
relation cell component
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'cell component', 'cytoplasm'], [{'concept': 'nutrient'}, 'cell component', 'MICOS complex']]}
SELECT DISTINCT ?f WHERE { ?f rdf:type ontology:nutrient . ?f property:cell_component resource:cytoplasm . ?f property:cell_component resource:MICOS_complex }
[]
nutrient
Q27552351 Q21112573 Q21433573
SYSTEM
Mic19p YFR011C, MICOS complex subunit MIC19, MICOS complex subunit Mic19
Q27552351 Q21112573 Q21433573
AND((c(Q181394),P681,Q79899), (c(Q181394),P681,Q21112572))
action filter_type
action intersection
action find_reverse
entity Q79899
relation P681
action find_reverse
entity Q21112572
relation P681
type Q181394
[ANSWERS] are cytoplasm and MICOS complex a cell component of
{'AND': [[{'concept': 'Q181394'}, 'P681', 'Q79899'], [{'concept': 'Q181394'}, 'P681', 'Q21112572']]}
SELECT DISTINCT ?f WHERE { ?f rdf:type ontology:Q181394 . ?f property:P681 resource:Q79899 . ?f property:P681 resource:Q21112572 }
Mic19p YFR011C MICOS complex subunit MIC19 MICOS complex subunit Mic19
Mic19p YFR011C, MICOS complex subunit MIC19 and MICOS complex subunit Mic19 are cytoplasm and MICOS complex a cell component of
Mic19p YFR011C MICOS complex subunit MIC19 MICOS complex subunit Mic19
action filter_type
action intersection
action find_reverse
entity cytoplasm
relation cell component
action find_reverse
entity MICOS complex
relation cell component
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'cell component', 'cytoplasm'], [{'concept': 'nutrient'}, 'cell component', 'MICOS complex']]}
SELECT DISTINCT ?f WHERE { ?f rdf:type ontology:nutrient . ?f property:cell_component resource:cytoplasm . ?f property:cell_component resource:MICOS_complex }
[]
Clarification
Quantitative|Count|Single entity type|Indirect
P688
Q863908
USER
How many nucleic acid sequences encode that nutrient ?
(c(Q863908),P688,Q21433573)
[{'concept': 'Q863908'}, 'P688', 'Q21433573']
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { ?z property:P688 resource:Q21433573 . ?z rdf:type ontology:Q863908 }
[{'concept': 'nucleic acid sequence'}, 'encodes', 'MICOS complex subunit Mic19']
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { ?z property:encodes resource:MICOS_complex_subunit_Mic19 . ?z rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Quantitative|Count|Single entity type|Clarification
Q27552351
SYSTEM
Did you mean Mic19p YFR011C ?
(c(Q863908),P688,Q27552351) (c(Q863908),P688,Q21112573) (c(Q863908),P688,Q21433573)
[ANSWER]
[{'concept': 'Q863908'}, 'P688', 'Q27552351'] [{'concept': 'Q863908'}, 'P688', 'Q21112573'] [{'concept': 'Q863908'}, 'P688', 'Q21433573']
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { ?z property:P688 resource:Q21433573 . ?z rdf:type ontology:Q863908 }
Did you mean Mic19p YFR011C ?
Mic19p YFR011C
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Mic19p YFR011C'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'MICOS complex subunit MIC19'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'MICOS complex subunit Mic19']
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { ?z property:encodes resource:MICOS_complex_subunit_Mic19 . ?z rdf:type ontology:nucleic_acid_sequence }
[]
Quantitative Reasoning (Count) (All)
USER
No, I meant MICOS complex subunit Mic19. Could you tell me the answer for that?
(c(Q863908),P688,Q21433573)
Q21433573
[{'concept': 'Q863908'}, 'P688', 'Q21433573']
[{'concept': 'nucleic acid sequence'}, 'encodes', 'MICOS complex subunit Mic19']
[]
SYSTEM
1
Q18261560
(c(Q863908),P688,Q21433573)
[ANSWER]
[{'concept': 'Q863908'}, 'P688', 'Q21433573']
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { ?z property:P688 resource:Q21433573 . ?z rdf:type ontology:Q863908 }
Chchd3
1
[{'concept': 'nucleic acid sequence'}, 'encodes', 'MICOS complex subunit Mic19']
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { ?z property:encodes resource:MICOS_complex_subunit_Mic19 . ?z rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q27552351
P688
Q863908
USER
Which nucleic acid sequence encodes Mic19p YFR011C ?
(c(Q863908),P688,Q27552351)
action filter_type
action find_reverse
entity Q27552351
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q27552351']
SELECT DISTINCT ?i WHERE { ?i property:P688 resource:Q27552351 . ?i rdf:type ontology:Q863908 }
Mic19p YFR011C
action filter_type
action find_reverse
entity Mic19p YFR011C
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Mic19p YFR011C']
SELECT DISTINCT ?i WHERE { ?i property:encodes resource:Mic19p_YFR011C . ?i rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q27545286
SYSTEM
Mic19p YFR011C
Q27545286
(c(Q863908),P688,Q27552351)
action filter_type
action find_reverse
entity Q27552351
relation P688
type Q863908
[ANSWER] encodes [ANSWER]
[{'concept': 'Q863908'}, 'P688', 'Q27552351']
SELECT DISTINCT ?i WHERE { ?i property:P688 resource:Q27552351 . ?i rdf:type ontology:Q863908 }
Mic19p YFR011C
Mic19p YFR011C encodes Mic19p YFR011C
Mic19p YFR011C
action filter_type
action find_reverse
entity Mic19p YFR011C
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Mic19p YFR011C']
SELECT DISTINCT ?i WHERE { ?i property:encodes resource:Mic19p_YFR011C . ?i rdf:type ontology:nucleic_acid_sequence }
[]