Simple Question (Direct)
Simple Question
Q21130406
P702
Q863908
USER
Which nucleic acid sequence encodes Protein PAT1 homolog 1 ?
(Q21130406,P702,c(Q863908))
action filter_type
action find
entity Q21130406
relation P702
type Q863908
['Q21130406', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?a WHERE { resource:Q21130406 property:P702 ?a . ?a rdf:type ontology:Q863908 }
Protein PAT1 homolog 1
action filter_type
action find
entity Protein PAT1 homolog 1
relation encoded by
type nucleic acid sequence
['Protein PAT1 homolog 1', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?a WHERE { resource:Protein_PAT1_homolog_1 property:encoded_by ?a . ?a rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18053406
SYSTEM
PATL1
Q18053406
(Q21130406,P702,c(Q863908))
action filter_type
action find
entity Q21130406
relation P702
type Q863908
[ANSWER] encodes Protein PAT1 homolog 1
['Q21130406', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?a WHERE { resource:Q21130406 property:P702 ?a . ?a rdf:type ontology:Q863908 }
PATL1
PATL1 encodes Protein PAT1 homolog 1
PATL1
action filter_type
action find
entity Protein PAT1 homolog 1
relation encoded by
type nucleic acid sequence
['Protein PAT1 homolog 1', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?a WHERE { resource:Protein_PAT1_homolog_1 property:encoded_by ?a . ?a rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21130406
P681
Q45948
USER
What is a component of that nutrient ?
(Q18053406,P681,c(Q45948))
action filter_type
action find
entity Q21130406
relation P681
type Q45948
['Q18053406', 'P681', {'concept': 'Q45948'}]
SELECT DISTINCT ?j WHERE { resource:Q21130406 property:P681 ?j . ?j rdf:type ontology:Q45948 }
Protein PAT1 homolog 1
action filter_type
action find
entity Protein PAT1 homolog 1
relation cell component
type organelle
['PATL1', 'cell component', {'concept': 'organelle'}]
SELECT DISTINCT ?j WHERE { resource:Protein_PAT1_homolog_1 property:cell_component ?j . ?j rdf:type ontology:organelle }
[]
organelle
Q14349519
SYSTEM
intracellular membrane-bounded organelle
Q14349519
(Q18053406,P681,c(Q45948))
action filter_type
action find
entity Q21130406
relation P681
type Q45948
A component of that nutrient is an [ANSWER]
['Q18053406', 'P681', {'concept': 'Q45948'}]
SELECT DISTINCT ?j WHERE { resource:Q21130406 property:P681 ?j . ?j rdf:type ontology:Q45948 }
intracellular membrane-bounded organelle
A component of that nutrient is an intracellular membrane-bounded organelle
intracellular membrane-bounded organelle
action filter_type
action find
entity Protein PAT1 homolog 1
relation cell component
type organelle
['PATL1', 'cell component', {'concept': 'organelle'}]
SELECT DISTINCT ?j WHERE { resource:Protein_PAT1_homolog_1 property:cell_component ?j . ?j rdf:type ontology:organelle }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q18034344 Q18053406
P688
Q181394
USER
Which nutrients are PATL1 or SPTLC2 an encoding of ?
OR((Q18053406,P688,c(Q181394)), (Q18034344,P688,c(Q181394)))
action filter_type
action union
action find
entity Q18053406
relation P688
action find
entity Q18034344
relation P688
type Q181394
{'OR': [['Q18053406', 'P688', {'concept': 'Q181394'}], ['Q18034344', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?s WHERE { { { resource:Q18053406 property:P688 ?s } UNION { resource:Q18034344 property:P688 ?s } } . ?s rdf:type ontology:Q181394 }
SPTLC2 PATL1
action filter_type
action union
action find
entity PATL1
relation encodes
action find
entity SPTLC2
relation encodes
type nutrient
{'OR': [['PATL1', 'encodes', {'concept': 'nutrient'}], ['SPTLC2', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?s WHERE { { { resource:PATL1 property:encodes ?s } UNION { resource:SPTLC2 property:encodes ?s } } . ?s rdf:type ontology:nutrient }
[]
nutrient
Q21122109 Q21130406 Q21137102
SYSTEM
Serine palmitoyltransferase 2, Protein PAT1 homolog 1, Serine palmitoyltransferase, long chain base subunit 2, isoform CRA_a
Q21122109 Q21130406 Q21137102
OR((Q18053406,P688,c(Q181394)), (Q18034344,P688,c(Q181394)))
action filter_type
action union
action find
entity Q18053406
relation P688
action find
entity Q18034344
relation P688
type Q181394
[ANSWERS]
{'OR': [['Q18053406', 'P688', {'concept': 'Q181394'}], ['Q18034344', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?s WHERE { { { resource:Q18053406 property:P688 ?s } UNION { resource:Q18034344 property:P688 ?s } } . ?s rdf:type ontology:Q181394 }
Serine palmitoyltransferase 2 Protein PAT1 homolog 1 Serine palmitoyltransferase, long chain base subunit 2, isoform CRA_a
Serine palmitoyltransferase 2, Protein PAT1 homolog 1 and Serine palmitoyltransferase, long chain base subunit 2, isoform CRA a are PATL1 or SPTLC2 an encoding of
Serine palmitoyltransferase 2 Protein PAT1 homolog 1 Serine palmitoyltransferase, long chain base subunit 2, isoform CRA_a
action filter_type
action union
action find
entity PATL1
relation encodes
action find
entity SPTLC2
relation encodes
type nutrient
{'OR': [['PATL1', 'encodes', {'concept': 'nutrient'}], ['SPTLC2', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?s WHERE { { { resource:PATL1 property:encodes ?s } UNION { resource:SPTLC2 property:encodes ?s } } . ?s rdf:type ontology:nutrient }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q18053406
P703
Q16521
USER
Which taxon is PATL1 found in ?
(Q18053406,P703,c(Q16521))
action filter_type
action find
entity Q18053406
relation P703
type Q16521
['Q18053406', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?o WHERE { resource:Q18053406 property:P703 ?o . ?o rdf:type ontology:Q16521 }
PATL1
action filter_type
action find
entity PATL1
relation found in taxon
type taxon
['PATL1', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?o WHERE { resource:PATL1 property:found_in_taxon ?o . ?o rdf:type ontology:taxon }
[]
taxon
Q15978631
SYSTEM
Homo sapiens
Q15978631
(Q18053406,P703,c(Q16521))
action filter_type
action find
entity Q18053406
relation P703
type Q16521
PATL1 is found in [ANSWER]
['Q18053406', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?o WHERE { resource:Q18053406 property:P703 ?o . ?o rdf:type ontology:Q16521 }
Homo sapiens
PATL1 is found in Homo sapiens
Homo sapiens
action filter_type
action find
entity PATL1
relation found in taxon
type taxon
['PATL1', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?o WHERE { resource:PATL1 property:found_in_taxon ?o . ?o rdf:type ontology:taxon }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21122109
P129
Q79529
USER
Which chemical substance communicates with Serine palmitoyltransferase 2 ?
(c(Q79529),P129,Q21122109)
action filter_type
action find
entity Q21122109
relation P129
type Q79529
[{'concept': 'Q79529'}, 'P129', 'Q21122109']
SELECT DISTINCT ?q WHERE { resource:Q21122109 property:P129 ?q . ?q rdf:type ontology:Q79529 }
Serine palmitoyltransferase 2
action filter_type
action find
entity Serine palmitoyltransferase 2
relation physically interacts with
type chemical substance
[{'concept': 'chemical substance'}, 'physically interacts with', 'Serine palmitoyltransferase 2']
SELECT DISTINCT ?q WHERE { resource:Serine_palmitoyltransferase_2 property:physically_interacts_with ?q . ?q rdf:type ontology:chemical_substance }
[]
chemical substance
Q6948247
SYSTEM
myriocin
Q6948247
(c(Q79529),P129,Q21122109)
action filter_type
action find
entity Q21122109
relation P129
type Q79529
2 [ANSWER] communicates with Serine palmitoyltransferase 2
[{'concept': 'Q79529'}, 'P129', 'Q21122109']
SELECT DISTINCT ?q WHERE { resource:Q21122109 property:P129 ?q . ?q rdf:type ontology:Q79529 }
myriocin
2 myriocin communicates with Serine palmitoyltransferase 2
myriocin
action filter_type
action find
entity Serine palmitoyltransferase 2
relation physically interacts with
type chemical substance
[{'concept': 'chemical substance'}, 'physically interacts with', 'Serine palmitoyltransferase 2']
SELECT DISTINCT ?q WHERE { resource:Serine_palmitoyltransferase_2 property:physically_interacts_with ?q . ?q rdf:type ontology:chemical_substance }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q15978631
P689
Q2057971
USER
Which health problem afflicts Homo sapiens ?
(c(Q2057971),P689,Q15978631)
action filter_type
action find_reverse
entity Q15978631
relation P689
type Q2057971
[{'concept': 'Q2057971'}, 'P689', 'Q15978631']
SELECT DISTINCT ?b WHERE { ?b property:P689 resource:Q15978631 . ?b rdf:type ontology:Q2057971 }
Homo sapiens
action filter_type
action find_reverse
entity Homo sapiens
relation afflicts
type health problem
[{'concept': 'health problem'}, 'afflicts', 'Homo sapiens']
SELECT DISTINCT ?b WHERE { ?b property:afflicts resource:Homo_sapiens . ?b rdf:type ontology:health_problem }
[]
health problem
Q403463
SYSTEM
Aicardi syndrome
Q403463
(c(Q2057971),P689,Q15978631)
action filter_type
action find_reverse
entity Q15978631
relation P689
type Q2057971
[ANSWER] afflicts Homo sapiens
[{'concept': 'Q2057971'}, 'P689', 'Q15978631']
SELECT DISTINCT ?b WHERE { ?b property:P689 resource:Q15978631 . ?b rdf:type ontology:Q2057971 }
Aicardi syndrome
Aicardi syndrome afflicts Homo sapiens
Aicardi syndrome
action filter_type
action find_reverse
entity Homo sapiens
relation afflicts
type health problem
[{'concept': 'health problem'}, 'afflicts', 'Homo sapiens']
SELECT DISTINCT ?b WHERE { ?b property:afflicts resource:Homo_sapiens . ?b rdf:type ontology:health_problem }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q403463
P1995
Q1047113
USER
What is the medical speciality of that health problem ?
(Q403463,P1995,c(Q1047113))
action filter_type
action find
entity Q403463
relation P1995
type Q1047113
['Q403463', 'P1995', {'concept': 'Q1047113'}]
SELECT DISTINCT ?k WHERE { resource:Q403463 property:P1995 ?k . ?k rdf:type ontology:Q1047113 }
Aicardi syndrome
action filter_type
action find
entity Aicardi syndrome
relation medical specialty
type special field
['Aicardi syndrome', 'medical specialty', {'concept': 'special field'}]
SELECT DISTINCT ?k WHERE { resource:Aicardi_syndrome property:medical_specialty ?k . ?k rdf:type ontology:special_field }
[]
special field
Q1071953
SYSTEM
medical genetics
Q1071953
(Q403463,P1995,c(Q1047113))
action filter_type
action find
entity Q403463
relation P1995
type Q1047113
The medical speciality of that health problem is called [ANSWER]
['Q403463', 'P1995', {'concept': 'Q1047113'}]
SELECT DISTINCT ?k WHERE { resource:Q403463 property:P1995 ?k . ?k rdf:type ontology:Q1047113 }
medical genetics
The medical speciality of that health problem is called medical genetics
medical genetics
action filter_type
action find
entity Aicardi syndrome
relation medical specialty
type special field
['Aicardi syndrome', 'medical specialty', {'concept': 'special field'}]
SELECT DISTINCT ?k WHERE { resource:Aicardi_syndrome property:medical_specialty ?k . ?k rdf:type ontology:special_field }
[]
Logical Reasoning (All)
Logical|Union|Multiple_Relation
Q23096651 Q6948247
P688 P129
Q181394
USER
Which nutrients do myriocin contact with or are encoded by LysR family transcriptional regulator    SF2906 ?
OR((Q6948247,P129,c(Q181394)), (Q23096651,P688,c(Q181394)))
action filter_type
action union
action find
entity Q6948247
relation P129
action find
entity Q23096651
relation P688
type Q181394
{'OR': [['Q6948247', 'P129', {'concept': 'Q181394'}], ['Q23096651', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?l WHERE { { { resource:Q6948247 property:P129 ?l } UNION { resource:Q23096651 property:P688 ?l } } . ?l rdf:type ontology:Q181394 }
LysR family transcriptional regulator    SF2906 myriocin
action filter_type
action union
action find
entity myriocin
relation physically interacts with
action find
entity LysR family transcriptional regulator    SF2906
relation encodes
type nutrient
{'OR': [['myriocin', 'physically interacts with', {'concept': 'nutrient'}], ['LysR family transcriptional regulator    SF2906', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?l WHERE { { { resource:myriocin property:physically_interacts_with ?l } UNION { resource:LysR_family_transcriptional_regulator____SF2906 property:encodes ?l } } . ?l rdf:type ontology:nutrient }
[]
nutrient
Q21988152 Q23423274 Q21122109 Q21122125
SYSTEM
Serine palmitoyltransferase 1, LysR family transcriptional regulator    SF2906, Serine palmitoyltransferase 2, Serine palmitoyltransferase 3
Q21988152 Q23423274 Q21122109 Q21122125
OR((Q6948247,P129,c(Q181394)), (Q23096651,P688,c(Q181394)))
action filter_type
action union
action find
entity Q6948247
relation P129
action find
entity Q23096651
relation P688
type Q181394
[ANSWERS]
{'OR': [['Q6948247', 'P129', {'concept': 'Q181394'}], ['Q23096651', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?l WHERE { { { resource:Q6948247 property:P129 ?l } UNION { resource:Q23096651 property:P688 ?l } } . ?l rdf:type ontology:Q181394 }
Serine palmitoyltransferase 1 LysR family transcriptional regulator    SF2906 Serine palmitoyltransferase 2 Serine palmitoyltransferase 3
Myriocin contact with LysR family transcriptional regulator SF2906, Serine palmitoyltransferase 2 and Serine palmitoyltransferase 3
Serine palmitoyltransferase 1 LysR family transcriptional regulator    SF2906 Serine palmitoyltransferase 2 Serine palmitoyltransferase 3
action filter_type
action union
action find
entity myriocin
relation physically interacts with
action find
entity LysR family transcriptional regulator    SF2906
relation encodes
type nutrient
{'OR': [['myriocin', 'physically interacts with', {'concept': 'nutrient'}], ['LysR family transcriptional regulator    SF2906', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?l WHERE { { { resource:myriocin property:physically_interacts_with ?l } UNION { resource:LysR_family_transcriptional_regulator____SF2906 property:encodes ?l } } . ?l rdf:type ontology:nutrient }
[]