Simple Question (Direct)
Simple Question
Q24093147
P703
Q631147
USER
What is the taxon to which transcription elongation factor GreA    Psyr_4190 belongs to ?
(Q24093147,P703,c(Q631147))
action filter_type
action find
entity Q24093147
relation P703
type Q631147
['Q24093147', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?r WHERE { resource:Q24093147 property:P703 ?r . ?r rdf:type ontology:Q631147 }
transcription elongation factor GreA    Psyr_4190
action filter_type
action find
entity transcription elongation factor GreA    Psyr_4190
relation found in taxon
type infraspecific name
['transcription elongation factor GreA    Psyr_4190', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?r WHERE { resource:transcription_elongation_factor_GreA____Psyr_4190 property:found_in_taxon ?r . ?r rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21079490
SYSTEM
Pseudomonas syringae pv. syringae B728a
Q21079490
(Q24093147,P703,c(Q631147))
action filter_type
action find
entity Q24093147
relation P703
type Q631147
[ANSWER]
['Q24093147', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?r WHERE { resource:Q24093147 property:P703 ?r . ?r rdf:type ontology:Q631147 }
Pseudomonas syringae pv. syringae B728a
Pseudomonas syringae pv. syringae B728a
Pseudomonas syringae pv. syringae B728a
action filter_type
action find
entity transcription elongation factor GreA    Psyr_4190
relation found in taxon
type infraspecific name
['transcription elongation factor GreA    Psyr_4190', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?r WHERE { resource:transcription_elongation_factor_GreA____Psyr_4190 property:found_in_taxon ?r . ?r rdf:type ontology:infraspecific_name }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q24093147
P702
Q863908
USER
Which gene encodes transcription elongation factor GreA    Psyr_4190 ?
(Q24093147,P702,c(Q863908))
action filter_type
action find
entity Q24093147
relation P702
type Q863908
['Q24093147', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?x WHERE { resource:Q24093147 property:P702 ?x . ?x rdf:type ontology:Q863908 }
transcription elongation factor GreA    Psyr_4190
action filter_type
action find
entity transcription elongation factor GreA    Psyr_4190
relation encoded by
type nucleic acid sequence
['transcription elongation factor GreA    Psyr_4190', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?x WHERE { resource:transcription_elongation_factor_GreA____Psyr_4190 property:encoded_by ?x . ?x rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23145761
SYSTEM
transcription elongation factor GreA    Psyr_4190
Q23145761
(Q24093147,P702,c(Q863908))
action filter_type
action find
entity Q24093147
relation P702
type Q863908
Transcription elongation factor GreA Psyr 4190 encodes transcription elongation factor GreA Psyr_4190
['Q24093147', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?x WHERE { resource:Q24093147 property:P702 ?x . ?x rdf:type ontology:Q863908 }
transcription elongation factor GreA    Psyr_4190
Transcription elongation factor GreA Psyr 4190 encodes transcription elongation factor GreA Psyr_4190
transcription elongation factor GreA    Psyr_4190
action filter_type
action find
entity transcription elongation factor GreA    Psyr_4190
relation encoded by
type nucleic acid sequence
['transcription elongation factor GreA    Psyr_4190', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?x WHERE { resource:transcription_elongation_factor_GreA____Psyr_4190 property:encoded_by ?x . ?x rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23145761
P688
Q181394
USER
Which nutrient is that nucleic acid sequence an encoding of ?
(Q23145761,P688,c(Q181394))
action filter_type
action find
entity Q23145761
relation P688
type Q181394
['Q23145761', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?c WHERE { resource:Q23145761 property:P688 ?c . ?c rdf:type ontology:Q181394 }
transcription elongation factor GreA    Psyr_4190
action filter_type
action find
entity transcription elongation factor GreA    Psyr_4190
relation encodes
type nutrient
['transcription elongation factor GreA    Psyr_4190', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?c WHERE { resource:transcription_elongation_factor_GreA____Psyr_4190 property:encodes ?c . ?c rdf:type ontology:nutrient }
[]
nutrient
Q24093147
SYSTEM
transcription elongation factor GreA    Psyr_4190
Q24093147
(Q23145761,P688,c(Q181394))
action filter_type
action find
entity Q23145761
relation P688
type Q181394
The transcription elongation factor GreA Psyr 4190 is that nucleic acid sequence an encoding of
['Q23145761', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?c WHERE { resource:Q23145761 property:P688 ?c . ?c rdf:type ontology:Q181394 }
transcription elongation factor GreA    Psyr_4190
The transcription elongation factor GreA Psyr 4190 is that nucleic acid sequence an encoding of
transcription elongation factor GreA    Psyr_4190
action filter_type
action find
entity transcription elongation factor GreA    Psyr_4190
relation encodes
type nutrient
['transcription elongation factor GreA    Psyr_4190', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?c WHERE { resource:transcription_elongation_factor_GreA____Psyr_4190 property:encodes ?c . ?c rdf:type ontology:nutrient }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q24093147 Q23367962
P688
Q863908
USER
Does bifunctional ornithine acetyltransferase/N-acetylglutamate synthase    RB3255 encode that nutrient ?
(Q23367962,P688,Q24093147)
action is_in
entity Q23367962
action find
entity Q24093147
relation P688
['Q23367962', 'P688', 'Q24093147']
ASK WHERE { resource:Q24093147 property:P688 resource:Q23367962 }
transcription elongation factor GreA    Psyr_4190 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase    RB3255
action is_in
entity bifunctional ornithine acetyltransferase/N-acetylglutamate synthase    RB3255
action find
entity transcription elongation factor GreA    Psyr_4190
relation encodes
['bifunctional ornithine acetyltransferase/N-acetylglutamate synthase    RB3255', 'encodes', 'transcription elongation factor GreA    Psyr_4190']
ASK WHERE { resource:transcription_elongation_factor_GreA____Psyr_4190 property:encodes resource:bifunctional_ornithine_acetyltransferase/N-acetylglutamate_synthase____RB3255 }
[]
nucleic acid sequence
SYSTEM
NO
(Q23367962,P688,Q24093147)
action is_in
entity Q23367962
action find
entity Q24093147
relation P688
[ANSWER]
['Q23367962', 'P688', 'Q24093147']
ASK WHERE { resource:Q24093147 property:P688 resource:Q23367962 }
No
action is_in
entity bifunctional ornithine acetyltransferase/N-acetylglutamate synthase    RB3255
action find
entity transcription elongation factor GreA    Psyr_4190
relation encodes
['bifunctional ornithine acetyltransferase/N-acetylglutamate synthase    RB3255', 'encodes', 'transcription elongation factor GreA    Psyr_4190']
ASK WHERE { resource:transcription_elongation_factor_GreA____Psyr_4190 property:encodes resource:bifunctional_ornithine_acetyltransferase/N-acetylglutamate_synthase____RB3255 }
[]
Comparative Reasoning (All)
Comparative|More/Less|Single entity type
Q14349667
P682
Q1057 Q181394
USER
Which metabolic processes are approximately the same number of nutrients involved in as lipid metabolic process ?
(c(Q181394),P682,c(Q1057))
action approx
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
action count
action filter_type
action find
entity Q14349667
relation P682
type Q1057
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?s WHERE { { SELECT DISTINCT ?s ( COUNT ( ?c ) AS ?p ) WHERE { ?c property:P682 ?s . ?s rdf:type ontology:Q1057 . ?c rdf:type ontology:Q181394 } GROUP BY ?s } . { SELECT DISTINCT ( COUNT ( ?l ) AS ?k ) WHERE { resource:Q14349667 property:P682 ?l . ?l rdf:type ontology:Q1057 } } . FILTER ( ?p = ?k ) }
lipid metabolic process
action approx
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
action count
action filter_type
action find
entity lipid metabolic process
relation biological process
type metabolic process
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?s WHERE { { SELECT DISTINCT ?s ( COUNT ( ?c ) AS ?p ) WHERE { ?c property:biological_process ?s . ?s rdf:type ontology:metabolic_process . ?c rdf:type ontology:nutrient } GROUP BY ?s } . { SELECT DISTINCT ( COUNT ( ?l ) AS ?k ) WHERE { resource:lipid_metabolic_process property:biological_process ?l . ?l rdf:type ontology:metabolic_process } } . FILTER ( ?p = ?k ) }
[]
metabolic process nutrient
Q133895 Q14762260 Q14863351
SYSTEM
tricarboxylic acid cycle, carbohydrate metabolic process, signal transduction by protein phosphorylation
Q133895 Q14863351 Q14762260 Q14349667 Q14859896 Q21124620
(c(Q181394),P682,c(Q1057))
action approx
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
action count
action filter_type
action find
entity Q14349667
relation P682
type Q1057
[ANSWERS] are approximately the same number of nutrients involved in as lipid metabolic process
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?s WHERE { { SELECT DISTINCT ?s ( COUNT ( ?c ) AS ?p ) WHERE { ?c property:P682 ?s . ?s rdf:type ontology:Q1057 . ?c rdf:type ontology:Q181394 } GROUP BY ?s } . { SELECT DISTINCT ( COUNT ( ?l ) AS ?k ) WHERE { resource:Q14349667 property:P682 ?l . ?l rdf:type ontology:Q1057 } } . FILTER ( ?p = ?k ) }
tricarboxylic acid cycle signal transduction by protein phosphorylation carbohydrate metabolic process lipid metabolic process cellular amino acid metabolic process transposition, DNA-mediated
Tricarboxylic acid cycle, carbohydrate metabolic process and signal transduction by protein phosphorylation are approximately the same number of nutrients involved in as lipid metabolic process
tricarboxylic acid cycle carbohydrate metabolic process signal transduction by protein phosphorylation
action approx
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
action count
action filter_type
action find
entity lipid metabolic process
relation biological process
type metabolic process
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?s WHERE { { SELECT DISTINCT ?s ( COUNT ( ?c ) AS ?p ) WHERE { ?c property:biological_process ?s . ?s rdf:type ontology:metabolic_process . ?c rdf:type ontology:nutrient } GROUP BY ?s } . { SELECT DISTINCT ( COUNT ( ?l ) AS ?k ) WHERE { resource:lipid_metabolic_process property:biological_process ?l . ?l rdf:type ontology:metabolic_process } } . FILTER ( ?p = ?k ) }
[]
Comparative Reasoning (All)
Comparative|More/Less|Single entity type|Incomplete
Q14913439
P682
Q1057 Q181394
USER
And how about organophosphate metabolic process?
(c(Q181394),P682,c(Q1057))
action approx
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
action count
action filter_type
action find
entity Q14913439
relation P682
type Q1057
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?e WHERE { { SELECT DISTINCT ?e ( COUNT ( ?x ) AS ?s ) WHERE { ?x property:P682 ?e . ?x rdf:type ontology:Q181394 . ?e rdf:type ontology:Q1057 } GROUP BY ?e } . { SELECT DISTINCT ( COUNT ( ?h ) AS ?f ) WHERE { ?h rdf:type ontology:Q1057 . resource:Q14913439 property:P682 ?h } } . FILTER ( ?s = ?f ) }
organophosphate metabolic process
action approx
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
action count
action filter_type
action find
entity organophosphate metabolic process
relation biological process
type metabolic process
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?e WHERE { { SELECT DISTINCT ?e ( COUNT ( ?x ) AS ?s ) WHERE { ?x property:biological_process ?e . ?x rdf:type ontology:nutrient . ?e rdf:type ontology:metabolic_process } GROUP BY ?e } . { SELECT DISTINCT ( COUNT ( ?h ) AS ?f ) WHERE { ?h rdf:type ontology:metabolic_process . resource:organophosphate_metabolic_process property:biological_process ?h } } . FILTER ( ?s = ?f ) }
[]
metabolic process nutrient
Q22251129 Q14905693 Q133895
SYSTEM
proteolysis in other organism, translational initiation, tricarboxylic acid cycle
Q14864889 Q14907628 Q14913194 Q22274727 Q22251129 Q14905693 Q14860777 Q21134382 Q21097138 Q14819379 Q21759902 Q21133617 Q133895 Q21157940 Q21116483 Q14863351 Q21102358 Q21114210 Q14907178 Q21121151 Q14880758 Q21761098 Q22275051 Q21100626 Q14913439 Q14916189 Q21159531 Q21111970 Q898365 Q22274640 Q22279483 Q21119973 Q14865941 Q22282595 Q14907180 Q14907181 Q14905125 Q21096256 Q14863432 Q14902250 Q21124879 Q14909347 Q15313450 Q179924 Q21101220 Q21095286 Q14863986 Q14358591 Q838181 Q21116485 Q14859896 Q21103172 Q22276072 Q14914233 Q14897831 Q14645736 Q14864262 Q14859628 Q14819787 Q21119193 Q22274791 Q14819781 Q22279537 Q22283508 Q14327719 Q22279533 Q21124620 Q14860507 Q21112195 Q14890104 Q14864417 Q14864414 Q21759328 Q900386 Q14912265 Q21760838
(c(Q181394),P682,c(Q1057))
action approx
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
action count
action filter_type
action find
entity Q14913439
relation P682
type Q1057
[ANSWERS]
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?e WHERE { { SELECT DISTINCT ?e ( COUNT ( ?x ) AS ?s ) WHERE { ?x property:P682 ?e . ?x rdf:type ontology:Q181394 . ?e rdf:type ontology:Q1057 } GROUP BY ?e } . { SELECT DISTINCT ( COUNT ( ?h ) AS ?f ) WHERE { ?h rdf:type ontology:Q1057 . resource:Q14913439 property:P682 ?h } } . FILTER ( ?s = ?f ) }
cellular aromatic compound metabolic process multicellular organism metabolic process cellular ketone body metabolic process secondary metabolic process proteolysis in other organism translational initiation hormone biosynthetic process cofactor metabolic process cellular aldehyde metabolic process one-carbon metabolic process carbon fixation actin modification tricarboxylic acid cycle nitrobenzene metabolic process lymphotoxin A biosynthetic process signal transduction by protein phosphorylation sulfur compound metabolic process regulation of translational initiation by eIF2 alpha dephosphorylation interleukin-2 biosynthetic process reactive nitrogen species metabolic process nucleobase-containing compound metabolic process photosynthesis halogenated hydrocarbon metabolic process peptidyl-lysine modification to peptidyl-hypusine organophosphate metabolic process organic acid metabolic process selenium compound metabolic process reactive oxygen species biosynthetic process glycosylation cellular biosynthetic process cellular macromolecule metabolic process oxygen metabolic process connective tissue growth factor biosynthetic process ketone body metabolic process interleukin-13 biosynthetic process granulocyte macrophage colony-stimulating factor biosynthetic process neurotransmitter metabolic process cellular carbohydrate metabolic process reactive oxygen species metabolic process telomere maintenance via semi-conservative replication interleukin-8 biosynthetic process flavonoid metabolic process methylation-dependent chromatin silencing bioluminescence wax biosynthetic process amyloid fibril formation hormone catabolic process xenobiotic metabolic process respiratory burst interleukin-6 biosynthetic process cellular amino acid metabolic process DNA protection glycosyl compound metabolic process phosphatidic acid metabolic process isotype switching thyroid hormone metabolic process protein metabolic process cellular lipid metabolic process peptide hormone processing cellular modified amino acid metabolic process organic cyclic compound metabolic process generation of precursor metabolites and energy viral RNA genome replication IRES-dependent viral translational initiation small molecule metabolic process transposon integration transposition, DNA-mediated receptor internalization patched ligand maturation toxin metabolic process heterocycle metabolic process drug metabolic process cellular catabolic process demethylation cellular ketone metabolic process phosphorus metabolic process
proteolysis in other organism translational initiation tricarboxylic acid cycle
action approx
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
action count
action filter_type
action find
entity organophosphate metabolic process
relation biological process
type metabolic process
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?e WHERE { { SELECT DISTINCT ?e ( COUNT ( ?x ) AS ?s ) WHERE { ?x property:biological_process ?e . ?x rdf:type ontology:nutrient . ?e rdf:type ontology:metabolic_process } GROUP BY ?e } . { SELECT DISTINCT ( COUNT ( ?h ) AS ?f ) WHERE { ?h rdf:type ontology:metabolic_process . resource:organophosphate_metabolic_process property:biological_process ?h } } . FILTER ( ?s = ?f ) }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q22270574 Q24093147
P688
Q863908
USER
Which nucleic acid sequences encode transcription elongation factor GreA    Psyr_4190 or hypothetical protein    NMB0625 ?
OR((c(Q863908),P688,Q24093147), (c(Q863908),P688,Q22270574))
action filter_type
action union
action find_reverse
entity Q24093147
relation P688
action find_reverse
entity Q22270574
relation P688
type Q863908
{'OR': [[{'concept': 'Q863908'}, 'P688', 'Q24093147'], [{'concept': 'Q863908'}, 'P688', 'Q22270574']]}
SELECT DISTINCT ?k WHERE { { { ?k property:P688 resource:Q24093147 } UNION { ?k property:P688 resource:Q22270574 } } . ?k rdf:type ontology:Q863908 }
hypothetical protein    NMB0625 transcription elongation factor GreA    Psyr_4190
action filter_type
action union
action find_reverse
entity transcription elongation factor GreA    Psyr_4190
relation encodes
action find_reverse
entity hypothetical protein    NMB0625
relation encodes
type nucleic acid sequence
{'OR': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'transcription elongation factor GreA    Psyr_4190'], [{'concept': 'nucleic acid sequence'}, 'encodes', 'hypothetical protein    NMB0625']]}
SELECT DISTINCT ?k WHERE { { { ?k property:encodes resource:transcription_elongation_factor_GreA____Psyr_4190 } UNION { ?k property:encodes resource:hypothetical_protein____NMB0625 } } . ?k rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23145761 Q22267517
SYSTEM
transcription elongation factor GreA    Psyr_4190, hypothetical protein    NMB0625
Q23145761 Q22267517
OR((c(Q863908),P688,Q24093147), (c(Q863908),P688,Q22270574))
action filter_type
action union
action find_reverse
entity Q24093147
relation P688
action find_reverse
entity Q22270574
relation P688
type Q863908
[ANSWERS]
{'OR': [[{'concept': 'Q863908'}, 'P688', 'Q24093147'], [{'concept': 'Q863908'}, 'P688', 'Q22270574']]}
SELECT DISTINCT ?k WHERE { { { ?k property:P688 resource:Q24093147 } UNION { ?k property:P688 resource:Q22270574 } } . ?k rdf:type ontology:Q863908 }
transcription elongation factor GreA    Psyr_4190 hypothetical protein    NMB0625
And transcription elongation factor GreA Psyr 4190 and hypothetical protein NMB0625 encode transcription elongation factor GreA Psyr_4190 or hypothetical protein NMB0625
transcription elongation factor GreA    Psyr_4190 hypothetical protein    NMB0625
action filter_type
action union
action find_reverse
entity transcription elongation factor GreA    Psyr_4190
relation encodes
action find_reverse
entity hypothetical protein    NMB0625
relation encodes
type nucleic acid sequence
{'OR': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'transcription elongation factor GreA    Psyr_4190'], [{'concept': 'nucleic acid sequence'}, 'encodes', 'hypothetical protein    NMB0625']]}
SELECT DISTINCT ?k WHERE { { { ?k property:encodes resource:transcription_elongation_factor_GreA____Psyr_4190 } UNION { ?k property:encodes resource:hypothetical_protein____NMB0625 } } . ?k rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Ellipsis)
Incomplete|object parent is changed, subject and predicate remain same
Q22270574
Q631147
USER
And which infraspecific name?
(Q22270574,P703,c(Q631147))
action filter_type
action find
entity Q22270574
relation P703
type Q631147
['Q22270574', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?c WHERE { resource:Q22270574 property:P703 ?c . ?c rdf:type ontology:Q631147 }
hypothetical protein    NMB0625
action filter_type
action find
entity hypothetical protein    NMB0625
relation found in taxon
type infraspecific name
['hypothetical protein    NMB0625', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?c WHERE { resource:hypothetical_protein____NMB0625 property:found_in_taxon ?c . ?c rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102922
SYSTEM
Neisseria meningitidis MC58
Q21102922
(Q22270574,P703,c(Q631147))
action filter_type
action find
entity Q22270574
relation P703
type Q631147
[ANSWER]
['Q22270574', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?c WHERE { resource:Q22270574 property:P703 ?c . ?c rdf:type ontology:Q631147 }
Neisseria meningitidis MC58
Neisseria meningitidis MC58
action filter_type
action find
entity hypothetical protein    NMB0625
relation found in taxon
type infraspecific name
['hypothetical protein    NMB0625', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?c WHERE { resource:hypothetical_protein____NMB0625 property:found_in_taxon ?c . ?c rdf:type ontology:infraspecific_name }
[]