Simple Question (Direct)
Simple Question
Q23631565
P682
Q1057
USER
What is the metabolic process that sensor protein fixL    RB4759 is involved in ?
(Q23631565,P682,c(Q1057))
action filter_type
action find
entity Q23631565
relation P682
type Q1057
['Q23631565', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?l WHERE { resource:Q23631565 property:P682 ?l . ?l rdf:type ontology:Q1057 }
sensor protein fixL    RB4759
action filter_type
action find
entity sensor protein fixL    RB4759
relation biological process
type metabolic process
['sensor protein fixL    RB4759', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?l WHERE { resource:sensor_protein_fixL____RB4759 property:biological_process ?l . ?l rdf:type ontology:metabolic_process }
[]
metabolic process
Q14863351
SYSTEM
signal transduction by protein phosphorylation
Q14863351
(Q23631565,P682,c(Q1057))
action filter_type
action find
entity Q23631565
relation P682
type Q1057
The metabolic process that sensor protein fixL RB 4759 is involved in is l [ANSWER]
['Q23631565', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?l WHERE { resource:Q23631565 property:P682 ?l . ?l rdf:type ontology:Q1057 }
signal transduction by protein phosphorylation
The metabolic process that sensor protein fixL RB 4759 is involved in is l signal transduction by protein phosphorylation
signal transduction by protein phosphorylation
action filter_type
action find
entity sensor protein fixL    RB4759
relation biological process
type metabolic process
['sensor protein fixL    RB4759', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?l WHERE { resource:sensor_protein_fixL____RB4759 property:biological_process ?l . ?l rdf:type ontology:metabolic_process }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23631565
P681
Q5058355
USER
What is a component of sensor protein fixL    RB4759 ?
(Q23631565,P681,c(Q5058355))
action filter_type
action find
entity Q23631565
relation P681
type Q5058355
['Q23631565', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:Q5058355 . resource:Q23631565 property:P681 ?x }
sensor protein fixL    RB4759
action filter_type
action find
entity sensor protein fixL    RB4759
relation cell component
type cellular component
['sensor protein fixL    RB4759', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:cellular_component . resource:sensor_protein_fixL____RB4759 property:cell_component ?x }
[]
cellular component
Q3824358
SYSTEM
intracellular
Q3824358
(Q23631565,P681,c(Q5058355))
action filter_type
action find
entity Q23631565
relation P681
type Q5058355
A component of sensor protein fixL RB4759 is an [ANSWER]
['Q23631565', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:Q5058355 . resource:Q23631565 property:P681 ?x }
intracellular
A component of sensor protein fixL RB4759 is an intracellular
intracellular
action filter_type
action find
entity sensor protein fixL    RB4759
relation cell component
type cellular component
['sensor protein fixL    RB4759', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:cellular_component . resource:sensor_protein_fixL____RB4759 property:cell_component ?x }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q3824358
P361
Q5058355
USER
Which cellular component is that one a component of ?
(Q3824358,P361,c(Q5058355))
action filter_type
action find
entity Q3824358
relation P361
type Q5058355
['Q3824358', 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ?m WHERE { resource:Q3824358 property:P361 ?m . ?m rdf:type ontology:Q5058355 }
intracellular
action filter_type
action find
entity intracellular
relation part of
type cellular component
['intracellular', 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ?m WHERE { resource:intracellular property:part_of ?m . ?m rdf:type ontology:cellular_component }
[]
cellular component
Q22330431
SYSTEM
unencapsulated part of cell
Q22330431
(Q3824358,P361,c(Q5058355))
action filter_type
action find
entity Q3824358
relation P361
type Q5058355
[ANSWER] is that one a component of
['Q3824358', 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ?m WHERE { resource:Q3824358 property:P361 ?m . ?m rdf:type ontology:Q5058355 }
unencapsulated part of cell
Unencapsulated part of cell is that one a component of
unencapsulated part of cell
action filter_type
action find
entity intracellular
relation part of
type cellular component
['intracellular', 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ?m WHERE { resource:intracellular property:part_of ?m . ?m rdf:type ontology:cellular_component }
[]
Comparative Reasoning (All)
Comparative|More/Less|Single entity type
Q24787249
P361
Q15989253 Q5058355
USER
Which parts are greater number of cellular components a component of than Iron hydrogenase, subset ?
(c(Q5058355),P361,c(Q15989253))
action greater
action find_reverse_tuple_counts
relation P361
type Q15989253
type Q5058355
action count
action filter_type
action find
entity Q24787249
relation P361
type Q15989253
[{'concept': 'Q5058355'}, 'P361', {'concept': 'Q15989253'}]
SELECT DISTINCT ?o WHERE { { SELECT DISTINCT ?o ( COUNT ( ?b ) AS ?u ) WHERE { ?b property:P361 ?o . ?o rdf:type ontology:Q15989253 . ?b rdf:type ontology:Q5058355 } GROUP BY ?o } . { SELECT DISTINCT ( COUNT ( ?z ) AS ?v ) WHERE { resource:Q24787249 property:P361 ?z . ?z rdf:type ontology:Q15989253 } } . FILTER ( ?u > ?v ) }
Iron hydrogenase, subset
action greater
action find_reverse_tuple_counts
relation part of
type part
type cellular component
action count
action filter_type
action find
entity Iron hydrogenase, subset
relation part of
type part
[{'concept': 'cellular component'}, 'part of', {'concept': 'part'}]
SELECT DISTINCT ?o WHERE { { SELECT DISTINCT ?o ( COUNT ( ?b ) AS ?u ) WHERE { ?b property:part_of ?o . ?o rdf:type ontology:part . ?b rdf:type ontology:cellular_component } GROUP BY ?o } . { SELECT DISTINCT ( COUNT ( ?z ) AS ?v ) WHERE { resource:Iron_hydrogenase,_subset property:part_of ?z . ?z rdf:type ontology:part } } . FILTER ( ?u > ?v ) }
[]
part cellular component
Q39572 Q22328948 Q165963
SYSTEM
mitochondrion, virion, plastid
Q14349455 Q22328948 Q22327470 Q187181 Q165963 Q45948 Q14645596 Q39572
(c(Q5058355),P361,c(Q15989253))
action greater
action find_reverse_tuple_counts
relation P361
type Q15989253
type Q5058355
action count
action filter_type
action find
entity Q24787249
relation P361
type Q15989253
[ANSWERS] are greater number of cellular components a component of than Iron hydrogenase, subset
[{'concept': 'Q5058355'}, 'P361', {'concept': 'Q15989253'}]
SELECT DISTINCT ?o WHERE { { SELECT DISTINCT ?o ( COUNT ( ?b ) AS ?u ) WHERE { ?b property:P361 ?o . ?o rdf:type ontology:Q15989253 . ?b rdf:type ontology:Q5058355 } GROUP BY ?o } . { SELECT DISTINCT ( COUNT ( ?z ) AS ?v ) WHERE { resource:Q24787249 property:P361 ?z . ?z rdf:type ontology:Q15989253 } } . FILTER ( ?u > ?v ) }
membrane virion mitochondrion-associated adherens complex synapse plastid organelle extracellular region mitochondrion
Mitochondrion, virion and plastid are greater number of cellular components a component of than Iron hydrogenase, subset
mitochondrion virion plastid
action greater
action find_reverse_tuple_counts
relation part of
type part
type cellular component
action count
action filter_type
action find
entity Iron hydrogenase, subset
relation part of
type part
[{'concept': 'cellular component'}, 'part of', {'concept': 'part'}]
SELECT DISTINCT ?o WHERE { { SELECT DISTINCT ?o ( COUNT ( ?b ) AS ?u ) WHERE { ?b property:part_of ?o . ?o rdf:type ontology:part . ?b rdf:type ontology:cellular_component } GROUP BY ?o } . { SELECT DISTINCT ( COUNT ( ?z ) AS ?v ) WHERE { resource:Iron_hydrogenase,_subset property:part_of ?z . ?z rdf:type ontology:part } } . FILTER ( ?u > ?v ) }
[]
Comparative Reasoning (All)
Comparative|More/Less|Single entity type|Incomplete
Q24721344
P361
Q15989253 Q5058355
USER
And how about Electron transfer flavoprotein, alpha subunit, C-terminal?
(c(Q5058355),P361,c(Q15989253))
action greater
action find_reverse_tuple_counts
relation P361
type Q15989253
type Q5058355
action count
action filter_type
action find
entity Q24721344
relation P361
type Q15989253
[{'concept': 'Q5058355'}, 'P361', {'concept': 'Q15989253'}]
SELECT DISTINCT ?r WHERE { { SELECT DISTINCT ?r ( COUNT ( ?v ) AS ?z ) WHERE { ?r rdf:type ontology:Q15989253 . ?v rdf:type ontology:Q5058355 . ?v property:P361 ?r } GROUP BY ?r } . { SELECT DISTINCT ( COUNT ( ?u ) AS ?q ) WHERE { resource:Q24721344 property:P361 ?u . ?u rdf:type ontology:Q15989253 } } . FILTER ( ?z > ?q ) }
Electron transfer flavoprotein, alpha subunit, C-terminal
action greater
action find_reverse_tuple_counts
relation part of
type part
type cellular component
action count
action filter_type
action find
entity Electron transfer flavoprotein, alpha subunit, C-terminal
relation part of
type part
[{'concept': 'cellular component'}, 'part of', {'concept': 'part'}]
SELECT DISTINCT ?r WHERE { { SELECT DISTINCT ?r ( COUNT ( ?v ) AS ?z ) WHERE { ?r rdf:type ontology:part . ?v rdf:type ontology:cellular_component . ?v property:part_of ?r } GROUP BY ?r } . { SELECT DISTINCT ( COUNT ( ?u ) AS ?q ) WHERE { resource:Electron_transfer_flavoprotein,_alpha_subunit,_C-terminal property:part_of ?u . ?u rdf:type ontology:part } } . FILTER ( ?z > ?q ) }
[]
part cellular component
Q39572 Q22328948 Q165963
SYSTEM
mitochondrion, virion, plastid
Q14349455 Q22328948 Q22327470 Q187181 Q165963 Q45948 Q14645596 Q39572
(c(Q5058355),P361,c(Q15989253))
action greater
action find_reverse_tuple_counts
relation P361
type Q15989253
type Q5058355
action count
action filter_type
action find
entity Q24721344
relation P361
type Q15989253
[ANSWERS]
[{'concept': 'Q5058355'}, 'P361', {'concept': 'Q15989253'}]
SELECT DISTINCT ?r WHERE { { SELECT DISTINCT ?r ( COUNT ( ?v ) AS ?z ) WHERE { ?r rdf:type ontology:Q15989253 . ?v rdf:type ontology:Q5058355 . ?v property:P361 ?r } GROUP BY ?r } . { SELECT DISTINCT ( COUNT ( ?u ) AS ?q ) WHERE { resource:Q24721344 property:P361 ?u . ?u rdf:type ontology:Q15989253 } } . FILTER ( ?z > ?q ) }
membrane virion mitochondrion-associated adherens complex synapse plastid organelle extracellular region mitochondrion
mitochondrion virion plastid
action greater
action find_reverse_tuple_counts
relation part of
type part
type cellular component
action count
action filter_type
action find
entity Electron transfer flavoprotein, alpha subunit, C-terminal
relation part of
type part
[{'concept': 'cellular component'}, 'part of', {'concept': 'part'}]
SELECT DISTINCT ?r WHERE { { SELECT DISTINCT ?r ( COUNT ( ?v ) AS ?z ) WHERE { ?r rdf:type ontology:part . ?v rdf:type ontology:cellular_component . ?v property:part_of ?r } GROUP BY ?r } . { SELECT DISTINCT ( COUNT ( ?u ) AS ?q ) WHERE { resource:Electron_transfer_flavoprotein,_alpha_subunit,_C-terminal property:part_of ?u . ?u rdf:type ontology:part } } . FILTER ( ?z > ?q ) }
[]
Quantitative Reasoning (All)
Quantitative|Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P361
Q5058355 Q223557 Q5058355
USER
Which cellular components are a component of around 3 cellular components or physical objects ?
(c(Q5058355),P361,c(Q5058355)|c(Q223557))
action approx
action union
action find_tuple_counts
relation P361
type Q5058355
type Q5058355
action find_tuple_counts
relation P361
type Q5058355
type Q223557
value 3
[{'concept': 'Q5058355'}, 'P361', [{'concept': 'Q5058355'}, {'concept': 'Q223557'}]]
SELECT DISTINCT ?f WHERE { { SELECT DISTINCT ( COUNT ( ?j ) AS ?k ) ?f WHERE { { ?f property:P361 ?j . ?f rdf:type ontology:Q5058355 . ?j rdf:type ontology:Q5058355 } UNION { ?f rdf:type ontology:Q5058355 . ?j rdf:type ontology:Q223557 . ?f property:P361 ?j } } GROUP BY ?f } . FILTER ( ?k = 3 ) }
action approx
action union
action find_tuple_counts
relation part of
type cellular component
type cellular component
action find_tuple_counts
relation part of
type cellular component
type physical object
value 3
[{'concept': 'cellular component'}, 'part of', [{'concept': 'cellular component'}, {'concept': 'physical object'}]]
SELECT DISTINCT ?f WHERE { { SELECT DISTINCT ( COUNT ( ?j ) AS ?k ) ?f WHERE { { ?f property:part_of ?j . ?f rdf:type ontology:cellular_component . ?j rdf:type ontology:cellular_component } UNION { ?f rdf:type ontology:cellular_component . ?j rdf:type ontology:physical_object . ?f property:part_of ?j } } GROUP BY ?f } . FILTER ( ?k = 3 ) }
[]
cellular component physical object cellular component
Q29548
SYSTEM
plasma membrane
Q29548
(c(Q5058355),P361,c(Q5058355)|c(Q223557))
action approx
action union
action find_tuple_counts
relation P361
type Q5058355
type Q5058355
action find_tuple_counts
relation P361
type Q5058355
type Q223557
value 3
[ANSWER] is a component of around 3 cellular components or physical objects
[{'concept': 'Q5058355'}, 'P361', [{'concept': 'Q5058355'}, {'concept': 'Q223557'}]]
SELECT DISTINCT ?f WHERE { { SELECT DISTINCT ( COUNT ( ?j ) AS ?k ) ?f WHERE { { ?f property:P361 ?j . ?f rdf:type ontology:Q5058355 . ?j rdf:type ontology:Q5058355 } UNION { ?f rdf:type ontology:Q5058355 . ?j rdf:type ontology:Q223557 . ?f property:P361 ?j } } GROUP BY ?f } . FILTER ( ?k = 3 ) }
plasma membrane
Plasma membrane is a component of around 3 cellular components or physical objects
plasma membrane
action approx
action union
action find_tuple_counts
relation part of
type cellular component
type cellular component
action find_tuple_counts
relation part of
type cellular component
type physical object
value 3
[{'concept': 'cellular component'}, 'part of', [{'concept': 'cellular component'}, {'concept': 'physical object'}]]
SELECT DISTINCT ?f WHERE { { SELECT DISTINCT ( COUNT ( ?j ) AS ?k ) ?f WHERE { { ?f property:part_of ?j . ?f rdf:type ontology:cellular_component . ?j rdf:type ontology:cellular_component } UNION { ?f rdf:type ontology:cellular_component . ?j rdf:type ontology:physical_object . ?f property:part_of ?j } } GROUP BY ?f } . FILTER ( ?k = 3 ) }
[]
Comparative Reasoning (All)
Comparative|More/Less|Mult. entity type|Indirect
P361
Q5058355 Q5058355 Q15989253
USER
Which cellular components are less number of cellular components or parts a component of than that cellular component ?
(c(Q5058355)|c(Q15989253),P361,c(Q5058355))
action less
action union
action find_reverse_tuple_counts
relation P361
type Q5058355
type Q5058355
action find_reverse_tuple_counts
relation P361
type Q5058355
type Q15989253
action count
action filter_multi_types
action find_reverse
entity Q29548
relation P361
type Q5058355
type Q15989253
[[{'concept': 'Q5058355'}, {'concept': 'Q15989253'}], 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ?w WHERE { { SELECT DISTINCT ?w ( COUNT ( ?v ) AS ?e ) WHERE { ?v rdf:type ?g . VALUES ( ?g ) { ( ontology:Q5058355 ) ( ontology:Q15989253 ) } } GROUP BY ?w } . { SELECT DISTINCT ( COUNT ( ?d ) AS ?r ) WHERE { ?d property:P361 resource:Q29548 . { { ?d rdf:type ontology:Q5058355 } UNION { ?d rdf:type ontology:Q15989253 } } } } . FILTER ( ?e < ?r ) }
action less
action union
action find_reverse_tuple_counts
relation part of
type cellular component
type cellular component
action find_reverse_tuple_counts
relation part of
type cellular component
type part
action count
action filter_multi_types
action find_reverse
entity plasma membrane
relation part of
type cellular component
type part
[[{'concept': 'cellular component'}, {'concept': 'part'}], 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ?w WHERE { { SELECT DISTINCT ?w ( COUNT ( ?v ) AS ?e ) WHERE { ?v rdf:type ?g . VALUES ( ?g ) { ( ontology:cellular_component ) ( ontology:part ) } } GROUP BY ?w } . { SELECT DISTINCT ( COUNT ( ?d ) AS ?r ) WHERE { ?d property:part_of resource:plasma_membrane . { { ?d rdf:type ontology:cellular_component } UNION { ?d rdf:type ontology:part } } } } . FILTER ( ?e < ?r ) }
[]
cellular component cellular component part
Q14912978 Q22329159 Q22329076
SYSTEM
mitochondrial nucleoid, ventral disc microtubule array, plastid nucleoid
Q22329450 Q15320191 Q14912978 Q14864171 Q14876131 Q1604780 Q22327622 Q14860843 Q22327686 Q22327683 Q22330482 Q22326188 Q22330431 Q189094 Q24576572 Q3824358 Q14864391 Q22328085 Q21095183 Q14905221 Q22327411 Q22327418 Q22329159 Q22329397 Q14353100 Q22327884 Q21423046 Q47263 Q22327652 Q22329848 Q180436 Q22329846 Q22329160 Q24570682 Q22330051 Q22327498 Q14911512 Q14819352 Q22327494 Q22327889 Q14762605 Q14864266 Q21750262 Q21198990 Q776995 Q22329401 Q24570673 Q14349538 Q22328884 Q22329076 Q22330231 Q5419646 Q21126899 Q22325459 Q22327714 Q22327805 Q21107481 Q22327505 Q21102478 Q22327502 Q22327500 Q138639 Q22329104 Q21095308 Q14864857 Q1065756 Q79927 Q180951 Q14864520 Q22328105 Q14860546 Q14860540 Q14864866 Q6414172 Q193825
(c(Q5058355)|c(Q15989253),P361,c(Q5058355))
action less
action union
action find_reverse_tuple_counts
relation P361
type Q5058355
type Q5058355
action find_reverse_tuple_counts
relation P361
type Q5058355
type Q15989253
action count
action filter_multi_types
action find_reverse
entity Q29548
relation P361
type Q5058355
type Q15989253
[ANSWERS] are less number of cellular components or parts a component of than that cellular component
[[{'concept': 'Q5058355'}, {'concept': 'Q15989253'}], 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ?w WHERE { { SELECT DISTINCT ?w ( COUNT ( ?v ) AS ?e ) WHERE { ?v rdf:type ?g . VALUES ( ?g ) { ( ontology:Q5058355 ) ( ontology:Q15989253 ) } } GROUP BY ?w } . { SELECT DISTINCT ( COUNT ( ?d ) AS ?r ) WHERE { ?d property:P361 resource:Q29548 . { { ?d rdf:type ontology:Q5058355 } UNION { ?d rdf:type ontology:Q15989253 } } } } . FILTER ( ?e < ?r ) }
lateral part of cell synaptic cleft mitochondrial nucleoid cell periphery compact myelin hemidesmosome side of membrane nuclear outer membrane prospore membrane eisosome ventral disc supernumerary microtubule array aster unencapsulated part of cell cell surface presynaptic endosome membrane intracellular intracellular organelle external encapsulating structure dendritic spine head symbiont-containing vacuole membrane extracellular space of host host ventral disc microtubule array cluster of actin-based cell projections cell projection cellular bud membrane-bounded organelle chloroplast whole membrane icosahedral viral capsid, collar cilium icosahedral viral capsid, neck ventral disc overlap zone spine apparatus membrane dinoflagellate hypocone postsynaptic endocytic zone stereocilium respiratory chain postsynaptic endosome cell trailing edge midbody cell-substrate junction cell division site periplasmic space neuromuscular junction pellicle postsynaptic endosome membrane apical part of cell organellar ribosome plastid nucleoid dinoflagellate epicone excitatory synapse cell tip sperm individualization complex coated membrane photosynthetic membrane site of polarized growth presynaptic endosome other organism cell presynaptic active zone cytoplasmic component presynaptic endocytic zone peroxisome germ tube retromer complex cell leading edge melanosome endoplasmic reticulum chromatin extrinsic component of membrane cell septum basal part of cell clathrin-coated pit cell body kinocilium extracellular matrix
Mitochondrial nucleoid, ventral disc microtubule array and plastid nucleoid are less number of cellular components or parts a component of than that cellular component
mitochondrial nucleoid ventral disc microtubule array plastid nucleoid
action less
action union
action find_reverse_tuple_counts
relation part of
type cellular component
type cellular component
action find_reverse_tuple_counts
relation part of
type cellular component
type part
action count
action filter_multi_types
action find_reverse
entity plasma membrane
relation part of
type cellular component
type part
[[{'concept': 'cellular component'}, {'concept': 'part'}], 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ?w WHERE { { SELECT DISTINCT ?w ( COUNT ( ?v ) AS ?e ) WHERE { ?v rdf:type ?g . VALUES ( ?g ) { ( ontology:cellular_component ) ( ontology:part ) } } GROUP BY ?w } . { SELECT DISTINCT ( COUNT ( ?d ) AS ?r ) WHERE { ?d property:part_of resource:plasma_membrane . { { ?d rdf:type ontology:cellular_component } UNION { ?d rdf:type ontology:part } } } } . FILTER ( ?e < ?r ) }
[]