Simple Question (Direct)
Simple Question
Q21496802
P703
Q16521
USER
Which taxon is Receptor expression-enhancing protein 6 found in ?
(Q21496802,P703,c(Q16521))
action filter_type
action find
entity Q21496802
relation P703
type Q16521
['Q21496802', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?u WHERE { resource:Q21496802 property:P703 ?u . ?u rdf:type ontology:Q16521 }
Receptor expression-enhancing protein 6
action filter_type
action find
entity Receptor expression-enhancing protein 6
relation found in taxon
type taxon
['Receptor expression-enhancing protein 6', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?u WHERE { resource:Receptor_expression-enhancing_protein_6 property:found_in_taxon ?u . ?u rdf:type ontology:taxon }
[]
taxon
Q83310
SYSTEM
Mus musculus
Q83310
(Q21496802,P703,c(Q16521))
action filter_type
action find
entity Q21496802
relation P703
type Q16521
[ANSWER] is Receptor expression-enhancing protein 6 found in
['Q21496802', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?u WHERE { resource:Q21496802 property:P703 ?u . ?u rdf:type ontology:Q16521 }
Mus musculus
Mus musculus is Receptor expression-enhancing protein 6 found in
Mus musculus
action filter_type
action find
entity Receptor expression-enhancing protein 6
relation found in taxon
type taxon
['Receptor expression-enhancing protein 6', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?u WHERE { resource:Receptor_expression-enhancing_protein_6 property:found_in_taxon ?u . ?u rdf:type ontology:taxon }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21496802
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(c(Q863908),P688,Q83310)
action filter_type
action find_reverse
entity Q21496802
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q83310']
SELECT DISTINCT ?l WHERE { ?l rdf:type ontology:Q863908 . ?l property:P688 resource:Q21496802 }
Receptor expression-enhancing protein 6
action filter_type
action find_reverse
entity Receptor expression-enhancing protein 6
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Mus musculus']
SELECT DISTINCT ?l WHERE { ?l rdf:type ontology:nucleic_acid_sequence . ?l property:encodes resource:Receptor_expression-enhancing_protein_6 }
[]
nucleic acid sequence
Q18264219
SYSTEM
Reep6
Q18264219
(c(Q863908),P688,Q83310)
action filter_type
action find_reverse
entity Q21496802
relation P688
type Q863908
[ANSWER] encodes that nutrient
[{'concept': 'Q863908'}, 'P688', 'Q83310']
SELECT DISTINCT ?l WHERE { ?l rdf:type ontology:Q863908 . ?l property:P688 resource:Q21496802 }
Reep6
Reep6 encodes that nutrient
Reep6
action filter_type
action find_reverse
entity Receptor expression-enhancing protein 6
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Mus musculus']
SELECT DISTINCT ?l WHERE { ?l rdf:type ontology:nucleic_acid_sequence . ?l property:encodes resource:Receptor_expression-enhancing_protein_6 }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18264219
P684
Q863908
USER
What is an otrhologus gene for that one ?
(Q18264219,P684,c(Q863908))
action filter_type
action find
entity Q18264219
relation P684
type Q863908
['Q18264219', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?l WHERE { ?l rdf:type ontology:Q863908 . resource:Q18264219 property:P684 ?l }
Reep6
action filter_type
action find
entity Reep6
relation ortholog
type nucleic acid sequence
['Reep6', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?l WHERE { ?l rdf:type ontology:nucleic_acid_sequence . resource:Reep6 property:ortholog ?l }
[]
nucleic acid sequence
Q18048673
SYSTEM
REEP6
Q18048673
(Q18264219,P684,c(Q863908))
action filter_type
action find
entity Q18264219
relation P684
type Q863908
An otrhologus gene for that one is the [ANSWER]
['Q18264219', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?l WHERE { ?l rdf:type ontology:Q863908 . resource:Q18264219 property:P684 ?l }
REEP6
An otrhologus gene for that one is the REEP6
REEP6
action filter_type
action find
entity Reep6
relation ortholog
type nucleic acid sequence
['Reep6', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?l WHERE { ?l rdf:type ontology:nucleic_acid_sequence . resource:Reep6 property:ortholog ?l }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q27747392 Q21496802
P681
Q5058355
USER
Which cellular components are the components of Receptor expression-enhancing protein 6 or polyamine ABC transporter permease    MSMEG_0659 ?
OR((Q21496802,P681,c(Q5058355)), (Q27747392,P681,c(Q5058355)))
action filter_type
action union
action find
entity Q21496802
relation P681
action find
entity Q27747392
relation P681
type Q5058355
{'OR': [['Q21496802', 'P681', {'concept': 'Q5058355'}], ['Q27747392', 'P681', {'concept': 'Q5058355'}]]}
SELECT DISTINCT ?g WHERE { { { resource:Q27747392 property:P681 ?g } UNION { resource:Q21496802 property:P681 ?g } } . ?g rdf:type ontology:Q5058355 }
polyamine ABC transporter permease    MSMEG_0659 Receptor expression-enhancing protein 6
action filter_type
action union
action find
entity Receptor expression-enhancing protein 6
relation cell component
action find
entity polyamine ABC transporter permease    MSMEG_0659
relation cell component
type cellular component
{'OR': [['Receptor expression-enhancing protein 6', 'cell component', {'concept': 'cellular component'}], ['polyamine ABC transporter permease    MSMEG_0659', 'cell component', {'concept': 'cellular component'}]]}
SELECT DISTINCT ?g WHERE { { { resource:polyamine_ABC_transporter_permease____MSMEG_0659 property:cell_component ?g } UNION { resource:Receptor_expression-enhancing_protein_6 property:cell_component ?g } } . ?g rdf:type ontology:cellular_component }
[]
cellular component
Q79927 Q14329032 Q14349538 Q29548
SYSTEM
endoplasmic reticulum, endoplasmic reticulum membrane, apical part of cell, plasma membrane
Q79927 Q14329032 Q14349538 Q29548
OR((Q21496802,P681,c(Q5058355)), (Q27747392,P681,c(Q5058355)))
action filter_type
action union
action find
entity Q21496802
relation P681
action find
entity Q27747392
relation P681
type Q5058355
[ANSWERS] are the components of Receptor expression-enhancing protein 6 or polyamine ABC transporter permease MSMEG_0659
{'OR': [['Q21496802', 'P681', {'concept': 'Q5058355'}], ['Q27747392', 'P681', {'concept': 'Q5058355'}]]}
SELECT DISTINCT ?g WHERE { { { resource:Q27747392 property:P681 ?g } UNION { resource:Q21496802 property:P681 ?g } } . ?g rdf:type ontology:Q5058355 }
endoplasmic reticulum endoplasmic reticulum membrane apical part of cell plasma membrane
Endoplasmic reticulum, endoplasmic reticulum membrane, apical part of cell and plasma membrane are the components of Receptor expression-enhancing protein 6 or polyamine ABC transporter permease MSMEG_0659
endoplasmic reticulum endoplasmic reticulum membrane apical part of cell plasma membrane
action filter_type
action union
action find
entity Receptor expression-enhancing protein 6
relation cell component
action find
entity polyamine ABC transporter permease    MSMEG_0659
relation cell component
type cellular component
{'OR': [['Receptor expression-enhancing protein 6', 'cell component', {'concept': 'cellular component'}], ['polyamine ABC transporter permease    MSMEG_0659', 'cell component', {'concept': 'cellular component'}]]}
SELECT DISTINCT ?g WHERE { { { resource:polyamine_ABC_transporter_permease____MSMEG_0659 property:cell_component ?g } UNION { resource:Receptor_expression-enhancing_protein_6 property:cell_component ?g } } . ?g rdf:type ontology:cellular_component }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q22229417 Q18264219
P702
Q181394
USER
Which nutrients do Reep6 or HTH-type transcriptional regulator    Rv1353c encode ?
OR((c(Q181394),P702,Q18264219), (c(Q181394),P702,Q22229417))
action filter_type
action union
action find_reverse
entity Q18264219
relation P702
action find_reverse
entity Q22229417
relation P702
type Q181394
{'OR': [[{'concept': 'Q181394'}, 'P702', 'Q18264219'], [{'concept': 'Q181394'}, 'P702', 'Q22229417']]}
SELECT DISTINCT ?u WHERE { { VALUES ( ?b ) { ( resource:Q18264219 ) ( resource:Q22229417 ) } . ?u property:P702 ?b } . ?u rdf:type ontology:Q181394 }
HTH-type transcriptional regulator    Rv1353c Reep6
action filter_type
action union
action find_reverse
entity Reep6
relation encoded by
action find_reverse
entity HTH-type transcriptional regulator    Rv1353c
relation encoded by
type nutrient
{'OR': [[{'concept': 'nutrient'}, 'encoded by', 'Reep6'], [{'concept': 'nutrient'}, 'encoded by', 'HTH-type transcriptional regulator    Rv1353c']]}
SELECT DISTINCT ?u WHERE { { VALUES ( ?b ) { ( resource:Reep6 ) ( resource:HTH-type_transcriptional_regulator____Rv1353c ) } . ?u property:encoded_by ?b } . ?u rdf:type ontology:nutrient }
[]
nutrient
Q21496802 Q22234028
SYSTEM
Receptor expression-enhancing protein 6, HTH-type transcriptional regulator    Rv1353c
Q21496802 Q22234028
OR((c(Q181394),P702,Q18264219), (c(Q181394),P702,Q22229417))
action filter_type
action union
action find_reverse
entity Q18264219
relation P702
action find_reverse
entity Q22229417
relation P702
type Q181394
[ANSWERS]
{'OR': [[{'concept': 'Q181394'}, 'P702', 'Q18264219'], [{'concept': 'Q181394'}, 'P702', 'Q22229417']]}
SELECT DISTINCT ?u WHERE { { VALUES ( ?b ) { ( resource:Q18264219 ) ( resource:Q22229417 ) } . ?u property:P702 ?b } . ?u rdf:type ontology:Q181394 }
Receptor expression-enhancing protein 6 HTH-type transcriptional regulator    Rv1353c
Reep6 or HTH-type transcriptional regulator Rv1353c encode r Receptor expression-enhancing protein 6 and HTH-type transcriptional regulator Rv1353c
Receptor expression-enhancing protein 6 HTH-type transcriptional regulator    Rv1353c
action filter_type
action union
action find_reverse
entity Reep6
relation encoded by
action find_reverse
entity HTH-type transcriptional regulator    Rv1353c
relation encoded by
type nutrient
{'OR': [[{'concept': 'nutrient'}, 'encoded by', 'Reep6'], [{'concept': 'nutrient'}, 'encoded by', 'HTH-type transcriptional regulator    Rv1353c']]}
SELECT DISTINCT ?u WHERE { { VALUES ( ?b ) { ( resource:Reep6 ) ( resource:HTH-type_transcriptional_regulator____Rv1353c ) } . ?u property:encoded_by ?b } . ?u rdf:type ontology:nutrient }
[]
Quantitative Reasoning (All)
Quantitative|Min/Max|Mult. entity type
P129
Q181394 Q79529 Q181394
USER
Which nutrients do min number of chemical substances or nutrients communicate with ?
(c(Q79529)|c(Q181394),P129,c(Q181394))
action argmin
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
[[{'concept': 'Q79529'}, {'concept': 'Q181394'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?y WHERE { { SELECT DISTINCT ( MIN ( ?u ) AS ?b ) { SELECT DISTINCT ( COUNT ( ?z ) AS ?u ) ?j WHERE { ?z rdf:type ?d . VALUES ( ?d ) { ( ontology:Q181394 ) ( ontology:Q79529 ) } } GROUP BY ?j } } . FILTER ( ?e = ?b ) . { SELECT DISTINCT ( COUNT ( ?o ) AS ?e ) ?y WHERE { { ?o property:P129 ?y . ?o rdf:type ontology:Q79529 . ?y rdf:type ontology:Q181394 } UNION { ?o property:P129 ?y . ?y rdf:type ontology:Q181394 . ?o rdf:type ontology:Q181394 } } GROUP BY ?y } }
action argmin
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
[[{'concept': 'chemical substance'}, {'concept': 'nutrient'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?y WHERE { { SELECT DISTINCT ( MIN ( ?u ) AS ?b ) { SELECT DISTINCT ( COUNT ( ?z ) AS ?u ) ?j WHERE { ?z rdf:type ?d . VALUES ( ?d ) { ( ontology:nutrient ) ( ontology:chemical_substance ) } } GROUP BY ?j } } . FILTER ( ?e = ?b ) . { SELECT DISTINCT ( COUNT ( ?o ) AS ?e ) ?y WHERE { { ?o property:physically_interacts_with ?y . ?o rdf:type ontology:chemical_substance . ?y rdf:type ontology:nutrient } UNION { ?o property:physically_interacts_with ?y . ?y rdf:type ontology:nutrient . ?o rdf:type ontology:nutrient } } GROUP BY ?y } }
[]
nutrient chemical substance nutrient
Q5446456 Q15335226 Q254943
SYSTEM
Fibroblast growth factor receptor 2, D(2) dopamine receptor, Retinoic acid receptor alpha
Q21494718 Q21115210 Q21119831 Q21108693 Q21109971 Q21104718 Q21119231 Q21115284 Q21987850 Q423701 Q420930 Q1407929 Q21173169 Q21497881 Q21118791 Q1499998 Q1947065 Q15335226 Q14864142 Q7553281 Q4216080 Q410142 Q4048886 Q21113552 Q21137668 Q1552797 Q21135205 Q424440 Q21117208 Q21102756 Q3609382 Q21113671 Q401536 Q258915 Q21126218 Q21130085 Q21135448 Q21173374 Q21126810 Q21984557 Q7861688 Q21118909 Q21136517 Q21496578 Q21496575 Q21496576 Q2042529 Q21109974 Q21985924 Q5038044 Q14905270 Q5201199 Q905736 Q21135975 Q21172213 Q14914580 Q5198252 Q21109744 Q21124458 Q21111742 Q21123239 Q15324125 Q21115204 Q21110467 Q254943 Q21119828 Q21118920 Q6414726 Q22680153 Q21108482 Q21116513 Q21499436 Q21097491 Q21111162 Q21116946 Q21115906 Q21114332 Q21119851 Q417149 Q5611730 Q21154430 Q412483 Q1493174 Q11071131 Q21497887 Q22676679 Q5514257 Q3459294 Q21119672 Q21987843 Q21118732 Q21110396 Q419999 Q21135949 Q21096262 Q21135943 Q21135945 Q21117235 Q21108844 Q21119704 Q21111803 Q22679015 Q15322943 Q21174687 Q21105060 Q21125240 Q21118356 Q21117300 Q21175110 Q21175111 Q4036865 Q21983261 Q21102300 Q21139123 Q21108338 Q21496918 Q21117407 Q21110752 Q408305 Q21097237 Q21120955 Q14911895 Q3721138 Q21108487 Q14905748 Q21102136 Q5014947 Q423572 Q12746111 Q21499210 Q21100639 Q21119156 Q2819188 Q21119157 Q21115989 Q21118919 Q7136149 Q21106693 Q21103198 Q5464652 Q356093 Q21119847 Q22677167 Q21132917 Q21132915 Q21135411 Q21113504 Q14912057 Q21989670 Q21127300 Q21111553 Q21108161 Q21172884 Q21172886 Q1436420 Q21111833 Q21106691 Q6981557 Q14914198 Q21138907 Q21172286 Q21122921 Q21121233 Q21159525 Q22678664 Q5446457 Q5446456 Q21106737 Q5446453 Q14914104 Q3271142 Q21992684 Q21109026 Q21113832 Q21123416 Q21121086 Q21984578 Q21133205 Q21102082 Q21984577 Q904925 Q3415811 Q21131101 Q5014958 Q2521094 Q5014957 Q415718 Q21982203 Q21113540 Q423561 Q21120051 Q21115996 Q22676802 Q21109157 Q21115998 Q21988427 Q21991039 Q411791 Q21118884 Q21127141 Q21111265 Q15327766 Q21118970 Q21118976 Q416336 Q21173608 Q21136134 Q21129997 Q6592976 Q423628 Q21113510 Q424693 Q21123223 Q410434 Q6449560 Q21111520 Q21984381 Q21125499 Q21499447 Q5201201 Q21495791 Q21121496 Q21123220 Q21134814 Q21113683 Q21118710 Q418781
(c(Q79529)|c(Q181394),P129,c(Q181394))
action argmin
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
Min number of chemical substances or nutrients communicate with [ANSWERS]
[[{'concept': 'Q79529'}, {'concept': 'Q181394'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?y WHERE { { SELECT DISTINCT ( MIN ( ?u ) AS ?b ) { SELECT DISTINCT ( COUNT ( ?z ) AS ?u ) ?j WHERE { ?z rdf:type ?d . VALUES ( ?d ) { ( ontology:Q181394 ) ( ontology:Q79529 ) } } GROUP BY ?j } } . FILTER ( ?e = ?b ) . { SELECT DISTINCT ( COUNT ( ?o ) AS ?e ) ?y WHERE { { ?o property:P129 ?y . ?o rdf:type ontology:Q79529 . ?y rdf:type ontology:Q181394 } UNION { ?o property:P129 ?y . ?y rdf:type ontology:Q181394 . ?o rdf:type ontology:Q181394 } } GROUP BY ?y } }
Lysophosphatidic acid receptor 2 ATP-binding cassette sub-family A member 1 Potassium voltage-gated channel subfamily H member 5 G-protein coupled receptor 87 Cation channel sperm-associated protein 4 Solute carrier family 22 member 3 Tyrosine-protein kinase TXK Activated CDC42 kinase 1 Prostaglandin E2 receptor EP2 subtype Coagulation factor X Glutathione reductase, mitochondrial Cytochrome P450 1A1 Lysophosphatidic acid receptor 3 G protein-activated inward rectifier potassium channel 4 Multidrug resistance-associated protein 5 Voltage-dependent L-type calcium channel subunit alpha-1C Voltage-dependent N-type calcium channel subunit alpha-1B D(2) dopamine receptor 3-hydroxy-3-methylglutaryl-coenzyme A reductase Solute carrier family 12 member 3 72 kDa type IV collagenase Sodium-dependent serotonin transporter 3-oxo-5-alpha-steroid 4-dehydrogenase 2 ATP-sensitive inward rectifier potassium channel 14 Fibroblast growth factor receptor 4 Heat-stable enterotoxin receptor Dihydroorotate dehydrogenase (quinone), mitochondrial Cytochrome P450 3A4 Chymotrypsin-like elastase family member 1 Testis-specific serine/threonine-protein kinase 1 Cytochrome P450 11B2, mitochondrial ATP-binding cassette sub-family C member 8 Tyrosine-protein kinase Blk Renin Folate transporter 1 Mitogen-activated protein kinase kinase kinase kinase 5 Sodium channel protein type 2 subunit alpha Plasminogen Prostaglandin G/H synthase 1 Potassium voltage-gated channel subfamily D member 1 Non-receptor tyrosine-protein kinase TYK2 Ovarian cancer G-protein coupled receptor 1 Zinc-activated ligand-gated ion channel Lysophosphatidic acid receptor 3 Lysophosphatidic acid receptor 4 Lysophosphatidic acid receptor 6 Toll-like receptor 9 Cation channel sperm-associated protein 3 P2X purinoceptor 4 Carbonic anhydrase 4 Thyrotropin-releasing hormone receptor Cysteinyl leukotriene receptor 2 Prostacyclin receptor Multidrug and toxin extrusion protein 1 Solute carrier family 22 member 1 Short transient receptor potential channel 6 Cyclin-dependent kinase 6 Dual specificity mitogen-activated protein kinase kinase 7 Sodium-dependent neutral amino acid transporter B(0)AT2 Complement C1r subcomponent Cone cGMP-specific 3',5'-cyclic phosphodiesterase subunit alpha' Transient receptor potential cation channel subfamily V member 4 5'-AMP-activated protein kinase subunit beta-1 Potassium-transporting ATPase alpha chain 1 Retinoic acid receptor alpha ATP-sensitive inward rectifier potassium channel 8 P2X purinoceptor 3 ATP-sensitive inward rectifier potassium channel 11 Ornithine decarboxylase DNA topoisomerase 2-alpha Serine/threonine-protein kinase 4 Muscarinic acetylcholine receptor M1 Sodium/potassium-transporting ATPase subunit alpha-1 Acetylcholine receptor subunit alpha Carbonic anhydrase 12 Poly [ADP-ribose] polymerase 2 Tubulin beta chain Potassium channel subfamily K member 4 Dihydrofolate reductase Growth hormone-releasing hormone receptor Lysophosphatidic acid receptor 4 Cholesterol side-chain cleavage enzyme, mitochondrial Vitamin K-dependent gamma-carboxylase Glucagon-like peptide 2 receptor G protein-activated inward rectifier potassium channel 1 Acetylcholinesterase G-protein coupled estrogen receptor 1 Sodium channel protein type 5 subunit alpha Phosphatidylinositol 4-kinase type 2-beta Prostaglandin E2 receptor EP4 subtype Maltase-glucoamylase, intestinal Peptidyl-prolyl cis-trans isomerase FKBP1A Transthyretin Solute carrier family 22 member 11 Sodium leak channel non-selective protein Solute carrier family 22 member 8 Solute carrier family 22 member 12 Nuclear receptor ROR-beta P2X purinoceptor 4 Dual 3',5'-cyclic-AMP and -GMP phosphodiesterase 11A Voltage-dependent L-type calcium channel subunit alpha-1S Cholinesterase Short transient receptor potential channel 4 Sodium/bile acid cotransporter Aldo-keto reductase family 1 member C3 Solute carrier organic anion transporter family member 2A1 Calcium/calmodulin-dependent protein kinase type II subunit gamma Cytochrome P450 3A5 Vitamin K epoxide reductase complex subunit 1 Solute carrier family 22 member 2 Discoidin domain-containing receptor 2 Platelet-derived growth factor receptor beta C-C chemokine receptor type 4 Lysophosphatidic acid receptor 2 Ribonucleoside-diphosphate reductase subunit M2 Lysophosphatidic acid receptor 1 Serine/threonine-protein kinase 24 Cytochrome P450 2J2 Steroid 17-alpha-hydroxylase/17,20 lyase Aromatic-L-amino-acid decarboxylase Nuclear receptor subfamily 2 group C member 2 Thymidylate synthase Neutrophil elastase Parathyroid hormone/parathyroid hormone-related peptide receptor Voltage-dependent L-type calcium channel subunit alpha-1C Retinoic acid receptor RXR-beta Cytochrome P450 1B1 Tyrosine-protein kinase BTK Motilin receptor Carbonic anhydrase 13 Programmed cell death 1 ligand 1 Inosine-5'-monophosphate dehydrogenase 2 Type-1 angiotensin II receptor Inosine-5'-monophosphate dehydrogenase 1 Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1 P2X purinoceptor 1 Parathyroid hormone 2 receptor Cytoplasmic tyrosine-protein kinase BMX G-protein coupled receptor family C group 6 member A Follicle-stimulating hormone receptor Adenosine deaminase Potassium channel subfamily K member 12 Thyroid peroxidase Carbonic anhydrase 14 Carbonic anhydrase 7 Multidrug and toxin extrusion protein 2 Inward rectifier potassium channel 13 ATP-sensitive inward rectifier potassium channel 11 DNA topoisomerase 2-alpha Serine/threonine-protein kinase 10 Solute carrier family 22 member 6 Lysine-specific histone demethylase 1A Lysophosphatidic acid receptor 6 Lysophosphatidic acid receptor 5 Xanthine dehydrogenase/oxidase Cation channel sperm-associated protein 2 Tyrosine-protein kinase FRK Sodium channel protein type 4 subunit alpha Trifunctional purine biosynthetic protein adenosine-3 Ryanodine receptor 1 Brain-specific angiogenesis inhibitor 1 Chromaffin granule amine transporter Ribonucleoside-diphosphate reductase large subunit Ryanodine receptor 3 Ceramide glucosyltransferase Fibroblast growth factor receptor 3 Fibroblast growth factor receptor 2 Proteinase-activated receptor 1 Fibroblast growth factor receptor 1 Toll-like receptor 4 Cytochrome P450 2D6 Vascular endothelial growth factor receptor 3 Tryptase alpha/beta-1 Adhesion G protein-coupled receptor G3 Sodium/hydrogen exchanger 5 Proton-coupled folate transporter Potassium voltage-gated channel subfamily D member 2 Mas-related G-protein coupled receptor member X1 Acid-sensing ion channel 2 Potassium voltage-gated channel subfamily D member 3 Cytochrome P450 11B1, mitochondrial Ryanodine receptor 2 Membrane primary amine oxidase Cytochrome P450 2B6 Synaptic vesicular amine transporter Cytochrome P450 2C8 C-X-C chemokine receptor type 4 Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 Calcium/calmodulin-dependent protein kinase type 1D Lysosomal protective protein Retinoic acid receptor RXR-gamma Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 3 Thymidylate synthase Serine/threonine-protein kinase PLK4 Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 4 Prostacyclin receptor Multidrug and toxin extrusion protein 2 Arachidonate 5-lipoxygenase Niemann-Pick C1-like protein 1 Sodium-coupled monocarboxylate transporter 1 Cation channel sperm-associated protein 1 Transient receptor potential cation channel subfamily V member 5 G-protein coupled receptor 143 Probable G-protein coupled receptor 139 Antithrombin-III Peptidyl-prolyl cis-trans isomerase A Solute carrier organic anion transporter family member 3A1 Atypical chemokine receptor 3 Retinoic acid receptor beta Tyrosine-protein kinase Fyn ATP-sensitive inward rectifier potassium channel 10 Pancreatic triacylglycerol lipase High affinity cAMP-specific and IBMX-insensitive 3',5'-cyclic phosphodiesterase 8B RAF proto-oncogene serine/threonine-protein kinase Potassium voltage-gated channel subfamily KQT member 1 Chloride channel protein 1 Voltage-dependent L-type calcium channel subunit alpha-1D Trypsin-1 Muscarinic acetylcholine receptor M2 Cysteinyl leukotriene receptor 1 Metabotropic glutamate receptor 5 Phosphatidylinositol 4-kinase type 2-alpha High affinity cAMP-specific and IBMX-insensitive 3',5'-cyclic phosphodiesterase 8A Equilibrative nucleoside transporter 4 ATP-binding cassette sub-family G member 2 Retinoic acid receptor RXR-alpha Catechol O-methyltransferase
Min number of chemical substances or nutrients communicate with Fibroblast growth factor receptor 2, D(2) dopamine receptor and Retinoic acid receptor alpha
Fibroblast growth factor receptor 2 D(2) dopamine receptor Retinoic acid receptor alpha
action argmin
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
[[{'concept': 'chemical substance'}, {'concept': 'nutrient'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?y WHERE { { SELECT DISTINCT ( MIN ( ?u ) AS ?b ) { SELECT DISTINCT ( COUNT ( ?z ) AS ?u ) ?j WHERE { ?z rdf:type ?d . VALUES ( ?d ) { ( ontology:nutrient ) ( ontology:chemical_substance ) } } GROUP BY ?j } } . FILTER ( ?e = ?b ) . { SELECT DISTINCT ( COUNT ( ?o ) AS ?e ) ?y WHERE { { ?o property:physically_interacts_with ?y . ?o rdf:type ontology:chemical_substance . ?y rdf:type ontology:nutrient } UNION { ?o property:physically_interacts_with ?y . ?y rdf:type ontology:nutrient . ?o rdf:type ontology:nutrient } } GROUP BY ?y } }
[]
Clarification
Simple Question|Single Entity|Indirect
Q15335226
P682
Q2996394
USER
Which biological processes are that nutrient involved in ?
(Q15335226,P682,c(Q2996394))
action filter_type
action find
entity Q15335226
relation P682
type Q2996394
['Q15335226', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?s WHERE { resource:Q15335226 property:P682 ?s . ?s rdf:type ontology:Q2996394 }
D(2) dopamine receptor
action filter_type
action find
entity D(2) dopamine receptor
relation biological process
type biological process
['D(2) dopamine receptor', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?s WHERE { resource:D(2)_dopamine_receptor property:biological_process ?s . ?s rdf:type ontology:biological_process }
[]
biological process
Clarification for simple ques.
Q254943
SYSTEM
Did you mean Retinoic acid receptor alpha ?
Q5446456 Q15335226 Q254943
(Q5446456,P682,c(Q2996394)) (Q15335226,P682,c(Q2996394)) (Q254943,P682,c(Q2996394))
[ANSWER]
['Q5446456', 'P682', {'concept': 'Q2996394'}] ['Q15335226', 'P682', {'concept': 'Q2996394'}] ['Q254943', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?s WHERE { resource:Q15335226 property:P682 ?s . ?s rdf:type ontology:Q2996394 }
Fibroblast growth factor receptor 2 D(2) dopamine receptor Retinoic acid receptor alpha
Did you mean Retinoic acid receptor alpha ?
Retinoic acid receptor alpha
['Fibroblast growth factor receptor 2', 'biological process', {'concept': 'biological process'}] ['D(2) dopamine receptor', 'biological process', {'concept': 'biological process'}] ['Retinoic acid receptor alpha', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?s WHERE { resource:D(2)_dopamine_receptor property:biological_process ?s . ?s rdf:type ontology:biological_process }
[]
Simple Question (Coreferenced)
USER
No, I meant D(2) dopamine receptor. Could you tell me the answer for that?
(Q15335226,P682,c(Q2996394))
Q15335226
['Q15335226', 'P682', {'concept': 'Q2996394'}]
['D(2) dopamine receptor', 'biological process', {'concept': 'biological process'}]
[]
Q14819856 Q14863538 Q14864443
SYSTEM
feeding behavior, pigmentation, response to inactivity
Q14819856 Q14863538 Q14864443 Q14645719
(Q15335226,P682,c(Q2996394))
action filter_type
action find
entity Q15335226
relation P682
type Q2996394
That nutrient are the [ANSWERS]
['Q15335226', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?s WHERE { resource:Q15335226 property:P682 ?s . ?s rdf:type ontology:Q2996394 }
feeding behavior pigmentation response to inactivity locomotory behavior
That nutrient are the feeding behavior, pigmentation and response to inactivity
feeding behavior pigmentation response to inactivity
action filter_type
action find
entity D(2) dopamine receptor
relation biological process
type biological process
['D(2) dopamine receptor', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?s WHERE { resource:D(2)_dopamine_receptor property:biological_process ?s . ?s rdf:type ontology:biological_process }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q79927
P361
Q5058355
USER
What is a part of endoplasmic reticulum ?
(c(Q5058355),P361,Q79927)
action filter_type
action find_reverse
entity Q79927
relation P361
type Q5058355
[{'concept': 'Q5058355'}, 'P361', 'Q79927']
SELECT DISTINCT ?e WHERE { ?e property:P361 resource:Q79927 . ?e rdf:type ontology:Q5058355 }
endoplasmic reticulum
action filter_type
action find_reverse
entity endoplasmic reticulum
relation part of
type cellular component
[{'concept': 'cellular component'}, 'part of', 'endoplasmic reticulum']
SELECT DISTINCT ?e WHERE { ?e property:part_of resource:endoplasmic_reticulum . ?e rdf:type ontology:cellular_component }
[]
cellular component
Q21107992
SYSTEM
ER ubiquitin ligase complex
Q21107992
(c(Q5058355),P361,Q79927)
action filter_type
action find_reverse
entity Q79927
relation P361
type Q5058355
A part of endoplasmic reticulum is the [ANSWER]
[{'concept': 'Q5058355'}, 'P361', 'Q79927']
SELECT DISTINCT ?e WHERE { ?e property:P361 resource:Q79927 . ?e rdf:type ontology:Q5058355 }
ER ubiquitin ligase complex
A part of endoplasmic reticulum is the ER ubiquitin ligase complex
ER ubiquitin ligase complex
action filter_type
action find_reverse
entity endoplasmic reticulum
relation part of
type cellular component
[{'concept': 'cellular component'}, 'part of', 'endoplasmic reticulum']
SELECT DISTINCT ?e WHERE { ?e property:part_of resource:endoplasmic_reticulum . ?e rdf:type ontology:cellular_component }
[]
Verification (Boolean) (All)
Verification|3 entities, 2 direct, 2(direct) are query entities, subject is indirect
Q21107992 Q14864171 Q22328946
P361
Q5058355
USER
Is that cellular component a component of cell periphery and perisynaptic space ?
(Q21107992,P361,Q14864171) (Q21107992,P361,Q22328946)
action is_in
entity Q21107992
action intersection
action find_reverse
entity Q14864171
relation P361
action find_reverse
entity Q22328946
relation P361
['Q21107992', 'P361', 'Q14864171'] ['Q21107992', 'P361', 'Q22328946']
ASK WHERE { resource:Q21107992 property:P361 resource:Q14864171 . resource:Q21107992 property:P361 resource:Q22328946 }
ER ubiquitin ligase complex cell periphery perisynaptic space
action is_in
entity ER ubiquitin ligase complex
action intersection
action find_reverse
entity cell periphery
relation part of
action find_reverse
entity perisynaptic space
relation part of
['ER ubiquitin ligase complex', 'part of', 'cell periphery'] ['ER ubiquitin ligase complex', 'part of', 'perisynaptic space']
ASK WHERE { resource:ER_ubiquitin_ligase_complex property:part_of resource:cell_periphery . resource:ER_ubiquitin_ligase_complex property:part_of resource:perisynaptic_space }
[]
cellular component
SYSTEM
NO
(Q21107992,P361,Q14864171) (Q21107992,P361,Q22328946)
action is_in
entity Q21107992
action intersection
action find_reverse
entity Q14864171
relation P361
action find_reverse
entity Q22328946
relation P361
[ANSWER]
['Q21107992', 'P361', 'Q14864171'] ['Q21107992', 'P361', 'Q22328946']
ASK WHERE { resource:Q21107992 property:P361 resource:Q14864171 . resource:Q21107992 property:P361 resource:Q22328946 }
No
action is_in
entity ER ubiquitin ligase complex
action intersection
action find_reverse
entity cell periphery
relation part of
action find_reverse
entity perisynaptic space
relation part of
['ER ubiquitin ligase complex', 'part of', 'cell periphery'] ['ER ubiquitin ligase complex', 'part of', 'perisynaptic space']
ASK WHERE { resource:ER_ubiquitin_ligase_complex property:part_of resource:cell_periphery . resource:ER_ubiquitin_ligase_complex property:part_of resource:perisynaptic_space }
[]