Simple Question (Direct)
Simple Question
Q21599786
P702
Q863908
USER
Which nucleic acid sequence encodes ATP synthase F0F1 subunit A    BU002 ?
(Q21599786,P702,c(Q863908))
action filter_type
action find
entity Q21599786
relation P702
type Q863908
['Q21599786', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?g WHERE { resource:Q21599786 property:P702 ?g . ?g rdf:type ontology:Q863908 }
ATP synthase F0F1 subunit A    BU002
action filter_type
action find
entity ATP synthase F0F1 subunit A    BU002
relation encoded by
type nucleic acid sequence
['ATP synthase F0F1 subunit A    BU002', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?g WHERE { resource:ATP_synthase_F0F1_subunit_A____BU002 property:encoded_by ?g . ?g rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q21599191
SYSTEM
ATP synthase F0F1 subunit A    BU002
Q21599191
(Q21599786,P702,c(Q863908))
action filter_type
action find
entity Q21599786
relation P702
type Q863908
ATP synthase F0F1 subunit A BU002 encodes ATP synthase F0F1 subunit A BU002
['Q21599786', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?g WHERE { resource:Q21599786 property:P702 ?g . ?g rdf:type ontology:Q863908 }
ATP synthase F0F1 subunit A    BU002
ATP synthase F0F1 subunit A BU002 encodes ATP synthase F0F1 subunit A BU002
ATP synthase F0F1 subunit A    BU002
action filter_type
action find
entity ATP synthase F0F1 subunit A    BU002
relation encoded by
type nucleic acid sequence
['ATP synthase F0F1 subunit A    BU002', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?g WHERE { resource:ATP_synthase_F0F1_subunit_A____BU002 property:encoded_by ?g . ?g rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21599786
P681
Q5058355
USER
What is a component of ATP synthase F0F1 subunit A    BU002 ?
(Q21599786,P681,c(Q5058355))
action filter_type
action find
entity Q21599786
relation P681
type Q5058355
['Q21599786', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?w WHERE { resource:Q21599786 property:P681 ?w . ?w rdf:type ontology:Q5058355 }
ATP synthase F0F1 subunit A    BU002
action filter_type
action find
entity ATP synthase F0F1 subunit A    BU002
relation cell component
type cellular component
['ATP synthase F0F1 subunit A    BU002', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?w WHERE { resource:ATP_synthase_F0F1_subunit_A____BU002 property:cell_component ?w . ?w rdf:type ontology:cellular_component }
[]
cellular component
Q29548
SYSTEM
plasma membrane
Q29548
(Q21599786,P681,c(Q5058355))
action filter_type
action find
entity Q21599786
relation P681
type Q5058355
A component of ATP synthase F0 F1 subunit A BU002 is the [ANSWER]
['Q21599786', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?w WHERE { resource:Q21599786 property:P681 ?w . ?w rdf:type ontology:Q5058355 }
plasma membrane
A component of ATP synthase F0 F1 subunit A BU002 is the plasma membrane
plasma membrane
action filter_type
action find
entity ATP synthase F0F1 subunit A    BU002
relation cell component
type cellular component
['ATP synthase F0F1 subunit A    BU002', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?w WHERE { resource:ATP_synthase_F0F1_subunit_A____BU002 property:cell_component ?w . ?w rdf:type ontology:cellular_component }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q21154944
Q5058355
USER
And how about Flap endonuclease 1?
(Q21154944,P681,c(Q5058355))
action filter_type
action find
entity Q21154944
relation P681
type Q5058355
['Q21154944', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?h WHERE { resource:Q21154944 property:P681 ?h . ?h rdf:type ontology:Q5058355 }
Flap endonuclease 1
action filter_type
action find
entity Flap endonuclease 1
relation cell component
type cellular component
['Flap endonuclease 1', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?h WHERE { resource:Flap_endonuclease_1 property:cell_component ?h . ?h rdf:type ontology:cellular_component }
[]
cellular component
Q420927 Q29548
SYSTEM
protein complex, plasma membrane
Q420927 Q29548
(Q21154944,P681,c(Q5058355))
action filter_type
action find
entity Q21154944
relation P681
type Q5058355
[ANSWERS]
['Q21154944', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?h WHERE { resource:Q21154944 property:P681 ?h . ?h rdf:type ontology:Q5058355 }
protein complex plasma membrane
protein complex plasma membrane
action filter_type
action find
entity Flap endonuclease 1
relation cell component
type cellular component
['Flap endonuclease 1', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?h WHERE { resource:Flap_endonuclease_1 property:cell_component ?h . ?h rdf:type ontology:cellular_component }
[]
Verification (Boolean) (All)
Verification|one entity, multiple entities (as object) referred indirectly
Q24097535
P681
Q181394
USER
Do transglycosylase associated protein    XCC4044 have those ones as their cell component ?
(Q24097535,P681,Q420927) (Q24097535,P681,Q29548)
action is_in
entity prev_answer
action find
entity Q24097535
relation P681
['Q24097535', 'P681', 'Q420927'] ['Q24097535', 'P681', 'Q29548']
ASK WHERE { VALUES ( ?o ) { ( resource:Q420927 ) ( resource:Q29548 ) } . resource:Q24097535 property:P681 ?o }
transglycosylase associated protein    XCC4044
action is_in
entity prev_answer
action find
entity transglycosylase associated protein    XCC4044
relation cell component
['transglycosylase associated protein    XCC4044', 'cell component', 'protein complex'] ['transglycosylase associated protein    XCC4044', 'cell component', 'plasma membrane']
ASK WHERE { VALUES ( ?o ) { ( resource:protein_complex ) ( resource:plasma_membrane ) } . resource:transglycosylase_associated_protein____XCC4044 property:cell_component ?o }
[]
nutrient
SYSTEM
NO
(Q24097535,P681,Q420927) (Q24097535,P681,Q29548)
action is_in
entity prev_answer
action find
entity Q24097535
relation P681
[ANSWER]
['Q24097535', 'P681', 'Q420927'] ['Q24097535', 'P681', 'Q29548']
ASK WHERE { VALUES ( ?o ) { ( resource:Q420927 ) ( resource:Q29548 ) } . resource:Q24097535 property:P681 ?o }
No
action is_in
entity prev_answer
action find
entity transglycosylase associated protein    XCC4044
relation cell component
['transglycosylase associated protein    XCC4044', 'cell component', 'protein complex'] ['transglycosylase associated protein    XCC4044', 'cell component', 'plasma membrane']
ASK WHERE { VALUES ( ?o ) { ( resource:protein_complex ) ( resource:plasma_membrane ) } . resource:transglycosylase_associated_protein____XCC4044 property:cell_component ?o }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Single entity type
Q22329854
P361
Q5058355 Q5058355
USER
How many cellular components are a component of greater number of cellular components than virus tail, sheath ?
(c(Q5058355),P361,c(Q5058355))
action count
action greater
action find_tuple_counts
relation P361
type Q5058355
type Q5058355
action count
action filter_type
action find
entity Q22329854
relation P361
type Q5058355
[{'concept': 'Q5058355'}, 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?q ) WHERE { { SELECT DISTINCT ?y ( COUNT ( ?c ) AS ?j ) WHERE { ?y property:P361 ?c . ?y rdf:type ontology:Q5058355 . ?c rdf:type ontology:Q5058355 } GROUP BY ?y } . { SELECT DISTINCT ( COUNT ( ?h ) AS ?f ) WHERE { ?h rdf:type ontology:Q5058355 . resource:Q22329854 property:P361 ?h } } . FILTER ( ?j > ?f ) }
virus tail, sheath
action count
action greater
action find_tuple_counts
relation part of
type cellular component
type cellular component
action count
action filter_type
action find
entity virus tail, sheath
relation part of
type cellular component
[{'concept': 'cellular component'}, 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?q ) WHERE { { SELECT DISTINCT ?y ( COUNT ( ?c ) AS ?j ) WHERE { ?y property:part_of ?c . ?y rdf:type ontology:cellular_component . ?c rdf:type ontology:cellular_component } GROUP BY ?y } . { SELECT DISTINCT ( COUNT ( ?h ) AS ?f ) WHERE { ?h rdf:type ontology:cellular_component . resource:virus_tail,_sheath property:part_of ?h } } . FILTER ( ?j > ?f ) }
[]
cellular component cellular component
SYSTEM
6
Q22329451 Q21107992 Q22329159 Q22327531 Q22327518 Q29548
(c(Q5058355),P361,c(Q5058355))
action count
action greater
action find_tuple_counts
relation P361
type Q5058355
type Q5058355
action count
action filter_type
action find
entity Q22329854
relation P361
type Q5058355
[ANSWER]
[{'concept': 'Q5058355'}, 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?q ) WHERE { { SELECT DISTINCT ?y ( COUNT ( ?c ) AS ?j ) WHERE { ?y property:P361 ?c . ?y rdf:type ontology:Q5058355 . ?c rdf:type ontology:Q5058355 } GROUP BY ?y } . { SELECT DISTINCT ( COUNT ( ?h ) AS ?f ) WHERE { ?h rdf:type ontology:Q5058355 . resource:Q22329854 property:P361 ?h } } . FILTER ( ?j > ?f ) }
basolateral part of cell ER ubiquitin ligase complex ventral disc microtubule array clathrin coat of synaptic vesicle plasma membrane region plasma membrane
6
action count
action greater
action find_tuple_counts
relation part of
type cellular component
type cellular component
action count
action filter_type
action find
entity virus tail, sheath
relation part of
type cellular component
[{'concept': 'cellular component'}, 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?q ) WHERE { { SELECT DISTINCT ?y ( COUNT ( ?c ) AS ?j ) WHERE { ?y property:part_of ?c . ?y rdf:type ontology:cellular_component . ?c rdf:type ontology:cellular_component } GROUP BY ?y } . { SELECT DISTINCT ( COUNT ( ?h ) AS ?f ) WHERE { ?h rdf:type ontology:cellular_component . resource:virus_tail,_sheath property:part_of ?h } } . FILTER ( ?j > ?f ) }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Single entity type|Incomplete
Q22326089
P361
Q5058355 Q5058355
USER
And how about contractile fiber part?
(c(Q5058355),P361,c(Q5058355))
action count
action greater
action find_tuple_counts
relation P361
type Q5058355
type Q5058355
action count
action filter_type
action find
entity Q22326089
relation P361
type Q5058355
[{'concept': 'Q5058355'}, 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ( COUNT ( ?w ) AS ?h ) WHERE { { SELECT DISTINCT ?w ( COUNT ( ?a ) AS ?s ) WHERE { ?w property:P361 ?a . ?w rdf:type ontology:Q5058355 . ?a rdf:type ontology:Q5058355 } GROUP BY ?w } . FILTER ( ?s > ?i ) . { SELECT DISTINCT ( COUNT ( ?u ) AS ?i ) WHERE { resource:Q22326089 property:P361 ?u . ?u rdf:type ontology:Q5058355 } } }
contractile fiber part
action count
action greater
action find_tuple_counts
relation part of
type cellular component
type cellular component
action count
action filter_type
action find
entity contractile fiber part
relation part of
type cellular component
[{'concept': 'cellular component'}, 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ( COUNT ( ?w ) AS ?h ) WHERE { { SELECT DISTINCT ?w ( COUNT ( ?a ) AS ?s ) WHERE { ?w property:part_of ?a . ?w rdf:type ontology:cellular_component . ?a rdf:type ontology:cellular_component } GROUP BY ?w } . FILTER ( ?s > ?i ) . { SELECT DISTINCT ( COUNT ( ?u ) AS ?i ) WHERE { resource:contractile_fiber_part property:part_of ?u . ?u rdf:type ontology:cellular_component } } }
[]
cellular component cellular component
SYSTEM
142
Q22329451 Q22327293 Q14329032 Q22327448 Q21116315 Q14876131 Q14878067 Q22327403 Q14864977 Q22327994 Q22327995 Q22327623 Q22327621 Q21116899 Q14860843 Q22327688 Q22327687 Q22327473 Q22329449 Q22327447 Q26253880 Q24576568 Q24576567 Q22330482 Q22325973 Q21107992 Q671136 Q22326873 Q21469807 Q22325381 Q24576572 Q22327513 Q22325480 Q21120634 Q3824358 Q22329021 Q21120639 Q22328085 Q22328655 Q22329861 Q22329866 Q22329864 Q22330033 Q22328495 Q22326802 Q22329161 Q22329160 Q22327284 Q22330462 Q22327411 Q22327413 Q22327412 Q22327419 Q22329158 Q22329159 Q21109092 Q14864382 Q22329157 Q22329857 Q22329856 Q22329855 Q22329854 Q22329852 Q24570696 Q22326943 Q21136996 Q22329858 Q14906187 Q22327494 Q22327529 Q22327407 Q22327654 Q22327653 Q22327524 Q22329849 Q22329847 Q21971414 Q21095089 Q22327498 Q22330052 Q22330059 Q22327493 Q22325375 Q24576587 Q21108411 Q22325981 Q21104759 Q21484280 Q22329402 Q22327531 Q24570673 Q22328769 Q14877492 Q22328074 Q14901717 Q22330234 Q22330236 Q22330238 Q14819441 Q21108403 Q14330626 Q22328839 Q24576590 Q24576591 Q21105674 Q22327509 Q21468808 Q14863683 Q22327505 Q22327502 Q22327501 Q22327500 Q24570705 Q14864390 Q14330629 Q21971286 Q21105988 Q21095308 Q22330225 Q22326845 Q22326843 Q79927 Q14876059 Q22327647 Q22327510 Q22327511 Q21112489 Q22327517 Q22327518 Q22329403 Q26253890 Q29548 Q22328584 Q22327343 Q22327474 Q14860540 Q1640852 Q22327421 Q21115425 Q22328601 Q22327390 Q21095620
(c(Q5058355),P361,c(Q5058355))
action count
action greater
action find_tuple_counts
relation P361
type Q5058355
type Q5058355
action count
action filter_type
action find
entity Q22326089
relation P361
type Q5058355
[ANSWER]
[{'concept': 'Q5058355'}, 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ( COUNT ( ?w ) AS ?h ) WHERE { { SELECT DISTINCT ?w ( COUNT ( ?a ) AS ?s ) WHERE { ?w property:P361 ?a . ?w rdf:type ontology:Q5058355 . ?a rdf:type ontology:Q5058355 } GROUP BY ?w } . FILTER ( ?s > ?i ) . { SELECT DISTINCT ( COUNT ( ?u ) AS ?i ) WHERE { resource:Q22326089 property:P361 ?u . ?u rdf:type ontology:Q5058355 } } }
basolateral part of cell ciliary part endoplasmic reticulum membrane interleukin-35 complex viral nucleocapsid compact myelin organelle membrane PTEX complex plasma membrane part rhoptry rhoptry membrane lumenal side of membrane leaflet of membrane bilayer complement component C1 complex nuclear outer membrane prospore membrane leading edge prospore membrane spindle pole body attachment site intrinsic component of organelle membrane lateral shield interleukin-27 complex extrinsic component of postsynaptic endosome membrane extracellular matrix of synaptic cleft perisynaptic extracellular matrix ventral disc supernumerary microtubule array larval serum protein complex ER ubiquitin ligase complex synaptic vesicle cell division site part dolichyl-phosphate-mannose-protein mannosyltransferase complex HU-DNA complex presynaptic endosome membrane postsynaptic specialization extracellular matrix component interleukin-12 complex intracellular apical complex interleukin-23 complex external encapsulating structure cell septum part viral capsid, decoration virus tail, major subunit virus tail, minor subunit capsomere spitzenkorper endoplasmic reticulum palmitoyltransferase complex ventral disc lateral crest ventral disc overlap zone cell projection part longitudinal side of cell surface extracellular space of host extrahaustorial matrix extra-invasive hyphal space inhibin complex ventral disc dorsal microribbon ventral disc microtubule array nuclear outer membrane-endoplasmic reticulum membrane network presynaptic active zone ventral disc crossbridge virus tail, fiber virus tail, baseplate virus tail, tube virus tail, sheath virus tail, shaft extrinsic component of spine apparatus membrane fatty acid elongase complex immunoglobulin complex, circulating virus tail, tip CRLF-CLCF1 complex postsynaptic endosome presynaptic grid activin complex annulate lamellae membrane region presynaptic active zone dense projection icosahedral viral capsid, collar fiber icosahedral viral capsid, neck fiber plasma lipoprotein particle blood microparticle postsynaptic endocytic zone dinoflagellate antapex cell surface furrow extrinsic component of synaptic vesicle membrane IHF-DNA complex intrinsic component of postsynaptic endosome membrane CNTFR-CLCF1 complex classical-complement-pathway C3/C5 convertase complex perinuclear endoplasmic reticulum membrane retromer, cargo-selective complex inner membrane complex clathrin coat of synaptic vesicle postsynaptic endosome membrane viral portal complex lateral loop rhoptry lumen intracellular part basal ring of apical complex dinoflagellate apex polar ring of apical complex fibrinogen complex synaptic vesicle lumen myelin sheath abaxonal region viral scaffold intrinsic component of presynaptic endosome membrane intrinsic component of spine apparatus membrane Nem1-Spo7 phosphatase complex postsynaptic cytosol retromer, tubulation complex insulin-like growth factor binding protein complex presynaptic endosome presynaptic active zone cytoplasmic component presynaptic endocytic zone cytoplasmic component presynaptic endocytic zone postsynaptic endocytic zone cytoplasmic component synaptic vesicle membrane myelin sheath adaxonal region oligosaccharyltransferase complex stereocilium membrane retromer complex rhoptry neck intracellular organelle part Dsc E3 ubiquitin ligase complex endoplasmic reticulum phosphatidylinositol 3-kinase complex external encapsulating structure part presynaptic cytosol postsynaptic cytoskeleton stereocilium tip presynaptic cytoskeleton plasma membrane region basal labyrinth extrinsic component of presynaptic endosome membrane plasma membrane Kibra-Ex-Mer complex plasma membrane-derived photosystem I intrinsic component of synaptic vesicle membrane clathrin-coated pit Schmidt-Lanterman incisure bursicon neuropeptide hormone complex Ire1 complex H-NS complex symbiont-containing vacuolar membrane network Flemming body
142
action count
action greater
action find_tuple_counts
relation part of
type cellular component
type cellular component
action count
action filter_type
action find
entity contractile fiber part
relation part of
type cellular component
[{'concept': 'cellular component'}, 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ( COUNT ( ?w ) AS ?h ) WHERE { { SELECT DISTINCT ?w ( COUNT ( ?a ) AS ?s ) WHERE { ?w property:part_of ?a . ?w rdf:type ontology:cellular_component . ?a rdf:type ontology:cellular_component } GROUP BY ?w } . FILTER ( ?s > ?i ) . { SELECT DISTINCT ( COUNT ( ?u ) AS ?i ) WHERE { resource:contractile_fiber_part property:part_of ?u . ?u rdf:type ontology:cellular_component } } }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23080512 Q21599191
P702
Q181394
USER
Which nutrients are the gene that are encoded by ATP synthase F0F1 subunit A    BU002 or F0F1 ATP synthase subuni gamma    ECL_05148 ?
OR((c(Q181394),P702,Q21599191), (c(Q181394),P702,Q23080512))
action filter_type
action union
action find_reverse
entity Q21599191
relation P702
action find_reverse
entity Q23080512
relation P702
type Q181394
{'OR': [[{'concept': 'Q181394'}, 'P702', 'Q21599191'], [{'concept': 'Q181394'}, 'P702', 'Q23080512']]}
SELECT DISTINCT ?k WHERE { { { ?k property:P702 resource:Q21599191 } UNION { ?k property:P702 resource:Q23080512 } } . ?k rdf:type ontology:Q181394 }
F0F1 ATP synthase subuni gamma    ECL_05148 ATP synthase F0F1 subunit A    BU002
action filter_type
action union
action find_reverse
entity ATP synthase F0F1 subunit A    BU002
relation encoded by
action find_reverse
entity F0F1 ATP synthase subuni gamma    ECL_05148
relation encoded by
type nutrient
{'OR': [[{'concept': 'nutrient'}, 'encoded by', 'ATP synthase F0F1 subunit A    BU002'], [{'concept': 'nutrient'}, 'encoded by', 'F0F1 ATP synthase subuni gamma    ECL_05148']]}
SELECT DISTINCT ?k WHERE { { { ?k property:encoded_by resource:ATP_synthase_F0F1_subunit_A____BU002 } UNION { ?k property:encoded_by resource:F0F1_ATP_synthase_subuni_gamma____ECL_05148 } } . ?k rdf:type ontology:nutrient }
[]
nutrient
Q24132621 Q21599786
SYSTEM
F0F1 ATP synthase subuni gamma    ECL_05148, ATP synthase F0F1 subunit A    BU002
Q24132621 Q21599786
OR((c(Q181394),P702,Q21599191), (c(Q181394),P702,Q23080512))
action filter_type
action union
action find_reverse
entity Q21599191
relation P702
action find_reverse
entity Q23080512
relation P702
type Q181394
[ANSWERS]
{'OR': [[{'concept': 'Q181394'}, 'P702', 'Q21599191'], [{'concept': 'Q181394'}, 'P702', 'Q23080512']]}
SELECT DISTINCT ?k WHERE { { { ?k property:P702 resource:Q21599191 } UNION { ?k property:P702 resource:Q23080512 } } . ?k rdf:type ontology:Q181394 }
F0F1 ATP synthase subuni gamma    ECL_05148 ATP synthase F0F1 subunit A    BU002
And F0F1 ATP synthase subuni gamma ECL 05148 and ATP synthase F0F1 subunit A BU002 are the gene that are encoded by ATP synthase F0F1 subunit A BU002 or F0F1 ATP synthase subuni gamma ECL_05148
F0F1 ATP synthase subuni gamma    ECL_05148 ATP synthase F0F1 subunit A    BU002
action filter_type
action union
action find_reverse
entity ATP synthase F0F1 subunit A    BU002
relation encoded by
action find_reverse
entity F0F1 ATP synthase subuni gamma    ECL_05148
relation encoded by
type nutrient
{'OR': [[{'concept': 'nutrient'}, 'encoded by', 'ATP synthase F0F1 subunit A    BU002'], [{'concept': 'nutrient'}, 'encoded by', 'F0F1 ATP synthase subuni gamma    ECL_05148']]}
SELECT DISTINCT ?k WHERE { { { ?k property:encoded_by resource:ATP_synthase_F0F1_subunit_A____BU002 } UNION { ?k property:encoded_by resource:F0F1_ATP_synthase_subuni_gamma____ECL_05148 } } . ?k rdf:type ontology:nutrient }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type
Q23080512
P703
Q631147
USER
How many infraspecific names are the taxon to which F0F1 ATP synthase subuni gamma    ECL_05148 belongs to ?
(Q23080512,P703,c(Q631147))
action count
action filter_type
action find
entity Q23080512
relation P703
type Q631147
['Q23080512', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ( COUNT ( ?n ) AS ?y ) WHERE { ?n rdf:type ontology:Q631147 . resource:Q23080512 property:P703 ?n }
F0F1 ATP synthase subuni gamma    ECL_05148
action count
action filter_type
action find
entity F0F1 ATP synthase subuni gamma    ECL_05148
relation found in taxon
type infraspecific name
['F0F1 ATP synthase subuni gamma    ECL_05148', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ( COUNT ( ?n ) AS ?y ) WHERE { ?n rdf:type ontology:infraspecific_name . resource:F0F1_ATP_synthase_subuni_gamma____ECL_05148 property:found_in_taxon ?n }
[]
infraspecific name
SYSTEM
1
Q21102928
(Q23080512,P703,c(Q631147))
action count
action filter_type
action find
entity Q23080512
relation P703
type Q631147
[ANSWER]
['Q23080512', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ( COUNT ( ?n ) AS ?y ) WHERE { ?n rdf:type ontology:Q631147 . resource:Q23080512 property:P703 ?n }
Enterobacter cloacae subsp. cloacae ATCC 13047
1
action count
action filter_type
action find
entity F0F1 ATP synthase subuni gamma    ECL_05148
relation found in taxon
type infraspecific name
['F0F1 ATP synthase subuni gamma    ECL_05148', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ( COUNT ( ?n ) AS ?y ) WHERE { ?n rdf:type ontology:infraspecific_name . resource:F0F1_ATP_synthase_subuni_gamma____ECL_05148 property:found_in_taxon ?n }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type|Incomplete
Q24139778
P703
Q631147
USER
And also tell me about D-arabinose 5-phosphate isomerase    b3197?
(Q24139778,P703,c(Q631147))
action count
action filter_type
action find
entity Q24139778
relation P703
type Q631147
['Q24139778', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?b ) WHERE { resource:Q24139778 property:P703 ?z . ?z rdf:type ontology:Q631147 }
D-arabinose 5-phosphate isomerase    b3197
action count
action filter_type
action find
entity D-arabinose 5-phosphate isomerase    b3197
relation found in taxon
type infraspecific name
['D-arabinose 5-phosphate isomerase    b3197', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?b ) WHERE { resource:D-arabinose_5-phosphate_isomerase____b3197 property:found_in_taxon ?z . ?z rdf:type ontology:infraspecific_name }
[]
infraspecific name
SYSTEM
1
Q21102938
(Q24139778,P703,c(Q631147))
action count
action filter_type
action find
entity Q24139778
relation P703
type Q631147
[ANSWER]
['Q24139778', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?b ) WHERE { resource:Q24139778 property:P703 ?z . ?z rdf:type ontology:Q631147 }
Escherichia coli str. K-12 substr. MG1655
1
action count
action filter_type
action find
entity D-arabinose 5-phosphate isomerase    b3197
relation found in taxon
type infraspecific name
['D-arabinose 5-phosphate isomerase    b3197', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?b ) WHERE { resource:D-arabinose_5-phosphate_isomerase____b3197 property:found_in_taxon ?z . ?z rdf:type ontology:infraspecific_name }
[]
Quantitative Reasoning (Count) (All)
Incomplete count-based ques
Q24121551
Q631147
USER
And how about hypothetical protein    BN117_2929?
(Q24121551,P703,c(Q631147))
action count
action filter_type
action find
entity Q24121551
relation P703
type Q631147
['Q24121551', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ( COUNT ( ?v ) AS ?f ) WHERE { resource:Q24121551 property:P703 ?v . ?v rdf:type ontology:Q631147 }
hypothetical protein    BN117_2929
action count
action filter_type
action find
entity hypothetical protein    BN117_2929
relation found in taxon
type infraspecific name
['hypothetical protein    BN117_2929', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ( COUNT ( ?v ) AS ?f ) WHERE { resource:hypothetical_protein____BN117_2929 property:found_in_taxon ?v . ?v rdf:type ontology:infraspecific_name }
[]
infraspecific name
SYSTEM
1
(Q24121551,P703,c(Q631147))
action count
action filter_type
action find
entity Q24121551
relation P703
type Q631147
[ANSWER]
['Q24121551', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ( COUNT ( ?v ) AS ?f ) WHERE { resource:Q24121551 property:P703 ?v . ?v rdf:type ontology:Q631147 }
1
action count
action filter_type
action find
entity hypothetical protein    BN117_2929
relation found in taxon
type infraspecific name
['hypothetical protein    BN117_2929', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ( COUNT ( ?v ) AS ?f ) WHERE { resource:hypothetical_protein____BN117_2929 property:found_in_taxon ?v . ?v rdf:type ontology:infraspecific_name }
[]
Comparative Reasoning (All)
Comparative|More/Less|Mult. entity type
Q21114578
P129
Q79529 Q8386 Q181394
USER
Which nutrients can interact with more number of chemical substances or drugs than Gamma-aminobutyric acid receptor subunit alpha-3 ?
(c(Q181394),P129,c(Q79529)|c(Q8386))
action greater
action union
action find_tuple_counts
relation P129
type Q181394
type Q79529
action find_tuple_counts
relation P129
type Q181394
type Q8386
action count
action filter_multi_types
action find
entity Q21114578
relation P129
type Q79529
type Q8386
[{'concept': 'Q181394'}, 'P129', [{'concept': 'Q79529'}, {'concept': 'Q8386'}]]
SELECT DISTINCT ?o WHERE { { SELECT DISTINCT ( COUNT ( ?s ) AS ?n ) WHERE { resource:Q21114578 property:P129 ?s . { { ?s rdf:type ontology:Q79529 } UNION { ?s rdf:type ontology:Q8386 } } } } . FILTER ( ?p > ?n ) . { SELECT DISTINCT ( COUNT ( ?t ) AS ?p ) ?o WHERE { { ?o property:P129 ?t . ?t rdf:type ontology:Q79529 . ?o rdf:type ontology:Q181394 } UNION { ?o property:P129 ?t . ?o rdf:type ontology:Q181394 . ?t rdf:type ontology:Q8386 } } GROUP BY ?o } }
Gamma-aminobutyric acid receptor subunit alpha-3
action greater
action union
action find_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
action find_tuple_counts
relation physically interacts with
type nutrient
type drug
action count
action filter_multi_types
action find
entity Gamma-aminobutyric acid receptor subunit alpha-3
relation physically interacts with
type chemical substance
type drug
[{'concept': 'nutrient'}, 'physically interacts with', [{'concept': 'chemical substance'}, {'concept': 'drug'}]]
SELECT DISTINCT ?o WHERE { { SELECT DISTINCT ( COUNT ( ?s ) AS ?n ) WHERE { resource:Gamma-aminobutyric_acid_receptor_subunit_alpha-3 property:physically_interacts_with ?s . { { ?s rdf:type ontology:chemical_substance } UNION { ?s rdf:type ontology:drug } } } } . FILTER ( ?p > ?n ) . { SELECT DISTINCT ( COUNT ( ?t ) AS ?p ) ?o WHERE { { ?o property:physically_interacts_with ?t . ?t rdf:type ontology:chemical_substance . ?o rdf:type ontology:nutrient } UNION { ?o property:physically_interacts_with ?t . ?o rdf:type ontology:nutrient . ?t rdf:type ontology:drug } } GROUP BY ?o } }
[]
chemical substance drug nutrient
Q2034004 Q1949517 Q4639596
SYSTEM
D(2) dopamine receptor, 5-hydroxytryptamine receptor 2A, 5-hydroxytryptamine receptor 2B
Q7050954 Q309513 Q308856 Q4847910 Q287961 Q5123372 Q410142 Q288797 Q287958 Q4847900 Q4847907 Q4639596 Q4734884 Q4734887 Q4734886 Q2844056 Q21115334 Q21115051 Q21115052 Q415364 Q21109355 Q4734894 Q21110872 Q4734892 Q21108118 Q4734891 Q8083989 Q21115046 Q21115043 Q1949517 Q21109363 Q5520260 Q2034004
(c(Q181394),P129,c(Q79529)|c(Q8386))
action greater
action union
action find_tuple_counts
relation P129
type Q181394
type Q79529
action find_tuple_counts
relation P129
type Q181394
type Q8386
action count
action filter_multi_types
action find
entity Q21114578
relation P129
type Q79529
type Q8386
[ANSWERS] can interact with more number of chemical substances or drugs than Gamma-aminobutyric acid receptor subunit alpha-3
[{'concept': 'Q181394'}, 'P129', [{'concept': 'Q79529'}, {'concept': 'Q8386'}]]
SELECT DISTINCT ?o WHERE { { SELECT DISTINCT ( COUNT ( ?s ) AS ?n ) WHERE { resource:Q21114578 property:P129 ?s . { { ?s rdf:type ontology:Q79529 } UNION { ?s rdf:type ontology:Q8386 } } } } . FILTER ( ?p > ?n ) . { SELECT DISTINCT ( COUNT ( ?t ) AS ?p ) ?o WHERE { { ?o property:P129 ?t . ?t rdf:type ontology:Q79529 . ?o rdf:type ontology:Q181394 } UNION { ?o property:P129 ?t . ?o rdf:type ontology:Q181394 . ?t rdf:type ontology:Q8386 } } GROUP BY ?o } }
Sodium-dependent noradrenaline transporter Histamine H1 receptor D(4) dopamine receptor Muscarinic acetylcholine receptor M2 Beta-2 adrenergic receptor Mu-type opioid receptor Sodium-dependent serotonin transporter 5-hydroxytryptamine receptor 1B Beta-1 adrenergic receptor Muscarinic acetylcholine receptor M1 Muscarinic acetylcholine receptor M4 5-hydroxytryptamine receptor 2B Alpha-1A adrenergic receptor Alpha-1D adrenergic receptor Alpha-1B adrenergic receptor Muscarinic acetylcholine receptor M3 Delta-type opioid receptor 5-hydroxytryptamine receptor 1E 5-hydroxytryptamine receptor 1F Prostaglandin G/H synthase 2 5-hydroxytryptamine receptor 7 Alpha-2B adrenergic receptor D(3) dopamine receptor Alpha-2A adrenergic receptor 5-hydroxytryptamine receptor 2C Alpha-2C adrenergic receptor Kappa-type opioid receptor 5-hydroxytryptamine receptor 1D 5-hydroxytryptamine receptor 1A 5-hydroxytryptamine receptor 2A 5-hydroxytryptamine receptor 6 Gamma-aminobutyric acid receptor subunit alpha-1 D(2) dopamine receptor
D(2) dopamine receptor, 5-hydroxytryptamine receptor 2A and 5-hydroxytryptamine receptor 2B can interact with more number of chemical substances or drugs than Gamma-aminobutyric acid receptor subunit alpha-3
D(2) dopamine receptor 5-hydroxytryptamine receptor 2A 5-hydroxytryptamine receptor 2B
action greater
action union
action find_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
action find_tuple_counts
relation physically interacts with
type nutrient
type drug
action count
action filter_multi_types
action find
entity Gamma-aminobutyric acid receptor subunit alpha-3
relation physically interacts with
type chemical substance
type drug
[{'concept': 'nutrient'}, 'physically interacts with', [{'concept': 'chemical substance'}, {'concept': 'drug'}]]
SELECT DISTINCT ?o WHERE { { SELECT DISTINCT ( COUNT ( ?s ) AS ?n ) WHERE { resource:Gamma-aminobutyric_acid_receptor_subunit_alpha-3 property:physically_interacts_with ?s . { { ?s rdf:type ontology:chemical_substance } UNION { ?s rdf:type ontology:drug } } } } . FILTER ( ?p > ?n ) . { SELECT DISTINCT ( COUNT ( ?t ) AS ?p ) ?o WHERE { { ?o property:physically_interacts_with ?t . ?t rdf:type ontology:chemical_substance . ?o rdf:type ontology:nutrient } UNION { ?o property:physically_interacts_with ?t . ?o rdf:type ontology:nutrient . ?t rdf:type ontology:drug } } GROUP BY ?o } }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Single entity type
P682
Q1057 Q181394
USER
How many metabolic processes are a biological processes that approximately 684 nutrients are involved in ?
(c(Q181394),P682,c(Q1057))
action count
action approx
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
value 684
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ( COUNT ( ?p ) AS ?b ) WHERE { { SELECT DISTINCT ?p ( COUNT ( ?w ) AS ?c ) WHERE { ?p rdf:type ontology:Q1057 . ?w rdf:type ontology:Q181394 . ?w property:P682 ?p } GROUP BY ?p } . FILTER ( ?c = 684 ) }
action count
action approx
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
value 684
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ( COUNT ( ?p ) AS ?b ) WHERE { { SELECT DISTINCT ?p ( COUNT ( ?w ) AS ?c ) WHERE { ?p rdf:type ontology:metabolic_process . ?w rdf:type ontology:nutrient . ?w property:biological_process ?p } GROUP BY ?p } . FILTER ( ?c = 684 ) }
[]
metabolic process nutrient
SYSTEM
76
Q14864889 Q14907628 Q14913194 Q22274727 Q22251129 Q14905693 Q14860777 Q21134382 Q21097138 Q14819379 Q21759902 Q21133617 Q133895 Q21157940 Q21116483 Q14863351 Q21102358 Q21114210 Q14907178 Q21121151 Q14880758 Q21761098 Q22275051 Q21100626 Q14913439 Q14916189 Q21159531 Q21111970 Q898365 Q22274640 Q22279483 Q21119973 Q14865941 Q22282595 Q14907180 Q14907181 Q14905125 Q21096256 Q14863432 Q14902250 Q21124879 Q14909347 Q15313450 Q179924 Q21101220 Q21095286 Q14863986 Q14358591 Q838181 Q21116485 Q14859896 Q21103172 Q22276072 Q14914233 Q14897831 Q14645736 Q14864262 Q14859628 Q14819787 Q21119193 Q22274791 Q14819781 Q22279537 Q22283508 Q14327719 Q22279533 Q21124620 Q14860507 Q21112195 Q14890104 Q14864417 Q14864414 Q21759328 Q900386 Q14912265 Q21760838
(c(Q181394),P682,c(Q1057))
action count
action approx
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
value 684
[ANSWER]
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ( COUNT ( ?p ) AS ?b ) WHERE { { SELECT DISTINCT ?p ( COUNT ( ?w ) AS ?c ) WHERE { ?p rdf:type ontology:Q1057 . ?w rdf:type ontology:Q181394 . ?w property:P682 ?p } GROUP BY ?p } . FILTER ( ?c = 684 ) }
cellular aromatic compound metabolic process multicellular organism metabolic process cellular ketone body metabolic process secondary metabolic process proteolysis in other organism translational initiation hormone biosynthetic process cofactor metabolic process cellular aldehyde metabolic process one-carbon metabolic process carbon fixation actin modification tricarboxylic acid cycle nitrobenzene metabolic process lymphotoxin A biosynthetic process signal transduction by protein phosphorylation sulfur compound metabolic process regulation of translational initiation by eIF2 alpha dephosphorylation interleukin-2 biosynthetic process reactive nitrogen species metabolic process nucleobase-containing compound metabolic process photosynthesis halogenated hydrocarbon metabolic process peptidyl-lysine modification to peptidyl-hypusine organophosphate metabolic process organic acid metabolic process selenium compound metabolic process reactive oxygen species biosynthetic process glycosylation cellular biosynthetic process cellular macromolecule metabolic process oxygen metabolic process connective tissue growth factor biosynthetic process ketone body metabolic process interleukin-13 biosynthetic process granulocyte macrophage colony-stimulating factor biosynthetic process neurotransmitter metabolic process cellular carbohydrate metabolic process reactive oxygen species metabolic process telomere maintenance via semi-conservative replication interleukin-8 biosynthetic process flavonoid metabolic process methylation-dependent chromatin silencing bioluminescence wax biosynthetic process amyloid fibril formation hormone catabolic process xenobiotic metabolic process respiratory burst interleukin-6 biosynthetic process cellular amino acid metabolic process DNA protection glycosyl compound metabolic process phosphatidic acid metabolic process isotype switching thyroid hormone metabolic process protein metabolic process cellular lipid metabolic process peptide hormone processing cellular modified amino acid metabolic process organic cyclic compound metabolic process generation of precursor metabolites and energy viral RNA genome replication IRES-dependent viral translational initiation small molecule metabolic process transposon integration transposition, DNA-mediated receptor internalization patched ligand maturation toxin metabolic process heterocycle metabolic process drug metabolic process cellular catabolic process demethylation cellular ketone metabolic process phosphorus metabolic process
76
action count
action approx
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
value 684
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ( COUNT ( ?p ) AS ?b ) WHERE { { SELECT DISTINCT ?p ( COUNT ( ?w ) AS ?c ) WHERE { ?p rdf:type ontology:metabolic_process . ?w rdf:type ontology:nutrient . ?w property:biological_process ?p } GROUP BY ?p } . FILTER ( ?c = 684 ) }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q7673856 Q2034004
P129
Q8386
USER
Which drugs can communicate with D(2) dopamine receptor or Substance-P receptor ?
OR((c(Q8386),P129,Q2034004), (c(Q8386),P129,Q7673856))
action filter_type
action union
action find_reverse
entity Q2034004
relation P129
action find_reverse
entity Q7673856
relation P129
type Q8386
{'OR': [[{'concept': 'Q8386'}, 'P129', 'Q2034004'], [{'concept': 'Q8386'}, 'P129', 'Q7673856']]}
SELECT DISTINCT ?e WHERE { ?e rdf:type ontology:Q8386 . { ?e property:P129 ?i . VALUES ( ?i ) { ( resource:Q2034004 ) ( resource:Q7673856 ) } } }
Substance-P receptor D(2) dopamine receptor
action filter_type
action union
action find_reverse
entity D(2) dopamine receptor
relation physically interacts with
action find_reverse
entity Substance-P receptor
relation physically interacts with
type drug
{'OR': [[{'concept': 'drug'}, 'physically interacts with', 'D(2) dopamine receptor'], [{'concept': 'drug'}, 'physically interacts with', 'Substance-P receptor']]}
SELECT DISTINCT ?e WHERE { ?e rdf:type ontology:drug . { ?e property:physically_interacts_with ?i . VALUES ( ?i ) { ( resource:D(2)_dopamine_receptor ) ( resource:Substance-P_receptor ) } } }
[]
drug
Q58376 Q408535 Q408588 Q423308 Q411188 Q6821618 Q226905 Q413581 Q4890814 Q1752915
SYSTEM
Some of them are fluphenazine, quetiapine, vilazodone, cabergoline, aripiprazole, mesoridazine, zotepine, bromocriptine, benzquinamide, trifluoperazine
Q419822 Q58376 Q424446 Q423308 Q4927426 Q422418 Q58614 Q201872 Q621834 Q205517 Q2359690 Q407972 Q144085 Q6821618 Q269111 Q424238 Q6590349 Q423520 Q411985 Q2924764 Q408588 Q567927 Q420590 Q1752915 Q4890814 Q170304 Q7702355 Q418050 Q413581 Q5473324 Q251347 Q421304 Q412443 Q19598139 Q408535 Q411188 Q226905 Q1452256 Q221361 Q420350 Q415752 Q418785
OR((c(Q8386),P129,Q2034004), (c(Q8386),P129,Q7673856))
action filter_type
action union
action find_reverse
entity Q2034004
relation P129
action find_reverse
entity Q7673856
relation P129
type Q8386
[ANSWERS] can communicate with D(2) dopamine receptor or Substance-P receptor
{'OR': [[{'concept': 'Q8386'}, 'P129', 'Q2034004'], [{'concept': 'Q8386'}, 'P129', 'Q7673856']]}
SELECT DISTINCT ?e WHERE { ?e rdf:type ontology:Q8386 . { ?e property:P129 ?i . VALUES ( ?i ) { ( resource:Q2034004 ) ( resource:Q7673856 ) } } }
promazine fluphenazine lisuride cabergoline blonanserin sulpiride loxapine Olanzapine aprepitant ziprasidone prochlorperazine chlorpromazine pimozide mesoridazine apomorphine domperidone perospirone perphenazine rotigotine brexpiprazole vilazodone pipotiazine ropinirole trifluoperazine benzquinamide dopamine terguride sertindole bromocriptine fosaprepitant haloperidol pramipexole risperidone netupitant quetiapine aripiprazole zotepine (-)-sulpiride clozapine flupentixol pergolide amisulpride
Fluphenazine, quetiapine, vilazodone, cabergoline, aripiprazole, mesoridazine, zotepine, bromocriptine, benzquinamide and trifluoperazine can communicate with D(2) dopamine receptor or Substance-P receptor
fluphenazine quetiapine vilazodone cabergoline aripiprazole mesoridazine zotepine bromocriptine benzquinamide trifluoperazine
action filter_type
action union
action find_reverse
entity D(2) dopamine receptor
relation physically interacts with
action find_reverse
entity Substance-P receptor
relation physically interacts with
type drug
{'OR': [[{'concept': 'drug'}, 'physically interacts with', 'D(2) dopamine receptor'], [{'concept': 'drug'}, 'physically interacts with', 'Substance-P receptor']]}
SELECT DISTINCT ?e WHERE { ?e rdf:type ontology:drug . { ?e property:physically_interacts_with ?i . VALUES ( ?i ) { ( resource:D(2)_dopamine_receptor ) ( resource:Substance-P_receptor ) } } }
[]