Simple Question (Direct)
Simple Question
Q24148578
P702
Q863908
USER
What is the gene that encodes tRNA -specific adenosine deaminase    ECUMN_2879 ?
(Q24148578,P702,c(Q863908))
action filter_type
action find
entity Q24148578
relation P702
type Q863908
['Q24148578', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?j WHERE { resource:Q24148578 property:P702 ?j . ?j rdf:type ontology:Q863908 }
tRNA -specific adenosine deaminase    ECUMN_2879
action filter_type
action find
entity tRNA -specific adenosine deaminase    ECUMN_2879
relation encoded by
type nucleic acid sequence
['tRNA -specific adenosine deaminase    ECUMN_2879', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?j WHERE { resource:tRNA_-specific_adenosine_deaminase____ECUMN_2879 property:encoded_by ?j . ?j rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23145984
SYSTEM
tRNA -specific adenosine deaminase    ECUMN_2879
Q23145984
(Q24148578,P702,c(Q863908))
action filter_type
action find
entity Q24148578
relation P702
type Q863908
The gene that encodes tRNA-specific adenosine deaminase ECUMN_2879 is codes tRNA -specific adenosine deaminase ECUMN 2879
['Q24148578', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?j WHERE { resource:Q24148578 property:P702 ?j . ?j rdf:type ontology:Q863908 }
tRNA -specific adenosine deaminase    ECUMN_2879
The gene that encodes tRNA-specific adenosine deaminase ECUMN_2879 is codes tRNA -specific adenosine deaminase ECUMN 2879
tRNA -specific adenosine deaminase    ECUMN_2879
action filter_type
action find
entity tRNA -specific adenosine deaminase    ECUMN_2879
relation encoded by
type nucleic acid sequence
['tRNA -specific adenosine deaminase    ECUMN_2879', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?j WHERE { resource:tRNA_-specific_adenosine_deaminase____ECUMN_2879 property:encoded_by ?j . ?j rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q24148578
P688
Q863908
USER
Which nucleic acid sequence encodes tRNA -specific adenosine deaminase    ECUMN_2879 ?
(c(Q863908),P688,Q24148578)
action filter_type
action find_reverse
entity Q24148578
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q24148578']
SELECT DISTINCT ?d WHERE { ?d property:P688 resource:Q24148578 . ?d rdf:type ontology:Q863908 }
tRNA -specific adenosine deaminase    ECUMN_2879
action filter_type
action find_reverse
entity tRNA -specific adenosine deaminase    ECUMN_2879
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'tRNA -specific adenosine deaminase    ECUMN_2879']
SELECT DISTINCT ?d WHERE { ?d property:encodes resource:tRNA_-specific_adenosine_deaminase____ECUMN_2879 . ?d rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23145984
SYSTEM
tRNA -specific adenosine deaminase    ECUMN_2879
Q23145984
(c(Q863908),P688,Q24148578)
action filter_type
action find_reverse
entity Q24148578
relation P688
type Q863908
TRNA -specific adenosine deaminase ECUMN 2879 encodes tRNA -specific adenosine deaminase ECUMN_2879
[{'concept': 'Q863908'}, 'P688', 'Q24148578']
SELECT DISTINCT ?d WHERE { ?d property:P688 resource:Q24148578 . ?d rdf:type ontology:Q863908 }
tRNA -specific adenosine deaminase    ECUMN_2879
TRNA -specific adenosine deaminase ECUMN 2879 encodes tRNA -specific adenosine deaminase ECUMN_2879
tRNA -specific adenosine deaminase    ECUMN_2879
action filter_type
action find_reverse
entity tRNA -specific adenosine deaminase    ECUMN_2879
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'tRNA -specific adenosine deaminase    ECUMN_2879']
SELECT DISTINCT ?d WHERE { ?d property:encodes resource:tRNA_-specific_adenosine_deaminase____ECUMN_2879 . ?d rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|3 entities, 2 direct, 2(direct) are query entities, subject is indirect
Q23145984 Q24148578 Q23634968
P688
Q181394
USER
Does that nucleic acid sequence encodes tRNA -specific adenosine deaminase    ECUMN_2879 and hypothetical protein    RB13016 ?
(Q23145984,P688,Q24148578) (Q23145984,P688,Q23634968)
action is_in
entity Q23145984
action intersection
action find_reverse
entity Q24148578
relation P688
action find_reverse
entity Q23634968
relation P688
['Q23145984', 'P688', 'Q24148578'] ['Q23145984', 'P688', 'Q23634968']
ASK WHERE { resource:Q23145984 property:P688 resource:Q24148578 . resource:Q23145984 property:P688 resource:Q23634968 }
tRNA -specific adenosine deaminase    ECUMN_2879 tRNA -specific adenosine deaminase    ECUMN_2879 hypothetical protein    RB13016
action is_in
entity tRNA -specific adenosine deaminase    ECUMN_2879
action intersection
action find_reverse
entity tRNA -specific adenosine deaminase    ECUMN_2879
relation encodes
action find_reverse
entity hypothetical protein    RB13016
relation encodes
['tRNA -specific adenosine deaminase    ECUMN_2879', 'encodes', 'tRNA -specific adenosine deaminase    ECUMN_2879'] ['tRNA -specific adenosine deaminase    ECUMN_2879', 'encodes', 'hypothetical protein    RB13016']
ASK WHERE { resource:tRNA_-specific_adenosine_deaminase____ECUMN_2879 property:encodes resource:tRNA_-specific_adenosine_deaminase____ECUMN_2879 . resource:tRNA_-specific_adenosine_deaminase____ECUMN_2879 property:encodes resource:hypothetical_protein____RB13016 }
[]
nutrient
SYSTEM
YES and NO respectively
(Q23145984,P688,Q24148578) (Q23145984,P688,Q23634968)
action is_in
entity Q23145984
action intersection
action find_reverse
entity Q24148578
relation P688
action find_reverse
entity Q23634968
relation P688
[ANSWER]
['Q23145984', 'P688', 'Q24148578'] ['Q23145984', 'P688', 'Q23634968']
ASK WHERE { resource:Q23145984 property:P688 resource:Q24148578 . resource:Q23145984 property:P688 resource:Q23634968 }
YES and NO respectively
action is_in
entity tRNA -specific adenosine deaminase    ECUMN_2879
action intersection
action find_reverse
entity tRNA -specific adenosine deaminase    ECUMN_2879
relation encodes
action find_reverse
entity hypothetical protein    RB13016
relation encodes
['tRNA -specific adenosine deaminase    ECUMN_2879', 'encodes', 'tRNA -specific adenosine deaminase    ECUMN_2879'] ['tRNA -specific adenosine deaminase    ECUMN_2879', 'encodes', 'hypothetical protein    RB13016']
ASK WHERE { resource:tRNA_-specific_adenosine_deaminase____ECUMN_2879 property:encodes resource:tRNA_-specific_adenosine_deaminase____ECUMN_2879 . resource:tRNA_-specific_adenosine_deaminase____ECUMN_2879 property:encodes resource:hypothetical_protein____RB13016 }
[]
Logical Reasoning (All)
Logical|Intersection|Single_Relation
Q21102632 Q24148578
P680
Q44424
USER
Which chemical bonds represents the molecular function of tRNA -specific adenosine deaminase    ECUMN_2879 and Methylcytosine dioxygenase TET2 ?
AND((Q24148578,P680,c(Q44424)), (Q21102632,P680,c(Q44424)))
action filter_type
action intersection
action find
entity Q24148578
relation P680
action find
entity Q21102632
relation P680
type Q44424
{'AND': [['Q24148578', 'P680', {'concept': 'Q44424'}], ['Q21102632', 'P680', {'concept': 'Q44424'}]]}
SELECT DISTINCT ?z WHERE { resource:Q21102632 property:P680 ?z . resource:Q24148578 property:P680 ?z . ?z rdf:type ontology:Q44424 }
Methylcytosine dioxygenase TET2 tRNA -specific adenosine deaminase    ECUMN_2879
action filter_type
action intersection
action find
entity tRNA -specific adenosine deaminase    ECUMN_2879
relation molecular function
action find
entity Methylcytosine dioxygenase TET2
relation molecular function
type chemical bond
{'AND': [['tRNA -specific adenosine deaminase    ECUMN_2879', 'molecular function', {'concept': 'chemical bond'}], ['Methylcytosine dioxygenase TET2', 'molecular function', {'concept': 'chemical bond'}]]}
SELECT DISTINCT ?z WHERE { resource:Methylcytosine_dioxygenase_TET2 property:molecular_function ?z . resource:tRNA_-specific_adenosine_deaminase____ECUMN_2879 property:molecular_function ?z . ?z rdf:type ontology:chemical_bond }
[]
chemical bond
Q14633865 Q13667380
SYSTEM
zinc ion binding, metal ion binding
Q14633865 Q13667380
AND((Q24148578,P680,c(Q44424)), (Q21102632,P680,c(Q44424)))
action filter_type
action intersection
action find
entity Q24148578
relation P680
action find
entity Q21102632
relation P680
type Q44424
The [ANSWERS] represent the molecular function of tRNA -specific adenosine deaminase ECUMN_2879 and Methylcytosine dioxygenase TET2
{'AND': [['Q24148578', 'P680', {'concept': 'Q44424'}], ['Q21102632', 'P680', {'concept': 'Q44424'}]]}
SELECT DISTINCT ?z WHERE { resource:Q21102632 property:P680 ?z . resource:Q24148578 property:P680 ?z . ?z rdf:type ontology:Q44424 }
zinc ion binding metal ion binding
The zinc ion binding and metal ion binding represent the molecular function of tRNA -specific adenosine deaminase ECUMN_2879 and Methylcytosine dioxygenase TET2
zinc ion binding metal ion binding
action filter_type
action intersection
action find
entity tRNA -specific adenosine deaminase    ECUMN_2879
relation molecular function
action find
entity Methylcytosine dioxygenase TET2
relation molecular function
type chemical bond
{'AND': [['tRNA -specific adenosine deaminase    ECUMN_2879', 'molecular function', {'concept': 'chemical bond'}], ['Methylcytosine dioxygenase TET2', 'molecular function', {'concept': 'chemical bond'}]]}
SELECT DISTINCT ?z WHERE { resource:Methylcytosine_dioxygenase_TET2 property:molecular_function ?z . resource:tRNA_-specific_adenosine_deaminase____ECUMN_2879 property:molecular_function ?z . ?z rdf:type ontology:chemical_bond }
[]
Verification (Boolean) (All)
Verification|one entity, multiple entities (as object) referred indirectly
Q22989029
P680
Q181394
USER
Do ABC-F family ATPase    PA1964 have the molecular function those chemical bonds ?
(Q22989029,P680,Q14633865) (Q22989029,P680,Q13667380)
action is_in
entity prev_answer
action find
entity Q22989029
relation P680
['Q22989029', 'P680', 'Q14633865'] ['Q22989029', 'P680', 'Q13667380']
ASK WHERE { resource:Q22989029 property:P680 ?v . VALUES ( ?v ) { ( resource:Q14633865 ) ( resource:Q13667380 ) } }
ABC-F family ATPase    PA1964
action is_in
entity prev_answer
action find
entity ABC-F family ATPase    PA1964
relation molecular function
['ABC-F family ATPase    PA1964', 'molecular function', 'zinc ion binding'] ['ABC-F family ATPase    PA1964', 'molecular function', 'metal ion binding']
ASK WHERE { resource:ABC-F_family_ATPase____PA1964 property:molecular_function ?v . VALUES ( ?v ) { ( resource:zinc_ion_binding ) ( resource:metal_ion_binding ) } }
[]
nutrient
SYSTEM
NO
(Q22989029,P680,Q14633865) (Q22989029,P680,Q13667380)
action is_in
entity prev_answer
action find
entity Q22989029
relation P680
[ANSWER]
['Q22989029', 'P680', 'Q14633865'] ['Q22989029', 'P680', 'Q13667380']
ASK WHERE { resource:Q22989029 property:P680 ?v . VALUES ( ?v ) { ( resource:Q14633865 ) ( resource:Q13667380 ) } }
No
action is_in
entity prev_answer
action find
entity ABC-F family ATPase    PA1964
relation molecular function
['ABC-F family ATPase    PA1964', 'molecular function', 'zinc ion binding'] ['ABC-F family ATPase    PA1964', 'molecular function', 'metal ion binding']
ASK WHERE { resource:ABC-F_family_ATPase____PA1964 property:molecular_function ?v . VALUES ( ?v ) { ( resource:zinc_ion_binding ) ( resource:metal_ion_binding ) } }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23145984
P703
Q631147
USER
Which taxon does tRNA -specific adenosine deaminase    ECUMN_2879 belong to ?
(Q23145984,P703,c(Q631147))
action filter_type
action find
entity Q23145984
relation P703
type Q631147
['Q23145984', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?q WHERE { resource:Q23145984 property:P703 ?q . ?q rdf:type ontology:Q631147 }
tRNA -specific adenosine deaminase    ECUMN_2879
action filter_type
action find
entity tRNA -specific adenosine deaminase    ECUMN_2879
relation found in taxon
type infraspecific name
['tRNA -specific adenosine deaminase    ECUMN_2879', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?q WHERE { resource:tRNA_-specific_adenosine_deaminase____ECUMN_2879 property:found_in_taxon ?q . ?q rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102931
SYSTEM
Escherichia coli UMN026
Q21102931
(Q23145984,P703,c(Q631147))
action filter_type
action find
entity Q23145984
relation P703
type Q631147
[ANSWER] tRNA -specific adenosine deaminase ECUMN_2879 belongs to
['Q23145984', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?q WHERE { resource:Q23145984 property:P703 ?q . ?q rdf:type ontology:Q631147 }
Escherichia coli UMN026
Escherichia coli UMN026 tRNA -specific adenosine deaminase ECUMN_2879 belongs to
Escherichia coli UMN026
action filter_type
action find
entity tRNA -specific adenosine deaminase    ECUMN_2879
relation found in taxon
type infraspecific name
['tRNA -specific adenosine deaminase    ECUMN_2879', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?q WHERE { resource:tRNA_-specific_adenosine_deaminase____ECUMN_2879 property:found_in_taxon ?q . ?q rdf:type ontology:infraspecific_name }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q8386 Q181394 Q181394
USER
How many nutrients can interact with approximately 36 drugs and nutrients ?
(c(Q181394),P129,c(Q8386)|c(Q181394))
action count
action approx
action union
action find_tuple_counts
relation P129
type Q181394
type Q8386
action find_tuple_counts
relation P129
type Q181394
type Q181394
value 36
[{'concept': 'Q181394'}, 'P129', [{'concept': 'Q8386'}, {'concept': 'Q181394'}]]
SELECT DISTINCT ( COUNT ( ?c ) AS ?e ) WHERE { { SELECT DISTINCT ?c ( COUNT ( ?q ) AS ?b ) WHERE { { ?c property:P129 ?q . ?c rdf:type ontology:Q181394 . ?q rdf:type ontology:Q8386 } UNION { ?c property:P129 ?q . ?c rdf:type ontology:Q181394 . ?q rdf:type ontology:Q181394 } } GROUP BY ?c } . FILTER ( ?b = 36 ) }
action count
action approx
action union
action find_tuple_counts
relation physically interacts with
type nutrient
type drug
action find_tuple_counts
relation physically interacts with
type nutrient
type nutrient
value 36
[{'concept': 'nutrient'}, 'physically interacts with', [{'concept': 'drug'}, {'concept': 'nutrient'}]]
SELECT DISTINCT ( COUNT ( ?c ) AS ?e ) WHERE { { SELECT DISTINCT ?c ( COUNT ( ?q ) AS ?b ) WHERE { { ?c property:physically_interacts_with ?q . ?c rdf:type ontology:nutrient . ?q rdf:type ontology:drug } UNION { ?c property:physically_interacts_with ?q . ?c rdf:type ontology:nutrient . ?q rdf:type ontology:nutrient } } GROUP BY ?c } . FILTER ( ?b = 36 ) }
[]
drug nutrient nutrient
SYSTEM
3
Q21108118 Q21115043 Q2034004
(c(Q181394),P129,c(Q8386)|c(Q181394))
action count
action approx
action union
action find_tuple_counts
relation P129
type Q181394
type Q8386
action find_tuple_counts
relation P129
type Q181394
type Q181394
value 36
[ANSWER]
[{'concept': 'Q181394'}, 'P129', [{'concept': 'Q8386'}, {'concept': 'Q181394'}]]
SELECT DISTINCT ( COUNT ( ?c ) AS ?e ) WHERE { { SELECT DISTINCT ?c ( COUNT ( ?q ) AS ?b ) WHERE { { ?c property:P129 ?q . ?c rdf:type ontology:Q181394 . ?q rdf:type ontology:Q8386 } UNION { ?c property:P129 ?q . ?c rdf:type ontology:Q181394 . ?q rdf:type ontology:Q181394 } } GROUP BY ?c } . FILTER ( ?b = 36 ) }
5-hydroxytryptamine receptor 2C 5-hydroxytryptamine receptor 1A D(2) dopamine receptor
3
action count
action approx
action union
action find_tuple_counts
relation physically interacts with
type nutrient
type drug
action find_tuple_counts
relation physically interacts with
type nutrient
type nutrient
value 36
[{'concept': 'nutrient'}, 'physically interacts with', [{'concept': 'drug'}, {'concept': 'nutrient'}]]
SELECT DISTINCT ( COUNT ( ?c ) AS ?e ) WHERE { { SELECT DISTINCT ?c ( COUNT ( ?q ) AS ?b ) WHERE { { ?c property:physically_interacts_with ?q . ?c rdf:type ontology:nutrient . ?q rdf:type ontology:drug } UNION { ?c property:physically_interacts_with ?q . ?c rdf:type ontology:nutrient . ?q rdf:type ontology:nutrient } } GROUP BY ?c } . FILTER ( ?b = 36 ) }
[]