Simple Question (Direct)
Simple Question
Q23492766
P702
Q863908
USER
What is the gene that encodes aspartyl/glutamyl-tRNA amidotransferase subunit B    SAG1667 ?
(Q23492766,P702,c(Q863908))
action filter_type
action find
entity Q23492766
relation P702
type Q863908
['Q23492766', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?j WHERE { resource:Q23492766 property:P702 ?j . ?j rdf:type ontology:Q863908 }
aspartyl/glutamyl-tRNA amidotransferase subunit B    SAG1667
action filter_type
action find
entity aspartyl/glutamyl-tRNA amidotransferase subunit B    SAG1667
relation encoded by
type nucleic acid sequence
['aspartyl/glutamyl-tRNA amidotransferase subunit B    SAG1667', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?j WHERE { resource:aspartyl/glutamyl-tRNA_amidotransferase_subunit_B____SAG1667 property:encoded_by ?j . ?j rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23222433
SYSTEM
aspartyl/glutamyl-tRNA amidotransferase subunit B    SAG1667
Q23222433
(Q23492766,P702,c(Q863908))
action filter_type
action find
entity Q23492766
relation P702
type Q863908
The gene that encodes aspartyl / glutamyl-tRNA amidotransferase subunit B SAG1667 is codes aspartyl/glutamyl-tRNA amidotransferase subunit B SAG1667
['Q23492766', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?j WHERE { resource:Q23492766 property:P702 ?j . ?j rdf:type ontology:Q863908 }
aspartyl/glutamyl-tRNA amidotransferase subunit B    SAG1667
The gene that encodes aspartyl / glutamyl-tRNA amidotransferase subunit B SAG1667 is codes aspartyl/glutamyl-tRNA amidotransferase subunit B SAG1667
aspartyl/glutamyl-tRNA amidotransferase subunit B    SAG1667
action filter_type
action find
entity aspartyl/glutamyl-tRNA amidotransferase subunit B    SAG1667
relation encoded by
type nucleic acid sequence
['aspartyl/glutamyl-tRNA amidotransferase subunit B    SAG1667', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?j WHERE { resource:aspartyl/glutamyl-tRNA_amidotransferase_subunit_B____SAG1667 property:encoded_by ?j . ?j rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23492766
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(c(Q863908),P688,Q23222433)
action filter_type
action find_reverse
entity Q23492766
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q23222433']
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:Q863908 . ?b property:P688 resource:Q23492766 }
aspartyl/glutamyl-tRNA amidotransferase subunit B    SAG1667
action filter_type
action find_reverse
entity aspartyl/glutamyl-tRNA amidotransferase subunit B    SAG1667
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'aspartyl/glutamyl-tRNA amidotransferase subunit B    SAG1667']
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:nucleic_acid_sequence . ?b property:encodes resource:aspartyl/glutamyl-tRNA_amidotransferase_subunit_B____SAG1667 }
[]
nucleic acid sequence
Q23222433
SYSTEM
aspartyl/glutamyl-tRNA amidotransferase subunit B    SAG1667
Q23222433
(c(Q863908),P688,Q23222433)
action filter_type
action find_reverse
entity Q23492766
relation P688
type Q863908
En aspartyl/glutamyl-tRNA amidotransferase subunit B SAG1667 encodes that nutrient
[{'concept': 'Q863908'}, 'P688', 'Q23222433']
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:Q863908 . ?b property:P688 resource:Q23492766 }
aspartyl/glutamyl-tRNA amidotransferase subunit B    SAG1667
En aspartyl/glutamyl-tRNA amidotransferase subunit B SAG1667 encodes that nutrient
aspartyl/glutamyl-tRNA amidotransferase subunit B    SAG1667
action filter_type
action find_reverse
entity aspartyl/glutamyl-tRNA amidotransferase subunit B    SAG1667
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'aspartyl/glutamyl-tRNA amidotransferase subunit B    SAG1667']
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:nucleic_acid_sequence . ?b property:encodes resource:aspartyl/glutamyl-tRNA_amidotransferase_subunit_B____SAG1667 }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q79529 Q8386 Q181394
USER
How many nutrients contact around 79 chemical substances and drugs ?
(c(Q181394),P129,c(Q79529)|c(Q8386))
action count
action approx
action union
action find_tuple_counts
relation P129
type Q181394
type Q79529
action find_tuple_counts
relation P129
type Q181394
type Q8386
value 79
[{'concept': 'Q181394'}, 'P129', [{'concept': 'Q79529'}, {'concept': 'Q8386'}]]
SELECT DISTINCT ( COUNT ( ?u ) AS ?k ) WHERE { { SELECT DISTINCT ?u ( COUNT ( ?p ) AS ?q ) WHERE { VALUES ( ?w ) { ( ontology:Q79529 ) ( ontology:Q8386 ) } . ?p rdf:type ?w } GROUP BY ?u } . FILTER ( ?q = 79 ) }
action count
action approx
action union
action find_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
action find_tuple_counts
relation physically interacts with
type nutrient
type drug
value 79
[{'concept': 'nutrient'}, 'physically interacts with', [{'concept': 'chemical substance'}, {'concept': 'drug'}]]
SELECT DISTINCT ( COUNT ( ?u ) AS ?k ) WHERE { { SELECT DISTINCT ?u ( COUNT ( ?p ) AS ?q ) WHERE { VALUES ( ?w ) { ( ontology:chemical_substance ) ( ontology:drug ) } . ?p rdf:type ?w } GROUP BY ?u } . FILTER ( ?q = 79 ) }
[]
chemical substance drug nutrient
SYSTEM
2
Q21108118 Q21115043
(c(Q181394),P129,c(Q79529)|c(Q8386))
action count
action approx
action union
action find_tuple_counts
relation P129
type Q181394
type Q79529
action find_tuple_counts
relation P129
type Q181394
type Q8386
value 79
[ANSWER]
[{'concept': 'Q181394'}, 'P129', [{'concept': 'Q79529'}, {'concept': 'Q8386'}]]
SELECT DISTINCT ( COUNT ( ?u ) AS ?k ) WHERE { { SELECT DISTINCT ?u ( COUNT ( ?p ) AS ?q ) WHERE { VALUES ( ?w ) { ( ontology:Q79529 ) ( ontology:Q8386 ) } . ?p rdf:type ?w } GROUP BY ?u } . FILTER ( ?q = 79 ) }
5-hydroxytryptamine receptor 2C 5-hydroxytryptamine receptor 1A
2
action count
action approx
action union
action find_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
action find_tuple_counts
relation physically interacts with
type nutrient
type drug
value 79
[{'concept': 'nutrient'}, 'physically interacts with', [{'concept': 'chemical substance'}, {'concept': 'drug'}]]
SELECT DISTINCT ( COUNT ( ?u ) AS ?k ) WHERE { { SELECT DISTINCT ?u ( COUNT ( ?p ) AS ?q ) WHERE { VALUES ( ?w ) { ( ontology:chemical_substance ) ( ontology:drug ) } . ?p rdf:type ?w } GROUP BY ?u } . FILTER ( ?q = 79 ) }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23164842 Q23222433
P702
Q181394
USER
Which nutrients are the gene that are encoded by aspartyl/glutamyl-tRNA amidotransferase subunit B    SAG1667 or phosphoenolpyruvate synthase    VPA0372 ?
OR((c(Q181394),P702,Q23222433), (c(Q181394),P702,Q23164842))
action filter_type
action union
action find_reverse
entity Q23222433
relation P702
action find_reverse
entity Q23164842
relation P702
type Q181394
{'OR': [[{'concept': 'Q181394'}, 'P702', 'Q23222433'], [{'concept': 'Q181394'}, 'P702', 'Q23164842']]}
SELECT DISTINCT ?a WHERE { ?a rdf:type ontology:Q181394 . { { ?a property:P702 resource:Q23222433 } UNION { ?a property:P702 resource:Q23164842 } } }
phosphoenolpyruvate synthase    VPA0372 aspartyl/glutamyl-tRNA amidotransferase subunit B    SAG1667
action filter_type
action union
action find_reverse
entity aspartyl/glutamyl-tRNA amidotransferase subunit B    SAG1667
relation encoded by
action find_reverse
entity phosphoenolpyruvate synthase    VPA0372
relation encoded by
type nutrient
{'OR': [[{'concept': 'nutrient'}, 'encoded by', 'aspartyl/glutamyl-tRNA amidotransferase subunit B    SAG1667'], [{'concept': 'nutrient'}, 'encoded by', 'phosphoenolpyruvate synthase    VPA0372']]}
SELECT DISTINCT ?a WHERE { ?a rdf:type ontology:nutrient . { { ?a property:encoded_by resource:aspartyl/glutamyl-tRNA_amidotransferase_subunit_B____SAG1667 } UNION { ?a property:encoded_by resource:phosphoenolpyruvate_synthase____VPA0372 } } }
[]
nutrient
Q23443957 Q23492766
SYSTEM
phosphoenolpyruvate synthase    VPA0372, aspartyl/glutamyl-tRNA amidotransferase subunit B    SAG1667
Q23443957 Q23492766
OR((c(Q181394),P702,Q23222433), (c(Q181394),P702,Q23164842))
action filter_type
action union
action find_reverse
entity Q23222433
relation P702
action find_reverse
entity Q23164842
relation P702
type Q181394
[ANSWERS]
{'OR': [[{'concept': 'Q181394'}, 'P702', 'Q23222433'], [{'concept': 'Q181394'}, 'P702', 'Q23164842']]}
SELECT DISTINCT ?a WHERE { ?a rdf:type ontology:Q181394 . { { ?a property:P702 resource:Q23222433 } UNION { ?a property:P702 resource:Q23164842 } } }
phosphoenolpyruvate synthase    VPA0372 aspartyl/glutamyl-tRNA amidotransferase subunit B    SAG1667
Phosphoenolpyruvate synthase VPA0372 and aspartyl/glutamyl-tRNA amidotransferase subunit B SAG1667 are the gene that are encoded by aspartyl/glutamyl-tRNA amidotransferase subunit B SAG1667 or phosphoenolpyruvate synthase VPA0372
phosphoenolpyruvate synthase    VPA0372 aspartyl/glutamyl-tRNA amidotransferase subunit B    SAG1667
action filter_type
action union
action find_reverse
entity aspartyl/glutamyl-tRNA amidotransferase subunit B    SAG1667
relation encoded by
action find_reverse
entity phosphoenolpyruvate synthase    VPA0372
relation encoded by
type nutrient
{'OR': [[{'concept': 'nutrient'}, 'encoded by', 'aspartyl/glutamyl-tRNA amidotransferase subunit B    SAG1667'], [{'concept': 'nutrient'}, 'encoded by', 'phosphoenolpyruvate synthase    VPA0372']]}
SELECT DISTINCT ?a WHERE { ?a rdf:type ontology:nutrient . { { ?a property:encoded_by resource:aspartyl/glutamyl-tRNA_amidotransferase_subunit_B____SAG1667 } UNION { ?a property:encoded_by resource:phosphoenolpyruvate_synthase____VPA0372 } } }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23443957
P703
Q631147
USER
Which taxon is phosphoenolpyruvate synthase    VPA0372 a part of ?
(Q23443957,P703,c(Q631147))
action filter_type
action find
entity Q23443957
relation P703
type Q631147
['Q23443957', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?k WHERE { resource:Q23443957 property:P703 ?k . ?k rdf:type ontology:Q631147 }
phosphoenolpyruvate synthase    VPA0372
action filter_type
action find
entity phosphoenolpyruvate synthase    VPA0372
relation found in taxon
type infraspecific name
['phosphoenolpyruvate synthase    VPA0372', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?k WHERE { resource:phosphoenolpyruvate_synthase____VPA0372 property:found_in_taxon ?k . ?k rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102947
SYSTEM
Vibrio parahaemolyticus RIMD 2210633
Q21102947
(Q23443957,P703,c(Q631147))
action filter_type
action find
entity Q23443957
relation P703
type Q631147
[ANSWER] is phosphoenolpyruvate synthase VPA0372 a part of
['Q23443957', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?k WHERE { resource:Q23443957 property:P703 ?k . ?k rdf:type ontology:Q631147 }
Vibrio parahaemolyticus RIMD 2210633
Vibrio parahaemolyticus RIMD 2210633 is phosphoenolpyruvate synthase VPA0372 a part of
Vibrio parahaemolyticus RIMD 2210633
action filter_type
action find
entity phosphoenolpyruvate synthase    VPA0372
relation found in taxon
type infraspecific name
['phosphoenolpyruvate synthase    VPA0372', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?k WHERE { resource:phosphoenolpyruvate_synthase____VPA0372 property:found_in_taxon ?k . ?k rdf:type ontology:infraspecific_name }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23443957
P680
Q44424
USER
Which the chemical bond that represents the molecular function of phosphoenolpyruvate synthase    VPA0372 ?
(Q23443957,P680,c(Q44424))
action filter_type
action find
entity Q23443957
relation P680
type Q44424
['Q23443957', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?b WHERE { resource:Q23443957 property:P680 ?b . ?b rdf:type ontology:Q44424 }
phosphoenolpyruvate synthase    VPA0372
action filter_type
action find
entity phosphoenolpyruvate synthase    VPA0372
relation molecular function
type chemical bond
['phosphoenolpyruvate synthase    VPA0372', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?b WHERE { resource:phosphoenolpyruvate_synthase____VPA0372 property:molecular_function ?b . ?b rdf:type ontology:chemical_bond }
[]
chemical bond
Q13667380
SYSTEM
metal ion binding
Q13667380
(Q23443957,P680,c(Q44424))
action filter_type
action find
entity Q23443957
relation P680
type Q44424
Represents of [ANSWER]
['Q23443957', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?b WHERE { resource:Q23443957 property:P680 ?b . ?b rdf:type ontology:Q44424 }
metal ion binding
Represents of metal ion binding
metal ion binding
action filter_type
action find
entity phosphoenolpyruvate synthase    VPA0372
relation molecular function
type chemical bond
['phosphoenolpyruvate synthase    VPA0372', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?b WHERE { resource:phosphoenolpyruvate_synthase____VPA0372 property:molecular_function ?b . ?b rdf:type ontology:chemical_bond }
[]
Logical Reasoning (All)
Logical|Intersection|Multiple_Relation
Q210538 Q13667380
P682 P680
Q181394
USER
Which nutrients have metal ion binding as their molecular function and are involved in the biologicail process DNA repair ?
AND((c(Q181394),P680,Q13667380), (c(Q181394),P682,Q210538))
action filter_type
action intersection
action find_reverse
entity Q13667380
relation P680
action find_reverse
entity Q210538
relation P682
type Q181394
{'AND': [[{'concept': 'Q181394'}, 'P680', 'Q13667380'], [{'concept': 'Q181394'}, 'P682', 'Q210538']]}
SELECT DISTINCT ?w WHERE { ?w property:P680 resource:Q13667380 . ?w property:P682 resource:Q210538 . ?w rdf:type ontology:Q181394 }
DNA repair metal ion binding
action filter_type
action intersection
action find_reverse
entity metal ion binding
relation molecular function
action find_reverse
entity DNA repair
relation biological process
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'molecular function', 'metal ion binding'], [{'concept': 'nutrient'}, 'biological process', 'DNA repair']]}
SELECT DISTINCT ?w WHERE { ?w property:molecular_function resource:metal_ion_binding . ?w property:biological_process resource:DNA_repair . ?w rdf:type ontology:nutrient }
[]
nutrient
Q21989083 Q23589897 Q21981911 Q23622650 Q23536082 Q23449577 Q27742047 Q23050640 Q23603397 Q23610876
SYSTEM
Some of them are E3 ubiquitin-protein ligase RNF138, UvrABC system protein A (UvrA protein) excinuclease    MAB_2315, Eyes absent homolog 4, LigA    BL0052, formamidopyrimidine-DNA glycosylase / DNA-(apurinic or apyrimidinic site) lyase    Moth_1840, crossover junction endodeoxyribonuclease RuvC    BF3262, formamidopyrimidine-DNA glycosylase    MSMEG_2419, DNA replication and repair protein RecR    RSP_0712, Recombination protein RecR    FP1300, DNA repair protein RadA    tlr1103
Q27548373 Q23486120 Q21990300 Q23609111 Q23445447 Q23441066 Q21978787 Q23470971 Q23614173 Q23568406 Q23596433 Q24093985 Q23476256 Q23479831 Q23493174 Q21990392 Q23534493 Q21990947 Q23508165 Q21120017 Q22574876 Q23464280 Q23538276 Q21168238 Q24091702 Q23547868 Q21599512 Q27551216 Q21990541 Q21983466 Q23612457 Q24271364 Q21136663 Q24105667 Q21631212 Q21630479 Q21120728 Q21494425 Q22987698 Q22292427 Q24109314 Q27741033 Q23446867 Q21992047 Q23479579 Q27548712 Q27470957 Q23491026 Q23504389 Q21114415 Q22336292 Q27549492 Q23610847 Q21114418 Q27549495 Q23461354 Q27550675 Q21114993 Q24221928 Q23064131 Q27739258 Q14911733 Q23485184 Q23447408 Q24132588 Q21113253 Q21113255 Q23491500 Q22301576 Q21494858 Q27551330 Q23476856 Q21131526 Q23525180 Q23547916 Q21423806 Q23471836 Q27475499 Q27552824 Q23578686 Q21166986 Q24114769 Q24125626 Q21114092 Q24091845 Q23575389 Q22258971 Q23461320 Q23063755 Q23536583 Q22257969 Q23610876 Q23500411 Q21116593 Q24152183 Q14883757 Q21116601 Q23448909 Q21986835 Q27763191 Q23483834 Q23476218 Q21168194 Q22264774 Q23623573 Q23481518 Q21125075 Q22259122 Q23063576 Q27742449 Q27548129 Q23460037 Q27548552 Q23551430 Q21988000 Q21114601 Q21109589 Q14883472 Q22258123 Q21111312 Q21978138 Q27474404 Q24114182 Q23446548 Q23480998 Q24120670 Q22234444 Q24125425 Q22269907 Q23606628 Q23448464 Q22234524 Q23469418 Q24108462 Q22234933 Q23448583 Q23050453 Q14862232 Q21978413 Q21131655 Q23533903 Q23603397 Q23491579 Q23547747 Q21630504 Q23615618 Q23602578 Q27740999 Q23625346 Q21978565 Q24124972 Q23446526 Q21603821 Q23436945 Q23632188 Q23492745 Q27744522 Q22326729 Q23487591 Q23466648 Q27740109 Q24254080 Q22272513 Q23480569 Q27760622 Q23447159 Q23535925 Q27552860 Q22302025 Q23482631 Q21603899 Q21174965 Q21148777 Q21172848 Q23475044 Q21989759 Q23540006 Q27547450 Q23589897 Q22335611 Q24267120 Q21167015 Q24221818 Q23502298 Q21494748 Q21134874 Q22300446 Q27762429 Q24148515 Q21172356 Q23613429 Q21600014 Q23595876 Q22265216 Q23448889 Q23622561 Q24149747 Q21987468 Q21604205 Q23518294 Q22987448 Q21107960 Q21984080 Q21495235 Q24135869 Q22316821 Q21495230 Q21167118 Q21112143 Q27761161 Q22134935 Q23623914 Q23495925 Q21146516 Q22233608 Q22292544 Q22232583 Q21117982 Q23634919 Q426168 Q23490314 Q22271695 Q21990935 Q27761462 Q21987150 Q21990930 Q21991153 Q23544502 Q21101122 Q21115069 Q22677925 Q27747205 Q23506177 Q23616066 Q23426234 Q22990638 Q21603595 Q21981573 Q21630212 Q23469318 Q23462535 Q27740433 Q27756027 Q23473718 Q23622031 Q21101084 Q24253161 Q23446581 Q23550229 Q19596944 Q23623138 Q23473305 Q21120451 Q21173072 Q22990356 Q23623137 Q21495902 Q27547411 Q23489752 Q23446510 Q23492100 Q27550445 Q23471486 Q22301966 Q23611801 Q23500598 Q21113719 Q23569609 Q22325978 Q21986596 Q23505327 Q22160581 Q21135111 Q23605161 Q23610622 Q21112674 Q23594607 Q22293504 Q23635860 Q23482565 Q21118735 Q27759692 Q23471154 Q24095809 Q23459365 Q23537923 Q27760663 Q23489375 Q27761533 Q23539414 Q27761120 Q21115125 Q24098927 Q21756509 Q21981855 Q27742383 Q22325758 Q21498860 Q23460797 Q24133675 Q22134549 Q23469715 Q23570951 Q23425448 Q21991580 Q14912285 Q23514558 Q23622392 Q21135282 Q23488877 Q27474190 Q23451541 Q23477520 Q27763438 Q27759187 Q23596202 Q24271605 Q21105362 Q27548669 Q22264906 Q27549190 Q24252679 Q22234458 Q23491196 Q21108475 Q23449577 Q21495381 Q5420624 Q23537773 Q23525621 Q27761437 Q21496366 Q21988841 Q21988844 Q24280680 Q21136117 Q21101117 Q21991942 Q23508444 Q21599531 Q22270329 Q5011104 Q21105844 Q22135270 Q23476531 Q23450028 Q27550152 Q21116613 Q23505588 Q23505663 Q21984807 Q23503109 Q23489080 Q23621982 Q24269012 Q23548327 Q22676734 Q24151476 Q24252954 Q23502850 Q21978261 Q23569648 Q23628425 Q23605040 Q23050434 Q21978061 Q23514788 Q23471197 Q23546777 Q23471191 Q23595237 Q21633251 Q23588388 Q27550715 Q23427201 Q23604030 Q27552983 Q23462288 Q23595889 Q23448504 Q21989485 Q23050735 Q21499459 Q21499456 Q27474916 Q23550827 Q21125561 Q21632417 Q23463303 Q21101136 Q21170892 Q23625635 Q23473522 Q23602114 Q27759806 Q22989945 Q21130842 Q23514063 Q23592078 Q23482855 Q23529963 Q21114920 Q23485809 Q23460799 Q21632852 Q21494864 Q21118319 Q21982067 Q23513239 Q24226581 Q21096253 Q22291601 Q27742047 Q23552147 Q23535847 Q23475938 Q23549198 Q23432310 Q24095306 Q21499177 Q22292635 Q21118916 Q21991811 Q15311582 Q23506906 Q27547885 Q27743117 Q23595418 Q21990143 Q27760477 Q21122816 Q23463335 Q23504866 Q21497498 Q27759814 Q22574631 Q21123143 Q23603163 Q22258772 Q23507689 Q22316069 Q24094018 Q22319700 Q23489167 Q22679306 Q24249684 Q23456283 Q24092294 Q23596390 Q23551198 Q23481171 Q22233337 Q24125021 Q24109296 Q21496813 Q21108543 Q27548499 Q22266205 Q22271621 Q24252726 Q22161752 Q24253282 Q23495396 Q24100418 Q22233092 Q23485413 Q23494872 Q24254179 Q23487926 Q24268190 Q23530043 Q23490029 Q23490973 Q21599986 Q27551435 Q27547991 Q23537090 Q23424737 Q27759295 Q22991266 Q21981911 Q22325980 Q21117820 Q23516216 Q21153879 Q23611218 Q21498316 Q21498317 Q21989773 Q27552846 Q22293519 Q21498311 Q22265307 Q21977943 Q21124832 Q21631609 Q21498319 Q23489870 Q24148611 Q6591532 Q24127409 Q27547670 Q5205764 Q21986695 Q21989280 Q14874000 Q27548039 Q5205765 Q23602399 Q24125616 Q23486949 Q23427239 Q27760654 Q23446349 Q23073086 Q24100179 Q23459434 Q23452240 Q21104922 Q27547691 Q21122101 Q23596329 Q23446330 Q27551366 Q21613047 Q21989513 Q21100487 Q21985819 Q24151794 Q22291491 Q24097898 Q23485634 Q22335274 Q23458250 Q24124146 Q24115617 Q22258827 Q6719107 Q24127016 Q27551092 Q27547359 Q21986604 Q24150221 Q21991599 Q22677296 Q21154944 Q23485561 Q27761327 Q23448794 Q24121942 Q21127053 Q24135395 Q23597954 Q27549261 Q21496334 Q23486448 Q21202226 Q22326524 Q23545262 Q21101278 Q21123820 Q21631943 Q24135892 Q27745340 Q23481984 Q23478023 Q21207657 Q23444957 Q27552082 Q17487737 Q27552087 Q21137455 Q21127086 Q21599503 Q21991952 Q21117980 Q23429259 Q21426895 Q23495707 Q27550414 Q23585435 Q21494430 Q23571833 Q27550144 Q23489135 Q27741021 Q23604136 Q21168529 Q23616019 Q23516107 Q21756491 Q21123441 Q23544000 Q22271715 Q21173118 Q21135006 Q23481847 Q21989737 Q22923329 Q27762244 Q23494979 Q23488218 Q23493339 Q24128512 Q14908100 Q21110060 Q21481364 Q511968 Q21986418 Q23461345 Q21495842 Q21981256 Q23493488 Q23460843 Q23063883 Q21496333 Q23585327 Q22301735 Q21985779 Q23495155 Q21981096 Q21980151 Q24120245 Q21989083 Q21987319 Q21497519 Q23582804 Q21117504 Q23605775 Q21631490 Q23548755 Q23599471 Q23449590 Q21121757 Q21135780 Q23479993 Q23536082 Q23050640 Q21493997 Q22300863 Q23538113 Q21132089 Q27739542 Q23428728 Q23501697 Q21100456 Q23632387 Q22335561 Q23492839 Q21991312 Q27547642 Q23477164 Q22989772 Q587961 Q21101325 Q22676916 Q23596259 Q27551037 Q23616748 Q27552964 Q21989460 Q23548903 Q23470772 Q21172899 Q21984123 Q24094795 Q21981875 Q23494579 Q21978850 Q27547891 Q23425464 Q23054177 Q24105765 Q23488774 Q23629433 Q22335219 Q24135283 Q23506908 Q23614097 Q23522364 Q23571247 Q21111309 Q23475568 Q21102214 Q21495313 Q24111659 Q23480589 Q22325926 Q24249696 Q24282163 Q23596385 Q23446855 Q15996558 Q21989065 Q23581933 Q23573756 Q21987512 Q22987387 Q22270323 Q27551254 Q23616493 Q21100915 Q24281692 Q27550180 Q21124010 Q21173017 Q23470678 Q24121285 Q24134682 Q23529783 Q23622650 Q23064974 Q21134401 Q24253348 Q23623014 Q21992248 Q23499875 Q24280342 Q22135250 Q21105313 Q21599999 Q27760001 Q23512109 Q21632353 Q23500370 Q22334481 Q23525928 Q23593241 Q23596487 Q22325992 Q23549780 Q21100416 Q21497511 Q23436952 Q24152319 Q21599975 Q27475651 Q5427209 Q21114453 Q23502181 Q21114457 Q22258531 Q23494087 Q23591791 Q23492030 Q21172642 Q23485308 Q21133440 Q23535681 Q27762432 Q14912507 Q21174513 Q23428765 Q23451114 Q23051503 Q21498390 Q23516860 Q21112332 Q27548599 Q21112337 Q22680317 Q21981870 Q23521152 Q27759060 Q21632859 Q23520251 Q23495565 Q23423391 Q23051483 Q21114825 Q21499128 Q23551188 Q23506120 Q27749960 Q23478405 Q23519970 Q21173860 Q22266028 Q21494729 Q23494070 Q21117428 Q21495225 Q21117954 Q27741105 Q22272876 Q22575129 Q23446714
AND((c(Q181394),P680,Q13667380), (c(Q181394),P682,Q210538))
action filter_type
action intersection
action find_reverse
entity Q13667380
relation P680
action find_reverse
entity Q210538
relation P682
type Q181394
[ANSWERS]
{'AND': [[{'concept': 'Q181394'}, 'P680', 'Q13667380'], [{'concept': 'Q181394'}, 'P682', 'Q210538']]}
SELECT DISTINCT ?w WHERE { ?w property:P680 resource:Q13667380 . ?w property:P682 resource:Q210538 . ?w rdf:type ontology:Q181394 }
SCF ubiquitin ligase complex subunit HRT1 YOL133W excinuclease ABC subunit A    SSA_0448 Ubiquitin carboxyl-terminal hydrolase 3 DNA repair protein RadA    Smed_0729 exonuclease III    HI0041 excinuclease ABC subunit A    VP2712 endonuclease IV    TTHA0834 NAD-dependent DNA ligase    CT0457 recombination protein RecR    SRU_2555 DNA repair protein RadA    gvip338 hypothetical protein    aq_1006 excinuclease ABC subunit A    Psyr_4520 Holliday junction resolvasome endonuclease subunit    Pro_1147 formamidopyrimidine-DNA glycosylase    SAOUHSC_01796 Holliday junction-specific endonuclease    SAG0299 Transcription intermediary factor 1-beta DNA ligase    CD630_33090 Regulator of nonsense transcripts 1 DNA polymerase IV    L0305 Endonuclease 8-like 2 DNA repair protein RadA RADA endonuclease IV    DVU1224 formamidopyrimidine-DNA glycosylase    LBA1549 excinuclease ABC subunit A    CT_333 formamidopyrimidine-DNA glycosylase    PP_5125 formamidopyrimidine-DNA glycosylase    smi_0971 exonuclease I    BU555 Pan3p YKL025C Replication protein A 70 kDa DNA-binding subunit Aprataxin NAD-dependent DNA ligase LigA    tll0857 excinuclease ABC subunit A    KPHS_02820 DNA annealing helicase and endonuclease ZRANB3 DNA polymerase IV    NGR_c10750 DNA repair protein RadA    FTT_0873c recombination protein RecR RECR Three-prime repair exonuclease 1 Exonuclease V DNA ligase    FTT_1387c crossover junction endodeoxyribonuclease RuvC    TDE1864 formamidopyrimidine-DNA glycosylase    SMc01154 NAD-dependent DNA ligase LigA    ML1705 endonuclease III    CBU_1697 Zinc finger FYVE domain-containing protein 26 DNA polymerase IV    SAOUHSC_02111 DNA-(apurinic or apyrimidinic site) lyase APN2 YBL019W recombination protein RecR    NRG857_02235 Holliday junction-specific endonuclease    SMU_469 DNA repair protein RadA    HMPREF0351_12606 Eyes absent homolog 2 transcription regulator protein    lpg1150 SUMO-targeted ubiquitin ligase complex subunit SLX8 YER116C formamidopyrimidine-DNA glycosylase    tll1566 Eyes absent homolog 4 putative lipid phosphatase CDC1 YDR182W recombination protein RecR    DVU3200 DNA-directed RNA polymerase II core subunit RPB9 YGL070C Serine/threonine-protein phosphatase 5 DNA ligase    bll6591 endonuclease III    LA_2163 formamidopyrimidine-DNA glycosylase    Mb0969 Cyclin-dependent kinase 2 hypothetical protein    DR_0819 exonuclease    CBU_1363 Holliday junction resolvase    ECL_01435 Crossover junction endonuclease EME1 Crossover junction endonuclease MUS81 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase    SMU_1614 recombination protein RecR    Cj1263 DNA-(apurinic or apyrimidinic site) lyase SUMO ligase MMS21 YEL019C Formamidopyrimidine-DNA glycosylase    Pro_0370 Histone H4 transcription factor NAD-dependent DNA ligase LigA    CA_C2673 DNA repair protein    smi_0028 Fanconi anemia group J protein homolog excinuclease ABC subunit A    CT1689 formamidopyrimidine-DNA glycosylase    SDY_4065 E3 ubiquitin-protein ligase RAD18 YCR066W DNA ligase    AMED_1669 crossover junction endodeoxyribonuclease RuvC    CT_502 DNA-damage-inducible protein p    BN112_0895 excinuclease ABC subunit    BP3240 Centrin-2 DNA repair protein RadA    Psyr_4275 formamidopyrimidine-DNA glycosylase    AMED_0130 DNA-damage-inducible protein    LBA0414 formamidopyrimidine-DNA glycosylase    DVU3256 recombination protein RecR    LA_4333 DNA-(apurinic or apyrimidinic site) lyase / endonuclease III    Moth_1891 excinuclease subunit A    LBA0689 DNA repair protein RadA    tlr1103 exonuclease RexB    EF1112 DNA ligase 4 DNA polymerase IV    NRG857_01260 Werner syndrome ATP-dependent helicase homolog Aprataxin and PNK-like factor NAD-dependent DNA ligase LigA    RP720 Serine/threonine-protein kinase SMG1 endonuclease V    TM1865 DNA repair protein RadA    DR_1105 Recombinational DNA repair protein    Pro_1098 endonuclease IV    CT_625 DNA polymerase IV    NGO0738 crossover junction endodeoxyribonuclease RuvC    PSPTO_3979 Holliday junction-specific endonuclease    SE1137 RPA-interacting protein DNA ligase    LBA0529 NAD dependent DNA ligase    LA_4119 endonuclease IV    MSMEG_1383 ssDNA-dependent ATPase MGS1 YNL218W Holliday junction resolvase    FN0214 DNA-(apurinic or apyrimidinic site) lyase APN1 YKL114C DNA repair protein RadA    THEYE_A1557 E3 ubiquitin-protein ligase RNF8 Flap endonuclease GEN homolog 1 Replication protein A 70 kDa DNA-binding subunit Adenine DNA glycosylase DNA repair protein RadA    LBA0346 DNA oxidative demethylase ALKBH2 DNA repair protein RadA    TTHA0541 deoxyinosine 3'endoduclease    SDY_3728 formamidopyrimidine-DNA glycosylase    NMB1295 A/G-specific adenine glycosylase    HI0759 recombination protein RecR    SE2305 formamidopyrimidine-DNA glycosylase    BN117_0843 endonuclease VIII    Rv3297 formamidopyrimidine-DNA glycosylase    BP3129 Holliday junction resolvase    NMB1419 DNA polymerase IV    Smed_0923 excinuclease ABC subunit A    RP835 crossover junction endodeoxyribonuclease RuvC    Rv2594c DNA polymerase IV    Rru_A3530 NAD-dependent DNA ligase LigA    SMc01878 DNA ligase A    Rv3014c DNA repair protein RadA    RP546 DNA-(apurinic or apyrimidinic site) lyase    RSP_1339 Breast cancer type 1 susceptibility protein homolog hypothetical protein    TTHB071 Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 crossover junction endodeoxyribonuclease RuvC    CD630_28070 Recombination protein RecR    FP1300 excinuclease ABC subunit A    SMU_1851 DNA-damage-inducible protein P    smi_1816 DNA excision repair protein subunit A    FTT_1312c NAD-dependent DNA ligase    SRU_0888 DNA repair protein RadA    FP0104 excinuclease ABC subunit A    ML1392 endonuclease III    PSPTO_4149 endonuclease V    TTHA1347 endonuclease III    BP3578 recombination protein RecR    HI0443 endonuclease III    BB_0745 endonuclease IV    VF_2114 excinuclease ABC subunit A    RB10876 formamidopyrimidine-DNA glycosylase    SAG1489 endonuclease VIII    MSMEG_1756 excision endonuclease subunit UvrA    HMPREF0421_20801 endonuclease III    SSA_1711 formamidopyrimidine-DNA glycosylase    Rru_A3799 recombination protein RecR    ML2329 recombination protein RecR    lmo2702 endonuclease III    NMB0533 formamidopyrimidine-DNA glycosylase    SE1366 excinuclease ABC subunit A    MPN619 Holliday junction resolvase    CBU_1567 DNA polymerase IV    Moth_1229 DNA helicase RAD5 YLR032W Holliday junction resolvase    Cj1731c endonuclease III    SE0381 exodeoxyribonuclease V subunit beta    BB_0633 Ubiquitin carboxyl-terminal hydrolase 3 GTF2H2C protein NAD-dependent DNA ligase LigA    CTL0401 DNA ligase    Caur_0241 DNA annealing helicase and endonuclease ZRANB3 endonuclease III    lp_3241 Smc5-Smc6 complex subunit NSE1 YLR007W UvrABC system protein A (UvrA protein) excinuclease    MAB_2315 Holliday junction resolvase    lpg1287 DNA polymerase IV    KPHS_09730 recombination protein RecR    CT_240 uvrA    blr8051 endonuclease III    EF1155 7,8-dihydro-8-oxoguanine triphosphatase Serine/threonine-protein kinase SMG1 endonuclease III    Cj0595c DNA repair protein RadA    TM0199 exonuclease V subunit beta    ECUMN_3147 endonuclease III    CTL0066 endonuclease V    SRU_2800 exodeoxyribonuclease V    BU454 endonuclease III    aq_496 exodeoxyribonuclease V subunit beta    NGO0370 Holliday junction resolvase    RP119 endonuclease IV    BL0757 endonuclease IV    ECUMN_2495 E3 ubiquitin-protein ligase RBX1 excinuclease ABC subunit A    BB_0837 DNA repair protein UvrX    BSU18940 formamidopyrimidine-DNA glycosylase    FTT_0693c Non-structural maintenance of chromosomes element 1 homolog E3 ubiquitin-protein ligase HERC2 DNA ligase 4 DNA polymerase IV    ECL_01065 recombination protein RecR    PP_4267 DNA ligase 3 DNA repair protein RadA    CT_298 DNA polymerase iota endonuclease IV    Mfl333 NAD-dependent DNA ligase LigA    ECIAI39_2556 exodeoxyribonuclease I    PSPTO_4316 formamidopyrimidine-DNA glycosylase    spr0872 BRCA1 protein DNA repair protein RadA    Rv3585 excinuclease ABC subunit A    TDE1010 exonuclease V subunit beta RecB    Rv0630c DNA polymerase epsilon catalytic subunit A endonuclease III    RB5097 TFIIH basal transcription factor complex helicase XPD subunit endonuclease III (DNA repair)    SMU_1650 recombination protein RecR    NMB1237 E3 ubiquitin-protein ligase RAD18 recombination protein    Mfl677 DNA/RNA-binding protein KIN17 DNA repair protein RAD50 E3 ubiquitin-protein ligase SHPRH DNA repair protein RadA    BMA1574 DNA polymerase zeta catalytic subunit E3 ubiquitin-protein ligase FANCL DNA polymerase eta exodeoxyribonuclease V subunit beta    MSMEG_1327 recombination protein RecU    HMPREF0351_11324 DNA repair protein RadA    SRU_2500 endonuclease III    YE1987 recombination protein RecR    PA1534 DNA ligase    BB_0552 E3 ubiquitin-protein ligase FANCL exodeoxyribonuclease V subunit beta    FTT_1394c RecR protein    Rru_A3471 DNA repair protein RadA    DVU1590 Holliday junction resolvase    ML0481 DNA ligase    SCO7522 DNA repair protein RadA    Caur_0447 endonuclease III    BL1081 ATPase WRNIP1 Holliday junction-specific endonuclease    lmo1891 Holliday junction resolvase    HI0314 excinuclease ABC subunit A    THEYE_A1461 DNA polymerase alpha catalytic subunit nth    BL0393 excinuclease ABC subunit A    Caur_1688 DNA polymerase kappa DNA repair protein RadA    CTL0550 multifunctional non-homologous end joining protein LigD    PA2138 ruvC    BL0727 INO80 complex subunit B bifunctional N-glycosylase/AP lyase NTG2 YOL043C HhH-GPD superfamily base excision DNA repair protein    SSUBM407_0189 endonuclease III    HI1689 NAD-dependent DNA ligase LigA    SMU_1543 replication factor A subunit protein RFA1 YAR007C endonuclease IV    CT0316 endonuclease III    Cj1083c recombination protein RecR    tll2204 endonuclease IV    EF1736 NAD-dependent protein deacetylase sirtuin-1 excinuclease ABC subunit A    gvip553 NAD(+) kinase    HMPREF0421_21294 Endonuclease 8-like 2 DNA-(apurinic or apyrimidinic site) lyase    HMPREF0351_11321 DNA repair protein RadA    ECIAI39_4921 Three prime repair exonuclease 2 NAD-dependent DNA ligase LigA    Smed_2070 endonuclease III    tll1641 Poly [ADP-ribose] polymerase 1 DNA ligase    BDGL_000070 DNA polymerase IV    TDE0963 formamidopyrimidine-DNA glycosylase    RB12746 ATP-dependent nuclease subunit B    SE0663 Methylated-DNA--protein-cysteine methyltransferase DNA repair protein RecR    MSC_0047 excinuclease ABC subunit A    CT0527 recombination protein RecR    Psyr_3396 recombination protein RecR    FN0412 DNA-3-methyladenine glycosylase III    Moth_1560 DNA ligase    MPN357 DNA repair protein RadA    SSUBM407_1891 recombination protein U    Mfl203 DNA repair protein RadA    lp_0606 formamidopyrimidine-DNA glycosylase    Mfl581 7,8-dihydro-8-oxoguanine triphosphatase endonuclease V    XCC2713 formamidopyrimidine-DNA glycosylase    TTHA1806 Eyes absent homolog 2 DNA polymerase IV    MSMEG_1014 NAD-dependent DNA ligase LigA    HMPREF0421_20836 26S proteasome non-ATPase regulatory subunit 14 endonuclease III    FN0057 excision nuclease subunit A    ECL_00316 DNA polymerase IV    ECIAI39_0418 exodeoxyribonuclease V subunit beta    CT1069 formamidopyrimidine-DNA glycosylase    gvip464 NAD-dependent DNA ligase LigA    YE1211 DNA repair protein complementing XP-A cells homolog Serine/threonine-protein kinase Chk2 DNA ligase    BSU06620 recR    BL0499 DNA repair protein REV1 endonuclease III    SSUBM407_1075 DNA repair protein RadA    SDY_4650 excinuclease ABC subunit A    BF3320 Excinuclease ATPase subunit    Pro_1881 excinuclease ABC subunit A    TM0480 DNA ligase    MSC_0764 deoxyribonuclease IV    aq_1629 DNA repair protein RadA    KPHS_06970 DNA repair protein RAD50 Rad2 family nuclease EXO1 YOR033C DNA repair protein RadA    NGO0367 Rev3p YPL167C endonuclease III (DNA repair)    lmo1894 DNA polymerase IV 2    Rv3056 DNA polymerase IV    SMU_403 E3 ubiquitin-protein ligase UBR5 crossover junction endodeoxyribonuclease RuvC    BF3262 Aprataxin and PNK-like factor Exonuclease 1 NAD-dependent DNA ligase    Moth_2013 ATP-dependent exonuclease synthesis protein AddB    CA_C2263 repair endonuclease subunit A    Mfl059 Fanconi-associated nuclease 1 E3 SUMO-protein ligase NSE2 Non-structural maintenance of chromosomes element 1 homolog formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase    O3K_00665 Structure-specific endonuclease subunit SLX1 E3 ubiquitin-protein ligase UHRF1 E3 ubiquitin-protein ligase UBR5 endonuclease III    L0253 DNA ligase    BU067 DNA ligase    NMB0666 Serine/threonine-protein kinase Chk2 General transcription factor IIH subunit 2-like protein exonuclease I    ECIAI39_1005 contains ATPase and Zn-ribbon domains    Pro_0155 endonuclease III    BF3268 DNA-directed DNA polymerase IV YCR014C DNA-(apurinic or apyrimidinic site) lyase 2 DNA ligase (NAD(+))    HMPREF0351_11608 DNA-directed DNA polymerase IV    HMPREF0351_10745 Endonuclease V recombination protein RecR    HMPREF0351_10738 NAD-dependent DNA ligase LigA    SSUBM407_0764 uvrA    BL0702 endonuclease V    KPHS_02170 endonuclease III (DNA repair), DNA-(apurinic or apyrimidinic site) lyase    smi_1237 DNA-(apurinic or apyrimidinic site) lyase endonuclease III    NRG857_08180 ATP-dependent deoxyribonuclease subunit B    lmo2268 deoxyribonuclease IV (phage-T(4)-induced)    HMPREF0351_12000 excinuclease ABC subunit A    TTHA1440 endonuclease V    glr4243 DNA repair protein RadA    PSPTO_4640 excinuclease ABC subunit A    Smed_1235 DNA ligase    RSP_2622 DNA ligase    TTHA1097 ATP-dependent DNA ligase YkoU    BSU13400 DNA repair protein RadA    CT1195 excinuclease ABC subunit A    BMAA0062 Holliday junction resolvase    CT1664 endonuclease III    aq_172 NAD-dependent DNA ligase LigA    HP0615 Probable DNA repair protein RadA    MAB_0564c Mus81p YDR386W formamidopyrimidine-DNA glycosylase    YE0066 Crossover junction endoribonuclease    FP0209 DNA polymerase epsilon catalytic subunit YNL262W excinuclease ABC subunit A    DVU1987 hypothetical protein    aq_548 recombination protein RecR    RP438 40S ribosomal protein S27-like Holliday junction endonuclease RuvC    RSP_0556 Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 DNA oxidative demethylase ALKBH2 excinuclease ABC subunit A    SDY_4509 endonuclease III    THEYE_A0693 Ubiquitin carboxyl-terminal hydrolase 45 DNA repair protein RadA    HP0223 Holliday junction resolvase    DVU2258 DNA-directed DNA/RNA polymerase mu Zinc finger and BTB domain-containing protein 1 DNA polymerase IV    PSPTO_3990 formamidopyrimidine-DNA glycosylase    Caur_1873 Excinuclease ABC, A subunit UvrA1    FP1107 DNA polymerase IV    MSC_0549 crossover junction endodeoxyribonuclease RuvC    PA0965 40S ribosomal protein S27-like formamidopyrimidine-DNA glycosylase    BC4586 DNA polymerase IV, devoid of proofreading, damage-inducible protein P    BDGL_003109 excinuclease ABC subunit A    SE0542 endonuclease III    CLC_0265 CDK-activating kinase assembly factor MAT1 excinuclease ABC subunit A    DR_1771 excinuclease ABC subunit A    FN1103 endonuclease III    HP0585 DNA-(apurinic or apyrimidinic site) lyase 2 E3 ubiquitin-protein ligase RNF8 Flap endonuclease GEN homolog 1 excinuclease ABC subunit A    BC5167 recombination protein RecR    bll8114 Transcriptional repressor protein YY1 endonuclease III    TDE2534 formamidopyrimidine-DNA glycosylase    MSMEG_2419 excinuclease ABC subunit A    BPSS0058 endonuclease IV    Moth_1124 Endonuclease III    Pro_0880 recombination protein U    smi_1756 formamidopyrimidine-DNA glycosylase    AHA_0164 methylated-DNA-[protein]-cysteine S-methyltransferase    Psyr_3365 Poly [ADP-ribose] polymerase 1 DNA repair protein RadA    TDE2517 Ribonucleoside-diphosphate reductase subunit M2 B General transcription factor IIH subunit 3 5'-3' exoribonuclease 2 excinuclease ABC subunit A    L0256 multifunctional nuclease RAD27 YKL113C NAD-dependent DNA ligase LigA    MSMEG_2362 ATP-dependent DNA ligase    aq_1394 Structure-specific endonuclease subunit SLX1 endonuclease IV    MPN328 DNA-binding protein SMUBP-2 NAD-dependent DNA ligase    DVU1608 excision endonuclease subunit UvrA    HMPREF0351_11644 DNA polymerase alpha catalytic subunit formamidopyrimidine-DNA glycosylase    MSC_0682 Holliday junction resolvase    YPO2056 Endonuclease III-like protein 1 Excinuclease ABC, A subunit UvrA2    FP0849 endonuclease III    LBA1160 DNA repair protein RadA    L0303 DNA repair enzyme    PP_4644 exonuclease I    Psyr_4020 DNA ligase    PP_4274 excinuclease ABC subunit A    SSUBM407_1698 Endonuclease V formamidopyrimidine-DNA glycosylase    lmo1564 endonuclease IV    BT_4651 formamidopyrimidine-DNA glycosylase    Psyr_4761 excinuclease ABC subunit A    aq_686 DNA ligase, NAD-dependent    THEYE_A2000 endonuclease IV    SE1244 endonuclease III    Rv3674c excinuclease ABC subunit A    BP3660 excinuclease ABC subunit A    SMc01235 E3 ubiquitin-protein ligase RFWD3 26S proteasome non-ATPase regulatory subunit 14 DNA ligase (ATP) CDC9 YDL164C DNA ligase    NGO0235 DNA repair protein RadA    NMB0782 DNA polymerase IV    lmo1975 endonuclease III    ECIAI39_1423 excinuclease ABC subunit A    lmo2488 recombination protein RecR    spr1516 Holliday junction resolvase    XCC3026 recombination protein RecR    Rv3715c endonuclease III    DR_2438 Holliday junction-specific endonuclease    spr0330 endonuclease IV    lmo1449 formamidopyrimidine-DNA glycosylase    SSA_1607 recombination protein RecR    KPHS_12000 ATP-dependent nuclease subunit B    CLC_0492 DNA polymerase IV    SSUBM407_0185 recombination protein RecR    SMU_598 endonuclease III    BU119 8-oxo-dGTP diphosphatase YLR151C MRX complex DNA-binding subunit YNL250W crossover junction endodeoxyribonuclease RuvC    Moth_1702 bifunctional regulatory protein/DNA repair protein    YE0084 endonuclease IV    MSC_0105 Chi activated ATP-dependent DNA helicase/dsDNA/ssDNA exonuclease    PP_4673 Eyes absent homolog 4 endonuclease III    HMPREF0421_21321 DNA ligase 1 A/G-specific adenine glycosylase    BSU08630 endonuclease III    CT_697 Holliday junction resolvase    tlr1137 DNA polymerase zeta catalytic subunit DNA polymerase eta Zinc finger SWIM domain-containing protein 7 histone acetyltransferase YNG2 YHR090C recombination protein RecR    TDE1549 DNA replication ATP-dependent helicase/nuclease DNA2 recombination protein RecR    NGO0767 DNA polymerase beta family protein    TTHA1150 Endonuclease 8-like 3 DNA ligase LIGN DNA polymerase beta formamidopyrimidine-DNA glycosylase    SSUBM407_0565 NAD-dependent DNA ligase LigA    ECUMN_2733 Werner syndrome ATP-dependent helicase exonuclease V subunit beta    EAE_02100 bifunctional ATP-dependent DNA helicase/ssDNA endodeoxyribonuclease DNA2 YHR164C DNA polymerase lambda DNA polymerase iota E3 ubiquitin-protein ligase UHRF1 Tyrosine-protein kinase ABL1 Eco1p YFR027W DNA polymerase beta DNA ligase (NAD+)    FP1847 Ccrossover junction endodeoxyribonuclease RuvC    BP3417 DNA polymerase IV    SSA_0343 DNA repair protein RadA    YE0579 formamidopyrimidine-DNA glycosylase    MPN380 DNA-3-methyladenine glycosylase    HI0654 formamidopyrimidine-DNA glycosylase    NGO0610 formamidopyrimidine-DNA glycosylase    XCC4147 DNA polymerase IV    FN1199 excinuclease ABC subunit A    BF2612 Regulator of nonsense transcripts 1 TFIIH/NER complex ATP-dependent 5'-3' DNA helicase subunit RAD3 YER171W SprT-like domain-containing protein Spartan DNA repair protein RadA    aq_552 excinuclease ABC subunit A    HI0249 TFIIH/NER complex subunit TFB4 YPR056W excinuclease ABC subunit A    Cj0342c Transcriptional repressor protein YY1 Fanconi anemia group J protein Crossover junction endonuclease MUS81 Holliday junction resolvase    NRG857_09340 NAD-dependent DNA ligase    TDE1538 exodeoxyribonuclease V subunit beta    XCC4199 DNA helicase RecQ    DR_1289 endonuclease III    lpg2880 DNA damage-inducible protein    BT_4409 DNA ligase    BP3560 DNA repair protein    BN112_1068 recombination protein RecR    LBA0379 Adenine DNA glycosylase DNA repair protein RadA    EAE_10615 type 2A-related serine/threonine-protein phosphatase SIT4 YDL047W DNA repair protein RAD16 YBR114W Endonuclease 8-like 3 bifunctional DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase    ECUMN_2549 Regulator of telomere elongation helicase 1 Exonuclease V Flap endonuclease 1 endonuclease III    DR_0928 DNA ligase, polydeoxyribonucleotide synthase NAD+    Mfl160 endonuclease III (nth)    RP746 crossover junction endodeoxyribonuclease    BN117_1098 E3 ubiquitin-protein ligase RNF168 endonuclease V    ECL_00259 excinuclease ABC A subunit UvrA    SO_4030 DNA ligase (ATP) DNL4 YOR005C DNA polymerase kappa NAD-dependent DNA ligase LigA    SSA_1484 Regulator of telomere elongation helicase 1 DNA repair protein RadA    HMPREF0421_20383 exodeoxyribonuclease V subunit beta    BMA1769 Fanconi anemia core complex-associated protein 20 E3 ubiquitin-protein ligase RFWD3 excinuclease ABC subunit A    HP0705 recombination protein RecR    ECL_01243 DNA polymerase IV    MSMEG_2294 endonuclease-like protein    SE1140 endonuclease IV    SAOUHSC_01658 General transcription factor IIH subunit 2 NAD-dependent DNA ligase LigA    HI1100 deoxycytidyl transferase YOR346W Breast cancer type 1 susceptibility protein Rad14p YMR201C DNA-(apurinic or apyrimidinic site) lyase E3 ubiquitin-protein ligase RNF138 8-oxo-dGTP diphosphatase    BU202 Ubiquitin carboxyl-terminal hydrolase 45 DNA polymerase delta catalytic subunit NAD-dependent DNA ligase    AHA_1229 DNA repair protein complementing XP-G cells homolog NAD-dependent DNA ligase LigA    spr1024 nucleoside diphosphate kinase YKL067W endonuclease III-like protein    GSU3377 Exonuclease 1 recombination protein    gvip475 exodeoxyribonuclease DIN7 YDR263C recombination protein RecR    SSUBM407_0604 formamidopyrimidine-DNA glycosylase    ML1658 DNA-(apurinic or apyrimidinic site) lyase    FP1101 exodeoxyribonuclease V subunit beta    CT_639 DNA polymerase IV    SRU_1539 UV-damage repair protein UvrX    BSU21500 Holliday junction resolvase RuvC    TTHA1090 Zinc finger SWIM domain-containing protein 7 excinuclease ABC subunit A    BMA3095 DNA polymerase IV    NMB1448 crossover junction endodeoxyribonuclease RuvC    CTL0764 E3 ubiquitin-protein ligase RAD18 DNA repair protein RadA    SE0288 Zinc finger and BTB domain-containing protein 1 8-oxo-dGTP diphosphatase    Rv0413 endonuclease III    TM0366 excinuclease ABC subunit A    spr0171 recombination protein RecR    SSA_0690 NAD-dependent DNA ligase LigA    SAG0850 DNA polymerase IV    EAE_11930 TFIIH basal transcription factor complex helicase XPD subunit E3 ubiquitin-protein ligase DTX3L DNA demethylase ALKBH1 Cyclin-dependent kinase 2 RPA-interacting protein HhH-GPD family DNA repair protein    DVU2338 Histone H4 transcription factor Centrin-2 excinuclease ABC subunit A    SAG1709 DNA repair protein RadA    FN0157 excinuclease ABC subunit A    LA_2212 DNA-directed DNA/RNA polymerase mu excinuclease ABC subunit A    GSU3325 DNA ligase    Cj0586 Methylated-DNA--protein-cysteine methyltransferase endonuclease III    spr1157 Fanconi anemia core complex-associated protein 20 Ribonucleoside-diphosphate reductase subunit M2 B excinuclease ABC subunit A    BN117_0075 E3 ubiquitin-protein ligase RNF138 Endonuclease III-like protein 1 E3 ubiquitin-protein ligase DTX3L excinuclease ABC family protein    GSU2758 DNA replication ATP-dependent helicase/nuclease DNA2 methylated-DNA--protein-cysteine methyltransferase    Smed_0073 exodeoxyribonuclease I    FTT_1200c recombination protein    smi_0614 formamidopyrimidine-DNA glycosylase MutM    SO_4726 recombination protein RecR    BF2053 E3 SUMO-protein ligase NSE2 General transcription factor IIH subunit 3 Holliday junction-specific endonuclease    SAOUHSC_01466 formamidopyrimidine-DNA glycosylase / DNA-(apurinic or apyrimidinic site) lyase    Moth_1840 DNA replication and repair protein RecR    RSP_0712 Lys-63-specific deubiquitinase BRCC36 DNA repair protein RadA    Cj1205c DNA repair protein RadA    Moth_2490 INO80 complex subunit B endonuclease IV    ML1889 Holliday junction resolvase    AHA_1301 recombination protein RecR    EF2766 Lys-63-specific deubiquitinase BRCC36 exinuclease ABC subunit A    RB7959 recombination protein RecR    lpg2756 endonuclease III    SAG0468 Three prime repair exonuclease 2 endonuclease YBR228W NAD-dependent DNA ligase    Pro_1841 DNA repair protein RadA    PA4609 Tyrosine-protein kinase ABL1 Fanconi-associated nuclease 1 General transcription factor IIH subunit 2 recombination protein RecR    aq_1478 NAD-dependent histone deacetylase SIR2 YDL042C Holliday junction resolvase    SRU_2668 ssDNA endodeoxyribonuclease RAD2 YGR258C DNA repair protein REV1 DNA ligase    smi_1169 endonuclease III    CT1710 excinuclease ABC subunit A    CTL0587 BRCA1-associated RING domain protein 1 endonuclease III/Nth    Psyr_3888 Eyes absent homolog 1 exodeoxyribonuclease    spr1660 recombination protein RecR    TTHA1600 Mms4p YBR098W endonuclease IV    YE1455 DNA replication and repair protein RadA    RSP_2456 DNA repair protein RadA    NGR_c08770 Holliday junction-specific endonuclease    SSUBM407_0360 DNA ligase    RB10711 DNA repair protein RadA    lpg2326 formamidopyrimidine-DNA glycosylase    ECL_00126 Holliday junction-specific endonuclease    L131245 endonuclease III    SRU_2356 formamidopyrimidine-DNA glycosylase    BT9727_4316 Holliday junction resolvase    gvip456 DNA demethylase ALKBH1 recombination protein RecR    Caur_0521 Transcription intermediary factor 1-beta Flap endonuclease 1 Holliday junction resolvase    SMc03967 DNA polymerase IV    SE1580 crossover junction endoribonuclease subunit C    HMPREF0421_20858 NAD-dependent DNA ligase LigA    lmo1758 exonuclease V subunit beta    O3K_05410 DNA ligase    aq_633 recombination protein RecR    CBU_0657 Aprataxin E3 ubiquitin-protein ligase RNF168 DNA polymerase IV    AMED_1511 formamidopyrimidine-DNA glycosylase    AMED_1798 SprT-like domain-containing protein Spartan recombination protein RecR    FTT_0809c exodeoxyribonuclease V subunit RecB    NMB0785 DNA-directed DNA polymerase eta YDR419W excinuclease ABC subunit A    SRU_2387 E3 ubiquitin-protein ligase SHPRH bifunctional DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase    O3K_08380 Pso2p YMR137C Zinc finger FYVE domain-containing protein 26 recombination protein RecR    CTL0492 recombination protein RecR    CT0806 excinuclease ABC subunit    BN117_1068 hypothetical protein    ECL_00800 recombination protein RecR    CLC_0053 LigA    BL0052 DNA repair protein RadA    LA_2916 Histone-lysine N-methyltransferase SETMAR DNA repair protein RadA    lmo0233 DNA-damage-inducible protein P    BL1565 Tyrosyl-DNA phosphodiesterase 2 Holliday junction-specific endonuclease    EF1149 endonuclease IV    O3K_08650 recombination protein RecR    ECIAI39_0199 Transcriptional regulator ATRX A/G-specific adenine glycosylase    BU552 excinuclease ABC subunit A    MSC_0943 endonuclease IV    BC4282 recombination protein RecR    HP0925 DNA-damage-inducible protein P    EF2756 DNA ligase    lpg0958 DNA repair protein RadA    CA_C3188 endonuclease III    BDGL_000307 endonuclease III    aq_282 recombination protein R    HMPREF0421_20043 crossover junction endodeoxyribonuclease RuvC    THEYE_A0661 BRCA1-associated RING domain protein 1 DNA polymerase epsilon catalytic subunit A NAD-dependent DNA ligase LigA    VF_1890 endonuclease VIII    NRG857_03190 endonuclease IV    BU137 DNA helicase; ssDNA endonuclease    SDY_3037 Alpha-ketoglutarate-dependent dioxygenase FTO Eyes absent homolog 1 recombination protein U    EF1435 Eyes absent homolog 3 Holliday junction-specific endonuclease    LBA1158 DNA polymerase IV    SAG1726 excinuclease ABC subunit A    BDGL_002761 8-oxo-dGTP diphosphatase    SMU_1455 endonuclease IV    CTL0889 DNA ligase    DR_2069 E3 ubiquitin-protein ligase HERC2 excinuclease ABC subunit A    CD630_34110 DNA ligase    TM0100 Alpha-ketoglutarate-dependent dioxygenase FTO NAD-dependent DNA ligase LigA    CT_146 DNA polymerase IV    AHA_1145 DNA ligase    BF2403 endonuclease III; DNA-(apurinic or apyrimidinic site) lyase    RSP_1031 Crossover junction endonuclease EME1 formamidopyrimidine-DNA glycosylase    BSU29080 DNA repair protein complementing XP-A cells TFIIH/NER complex subunit SSL1 YLR005W DNA repair protein complementing XP-G cells DNA polymerase lambda Eyes absent homolog 3 endonuclease IV    BT9727_4024 recombination protein U    MSC_0416 Holliday junction resolvase    HP0877 excinuclease ABC subunit A    BT9727_4844 8-oxodGTP nucleoside triphosphatase    spr1054 endonuclease V    YE0298 DNA polymerase IV    RSP_1400 DNA/RNA-binding protein KIN17 Transcriptional regulator ATRX DNA-(Apurinic or apyrimidinic site) lyase    THEYE_A1266 DNA-formamidopyrimidine glycosylase    HMPREF0351_11561 DNA glycosylase    SCO5760 endonuclease III    SAOUHSC_01469 DNA polymerase IV    BT9727_3889 Tyrosyl-DNA phosphodiesterase 2 excinuclease ABC subunit A    NGO1207 CDK-activating kinase assembly factor MAT1 recombination protein RecR    SAG0766 E3 ubiquitin-protein ligase RBX1 DNA ligase 1 DNA ligase 3 ATP-dependent DNA ligase    MSMEG_2277 excinuclease ABC subunit A    NMB0962 NAD-dependent DNA ligase LigA    YPO2989 DNA repair protein RadA    CBU_1422
DNA replication and repair protein RecR RSP 0712, Recombination protein RecR FP1300 and DNA repair protein RadA tlr1103 have metal ion binding as their molecular function and are involved in the biologicail process DNA repair
E3 ubiquitin-protein ligase RNF138 UvrABC system protein A (UvrA protein) excinuclease    MAB_2315 Eyes absent homolog 4 LigA    BL0052 formamidopyrimidine-DNA glycosylase / DNA-(apurinic or apyrimidinic site) lyase    Moth_1840 crossover junction endodeoxyribonuclease RuvC    BF3262 formamidopyrimidine-DNA glycosylase    MSMEG_2419 DNA replication and repair protein RecR    RSP_0712 Recombination protein RecR    FP1300 DNA repair protein RadA    tlr1103
action filter_type
action intersection
action find_reverse
entity metal ion binding
relation molecular function
action find_reverse
entity DNA repair
relation biological process
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'molecular function', 'metal ion binding'], [{'concept': 'nutrient'}, 'biological process', 'DNA repair']]}
SELECT DISTINCT ?w WHERE { ?w property:molecular_function resource:metal_ion_binding . ?w property:biological_process resource:DNA_repair . ?w rdf:type ontology:nutrient }
[]
Simple Question (Direct)
Simple Question|Mult. Entity|Indirect
Q21989083 Q23589897 Q21981911 Q23622650 Q23536082 Q23449577 Q27742047 Q23050640 Q23603397 Q23610876
P680
Q44424
USER
What represents the molecular function of E3 ubiquitin-protein ligase RNF138, UvrABC system protein A (UvrA protein) excinuclease    MAB_2315, Eyes absent homolog 4, LigA    BL0052, formamidopyrimidine-DNA glycosylase / DNA-(apurinic or apyrimidinic site) lyase    Moth_1840, crossover junction endodeoxyribonuclease RuvC    BF3262, formamidopyrimidine-DNA glycosylase    MSMEG_2419, DNA replication and repair protein RecR    RSP_0712, Recombination protein RecR    FP1300 and DNA repair protein RadA    tlr1103 ?
(Q21989083,P680,c(Q44424)) (Q23589897,P680,c(Q44424)) (Q21981911,P680,c(Q44424)) (Q23622650,P680,c(Q44424)) (Q23536082,P680,c(Q44424)) (Q23449577,P680,c(Q44424)) (Q27742047,P680,c(Q44424)) (Q23050640,P680,c(Q44424)) (Q23603397,P680,c(Q44424)) (Q23610876,P680,c(Q44424))
action union
action filter_type
action find
entity Q21989083
relation P680
type Q44424
action filter_type
action find
entity Q23589897
relation P680
type Q44424
action filter_type
action find
entity Q21981911
relation P680
type Q44424
action filter_type
action find
entity Q23622650
relation P680
type Q44424
action filter_type
action find
entity Q23536082
relation P680
type Q44424
action filter_type
action find
entity Q23449577
relation P680
type Q44424
action filter_type
action find
entity Q27742047
relation P680
type Q44424
action filter_type
action find
entity Q23050640
relation P680
type Q44424
action filter_type
action find
entity Q23603397
relation P680
type Q44424
action filter_type
action find
entity Q23610876
relation P680
type Q44424
['Q21989083', 'P680', {'concept': 'Q44424'}] ['Q23589897', 'P680', {'concept': 'Q44424'}] ['Q21981911', 'P680', {'concept': 'Q44424'}] ['Q23622650', 'P680', {'concept': 'Q44424'}] ['Q23536082', 'P680', {'concept': 'Q44424'}] ['Q23449577', 'P680', {'concept': 'Q44424'}] ['Q27742047', 'P680', {'concept': 'Q44424'}] ['Q23050640', 'P680', {'concept': 'Q44424'}] ['Q23603397', 'P680', {'concept': 'Q44424'}] ['Q23610876', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?n WHERE { { ?n rdf:type ontology:Q44424 . resource:Q23589897 property:P680 ?n } UNION { resource:Q21989083 property:P680 ?n . ?n rdf:type ontology:Q44424 } }
E3 ubiquitin-protein ligase RNF138 UvrABC system protein A (UvrA protein) excinuclease    MAB_2315 Eyes absent homolog 4 LigA    BL0052 formamidopyrimidine-DNA glycosylase / DNA-(apurinic or apyrimidinic site) lyase    Moth_1840 crossover junction endodeoxyribonuclease RuvC    BF3262 formamidopyrimidine-DNA glycosylase    MSMEG_2419 DNA replication and repair protein RecR    RSP_0712 Recombination protein RecR    FP1300 DNA repair protein RadA    tlr1103
action union
action filter_type
action find
entity E3 ubiquitin-protein ligase RNF138
relation molecular function
type chemical bond
action filter_type
action find
entity UvrABC system protein A (UvrA protein) excinuclease    MAB_2315
relation molecular function
type chemical bond
action filter_type
action find
entity Eyes absent homolog 4
relation molecular function
type chemical bond
action filter_type
action find
entity LigA    BL0052
relation molecular function
type chemical bond
action filter_type
action find
entity formamidopyrimidine-DNA glycosylase / DNA-(apurinic or apyrimidinic site) lyase    Moth_1840
relation molecular function
type chemical bond
action filter_type
action find
entity crossover junction endodeoxyribonuclease RuvC    BF3262
relation molecular function
type chemical bond
action filter_type
action find
entity formamidopyrimidine-DNA glycosylase    MSMEG_2419
relation molecular function
type chemical bond
action filter_type
action find
entity DNA replication and repair protein RecR    RSP_0712
relation molecular function
type chemical bond
action filter_type
action find
entity Recombination protein RecR    FP1300
relation molecular function
type chemical bond
action filter_type
action find
entity DNA repair protein RadA    tlr1103
relation molecular function
type chemical bond
['E3 ubiquitin-protein ligase RNF138', 'molecular function', {'concept': 'chemical bond'}] ['UvrABC system protein A (UvrA protein) excinuclease    MAB_2315', 'molecular function', {'concept': 'chemical bond'}] ['Eyes absent homolog 4', 'molecular function', {'concept': 'chemical bond'}] ['LigA    BL0052', 'molecular function', {'concept': 'chemical bond'}] ['formamidopyrimidine-DNA glycosylase / DNA-(apurinic or apyrimidinic site) lyase    Moth_1840', 'molecular function', {'concept': 'chemical bond'}] ['crossover junction endodeoxyribonuclease RuvC    BF3262', 'molecular function', {'concept': 'chemical bond'}] ['formamidopyrimidine-DNA glycosylase    MSMEG_2419', 'molecular function', {'concept': 'chemical bond'}] ['DNA replication and repair protein RecR    RSP_0712', 'molecular function', {'concept': 'chemical bond'}] ['Recombination protein RecR    FP1300', 'molecular function', {'concept': 'chemical bond'}] ['DNA repair protein RadA    tlr1103', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?n WHERE { { ?n rdf:type ontology:chemical_bond . resource:UvrABC_system_protein_A_(UvrA_protein)_excinuclease____MAB_2315 property:molecular_function ?n } UNION { resource:E3_ubiquitin-protein_ligase_RNF138 property:molecular_function ?n . ?n rdf:type ontology:chemical_bond } }
[]
chemical bond
Q13667380 Q14633865 Q13667380
SYSTEM
zinc ion binding for 2nd, metal ion binding for 1st, 3rd
Q13667380 Q14633865 Q13667380 Q14633865 Q13667380 Q13667380 Q13667380 Q14633865 Q13667380 Q13667380 Q14633865 Q13667380 Q13667380 Q13667380
(Q21989083,P680,c(Q44424)) (Q23589897,P680,c(Q44424)) (Q21981911,P680,c(Q44424)) (Q23622650,P680,c(Q44424)) (Q23536082,P680,c(Q44424)) (Q23449577,P680,c(Q44424)) (Q27742047,P680,c(Q44424)) (Q23050640,P680,c(Q44424)) (Q23603397,P680,c(Q44424)) (Q23610876,P680,c(Q44424))
action union
action filter_type
action find
entity Q21989083
relation P680
type Q44424
action filter_type
action find
entity Q23589897
relation P680
type Q44424
action filter_type
action find
entity Q21981911
relation P680
type Q44424
action filter_type
action find
entity Q23622650
relation P680
type Q44424
action filter_type
action find
entity Q23536082
relation P680
type Q44424
action filter_type
action find
entity Q23449577
relation P680
type Q44424
action filter_type
action find
entity Q27742047
relation P680
type Q44424
action filter_type
action find
entity Q23050640
relation P680
type Q44424
action filter_type
action find
entity Q23603397
relation P680
type Q44424
action filter_type
action find
entity Q23610876
relation P680
type Q44424
[ANSWERS]
['Q21989083', 'P680', {'concept': 'Q44424'}] ['Q23589897', 'P680', {'concept': 'Q44424'}] ['Q21981911', 'P680', {'concept': 'Q44424'}] ['Q23622650', 'P680', {'concept': 'Q44424'}] ['Q23536082', 'P680', {'concept': 'Q44424'}] ['Q23449577', 'P680', {'concept': 'Q44424'}] ['Q27742047', 'P680', {'concept': 'Q44424'}] ['Q23050640', 'P680', {'concept': 'Q44424'}] ['Q23603397', 'P680', {'concept': 'Q44424'}] ['Q23610876', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?n WHERE { { ?n rdf:type ontology:Q44424 . resource:Q23589897 property:P680 ?n } UNION { resource:Q21989083 property:P680 ?n . ?n rdf:type ontology:Q44424 } }
metal ion binding zinc ion binding metal ion binding zinc ion binding metal ion binding metal ion binding metal ion binding zinc ion binding metal ion binding metal ion binding zinc ion binding metal ion binding metal ion binding metal ion binding
Metal ion binding, zinc ion binding and metal ion binding represent the molecular function of E3 ubiquitin-protein ligase RNF138, UvrABC system protein A (UvrA protein) excinuclease MAB_2315, Eyes absent homolog 4, LigA BL0052, formamidopyrimidine-DNA glycosylase / DNA-(apurinic or apyrimidinic site) lyase Moth_1840, crossover junction endodeoxyribonuclease RuvC BF3262, formamidopyrimidine-DNA glycosylase MSMEG_2419, DNA replication and repair protein RecR RSP_0712, Recombination protein RecR FP1300 and DNA repair protein RadA tlr1103
metal ion binding zinc ion binding metal ion binding
action union
action filter_type
action find
entity E3 ubiquitin-protein ligase RNF138
relation molecular function
type chemical bond
action filter_type
action find
entity UvrABC system protein A (UvrA protein) excinuclease    MAB_2315
relation molecular function
type chemical bond
action filter_type
action find
entity Eyes absent homolog 4
relation molecular function
type chemical bond
action filter_type
action find
entity LigA    BL0052
relation molecular function
type chemical bond
action filter_type
action find
entity formamidopyrimidine-DNA glycosylase / DNA-(apurinic or apyrimidinic site) lyase    Moth_1840
relation molecular function
type chemical bond
action filter_type
action find
entity crossover junction endodeoxyribonuclease RuvC    BF3262
relation molecular function
type chemical bond
action filter_type
action find
entity formamidopyrimidine-DNA glycosylase    MSMEG_2419
relation molecular function
type chemical bond
action filter_type
action find
entity DNA replication and repair protein RecR    RSP_0712
relation molecular function
type chemical bond
action filter_type
action find
entity Recombination protein RecR    FP1300
relation molecular function
type chemical bond
action filter_type
action find
entity DNA repair protein RadA    tlr1103
relation molecular function
type chemical bond
['E3 ubiquitin-protein ligase RNF138', 'molecular function', {'concept': 'chemical bond'}] ['UvrABC system protein A (UvrA protein) excinuclease    MAB_2315', 'molecular function', {'concept': 'chemical bond'}] ['Eyes absent homolog 4', 'molecular function', {'concept': 'chemical bond'}] ['LigA    BL0052', 'molecular function', {'concept': 'chemical bond'}] ['formamidopyrimidine-DNA glycosylase / DNA-(apurinic or apyrimidinic site) lyase    Moth_1840', 'molecular function', {'concept': 'chemical bond'}] ['crossover junction endodeoxyribonuclease RuvC    BF3262', 'molecular function', {'concept': 'chemical bond'}] ['formamidopyrimidine-DNA glycosylase    MSMEG_2419', 'molecular function', {'concept': 'chemical bond'}] ['DNA replication and repair protein RecR    RSP_0712', 'molecular function', {'concept': 'chemical bond'}] ['Recombination protein RecR    FP1300', 'molecular function', {'concept': 'chemical bond'}] ['DNA repair protein RadA    tlr1103', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?n WHERE { { ?n rdf:type ontology:chemical_bond . resource:UvrABC_system_protein_A_(UvrA_protein)_excinuclease____MAB_2315 property:molecular_function ?n } UNION { resource:E3_ubiquitin-protein_ligase_RNF138 property:molecular_function ?n . ?n rdf:type ontology:chemical_bond } }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21989083
P681
Q15989253
USER
What is a component of E3 ubiquitin-protein ligase RNF138 ?
(Q21989083,P681,c(Q15989253))
action filter_type
action find
entity Q21989083
relation P681
type Q15989253
['Q21989083', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?j WHERE { resource:Q21989083 property:P681 ?j . ?j rdf:type ontology:Q15989253 }
E3 ubiquitin-protein ligase RNF138
action filter_type
action find
entity E3 ubiquitin-protein ligase RNF138
relation cell component
type part
['E3 ubiquitin-protein ligase RNF138', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?j WHERE { resource:E3_ubiquitin-protein_ligase_RNF138 property:cell_component ?j . ?j rdf:type ontology:part }
[]
part
Q40260
SYSTEM
nucleus
Q40260
(Q21989083,P681,c(Q15989253))
action filter_type
action find
entity Q21989083
relation P681
type Q15989253
A component of E3 ubiquitin-protein ligase RNF 138 is the [ANSWER]
['Q21989083', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?j WHERE { resource:Q21989083 property:P681 ?j . ?j rdf:type ontology:Q15989253 }
nucleus
A component of E3 ubiquitin-protein ligase RNF 138 is the nucleus
nucleus
action filter_type
action find
entity E3 ubiquitin-protein ligase RNF138
relation cell component
type part
['E3 ubiquitin-protein ligase RNF138', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?j WHERE { resource:E3_ubiquitin-protein_ligase_RNF138 property:cell_component ?j . ?j rdf:type ontology:part }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q23591609
Q15989253
USER
And how about hypothetical protein    BDGL_000318?
(Q23591609,P681,c(Q15989253))
action filter_type
action find
entity Q23591609
relation P681
type Q15989253
['Q23591609', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?s WHERE { resource:Q23591609 property:P681 ?s . ?s rdf:type ontology:Q15989253 }
hypothetical protein    BDGL_000318
action filter_type
action find
entity hypothetical protein    BDGL_000318
relation cell component
type part
['hypothetical protein    BDGL_000318', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?s WHERE { resource:hypothetical_protein____BDGL_000318 property:cell_component ?s . ?s rdf:type ontology:part }
[]
part
Q79899
SYSTEM
cytoplasm
Q79899
(Q23591609,P681,c(Q15989253))
action filter_type
action find
entity Q23591609
relation P681
type Q15989253
[ANSWER]
['Q23591609', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?s WHERE { resource:Q23591609 property:P681 ?s . ?s rdf:type ontology:Q15989253 }
cytoplasm
cytoplasm
action filter_type
action find
entity hypothetical protein    BDGL_000318
relation cell component
type part
['hypothetical protein    BDGL_000318', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?s WHERE { resource:hypothetical_protein____BDGL_000318 property:cell_component ?s . ?s rdf:type ontology:part }
[]
Comparative Reasoning (All)
Comparative|More/Less|Mult. entity type|Indirect
P361
Q15989253 Q15989253 Q234460
USER
Which parts are around the same number of parts or texts a portion of as that part ?
(c(Q15989253)|c(Q234460),P361,c(Q15989253))
action approx
action union
action find_reverse_tuple_counts
relation P361
type Q15989253
type Q15989253
action find_reverse_tuple_counts
relation P361
type Q15989253
type Q234460
action count
action filter_multi_types
action find_reverse
entity Q79899
relation P361
type Q15989253
type Q234460
[[{'concept': 'Q15989253'}, {'concept': 'Q234460'}], 'P361', {'concept': 'Q15989253'}]
SELECT DISTINCT ?m WHERE { FILTER ( ?c = ?u ) . { SELECT DISTINCT ( COUNT ( ?o ) AS ?u ) WHERE { ?o property:P361 resource:Q79899 . { { ?o rdf:type ontology:Q234460 } UNION { ?o rdf:type ontology:Q15989253 } } } } . { SELECT DISTINCT ?m ( COUNT ( ?g ) AS ?c ) WHERE { { ?g property:P361 ?m . ?g rdf:type ontology:Q15989253 . ?m rdf:type ontology:Q15989253 } UNION { ?g property:P361 ?m . ?m rdf:type ontology:Q15989253 . ?g rdf:type ontology:Q234460 } } GROUP BY ?m } }
action approx
action union
action find_reverse_tuple_counts
relation part of
type part
type part
action find_reverse_tuple_counts
relation part of
type part
type text
action count
action filter_multi_types
action find_reverse
entity cytoplasm
relation part of
type part
type text
[[{'concept': 'part'}, {'concept': 'text'}], 'part of', {'concept': 'part'}]
SELECT DISTINCT ?m WHERE { FILTER ( ?c = ?u ) . { SELECT DISTINCT ( COUNT ( ?o ) AS ?u ) WHERE { ?o property:part_of resource:cytoplasm . { { ?o rdf:type ontology:text } UNION { ?o rdf:type ontology:part } } } } . { SELECT DISTINCT ?m ( COUNT ( ?g ) AS ?c ) WHERE { { ?g property:part_of ?m . ?g rdf:type ontology:part . ?m rdf:type ontology:part } UNION { ?g property:part_of ?m . ?m rdf:type ontology:part . ?g rdf:type ontology:text } } GROUP BY ?m } }
[]
part part text
Q24768592 Q24768234 Q24777352
SYSTEM
Pyridoxal phosphate-dependent transferase, major region, subdomain 1, Protein kinase domain, Aldolase-type TIM barrel
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Q24774462 Q24774743 Q24773767 Q24722599 Q24726763 Q24769046 Q24770045 Q24768262 Q24784356 Q24773859 Q24722636 Q164386 Q24777208 Q189073 Q24741217 Q24771066 Q24781826 Q24785972 Q24720238 Q24782320 Q24727101 Q24724970 Q24781940 Q24771405 Q24786194 Q24776786 Q24720193 Q582062 Q24722961 Q24722214 Q908912 Q24719603 Q24726997 Q24723612 Q24784414 Q24723616 Q24766705 Q24784553 Q24725870 Q24768401 Q24774126 Q212743 Q24782926 Q24723587 Q24781383 Q24767099 Q24776423 Q24773292 Q24778142 Q24766708 Q24783132 Q24782542 Q24780980 Q24719770 Q24744682 Q24774101 Q24772519 Q24787493 Q24780339 Q24771968 Q24771841 Q24766828 Q24787976 Q24767921 Q24778418 Q24722085 Q22328948 Q22328949 Q24776648 Q24786031 Q24787334 Q24783619 Q24720602 Q24771324 Q24720536 Q24724749 Q24739547 Q189206 Q24779648 Q24778245 Q24720122 Q24769490 Q24769493 Q24785042 Q24776048 Q24788425 Q24772976 Q24770500 Q24723203 Q24726395 Q24783987 Q24724598 Q663616 Q24788168 Q24723021 Q24720250 Q22327470 Q24785277 Q24721200 Q24785546 Q24783967 Q24722525 Q24741448 Q24777512 Q24776981 Q24776625 Q24782360 Q24787696 Q24726126 Q24741722 Q24782563 Q24768704 Q24772151 Q24768036 Q24768526 Q24781930 Q24726710 Q187181 Q24783462 Q24726800 Q24776460 Q24773826 Q24784063 Q24775615 Q24776263 Q24773415 Q24773412 Q24743817 Q24738745 Q24785947 Q831709 Q24726427 Q24773558 Q24725375 Q24721243 Q24771920 Q24722954 Q24780686 Q24778289 Q24768350 Q24783670 Q24726371 Q24725178 Q24740565 Q165963 Q24773736 Q24738734 Q24783144 Q24722767 Q24781600 Q24741091 Q24779769 Q24724252 Q24778528 Q24776003 Q24776000 Q24740707 Q24779442 Q24771187 Q24772934 Q745887 Q24741153 Q24775753 Q11078 Q24774184 Q24773928 Q24720404 Q24775759 Q24724655 Q24724718 Q15807 Q24774540 Q24738540 Q24720430 Q24723806 Q24771433 Q24769358 Q24774248 Q24741924 Q24720155 Q24779344 Q40260 Q24769890 Q24782941 Q24769195 Q24725477 Q24724363 Q24739906 Q24785463 Q24770255 Q24770938 Q24775107 Q24723379 Q24722877 Q24788474 Q24784646 Q24771500 Q24739303 Q24787003 Q24739061 Q24777219 Q24727438 Q24727430 Q24768173 Q24722589 Q24785664 Q24777352 Q24783423 Q24721120 Q24783614 Q597678 Q7895 Q24777421 Q24777420 Q24722510 Q24722513 Q24726054 Q24726118 Q24745975 Q24782455 Q24726238 Q24786519 Q301897 Q24726237 Q24726980 Q24726336 Q24740528 Q24725862 Q24739169 Q24723594 Q24739460 Q24783101 Q24740291 Q24723982 Q24778016 Q24779831 Q24776356 Q24776130 Q24786358 Q24786212 Q24772293 Q24723694 Q24780736 Q24719866 Q24719863 Q24772111 Q24722640 Q24779408 Q24725340 Q24721232 Q24774628 Q24788503 Q24726526 Q24725598 Q24781753 Q24739884 Q24782775 Q24742125 Q24725815 Q24745121 Q24742121 Q24779858 Q24781087 Q24772369 Q24783210 Q24770095 Q24780101 Q24779309 Q24779095 Q24775854 Q24785745 Q24775563 Q24721343 Q24774915 Q24721344 Q24740633 Q24743658 Q24776740 Q24771982 Q24727005 Q24770459 Q24774490 Q24783071 Q24740327 Q24769556 Q24787355 Q24787293 Q24727007 Q24779127 Q24779015 Q24723934 Q24779579 Q24772792 Q24723838 Q24788687 Q24771448 Q24768234 Q24768233 Q24720964 Q24779275 Q24769632 Q24779372 Q24771548 Q24785551 Q24740641 Q24785836 Q24780171 Q24773443 Q24778481 Q24739230 Q24774402 Q24787412 Q24782007 Q24723735 Q22329250 Q24726661 Q24768049 Q24770636 Q24768510 Q24727460 Q24720364 Q24767126 Q24768696 Q24777229 Q24771991 Q24778199 Q24778057 Q24723671 Q24773423 Q24777385 Q24738630 Q24774323 Q24725668 Q24779878 Q24776319 Q24785951 Q24726382 Q24722545 Q24782301 Q24720365 Q24787824 Q24776766 Q24780911 Q24722600 Q24786953 Q24742087 Q168002 Q24742083 Q24725495 Q24768347 Q24782731 Q24726369 Q24784434 Q24777037 Q24774668 Q24777135 Q24720564 Q9404 Q24727591 Q24776406 Q24738705 Q24776405 Q24767885 Q24768285 Q24780210 Q24740064 Q24722306 Q24740066 Q24779023 Q127702 Q24771869 Q24724221 Q24721300 Q24720844 Q24739380 Q24770412 Q24740429 Q24742014 Q24769042 Q24776548 Q24773612 Q24768833 Q712378 Q24780207 Q24781705 Q24773206 Q83330 Q24746036 Q24779234 Q24740830 Q24787303 Q24780964 Q24778895 Q24771086 Q24786138 Q24727136 Q24776718 Q24721399 Q27062218 Q24771535 Q24725972 Q24779315 Q24770367 Q24726381 Q24787745 Q24785319 Q24723045 Q24720280 Q24720850 Q24768163 Q24741239 Q24775009 Q24724896 Q24773515 Q24785919 Q24772056 Q24780430 Q24781724 Q24778798 Q24723468 Q24787108 Q24774431 Q24782462 Q24776808 Q24788227 Q24768420 Q24788345 Q24781866 Q24772887 Q24778163 Q24778161 Q24726082 Q24770558 Q24771420 Q24772288 Q24772741 Q24770015 Q24721827 Q24780646 Q24780317 Q24722431 Q511450 Q24768496 Q329638 Q24724825 Q24778986 Q24723127 Q24780690 Q24724963 Q24769597 Q24788081 Q24724181 Q24726561 Q24741049 Q24775700 Q24776506 Q24777764 Q24726923 Q24787212 Q24745039 Q24768849 Q24787218 Q24745293 Q24780542 Q24767182 Q24740335 Q24783202 Q24776068 Q24739825 Q24770876 Q24721591 Q24787931 Q24776149 Q24721451 Q24724170 Q24769123 Q24775040 Q24785714 Q42244 Q24721351 Q24766899 Q24785712 Q24721355 Q426745 Q24775178 Q24767956 Q24725281 Q24723227 Q172563 Q24787447 Q24782162 Q24787360 Q24771379 Q24768800 Q22327608 Q24783708 Q24724391 Q24726175 Q45948 Q24785211 Q24773685 Q24771596 Q24740842 Q24724559 Q24779360 Q24724552 Q24772480 Q14645596 Q24720885 Q24727103 Q24771298 Q24783012 Q24770625 Q24723173 Q24740599 Q24726771 Q24786013 Q24740388 Q24726474 Q24741343 Q37017 Q24775878 Q24719835 Q24719836 Q24721577 Q24781446 Q24774139 Q24780445 Q24719936 Q24768611 Q24771027 Q24773023 Q24739854 Q24772225 Q24782831 Q47273 Q24739149 Q24726356 Q24720223 Q79899 Q24785036 Q24787181 Q24786866 Q24786239 Q24725417 Q24719846 Q24776024 Q24783836 Q24784987 Q24782502 Q39572 Q24784492 Q24726916 Q24720429 Q24725675 Q24787244 Q24766783 Q24773195 Q24774897 Q24776308 Q24724734 Q24768592 Q24719686 Q24724519 Q24778397 Q24722792 Q24779630 Q24778257 Q24779633 Q24744817 Q24788028 Q24740008 Q24719980 Q24788698 Q24788024 Q24778494 Q24727145 Q24772965 Q24775647 Q24775648 Q24727021 Q24770475 Q24787022 Q24774737 Q24738659 Q24783751 Q24777202
(c(Q15989253)|c(Q234460),P361,c(Q15989253))
action approx
action union
action find_reverse_tuple_counts
relation P361
type Q15989253
type Q15989253
action find_reverse_tuple_counts
relation P361
type Q15989253
type Q234460
action count
action filter_multi_types
action find_reverse
entity Q79899
relation P361
type Q15989253
type Q234460
[ANSWERS] are around the same number of parts or texts a portion of as that part
[[{'concept': 'Q15989253'}, {'concept': 'Q234460'}], 'P361', {'concept': 'Q15989253'}]
SELECT DISTINCT ?m WHERE { FILTER ( ?c = ?u ) . { SELECT DISTINCT ( COUNT ( ?o ) AS ?u ) WHERE { ?o property:P361 resource:Q79899 . { { ?o rdf:type ontology:Q234460 } UNION { ?o rdf:type ontology:Q15989253 } } } } . { SELECT DISTINCT ?m ( COUNT ( ?g ) AS ?c ) WHERE { { ?g property:P361 ?m . ?g rdf:type ontology:Q15989253 . ?m rdf:type ontology:Q15989253 } UNION { ?g property:P361 ?m . ?m rdf:type ontology:Q15989253 . ?g rdf:type ontology:Q234460 } } GROUP BY ?m } }
MCM domain SAM-dependent methyltransferase, EsaF-type, putative Diphthamide synthase domain cylinder Sulphate transport system permease protein 1 SinI-like, DNA-binding domain Dihydrofolate reductase domain membrane Carbohydrate kinase, FGGY, C-terminal Bromodomain Alcohol dehydrogenase, N-terminal Armadillo repeat-containing domain GPCR, family 2, extracellular hormone receptor domain Zinc finger, PHD-type APOBEC-like, N-terminal NUDIX hydrolase domain Tubby, C-terminal DNA methylase N-4/N-6 DAN Mu-type HTH domain 6-phosphogluconate dehydrogenase, NADP-binding Phosphatidylinositol 3-/4-kinase, catalytic domain Accessory regulator, Staphylococcus Glycoside hydrolase family 3 C-terminal domain cylinder block ABC transporter, beta-glucan-transporting ATPase Indole-3-glycerol phosphate synthase DNA recombination and repair protein RecA, monomer-monomer interface Phytochrome chromophore attachment domain XPA C- terminal Mandelate racemase/muconate lactonizing enzyme, C-terminal cell wall Electron transfer flavoprotein, alpha/beta-subunit, N-terminal Transposase, Tn5-like, core Amidohydrolase-related Cytochrome c oxidase subunit II C-terminal 2'-5'-oligoadenylate synthetase 1, domain 2/C-terminal Ferrous iron transporter FeoA domain Zinc finger, DNA glycosylase/AP lyase-type Biotin/lipoyl attachment NUDIX hydrolase Endothelin-like toxin Transcription factor CBF/NF-Y/archaeal histone domain Quinoprotein alcohol dehydrogenase-like superfamily Alkaline phosphatase-like, alpha/beta/alpha GTP binding domain Double-stranded RNA-binding domain Aconitase B, swivel Outer membrane adhesin/peptidase omptin SNF2-related, N-terminal domain DNA-directed RNA polymerase, subunit 2, domain 6 Heat shock protein Hsp90, N-terminal Tymovirus, RNA-dependent RNA polymerase V-ATPase proteolipid subunit C-like domain Alpha-helical ferredoxin Tachykinin domain Ubiquitin-activating enzyme, catalytic cysteine domain centrosome RNA ligase/cyclic nucleotide phosphodiesterase Ribosomal protein S13-like, H2TH DNA topoisomerase I, catalytic core, eukaryotic-type Major facilitator superfamily domain Thiolase, C-terminal Manganese/iron superoxide dismutase, C-terminal DNA-directed RNA polymerase, M/15kDa subunit RNA polymerase subunit, RPB6/omega Enterotoxin Zinc finger, SIAH-type Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal Molybdopterin oxidoreductase single-reed instrument Glycoside hydrolase-type carbohydrate-binding PA14 domain mRNA capping enzyme, C-terminal Ribulose-phosphate binding barrel pelvis FGFR1 oncogene partner (FOP), N-terminal dimerisation domain Ribosomal protein L23/L15e core domain Sulfatase, N-terminal Tumour necrosis factor-like domain POU-specific domain PAS fold-3 RIO kinase Involucrin, N-terminal Transcription regulator PadR, N-terminal nucleoid Ribosomal protein L11, C-terminal Ephrin receptor ligand binding domain Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 2 Guanylate kinase-like domain Clathrin adaptor, beta-adaptin, appendage, Ig-like subdomain LISCH7 Gcp-like domain Ionotropic glutamate receptor Uncharacterised domain DM10 Peptidase S26 Cytochrome b5-like heme/steroid binding domain DNA mismatch repair protein MutS, core Nickel-dependent hydrogenase, large subunit Polyketide synthase, acyl transferase domain Isopropylmalate/citramalate/homocitrate synthase Globin-like UmuC domain 6-phosphogluconate dehydrogenase, domain 2 XPC-binding domain G-protein, beta subunit Peptidase C30/C16 Glyoxalase/fosfomycin resistance/dioxygenase domain Adenylyl cyclase class-3/4/guanylyl cyclase Disintegrin domain PAS fold Pleiotrophin/Midkine, C-terminal domain hypothalamus Rieske [2Fe-2S] iron-sulphur domain cell junction Zinc finger, PHD-finger Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain Phage infection protein, YhgE, C-terminal Crp-type HTH domain Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain Hepatocyte nuclear factor 1, N-terminal Glycosyl-hydrolase family 116, catalytic region DNA photolyase, N-terminal KOW FeS cluster biogenesis Calcitonin peptide-like Carbon-nitrogen hydrolase Arrestin, N-terminal keel Alpha-D-phosphohexomutase, alpha/beta/alpha domain I Calcineurin-like phosphoesterase domain, ApaH type kinetochore Peptidase C19, ubiquitin carboxyl-terminal hydrolase GPCR, family 3, nine cysteines domain Aromatic amino acid beta-eliminating lyase/threonine aldolase Toprim domain ABC transporter, macrolide export, ATP-binding domain FAD-dependent oxidoreductase 2, FAD binding domain Staphylococcal/Streptococcal toxin, OB-fold Chaperone DnaJ, C-terminal Aromatic-ring-hydroxylating dioxygenase, alpha subunit Antenna complex, alpha/beta subunit epidermis DNA-directed DNA polymerase, family B, multifunctional domain Calponin homology domain GHMP kinase N-terminal domain Nicotinamide-nucleotide adenylyltransferase S-adenosylmethionine synthetase, central domain Cupin 1 Zinc finger, FPG/IleRS-type Competence protein ComEA, helix-hairpin-helix domain Ribosomal protein L37ae/L37e Solute-binding protein  family 3/N-terminal domain of MltF 6-phosphogluconate dehydrogenase C-terminal domain-like Tautomerase/MIF superfamily GRIP domain ABC transporter, CbiO/EcfA subunit Plant methyltransferase dimerisation Nitrite reductase [NAD(P)H] small subunit, NirD Alanyl-tRNA synthetase, class IIc, N-terminal HhH-GPD domain Tetraspanin, EC2 domain RNA-binding domain, S1, IF1 type Translation initiation factor 3, N-terminal RfaE bifunctional protein, domain I Alanine racemase, N-terminal ENTH/VHS virion viral occlusion body S-adenosylmethionine decarboxylase, core Nop2p Aldehyde dehydrogenase N-terminal domain Band 7 domain UvrD-like Helicase, ATP-binding domain Beta-grasp domain Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain D-alanine--D-alanine ligase, N-terminal domain Globin/Protoglobin vesicle Peptidase M24 Flagella basal body P-ring formation protein FlgA, C-terminal Rubrerythrin Homeobox domain Phosphoglycerate kinase, N-terminal 2Fe-2S ferredoxin-type iron-sulfur binding domain Cadherin ABC transporter, maltose/maltodextrin import, MalK Methyl-coenzyme M reductase, beta subunit, C-terminal Pleiotrophin/Midkine, N-terminal domain Homoserine dehydrogenase, catalytic Autoinducer synthase Glucosamine/galactosamine-6-phosphate isomerase Adenylate cyclase-associated CAP, C-terminal yard Zinc finger, RING-type Fatty acid desaturase domain Homeodomain engrailed mitochondrion-associated adherens complex Redoxin Histone-fold Myristoyl-CoA:protein N-myristoyltransferase, C-terminal Peptidase S1, PA clan Exoribonuclease, phosphorolytic domain 1 Ly-6 antigen/uPA receptor-like Fibritin C-terminal Ribosomal protein S3, C-terminal Pestivirus NS3, peptidase S31 Transferrin-like domain Superoxide dismutase, copper/zinc binding domain ATP-citrate lyase/succinyl-CoA ligase Oxidoreductase, molybdopterin-binding domain FYVE zinc finger Elongation factor P, C-terminal CTF transcription factor/nuclear factor 1, N-terminal FAD-binding domain Zinc finger, NHR/GATA-type Bacteriophage 933W, L0121, tail fibre, N-terminal Papillomavirus E2, C-terminal synapse Gastrin/cholecystokinin peptide hormone SecA DEAD-like, N-terminal Carboxylesterase, type B Ubiquitin domain Basic-leucine zipper domain Ribosomal protein L18e/L15P Tumour suppressor p53-binding protein-1 Tudor domain Peptidase S8/S53 domain Ribosomal protein L10e/L16 NADH-ubiquinone oxidoreductase 51 kDa subunit, iron-sulphur binding domain Trp repressor/replication initiator Amino acid permease/ SLC12A domain chromoplast Cytotoxic necrotizing factor, Rho-activating domain Lipoxygenase, C-terminal S-adenosyl-L-homocysteine hydrolase, NAD binding domain Carbohydrate-binding domain Xylose isomerase-like, TIM barrel domain Histone acetyltransferase domain, MYST-type Follistatin-like, N-terminal Succinyl-CoA synthetase-like Cyclic nucleotide-binding domain L27 domain Endoribonuclease L-PSP/chorismate mutase-like Zinc finger, U1-C type Aromatic amino acid hydroxylase, C-terminal plastid Translation elongation factor EF1B/ribosomal protein S6 Integration host factor (IHF)-like DNA-binding domain Insulin-like Cystine knot, C-terminal Pyruvate carboxyltransferase IMP dehydrogenase/GMP reductase Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type Synapsin, ATP-binding domain Cold-shock protein, DNA-binding DNA methylase, adenine-specific Radical SAM Lipid-binding serum glycoprotein, N-terminal Signal transduction response regulator, C-terminal effector Ribosomal protein L2, domain 3 DeoR-type HTH domain fingerboard Archaeal Type IV pilin, N-terminal Transketolase-like, pyrimidine-binding domain endocrine system Sucrose-phosphate synthase, glycosyltransferase domain Methylmalonyl-CoA mutase, alpha chain, catalytic Dihydrodipicolinate reductase, C-terminal Zona pellucida domain Zinc finger, C3HC4 RING-type Bacterial transcriptional activator domain foot P-type trefoil domain Multicopper oxidase, type 2 RNA-dependent RNA polymerase, bunyaviral Heavy metal-associated domain, copper ion-binding Ras guanine-nucleotide exchange factors catalytic domain p53-like transcription factor, DNA-binding D-alanine--D-alanine ligase, C-terminal Porphobilinogen deaminase, C-terminal Sugar isomerase (SIS) Aminotransferase class V domain nucleus Mandelate racemase/muconate lactonizing enzyme, N-terminal domain Arrestin-like, N-terminal Cystatin domain Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 Four-helical cytokine-like, core Nucleotide-binding alpha-beta plait domain Membrane attack complex component/perforin (MACPF) domain Retropepsins OmpA-like domain Sucrose phosphate synthase, sucrose phosphatase-like domain Tryptophan synthase beta subunit-like PLP-dependent enzyme FERM/acyl-CoA-binding protein, 3-helical bundle RlpA-like protein, double-psi beta-barrel domain Cytidine and deoxycytidylate deaminases, zinc-binding DNA binding HTH domain, AraC-type Acanthamoeba polyphaga mimivirus, L690 InsA N-terminal domain Nerve growth factor-related Outer membrane protein/outer membrane enzyme PagP,  beta-barrel DNA repair Rad51/transcription factor NusA, alpha-helical Iron dependent repressor, metal binding and dimerisation domain Chitin-binding, type 1 2-5-oligoadenylate synthetase, N-terminal Integrase, SAM-like, N-terminal Aldolase-type TIM barrel Prephenate dehydratase Diacylglycerol/phorbol-ester binding Guanylate kinase/L-type calcium channel beta subunit sarcoplasm reproductive system DEAD/DEAH box helicase domain Retroviral Gag polyprotein, M FERM central domain Target SNARE coiled-coil homology domain Translation elongation factor EFTs/EF1B, dimerisation RNA-binding S4 domain ABC transporter, molybdenum import, ModC Zinc-binding ribosomal protein Haem oxygenase-like, multi-helical Zinc finger, RING/FYVE/PHD-type bow HSP20-like chaperone DNA-directed DNA polymerase, family A, palm domain Rhodanese-like domain Sodium:galactoside symporter LysR, substrate-binding Malate synthase-like GAF domain EH domain N-(5'phosphoribosyl) anthranilate isomerase (PRAI) Thioredoxin domain Myosin, N-terminal, SH3-like Apoptosis regulator, Bcl-2 protein, BH4 Heavy metal-associated domain, HMA Carbohydrate-binding type-2 domain 5'-3' exonuclease, C-terminal domain NADH-ubiquinone oxidoreductase 51 kDa subunit, FMN-binding domain Pyruvate/Phosphoenolpyruvate kinase-like domain GTP cyclohydrolase I domain Haemerythrin, metal-binding domain Galactose-binding domain-like F420-binding domain, putative Staphostatin B Copper type II, ascorbate-dependent monooxygenase, N-terminal Phosphotransferase system, IIB component, type 1 Integrase, catalytic core Barwin domain Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal ATPase, AAA-type, core DNA-directed RNA polymerase, RBP11-like dimerisation domain Kringle Calycin-like Putative DNA-binding domain Trehalose synthase/alpha-amylase, N-terminal Membrane transport protein, MMPL domain Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DNA helicase E1 protein, C-terminal, Papillomavirus LRV FeS4 cluster Cyclic nucleotide-binding-like AsnC-type HTH domain RNA polymerase sigma-70 region 2 Dockerin domain NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding Ookinete surface antigen, EGF domain Immunoglobulin C1-set Collagen-binding surface protein Cna, B-type domain RfaE bifunctional protein, domain II Glycoside hydrolase, family 70, catalytic domain GroES-like Type II secretion system F domain HRDC domain Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Electron transfer flavoprotein, alpha subunit, C-terminal Sirohaem synthase, N-terminal Nitrogen regulatory PII-like, alpha/beta 4Fe-4S ferredoxin-type, iron-sulphur binding domain Ribosomal protein S5, N-terminal Ribonucleotide reductase, class I , alpha subunit Phosphofructokinase domain Replication protein A, C-terminal Interferon regulatory factor DNA-binding domain Fibronectin type III Roc domain GMP phosphodiesterase, delta subunit Isoprenoid synthase domain DNA glycosylase Amyloidogenic glycoprotein, copper-binding Bactericidal permeability-increasing protein, alpha/beta domain Glucose-6-phosphate isomerase, prokaryote Methylmalonyl-CoA mutase, alpha/beta chain, catalytic HTH domain, IS21 transposase-type PapD-like Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal Nucleoside phosphorylase domain Protein kinase domain Mur ligase, central Plexin, cytoplasmic RasGAP domain ATP-grasp fold, DUF201-type Ribosome maturation protein SBDS, N-terminal ABC transporter, NodI Ribosomal protein S4e, N-terminal ATP phosphoribosyltransferase, catalytic domain GPCR family 3, C-terminal Rapsyn, myristoylation/linker region, N-terminal Semialdehyde dehydrogenase, dimerisation domain Ribosomal RNA adenine methylase transferase, N-terminal Galactokinase galactose-binding domain Neurotransmitter-gated ion-channel ligand-binding domain PRD domain Thiamine pyrophosphate enzyme, C-terminal TPP-binding Domain of unknown function DUF1929 Glutamine synthetase/guanido kinase, catalytic domain other organism Cellulose-binding family II/chitobiase, carbohydrate-binding domain Large T antigen, polyomavirus, C-terminal Glycosyl-hydrolase 97, catalytic domain Flagellar basal body rod protein, N-terminal Selenium-dependent molybdenum hydroxylase system protein, YqeB family Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal Bicarbonate transporter, C-terminal DNA polymerase beta-like, N-terminal domain Glycoprotein hormone subunit beta, cystine knot Peptidoglycan binding-like Globin Transcription elongation factor, GreA/GreB, C-terminal 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Zinc finger, U1-type Nitrite/sulphite reductase 4Fe-4S domain Ezrin/radixin/moesin, C-terminal Pseudouridine synthase, RsuA/RluB/C/D/E/F Copper resistance protein CopC/internalin, immunoglobulin-like Impact, N-terminal Elongator protein 3/MiaB/NifB Ribonucleotide reductase-related Clathrin adaptor, gamma-adaptin, appendage Fumarate lyase, N-terminal Beta-amyloid precursor protein C-terminal Dual specificity phosphatase, catalytic domain 3-oxoacid CoA-transferase, subunit A Metallo-beta-lactamase PPM-type phosphatase domain UBA-like HTH ArsR-type DNA-binding domain Integrating conjugative element, PFGI-1, ParB ankle Patatin/Phospholipase A2-related Translation protein, beta-barrel domain Carbohydrate kinase, FGGY, N-terminal PHM/PNGase F domain Photosystem II cytochrome b559, N-terminal Pancreatic trypsin inhibitor Kunitz domain Ferritin-related Chromosomal replication initiator, DnaA C-terminal Dbl homology (DH) domain Acyl transferase nervous system ABC transporter, teichoic acids export, TagH Aminoacyl-tRNA synthetase, class Ia FAD-linked oxidase, C-terminal RmlC-like cupin domain Chemokine interleukin-8-like domain Glycoside hydrolase, family 42, N-terminal Zinc finger, MYM-type ATP-grasp fold, succinyl-CoA synthetase-type Dynamin, GTPase domain AMP-binding Clathrin adaptor, alpha-adaptin, appendage, Ig-like subdomain vacuole Acyl transferase domain Mss4-like Transforming growth factor-beta, C-terminal Fucolectin tachylectin-4 pentraxin-1 Replication origin-binding protein Bifunctional inhibitor/plant lipid transfer protein/seed storage helical domain Flavoprotein pyridine nucleotide cytochrome reductase Alpha carbonic anhydrase MotA/TolQ/ExbB proton channel S-adenosylmethionine synthetase, C-terminal ABC transporter, sulphate/thiosulphate import, ATP-binding protein CysA, C-terminal LSM domain organ Histidine kinase-like ATPase, C-terminal domain Corticotropin-releasing factor Fork head domain lysosome Haem peroxidase, plant/fungal/bacterial Hexokinase, N-terminal Amine oxidase RNA polymerase, beta subunit, protrusion Cold shock protein MIR motif CAP domain Proliferating cell nuclear antigen, PCNA, N-terminal Glycine radical domain Oxoglutarate/iron-dependent dioxygenase Multicopper oxidase, type 3 multicellular structure Soluble quinoprotein glucose/sorbosone dehydrogenase Nitrogenase/oxidoreductase, component 1 Pleiotrophin/Midkine disulphide-rich domain Zn-dependent metallo-hydrolase, RNA specificity domain FERM, N-terminal Microcompartment protein, bacteria Resolvase, N-terminal catalytic domain Transcription elongation factor, GreA/GreB, N-terminal Superantigen toxin, C-terminal Flavodoxin/nitric oxide synthase WD40-repeat-containing domain Zinc finger, C2H2 Hemopexin-like domain tRNA(Ile)-lysidine synthase , substrate-binding domain SAM-dependent methyltransferase RsmB/NOP2-type AMP-dependent synthetase/ligase RNA-directed RNA polymerase, flavivirus Disulphide isomerase Peroxin domain RNA polymerase, subunit H/Rpb5 C-terminal Laminin EGF domain Polyketide synthase, methyltransferase domain Methyltransferase small domain Serum albumin-like Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain Initiator Rep protein Uncharacterised domain, helicase/relaxase, putative RNA polymerase, N-terminal EGF-like calcium-binding domain Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid REJ domain Molybdopterin oxidoreductase, 4Fe-4S domain Glycine cleavage system P-protein, N-terminal Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal Follistatin/Osteonectin EGF domain Phosphatidic acid phosphatase type 2/haloperoxidase Tubulin/FtsZ, GTPase domain Paramyxovirinae P phosphoprotein C-terminal domain Luciferase-like domain Cullin protein, neddylation domain Tetratricopeptide repeat-containing domain naval artillery Trehalose synthase/probable maltokinase, C-terminal domain actin filament Legume lectin domain Aminoacyl-tRNA synthetase, class II (D/K/N) EGF-like domain, extracellular RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta Zinc finger, DksA/TraR C4-type DNA-directed RNA polymerase, insert domain Glycoside hydrolase, family 5 HIT-like domain Translation elongation factor EF1B, beta/delta subunit, guanine nucleotide exchange domain ATP-grasp fold, RimK-type Non-ribosomal peptide synthetase, C-terminal Amino acid adenylation domain Endonuclease/exonuclease/phosphatase DNA ligase, ATP-dependent, central Metallothionein domain Aspartate/glutamate/uridylate kinase Myelin-PO, C-terminal Alpha-2-macroglobulin, thiol-ester bond-forming ACT domain RNA polymerase II, Rpb4, core Zinc finger, DksA/TraR C4-type, bacteria Homeobox engrailed, C-terminal ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal Acylphosphatase-like domain Exopolysaccharide synthesis protein Pyruvate kinase-like, insert domain Phosphoenolpyruvate carboxykinase, C-terminal DNA-directed RNA polymerase, RpoA/D/Rpb3-type Multihaem cytochrome Ribosomal protein L2, C-terminal Peptidase M50 Proteinase inhibitor I25, cystatin, conserved region C-type lectin-like/link domain ribosome Glycosyl transferase, family 3 Thrombomodulin-like, EGF-like Integrating conjugative element relaxase, PFGI-1 class NAF domain hull Glutamyl/glutaminyl-tRNA synthetase, class Ib, anti-codon binding domain POU domain Six-hairpin glycosidase Cryptochrome/DNA photolyase, FAD-binding domain umbilical cord Alcohol dehydrogenase, C-terminal Kinesin motor domain Lytic transglycosylase MltA MoaB/Mog domain ERp29, N-terminal symplast Trimeric LpxA-like Proteasome component (PCI) domain Conserved hypothetical protein CHP03437, C-terminal, Solibacter usitatus organelle Ribonuclease B, N-terminal OB domain Signal transduction histidine kinase, sporulation regulator SpoOB Immunoglobulin/albumin-binding domain Serine-threonine/tyrosine-protein kinase catalytic domain DnaJ domain Methyl-coenzyme M reductase, alpha/beta subunit, C-terminal Sialidases Precorrin-2 C(20)-methyltransferase domain extracellular region Citrate lyase ligase, C-terminal Calycin Inosine/uridine-preferring nucleoside hydrolase domain Pili assembly chaperone, N-terminal High mobility group box domain Aminotransferase, class I/classII Tubulin/FtsZ, C-terminal Thioredoxin-like fold PH domain-like ABC transporter, ferric cation import, FbpC Single hybrid motif Domain of unknown function DUF629 face Precorrin-3B C17-methyltransferase domain Tyrosine-protein kinase, catalytic domain Nucleotidyl transferase domain RecF/RecN/SMC, N-terminal C-type lectin fold XPG-I domain Helicase-like, DEXD box c2 type tRNA endonuclease-like domain L27 domain, C-terminal Pyruvate phosphate dikinase, PEP/pyruvate-binding 3-hydroxyacyl-CoA dehydrogenase, C-terminal Orn/DAP/Arg decarboxylase 2, N-terminal Ribosomal protein L7Ae/L30e/S12e/Gadd45 Enolase, C-terminal TIM barrel domain central nervous system Myristoyl-CoA:protein N-myristoyltransferase, N-terminal Alpha/beta hydrolase fold-1 Peptidase M10 serralysin, C-terminal cytoplasm Mss4/translationally controlled tumour-associated TCTP Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, N-terminal Peptidase M16, N-terminal Homeodomain, metazoa Aldehyde dehydrogenase, C-terminal Glycosyl hydrolase family 53 Tetrapyrrole biosynthesis, 5-aminolevulinic acid synthase TonB-dependent receptor, beta-barrel V(D)J recombination-activating protein 1, Zinc finger Four-helical cytokine, core mitochondrion Domain of unknown function DUF3152 Bifunctional trypsin/alpha-amylase inhibitor helical domain Putative membrane-bound dehydrogenase Alcohol dehydrogenase, iron-type Prokaryotic glutathione synthetase, ATP-binding Carbohydrate kinase PfkB Staphylococcal/Streptococcal toxin, beta-grasp domain Acyl-CoA dehydrogenase/oxidase C-terminal Ephrin receptor-binding domain Restriction modification methylase Eco57I Pyridoxal phosphate-dependent transferase, major region, subdomain 1 Copper type II, ascorbate-dependent monooxygenase-like, C-terminal NADH:ubiquinone oxidoreductase, 30kDa subunit XPG N-terminal Gap junction protein, cysteine-rich domain Acyl-CoA-binding protein, ACBP Malic enzyme, NAD-binding Acyl transferase/acyl hydrolase/lysophospholipase FAD dependent oxidoreductase Phloem filament PP1 SPARC/Testican, calcium-binding domain Ribosomal protein L6, alpha-beta domain Tyrosine-protein kinase, non-receptor, TYK2, N-terminal Carbohydrate-binding/sugar hydrolysis domain Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain Type I cytokine receptor, cytokine-binding domain Kringle-like fold Calreticulin/calnexin, P domain Tetrapyrrole methylase, subdomain 1 Ribosomal protein S4/S9, N-terminal PAS fold-4 Regulator of nonsense-mediated decay, UPF3 C2 domain Acyl-CoA oxidase/dehydrogenase, central domain Alphavirus E1 glycoprotein Ribosomal protein L30, ferredoxin-like fold domain
Pyridoxal phosphate-dependent transferase, major region, subdomain 1, Protein kinase domain and Aldolase-type TIM barrel are around the same number of parts or texts a portion of as that part
Pyridoxal phosphate-dependent transferase, major region, subdomain 1 Protein kinase domain Aldolase-type TIM barrel
action approx
action union
action find_reverse_tuple_counts
relation part of
type part
type part
action find_reverse_tuple_counts
relation part of
type part
type text
action count
action filter_multi_types
action find_reverse
entity cytoplasm
relation part of
type part
type text
[[{'concept': 'part'}, {'concept': 'text'}], 'part of', {'concept': 'part'}]
SELECT DISTINCT ?m WHERE { FILTER ( ?c = ?u ) . { SELECT DISTINCT ( COUNT ( ?o ) AS ?u ) WHERE { ?o property:part_of resource:cytoplasm . { { ?o rdf:type ontology:text } UNION { ?o rdf:type ontology:part } } } } . { SELECT DISTINCT ?m ( COUNT ( ?g ) AS ?c ) WHERE { { ?g property:part_of ?m . ?g rdf:type ontology:part . ?m rdf:type ontology:part } UNION { ?g property:part_of ?m . ?m rdf:type ontology:part . ?g rdf:type ontology:text } } GROUP BY ?m } }
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