Simple Question (Direct)
Simple Question
Q27548902
P682
Q2996394
USER
What are the biological processes that Afb1p YLR040C are involved in ?
(Q27548902,P682,c(Q2996394))
action filter_type
action find
entity Q27548902
relation P682
type Q2996394
['Q27548902', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:Q2996394 . resource:Q27548902 property:P682 ?j }
Afb1p YLR040C
action filter_type
action find
entity Afb1p YLR040C
relation biological process
type biological process
['Afb1p YLR040C', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:biological_process . resource:Afb1p_YLR040C property:biological_process ?j }
[]
biological process
Q22271536 Q14819911
SYSTEM
response to pheromone involved in conjugation with cellular fusion, response to stress
Q22271536 Q14819911
(Q27548902,P682,c(Q2996394))
action filter_type
action find
entity Q27548902
relation P682
type Q2996394
The biological processes that Afb 1p YLR040 C are involved in are in [ANSWERS]
['Q27548902', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:Q2996394 . resource:Q27548902 property:P682 ?j }
response to pheromone involved in conjugation with cellular fusion response to stress
The biological processes that Afb 1p YLR040 C are involved in are in response to pheromone involved in conjugation with cellular fusion and response to stress
response to pheromone involved in conjugation with cellular fusion response to stress
action filter_type
action find
entity Afb1p YLR040C
relation biological process
type biological process
['Afb1p YLR040C', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:biological_process . resource:Afb1p_YLR040C property:biological_process ?j }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q27548902
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(c(Q863908),P688,Q22271536) (c(Q863908),P688,Q14819911)
action filter_type
action find_reverse
entity Q27548902
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q22271536'] [{'concept': 'Q863908'}, 'P688', 'Q14819911']
SELECT DISTINCT ?g WHERE { ?g property:P688 resource:Q27548902 . ?g rdf:type ontology:Q863908 }
Afb1p YLR040C
action filter_type
action find_reverse
entity Afb1p YLR040C
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'response to pheromone involved in conjugation with cellular fusion'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'response to stress']
SELECT DISTINCT ?g WHERE { ?g property:encodes resource:Afb1p_YLR040C . ?g rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q27541795
SYSTEM
Afb1p YLR040C
Q27541795
(c(Q863908),P688,Q22271536) (c(Q863908),P688,Q14819911)
action filter_type
action find_reverse
entity Q27548902
relation P688
type Q863908
[ANSWER] encodes that nutrient
[{'concept': 'Q863908'}, 'P688', 'Q22271536'] [{'concept': 'Q863908'}, 'P688', 'Q14819911']
SELECT DISTINCT ?g WHERE { ?g property:P688 resource:Q27548902 . ?g rdf:type ontology:Q863908 }
Afb1p YLR040C
Afb1p YLR040C encodes that nutrient
Afb1p YLR040C
action filter_type
action find_reverse
entity Afb1p YLR040C
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'response to pheromone involved in conjugation with cellular fusion'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'response to stress']
SELECT DISTINCT ?g WHERE { ?g property:encodes resource:Afb1p_YLR040C . ?g rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|3 entities, all direct, 2 are query entities
Q27541795 Q24228129 Q27548902
P688
Q181394
USER
Does Afb1p YLR040C encode bll4570    bll4570 and Afb1p YLR040C ?
(Q27541795,P688,Q24228129) (Q27541795,P688,Q27548902)
action is_in
entity Q27541795
action intersection
action find_reverse
entity Q24228129
relation P688
action find_reverse
entity Q27548902
relation P688
['Q27541795', 'P688', 'Q24228129'] ['Q27541795', 'P688', 'Q27548902']
ASK WHERE { resource:Q27541795 property:P688 resource:Q24228129 . resource:Q27541795 property:P688 resource:Q27548902 }
Afb1p YLR040C bll4570    bll4570 Afb1p YLR040C
action is_in
entity Afb1p YLR040C
action intersection
action find_reverse
entity bll4570    bll4570
relation encodes
action find_reverse
entity Afb1p YLR040C
relation encodes
['Afb1p YLR040C', 'encodes', 'bll4570    bll4570'] ['Afb1p YLR040C', 'encodes', 'Afb1p YLR040C']
ASK WHERE { resource:Afb1p_YLR040C property:encodes resource:bll4570____bll4570 . resource:Afb1p_YLR040C property:encodes resource:Afb1p_YLR040C }
[]
nutrient
SYSTEM
NO and YES respectively
(Q27541795,P688,Q24228129) (Q27541795,P688,Q27548902)
action is_in
entity Q27541795
action intersection
action find_reverse
entity Q24228129
relation P688
action find_reverse
entity Q27548902
relation P688
[ANSWER]
['Q27541795', 'P688', 'Q24228129'] ['Q27541795', 'P688', 'Q27548902']
ASK WHERE { resource:Q27541795 property:P688 resource:Q24228129 . resource:Q27541795 property:P688 resource:Q27548902 }
NO and YES respectively
action is_in
entity Afb1p YLR040C
action intersection
action find_reverse
entity bll4570    bll4570
relation encodes
action find_reverse
entity Afb1p YLR040C
relation encodes
['Afb1p YLR040C', 'encodes', 'bll4570    bll4570'] ['Afb1p YLR040C', 'encodes', 'Afb1p YLR040C']
ASK WHERE { resource:Afb1p_YLR040C property:encodes resource:bll4570____bll4570 . resource:Afb1p_YLR040C property:encodes resource:Afb1p_YLR040C }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q27541795
P702
Q181394
USER
What is the gene that is encoded by that nucleic acid sequence ?
action filter_type
action find_reverse
entity Q27541795
relation P702
type Q181394
SELECT DISTINCT ?x WHERE { ?x property:P702 resource:Q27541795 . ?x rdf:type ontology:Q181394 }
Afb1p YLR040C
action filter_type
action find_reverse
entity Afb1p YLR040C
relation encoded by
type nutrient
SELECT DISTINCT ?x WHERE { ?x property:encoded_by resource:Afb1p_YLR040C . ?x rdf:type ontology:nutrient }
[]
nutrient
Q27548902
SYSTEM
Afb1p YLR040C
Q27548902
action filter_type
action find_reverse
entity Q27541795
relation P702
type Q181394
The gene that is encoded by that nucleic acid sequence is [ANSWER]
SELECT DISTINCT ?x WHERE { ?x property:P702 resource:Q27541795 . ?x rdf:type ontology:Q181394 }
Afb1p YLR040C
The gene that is encoded by that nucleic acid sequence is Afb1p YLR040C
Afb1p YLR040C
action filter_type
action find_reverse
entity Afb1p YLR040C
relation encoded by
type nutrient
SELECT DISTINCT ?x WHERE { ?x property:encoded_by resource:Afb1p_YLR040C . ?x rdf:type ontology:nutrient }
[]
Verification (Boolean) (All)
Verification|3 entities, 2 direct, 2(direct) are query entities, subject is indirect
Q27548902 Q20769716 Q27541795
P702
Q863908
USER
Does LOC105372565 and Afb1p YLR040C encode Q27548902 ?
(Q27548902,P702,Q20769716) (Q27548902,P702,Q27541795)
action is_in
entity Q27548902
action intersection
action find_reverse
entity Q20769716
relation P702
action find_reverse
entity Q27541795
relation P702
['Q27548902', 'P702', 'Q20769716'] ['Q27548902', 'P702', 'Q27541795']
ASK WHERE { resource:Q27548902 property:P702 resource:Q27541795 . resource:Q27548902 property:P702 resource:Q20769716 }
Afb1p YLR040C LOC105372565 Afb1p YLR040C
action is_in
entity Afb1p YLR040C
action intersection
action find_reverse
entity LOC105372565
relation encoded by
action find_reverse
entity Afb1p YLR040C
relation encoded by
['Afb1p YLR040C', 'encoded by', 'LOC105372565'] ['Afb1p YLR040C', 'encoded by', 'Afb1p YLR040C']
ASK WHERE { resource:Afb1p_YLR040C property:encoded_by resource:Afb1p_YLR040C . resource:Afb1p_YLR040C property:encoded_by resource:LOC105372565 }
[]
nucleic acid sequence
SYSTEM
NO and YES respectively
(Q27548902,P702,Q20769716) (Q27548902,P702,Q27541795)
action is_in
entity Q27548902
action intersection
action find_reverse
entity Q20769716
relation P702
action find_reverse
entity Q27541795
relation P702
[ANSWER]
['Q27548902', 'P702', 'Q20769716'] ['Q27548902', 'P702', 'Q27541795']
ASK WHERE { resource:Q27548902 property:P702 resource:Q27541795 . resource:Q27548902 property:P702 resource:Q20769716 }
NO and YES respectively
action is_in
entity Afb1p YLR040C
action intersection
action find_reverse
entity LOC105372565
relation encoded by
action find_reverse
entity Afb1p YLR040C
relation encoded by
['Afb1p YLR040C', 'encoded by', 'LOC105372565'] ['Afb1p YLR040C', 'encoded by', 'Afb1p YLR040C']
ASK WHERE { resource:Afb1p_YLR040C property:encoded_by resource:Afb1p_YLR040C . resource:Afb1p_YLR040C property:encoded_by resource:LOC105372565 }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q27548902
P681
Q20011319
USER
Which part of a plant is a component of that nutrient ?
action filter_type
action find
entity Q27548902
relation P681
type Q20011319
SELECT DISTINCT ?s WHERE { resource:Q27548902 property:P681 ?s . ?s rdf:type ontology:Q20011319 }
Afb1p YLR040C
action filter_type
action find
entity Afb1p YLR040C
relation cell component
type part of a plant
SELECT DISTINCT ?s WHERE { resource:Afb1p_YLR040C property:cell_component ?s . ?s rdf:type ontology:part_of_a_plant }
[]
part of a plant
Q22328088
SYSTEM
fungal-type cell wall
Q22328088
action filter_type
action find
entity Q27548902
relation P681
type Q20011319
[ANSWER] is a component of that nutrient
SELECT DISTINCT ?s WHERE { resource:Q27548902 property:P681 ?s . ?s rdf:type ontology:Q20011319 }
fungal-type cell wall
Fungal-type cell wall is a component of that nutrient
fungal-type cell wall
action filter_type
action find
entity Afb1p YLR040C
relation cell component
type part of a plant
SELECT DISTINCT ?s WHERE { resource:Afb1p_YLR040C property:cell_component ?s . ?s rdf:type ontology:part_of_a_plant }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q27548902
P703
Q631147
USER
Which taxon does Afb1p YLR040C belong to ?
(Q27548902,P703,c(Q631147))
action filter_type
action find
entity Q27548902
relation P703
type Q631147
['Q27548902', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:Q631147 . resource:Q27548902 property:P703 ?x }
Afb1p YLR040C
action filter_type
action find
entity Afb1p YLR040C
relation found in taxon
type infraspecific name
['Afb1p YLR040C', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:infraspecific_name . resource:Afb1p_YLR040C property:found_in_taxon ?x }
[]
infraspecific name
Q27510868
SYSTEM
Saccharomyces cerevisiae S288c
Q27510868
(Q27548902,P703,c(Q631147))
action filter_type
action find
entity Q27548902
relation P703
type Q631147
Afb 1p YLR040 C belongs to [ANSWER]
['Q27548902', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:Q631147 . resource:Q27548902 property:P703 ?x }
Saccharomyces cerevisiae S288c
Afb 1p YLR040 C belongs to Saccharomyces cerevisiae S288c
Saccharomyces cerevisiae S288c
action filter_type
action find
entity Afb1p YLR040C
relation found in taxon
type infraspecific name
['Afb1p YLR040C', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:infraspecific_name . resource:Afb1p_YLR040C property:found_in_taxon ?x }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation|Incomplete
Q24092667 Q27548902
P703
Q631147
USER
Or ammonia monooxygenase    Psyr_3969?
OR((Q27548902,P703,c(Q631147)), (Q24092667,P703,c(Q631147)))
action filter_type
action union
action find
entity Q27548902
relation P703
action find
entity Q24092667
relation P703
type Q631147
{'OR': [['Q27548902', 'P703', {'concept': 'Q631147'}], ['Q24092667', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?p WHERE { { { resource:Q24092667 property:P703 ?p } UNION { resource:Q27548902 property:P703 ?p } } . ?p rdf:type ontology:Q631147 }
ammonia monooxygenase    Psyr_3969 Afb1p YLR040C
action filter_type
action union
action find
entity Afb1p YLR040C
relation found in taxon
action find
entity ammonia monooxygenase    Psyr_3969
relation found in taxon
type infraspecific name
{'OR': [['Afb1p YLR040C', 'found in taxon', {'concept': 'infraspecific name'}], ['ammonia monooxygenase    Psyr_3969', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?p WHERE { { { resource:ammonia_monooxygenase____Psyr_3969 property:found_in_taxon ?p } UNION { resource:Afb1p_YLR040C property:found_in_taxon ?p } } . ?p rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21079490 Q27510868
SYSTEM
Pseudomonas syringae pv. syringae B728a, Saccharomyces cerevisiae S288c
Q21079490 Q27510868
OR((Q27548902,P703,c(Q631147)), (Q24092667,P703,c(Q631147)))
action filter_type
action union
action find
entity Q27548902
relation P703
action find
entity Q24092667
relation P703
type Q631147
[ANSWERS]
{'OR': [['Q27548902', 'P703', {'concept': 'Q631147'}], ['Q24092667', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?p WHERE { { { resource:Q24092667 property:P703 ?p } UNION { resource:Q27548902 property:P703 ?p } } . ?p rdf:type ontology:Q631147 }
Pseudomonas syringae pv. syringae B728a Saccharomyces cerevisiae S288c
Pseudomonas syringae pv. syringae B728a Saccharomyces cerevisiae S288c
action filter_type
action union
action find
entity Afb1p YLR040C
relation found in taxon
action find
entity ammonia monooxygenase    Psyr_3969
relation found in taxon
type infraspecific name
{'OR': [['Afb1p YLR040C', 'found in taxon', {'concept': 'infraspecific name'}], ['ammonia monooxygenase    Psyr_3969', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?p WHERE { { { resource:ammonia_monooxygenase____Psyr_3969 property:found_in_taxon ?p } UNION { resource:Afb1p_YLR040C property:found_in_taxon ?p } } . ?p rdf:type ontology:infraspecific_name }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Mult. entity type
Q24092667 Q23257162
P702
Q863908
USER
How many nucleic acid sequences are the gene that encodes ammonia monooxygenase    Psyr_3969 or amidase    Mb2912c ?
(Q24092667,P702,c(Q863908)) (Q23257162,P702,c(Q863908))
action count
action union
action filter_type
action find
entity Q24092667
relation P702
type Q863908
action filter_type
action find
entity Q23257162
relation P702
type Q863908
['Q24092667', 'P702', {'concept': 'Q863908'}] ['Q23257162', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ( COUNT ( ?r ) AS ?c ) WHERE { VALUES ( ?f ) { ( resource:Q24092667 ) ( resource:Q23257162 ) } . ?f property:P702 ?r }
ammonia monooxygenase    Psyr_3969 amidase    Mb2912c
action count
action union
action filter_type
action find
entity ammonia monooxygenase    Psyr_3969
relation encoded by
type nucleic acid sequence
action filter_type
action find
entity amidase    Mb2912c
relation encoded by
type nucleic acid sequence
['ammonia monooxygenase    Psyr_3969', 'encoded by', {'concept': 'nucleic acid sequence'}] ['amidase    Mb2912c', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ( COUNT ( ?r ) AS ?c ) WHERE { VALUES ( ?f ) { ( resource:ammonia_monooxygenase____Psyr_3969 ) ( resource:amidase____Mb2912c ) } . ?f property:encoded_by ?r }
[]
nucleic acid sequence
SYSTEM
2
Q23257162 Q23144457
(Q24092667,P702,c(Q863908)) (Q23257162,P702,c(Q863908))
action count
action union
action filter_type
action find
entity Q24092667
relation P702
type Q863908
action filter_type
action find
entity Q23257162
relation P702
type Q863908
[ANSWER]
['Q24092667', 'P702', {'concept': 'Q863908'}] ['Q23257162', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ( COUNT ( ?r ) AS ?c ) WHERE { VALUES ( ?f ) { ( resource:Q24092667 ) ( resource:Q23257162 ) } . ?f property:P702 ?r }
amidase    Mb2912c ammonia monooxygenase    Psyr_3969
2
action count
action union
action filter_type
action find
entity ammonia monooxygenase    Psyr_3969
relation encoded by
type nucleic acid sequence
action filter_type
action find
entity amidase    Mb2912c
relation encoded by
type nucleic acid sequence
['ammonia monooxygenase    Psyr_3969', 'encoded by', {'concept': 'nucleic acid sequence'}] ['amidase    Mb2912c', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ( COUNT ( ?r ) AS ?c ) WHERE { VALUES ( ?f ) { ( resource:ammonia_monooxygenase____Psyr_3969 ) ( resource:amidase____Mb2912c ) } . ?f property:encoded_by ?r }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Single entity type
P682
Q1190554 Q181394
USER
How many events are atmost 6279 nutrients involved in ?
(c(Q181394),P682,c(Q1190554))
action count
action atmost
action find_reverse_tuple_counts
relation P682
type Q1190554
type Q181394
value 6279
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1190554'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?n ) WHERE { { SELECT DISTINCT ?y ( COUNT ( ?z ) AS ?x ) WHERE { ?z property:P682 ?y . ?z rdf:type ontology:Q181394 . ?y rdf:type ontology:Q1190554 } GROUP BY ?y } . FILTER ( ?x <= 6279 ) }
action count
action atmost
action find_reverse_tuple_counts
relation biological process
type event
type nutrient
value 6279
[{'concept': 'nutrient'}, 'biological process', {'concept': 'event'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?n ) WHERE { { SELECT DISTINCT ?y ( COUNT ( ?z ) AS ?x ) WHERE { ?z property:biological_process ?y . ?z rdf:type ontology:nutrient . ?y rdf:type ontology:event } GROUP BY ?y } . FILTER ( ?x <= 6279 ) }
[]
event nutrient
SYSTEM
2
Q719426 Q2996394
(c(Q181394),P682,c(Q1190554))
action count
action atmost
action find_reverse_tuple_counts
relation P682
type Q1190554
type Q181394
value 6279
[ANSWER]
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1190554'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?n ) WHERE { { SELECT DISTINCT ?y ( COUNT ( ?z ) AS ?x ) WHERE { ?z property:P682 ?y . ?z rdf:type ontology:Q181394 . ?y rdf:type ontology:Q1190554 } GROUP BY ?y } . FILTER ( ?x <= 6279 ) }
lactation biological process
2
action count
action atmost
action find_reverse_tuple_counts
relation biological process
type event
type nutrient
value 6279
[{'concept': 'nutrient'}, 'biological process', {'concept': 'event'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?n ) WHERE { { SELECT DISTINCT ?y ( COUNT ( ?z ) AS ?x ) WHERE { ?z property:biological_process ?y . ?z rdf:type ontology:nutrient . ?y rdf:type ontology:event } GROUP BY ?y } . FILTER ( ?x <= 6279 ) }
[]