Simple Question (Direct)
Simple Question
Q23434224
P682
Q2057971
USER
What is a biological process that toxin co-regulated pilus biosynthesis protein P    VC0826 is involved in ?
(Q23434224,P682,c(Q2057971))
action filter_type
action find
entity Q23434224
relation P682
type Q2057971
['Q23434224', 'P682', {'concept': 'Q2057971'}]
SELECT DISTINCT ?k WHERE { resource:Q23434224 property:P682 ?k . ?k rdf:type ontology:Q2057971 }
toxin co-regulated pilus biosynthesis protein P    VC0826
action filter_type
action find
entity toxin co-regulated pilus biosynthesis protein P    VC0826
relation biological process
type health problem
['toxin co-regulated pilus biosynthesis protein P    VC0826', 'biological process', {'concept': 'health problem'}]
SELECT DISTINCT ?k WHERE { resource:toxin_co-regulated_pilus_biosynthesis_protein_P____VC0826 property:biological_process ?k . ?k rdf:type ontology:health_problem }
[]
health problem
Q372016
SYSTEM
pathogenesis
Q372016
(Q23434224,P682,c(Q2057971))
action filter_type
action find
entity Q23434224
relation P682
type Q2057971
A biological process that toxin co-regulated pilus biosynthesis protein P VC0826 is involved in is pid [ANSWER]
['Q23434224', 'P682', {'concept': 'Q2057971'}]
SELECT DISTINCT ?k WHERE { resource:Q23434224 property:P682 ?k . ?k rdf:type ontology:Q2057971 }
pathogenesis
A biological process that toxin co-regulated pilus biosynthesis protein P VC0826 is involved in is pid pathogenesis
pathogenesis
action filter_type
action find
entity toxin co-regulated pilus biosynthesis protein P    VC0826
relation biological process
type health problem
['toxin co-regulated pilus biosynthesis protein P    VC0826', 'biological process', {'concept': 'health problem'}]
SELECT DISTINCT ?k WHERE { resource:toxin_co-regulated_pilus_biosynthesis_protein_P____VC0826 property:biological_process ?k . ?k rdf:type ontology:health_problem }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23434224
P688
Q863908
USER
Which nucleic acid sequence encodes toxin co-regulated pilus biosynthesis protein P    VC0826 ?
(c(Q863908),P688,Q23434224)
action filter_type
action find_reverse
entity Q23434224
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q23434224']
SELECT DISTINCT ?f WHERE { ?f rdf:type ontology:Q863908 . ?f property:P688 resource:Q23434224 }
toxin co-regulated pilus biosynthesis protein P    VC0826
action filter_type
action find_reverse
entity toxin co-regulated pilus biosynthesis protein P    VC0826
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'toxin co-regulated pilus biosynthesis protein P    VC0826']
SELECT DISTINCT ?f WHERE { ?f rdf:type ontology:nucleic_acid_sequence . ?f property:encodes resource:toxin_co-regulated_pilus_biosynthesis_protein_P____VC0826 }
[]
nucleic acid sequence
Q23128049
SYSTEM
toxin co-regulated pilus biosynthesis protein P    VC0826
Q23128049
(c(Q863908),P688,Q23434224)
action filter_type
action find_reverse
entity Q23434224
relation P688
type Q863908
Toxin co-regulated pilus biosynthesis protein P VC0826 encodes toxin co-regulated pilus biosynthesis protein P VC0826
[{'concept': 'Q863908'}, 'P688', 'Q23434224']
SELECT DISTINCT ?f WHERE { ?f rdf:type ontology:Q863908 . ?f property:P688 resource:Q23434224 }
toxin co-regulated pilus biosynthesis protein P    VC0826
Toxin co-regulated pilus biosynthesis protein P VC0826 encodes toxin co-regulated pilus biosynthesis protein P VC0826
toxin co-regulated pilus biosynthesis protein P    VC0826
action filter_type
action find_reverse
entity toxin co-regulated pilus biosynthesis protein P    VC0826
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'toxin co-regulated pilus biosynthesis protein P    VC0826']
SELECT DISTINCT ?f WHERE { ?f rdf:type ontology:nucleic_acid_sequence . ?f property:encodes resource:toxin_co-regulated_pilus_biosynthesis_protein_P____VC0826 }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23128049
P703
Q16521
USER
Where is that nucleic acid sequence found ?
(Q23128049,P703,c(Q16521))
action filter_type
action find
entity Q23128049
relation P703
type Q16521
['Q23128049', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?h WHERE { resource:Q23128049 property:P703 ?h . ?h rdf:type ontology:Q16521 }
toxin co-regulated pilus biosynthesis protein P    VC0826
action filter_type
action find
entity toxin co-regulated pilus biosynthesis protein P    VC0826
relation found in taxon
type taxon
['toxin co-regulated pilus biosynthesis protein P    VC0826', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?h WHERE { resource:toxin_co-regulated_pilus_biosynthesis_protein_P____VC0826 property:found_in_taxon ?h . ?h rdf:type ontology:taxon }
[]
taxon
Q21102945
SYSTEM
Vibrio cholerae O1 biovar El Tor str. N16961
Q21102945
(Q23128049,P703,c(Q16521))
action filter_type
action find
entity Q23128049
relation P703
type Q16521
That nucleic acid sequence is found in [ANSWER]
['Q23128049', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?h WHERE { resource:Q23128049 property:P703 ?h . ?h rdf:type ontology:Q16521 }
Vibrio cholerae O1 biovar El Tor str. N16961
That nucleic acid sequence is found in Vibrio cholerae O1 biovar El Tor str. N16961
Vibrio cholerae O1 biovar El Tor str. N16961
action filter_type
action find
entity toxin co-regulated pilus biosynthesis protein P    VC0826
relation found in taxon
type taxon
['toxin co-regulated pilus biosynthesis protein P    VC0826', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?h WHERE { resource:toxin_co-regulated_pilus_biosynthesis_protein_P____VC0826 property:found_in_taxon ?h . ?h rdf:type ontology:taxon }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23128049
P702
Q181394
USER
What gene does that nucleic acid sequence encode ?
(c(Q181394),P702,Q21102945)
action filter_type
action find_reverse
entity Q23128049
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q21102945']
SELECT DISTINCT ?l WHERE { ?l property:P702 resource:Q23128049 . ?l rdf:type ontology:Q181394 }
toxin co-regulated pilus biosynthesis protein P    VC0826
action filter_type
action find_reverse
entity toxin co-regulated pilus biosynthesis protein P    VC0826
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'Vibrio cholerae O1 biovar El Tor str. N16961']
SELECT DISTINCT ?l WHERE { ?l property:encoded_by resource:toxin_co-regulated_pilus_biosynthesis_protein_P____VC0826 . ?l rdf:type ontology:nutrient }
[]
nutrient
Q23434224
SYSTEM
toxin co-regulated pilus biosynthesis protein P    VC0826
Q23434224
(c(Q181394),P702,Q21102945)
action filter_type
action find_reverse
entity Q23128049
relation P702
type Q181394
That nucleic acid sequence encodes the toxin co-regulated pilus biosynthesis protein P VC0826
[{'concept': 'Q181394'}, 'P702', 'Q21102945']
SELECT DISTINCT ?l WHERE { ?l property:P702 resource:Q23128049 . ?l rdf:type ontology:Q181394 }
toxin co-regulated pilus biosynthesis protein P    VC0826
That nucleic acid sequence encodes the toxin co-regulated pilus biosynthesis protein P VC0826
toxin co-regulated pilus biosynthesis protein P    VC0826
action filter_type
action find_reverse
entity toxin co-regulated pilus biosynthesis protein P    VC0826
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'Vibrio cholerae O1 biovar El Tor str. N16961']
SELECT DISTINCT ?l WHERE { ?l property:encoded_by resource:toxin_co-regulated_pilus_biosynthesis_protein_P____VC0826 . ?l rdf:type ontology:nutrient }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Logical operators
Q23434224
P681
Q15989253 Q5058355
USER
How many parts or cellular components are the cell components of toxin co-regulated pilus biosynthesis protein P    VC0826 ?
(Q23434224,P681,c(Q15989253)) (Q23434224,P681,c(Q5058355))
action count
action union
action filter_type
action find
entity Q23434224
relation P681
type Q15989253
action filter_type
action find
entity Q23434224
relation P681
type Q5058355
['Q23434224', 'P681', {'concept': 'Q15989253'}] ['Q23434224', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ( COUNT ( ?g ) AS ?y ) WHERE { { resource:Q23434224 property:P681 ?g . ?g rdf:type ontology:Q15989253 } UNION { resource:Q23434224 property:P681 ?g . ?g rdf:type ontology:Q5058355 } }
toxin co-regulated pilus biosynthesis protein P    VC0826
action count
action union
action filter_type
action find
entity toxin co-regulated pilus biosynthesis protein P    VC0826
relation cell component
type part
action filter_type
action find
entity toxin co-regulated pilus biosynthesis protein P    VC0826
relation cell component
type cellular component
['toxin co-regulated pilus biosynthesis protein P    VC0826', 'cell component', {'concept': 'part'}] ['toxin co-regulated pilus biosynthesis protein P    VC0826', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ( COUNT ( ?g ) AS ?y ) WHERE { { resource:toxin_co-regulated_pilus_biosynthesis_protein_P____VC0826 property:cell_component ?g . ?g rdf:type ontology:part } UNION { resource:toxin_co-regulated_pilus_biosynthesis_protein_P____VC0826 property:cell_component ?g . ?g rdf:type ontology:cellular_component } }
[]
part cellular component
SYSTEM
3
Q29548 Q3824358 Q14349455
(Q23434224,P681,c(Q15989253)) (Q23434224,P681,c(Q5058355))
action count
action union
action filter_type
action find
entity Q23434224
relation P681
type Q15989253
action filter_type
action find
entity Q23434224
relation P681
type Q5058355
[ANSWER]
['Q23434224', 'P681', {'concept': 'Q15989253'}] ['Q23434224', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ( COUNT ( ?g ) AS ?y ) WHERE { { resource:Q23434224 property:P681 ?g . ?g rdf:type ontology:Q15989253 } UNION { resource:Q23434224 property:P681 ?g . ?g rdf:type ontology:Q5058355 } }
plasma membrane intracellular membrane
3
action count
action union
action filter_type
action find
entity toxin co-regulated pilus biosynthesis protein P    VC0826
relation cell component
type part
action filter_type
action find
entity toxin co-regulated pilus biosynthesis protein P    VC0826
relation cell component
type cellular component
['toxin co-regulated pilus biosynthesis protein P    VC0826', 'cell component', {'concept': 'part'}] ['toxin co-regulated pilus biosynthesis protein P    VC0826', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ( COUNT ( ?g ) AS ?y ) WHERE { { resource:toxin_co-regulated_pilus_biosynthesis_protein_P____VC0826 property:cell_component ?g . ?g rdf:type ontology:part } UNION { resource:toxin_co-regulated_pilus_biosynthesis_protein_P____VC0826 property:cell_component ?g . ?g rdf:type ontology:cellular_component } }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23434224
P680
Q2996394
USER
What represents the molecular function of toxin co-regulated pilus biosynthesis protein P    VC0826 ?
(Q23434224,P680,c(Q2996394))
action filter_type
action find
entity Q23434224
relation P680
type Q2996394
['Q23434224', 'P680', {'concept': 'Q2996394'}]
SELECT DISTINCT ?j WHERE { resource:Q23434224 property:P680 ?j . ?j rdf:type ontology:Q2996394 }
toxin co-regulated pilus biosynthesis protein P    VC0826
action filter_type
action find
entity toxin co-regulated pilus biosynthesis protein P    VC0826
relation molecular function
type biological process
['toxin co-regulated pilus biosynthesis protein P    VC0826', 'molecular function', {'concept': 'biological process'}]
SELECT DISTINCT ?j WHERE { resource:toxin_co-regulated_pilus_biosynthesis_protein_P____VC0826 property:molecular_function ?j . ?j rdf:type ontology:biological_process }
[]
biological process
Q14860489
SYSTEM
molecular function
Q14860489
(Q23434224,P680,c(Q2996394))
action filter_type
action find
entity Q23434224
relation P680
type Q2996394
The [ANSWER] represents the [ANSWER] of toxin co-regulated pilus biosynthesis protein P VC0826
['Q23434224', 'P680', {'concept': 'Q2996394'}]
SELECT DISTINCT ?j WHERE { resource:Q23434224 property:P680 ?j . ?j rdf:type ontology:Q2996394 }
molecular function
The molecular function represents the molecular function of toxin co-regulated pilus biosynthesis protein P VC0826
molecular function
action filter_type
action find
entity toxin co-regulated pilus biosynthesis protein P    VC0826
relation molecular function
type biological process
['toxin co-regulated pilus biosynthesis protein P    VC0826', 'molecular function', {'concept': 'biological process'}]
SELECT DISTINCT ?j WHERE { resource:toxin_co-regulated_pilus_biosynthesis_protein_P____VC0826 property:molecular_function ?j . ?j rdf:type ontology:biological_process }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q27551436
Q2996394
USER
And also tell me about type I HSP40 co-chaperone YDJ1 YNL064C?
(Q27551436,P682,c(Q2996394))
action filter_type
action find
entity Q27551436
relation P682
type Q2996394
['Q27551436', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?h WHERE { resource:Q27551436 property:P682 ?h . ?h rdf:type ontology:Q2996394 }
type I HSP40 co-chaperone YDJ1 YNL064C
action filter_type
action find
entity type I HSP40 co-chaperone YDJ1 YNL064C
relation biological process
type biological process
['type I HSP40 co-chaperone YDJ1 YNL064C', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?h WHERE { resource:type_I_HSP40_co-chaperone_YDJ1_YNL064C property:biological_process ?h . ?h rdf:type ontology:biological_process }
[]
biological process
Q847556
SYSTEM
protein folding
Q847556
(Q27551436,P682,c(Q2996394))
action filter_type
action find
entity Q27551436
relation P682
type Q2996394
[ANSWER]
['Q27551436', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?h WHERE { resource:Q27551436 property:P682 ?h . ?h rdf:type ontology:Q2996394 }
protein folding
protein folding
action filter_type
action find
entity type I HSP40 co-chaperone YDJ1 YNL064C
relation biological process
type biological process
['type I HSP40 co-chaperone YDJ1 YNL064C', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?h WHERE { resource:type_I_HSP40_co-chaperone_YDJ1_YNL064C property:biological_process ?h . ?h rdf:type ontology:biological_process }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q847556 Q21114617
P682
Q181394
USER
Is Glucosidase 2 subunit beta involved in that biological process ?
(Q21114617,P682,Q847556)
action is_in
entity Q847556
action find
entity Q21114617
relation P682
['Q21114617', 'P682', 'Q847556']
ASK WHERE { resource:Q21114617 property:P682 resource:Q847556 }
protein folding Glucosidase 2 subunit beta
action is_in
entity protein folding
action find
entity Glucosidase 2 subunit beta
relation biological process
['Glucosidase 2 subunit beta', 'biological process', 'protein folding']
ASK WHERE { resource:Glucosidase_2_subunit_beta property:biological_process resource:protein_folding }
[]
nutrient
SYSTEM
YES
(Q21114617,P682,Q847556)
action is_in
entity Q847556
action find
entity Q21114617
relation P682
[ANSWER]
['Q21114617', 'P682', 'Q847556']
ASK WHERE { resource:Q21114617 property:P682 resource:Q847556 }
Yes
action is_in
entity protein folding
action find
entity Glucosidase 2 subunit beta
relation biological process
['Glucosidase 2 subunit beta', 'biological process', 'protein folding']
ASK WHERE { resource:Glucosidase_2_subunit_beta property:biological_process resource:protein_folding }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q181394 Q8386 Q79529
USER
How many nutrients do exactly 15 drugs or chemical substances contact with ?
(c(Q8386)|c(Q79529),P129,c(Q181394))
action count
action equal
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
value 15
[[{'concept': 'Q8386'}, {'concept': 'Q79529'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?o ) AS ?w ) WHERE { FILTER ( ?c = 15 ) . { SELECT DISTINCT ( COUNT ( ?g ) AS ?c ) ?o WHERE { { ?g property:P129 ?o . ?o rdf:type ontology:Q181394 . ?g rdf:type ontology:Q8386 } UNION { ?g property:P129 ?o . ?g rdf:type ontology:Q79529 . ?o rdf:type ontology:Q181394 } } GROUP BY ?o } }
action count
action equal
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
value 15
[[{'concept': 'drug'}, {'concept': 'chemical substance'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?o ) AS ?w ) WHERE { FILTER ( ?c = 15 ) . { SELECT DISTINCT ( COUNT ( ?g ) AS ?c ) ?o WHERE { { ?g property:physically_interacts_with ?o . ?o rdf:type ontology:nutrient . ?g rdf:type ontology:drug } UNION { ?g property:physically_interacts_with ?o . ?g rdf:type ontology:chemical_substance . ?o rdf:type ontology:nutrient } } GROUP BY ?o } }
[]
nutrient drug chemical substance
SYSTEM
4
Q2271947 Q21172390 Q5629167 Q21109359
(c(Q8386)|c(Q79529),P129,c(Q181394))
action count
action equal
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
value 15
[ANSWER]
[[{'concept': 'Q8386'}, {'concept': 'Q79529'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?o ) AS ?w ) WHERE { FILTER ( ?c = 15 ) . { SELECT DISTINCT ( COUNT ( ?g ) AS ?c ) ?o WHERE { { ?g property:P129 ?o . ?o rdf:type ontology:Q181394 . ?g rdf:type ontology:Q8386 } UNION { ?g property:P129 ?o . ?g rdf:type ontology:Q79529 . ?o rdf:type ontology:Q181394 } } GROUP BY ?o } }
Sodium-dependent dopamine transporter Vascular endothelial growth factor receptor 2 Histone deacetylase 1 5-hydroxytryptamine receptor 5A
4
action count
action equal
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
value 15
[[{'concept': 'drug'}, {'concept': 'chemical substance'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?o ) AS ?w ) WHERE { FILTER ( ?c = 15 ) . { SELECT DISTINCT ( COUNT ( ?g ) AS ?c ) ?o WHERE { { ?g property:physically_interacts_with ?o . ?o rdf:type ontology:nutrient . ?g rdf:type ontology:drug } UNION { ?g property:physically_interacts_with ?o . ?g rdf:type ontology:chemical_substance . ?o rdf:type ontology:nutrient } } GROUP BY ?o } }
[]