Simple Question (Direct)
Simple Question
Q23462625
P702
Q863908
USER
What is the gene that encodes cell division protein FtsA    DVU2500 ?
(Q23462625,P702,c(Q863908))
action filter_type
action find
entity Q23462625
relation P702
type Q863908
['Q23462625', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?y WHERE { resource:Q23462625 property:P702 ?y . ?y rdf:type ontology:Q863908 }
cell division protein FtsA    DVU2500
action filter_type
action find
entity cell division protein FtsA    DVU2500
relation encoded by
type nucleic acid sequence
['cell division protein FtsA    DVU2500', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?y WHERE { resource:cell_division_protein_FtsA____DVU2500 property:encoded_by ?y . ?y rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23324717
SYSTEM
cell division protein FtsA    DVU2500
Q23324717
(Q23462625,P702,c(Q863908))
action filter_type
action find
entity Q23462625
relation P702
type Q863908
The gene that encodes cell division protein FtsA DVU2500 is codes cell division protein FtsA DVU2500
['Q23462625', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?y WHERE { resource:Q23462625 property:P702 ?y . ?y rdf:type ontology:Q863908 }
cell division protein FtsA    DVU2500
The gene that encodes cell division protein FtsA DVU2500 is codes cell division protein FtsA DVU2500
cell division protein FtsA    DVU2500
action filter_type
action find
entity cell division protein FtsA    DVU2500
relation encoded by
type nucleic acid sequence
['cell division protein FtsA    DVU2500', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?y WHERE { resource:cell_division_protein_FtsA____DVU2500 property:encoded_by ?y . ?y rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23462625
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(c(Q863908),P688,Q23324717)
action filter_type
action find_reverse
entity Q23462625
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q23324717']
SELECT DISTINCT ?i WHERE { ?i property:P688 resource:Q23462625 . ?i rdf:type ontology:Q863908 }
cell division protein FtsA    DVU2500
action filter_type
action find_reverse
entity cell division protein FtsA    DVU2500
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'cell division protein FtsA    DVU2500']
SELECT DISTINCT ?i WHERE { ?i property:encodes resource:cell_division_protein_FtsA____DVU2500 . ?i rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23324717
SYSTEM
cell division protein FtsA    DVU2500
Q23324717
(c(Q863908),P688,Q23324717)
action filter_type
action find_reverse
entity Q23462625
relation P688
type Q863908
Cell division protein FtsA DVU2500 encodes that nutrient
[{'concept': 'Q863908'}, 'P688', 'Q23324717']
SELECT DISTINCT ?i WHERE { ?i property:P688 resource:Q23462625 . ?i rdf:type ontology:Q863908 }
cell division protein FtsA    DVU2500
Cell division protein FtsA DVU2500 encodes that nutrient
cell division protein FtsA    DVU2500
action filter_type
action find_reverse
entity cell division protein FtsA    DVU2500
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'cell division protein FtsA    DVU2500']
SELECT DISTINCT ?i WHERE { ?i property:encodes resource:cell_division_protein_FtsA____DVU2500 . ?i rdf:type ontology:nucleic_acid_sequence }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Logical operators
Q23462625
P681
Q15989253 Q5058355
USER
How many parts or cellular components are components of cell division protein FtsA    DVU2500 ?
(Q23462625,P681,c(Q15989253)) (Q23462625,P681,c(Q5058355))
action count
action union
action filter_type
action find
entity Q23462625
relation P681
type Q15989253
action filter_type
action find
entity Q23462625
relation P681
type Q5058355
['Q23462625', 'P681', {'concept': 'Q15989253'}] ['Q23462625', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ( COUNT ( ?t ) AS ?a ) WHERE { { resource:Q23462625 property:P681 ?t . ?t rdf:type ontology:Q15989253 } UNION { resource:Q23462625 property:P681 ?t . ?t rdf:type ontology:Q5058355 } }
cell division protein FtsA    DVU2500
action count
action union
action filter_type
action find
entity cell division protein FtsA    DVU2500
relation cell component
type part
action filter_type
action find
entity cell division protein FtsA    DVU2500
relation cell component
type cellular component
['cell division protein FtsA    DVU2500', 'cell component', {'concept': 'part'}] ['cell division protein FtsA    DVU2500', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ( COUNT ( ?t ) AS ?a ) WHERE { { resource:cell_division_protein_FtsA____DVU2500 property:cell_component ?t . ?t rdf:type ontology:part } UNION { resource:cell_division_protein_FtsA____DVU2500 property:cell_component ?t . ?t rdf:type ontology:cellular_component } }
[]
part cellular component
SYSTEM
3
Q29548 Q21750262 Q14349455
(Q23462625,P681,c(Q15989253)) (Q23462625,P681,c(Q5058355))
action count
action union
action filter_type
action find
entity Q23462625
relation P681
type Q15989253
action filter_type
action find
entity Q23462625
relation P681
type Q5058355
[ANSWER]
['Q23462625', 'P681', {'concept': 'Q15989253'}] ['Q23462625', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ( COUNT ( ?t ) AS ?a ) WHERE { { resource:Q23462625 property:P681 ?t . ?t rdf:type ontology:Q15989253 } UNION { resource:Q23462625 property:P681 ?t . ?t rdf:type ontology:Q5058355 } }
plasma membrane cell division site membrane
3
action count
action union
action filter_type
action find
entity cell division protein FtsA    DVU2500
relation cell component
type part
action filter_type
action find
entity cell division protein FtsA    DVU2500
relation cell component
type cellular component
['cell division protein FtsA    DVU2500', 'cell component', {'concept': 'part'}] ['cell division protein FtsA    DVU2500', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ( COUNT ( ?t ) AS ?a ) WHERE { { resource:cell_division_protein_FtsA____DVU2500 property:cell_component ?t . ?t rdf:type ontology:part } UNION { resource:cell_division_protein_FtsA____DVU2500 property:cell_component ?t . ?t rdf:type ontology:cellular_component } }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q21629494 Q23324717
P702
Q181394
USER
Which nutrients do cell division protein FtsA    DVU2500 or acyl-CoA thioesterase YbgC    HP0496 encode ?
OR((c(Q181394),P702,Q23324717), (c(Q181394),P702,Q21629494))
action filter_type
action union
action find_reverse
entity Q23324717
relation P702
action find_reverse
entity Q21629494
relation P702
type Q181394
{'OR': [[{'concept': 'Q181394'}, 'P702', 'Q23324717'], [{'concept': 'Q181394'}, 'P702', 'Q21629494']]}
SELECT DISTINCT ?i WHERE { { { ?i property:P702 resource:Q23324717 } UNION { ?i property:P702 resource:Q21629494 } } . ?i rdf:type ontology:Q181394 }
acyl-CoA thioesterase YbgC    HP0496 cell division protein FtsA    DVU2500
action filter_type
action union
action find_reverse
entity cell division protein FtsA    DVU2500
relation encoded by
action find_reverse
entity acyl-CoA thioesterase YbgC    HP0496
relation encoded by
type nutrient
{'OR': [[{'concept': 'nutrient'}, 'encoded by', 'cell division protein FtsA    DVU2500'], [{'concept': 'nutrient'}, 'encoded by', 'acyl-CoA thioesterase YbgC    HP0496']]}
SELECT DISTINCT ?i WHERE { { { ?i property:encoded_by resource:cell_division_protein_FtsA____DVU2500 } UNION { ?i property:encoded_by resource:acyl-CoA_thioesterase_YbgC____HP0496 } } . ?i rdf:type ontology:nutrient }
[]
nutrient
Q23462625 Q21633074
SYSTEM
cell division protein FtsA    DVU2500, acyl-CoA thioesterase YbgC    HP0496
Q23462625 Q21633074
OR((c(Q181394),P702,Q23324717), (c(Q181394),P702,Q21629494))
action filter_type
action union
action find_reverse
entity Q23324717
relation P702
action find_reverse
entity Q21629494
relation P702
type Q181394
[ANSWERS]
{'OR': [[{'concept': 'Q181394'}, 'P702', 'Q23324717'], [{'concept': 'Q181394'}, 'P702', 'Q21629494']]}
SELECT DISTINCT ?i WHERE { { { ?i property:P702 resource:Q23324717 } UNION { ?i property:P702 resource:Q21629494 } } . ?i rdf:type ontology:Q181394 }
cell division protein FtsA    DVU2500 acyl-CoA thioesterase YbgC    HP0496
Cell division protein FtsA DVU2500 and acyl-CoA thioesterase YbgC HP0496 cell division protein FtsA DVU2500 or acyl-CoA thioesterase YbgC HP0496 encode
cell division protein FtsA    DVU2500 acyl-CoA thioesterase YbgC    HP0496
action filter_type
action union
action find_reverse
entity cell division protein FtsA    DVU2500
relation encoded by
action find_reverse
entity acyl-CoA thioesterase YbgC    HP0496
relation encoded by
type nutrient
{'OR': [[{'concept': 'nutrient'}, 'encoded by', 'cell division protein FtsA    DVU2500'], [{'concept': 'nutrient'}, 'encoded by', 'acyl-CoA thioesterase YbgC    HP0496']]}
SELECT DISTINCT ?i WHERE { { { ?i property:encoded_by resource:cell_division_protein_FtsA____DVU2500 } UNION { ?i property:encoded_by resource:acyl-CoA_thioesterase_YbgC____HP0496 } } . ?i rdf:type ontology:nutrient }
[]
Quantitative Reasoning (All)
Quantitative|Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q181394 Q8386 Q79529
USER
Which nutrients do approximately 56 drugs and chemical substances interact with ?
(c(Q8386)|c(Q79529),P129,c(Q181394))
action approx
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
value 56
[[{'concept': 'Q8386'}, {'concept': 'Q79529'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?u WHERE { { SELECT DISTINCT ?u ( COUNT ( ?e ) AS ?s ) WHERE { { ?e property:P129 ?u . ?e rdf:type ontology:Q8386 . ?u rdf:type ontology:Q181394 } UNION { ?e property:P129 ?u . ?u rdf:type ontology:Q181394 . ?e rdf:type ontology:Q79529 } } GROUP BY ?u } . FILTER ( ?s = 56 ) }
action approx
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
value 56
[[{'concept': 'drug'}, {'concept': 'chemical substance'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?u WHERE { { SELECT DISTINCT ?u ( COUNT ( ?e ) AS ?s ) WHERE { { ?e property:physically_interacts_with ?u . ?e rdf:type ontology:drug . ?u rdf:type ontology:nutrient } UNION { ?e property:physically_interacts_with ?u . ?u rdf:type ontology:nutrient . ?e rdf:type ontology:chemical_substance } } GROUP BY ?u } . FILTER ( ?s = 56 ) }
[]
nutrient drug chemical substance
Q2034004 Q288797 Q21115046
SYSTEM
D(2) dopamine receptor, 5-hydroxytryptamine receptor 1B, 5-hydroxytryptamine receptor 1D
Q309513 Q288797 Q21115046 Q21109363 Q2034004
(c(Q8386)|c(Q79529),P129,c(Q181394))
action approx
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
value 56
[ANSWERS]
[[{'concept': 'Q8386'}, {'concept': 'Q79529'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?u WHERE { { SELECT DISTINCT ?u ( COUNT ( ?e ) AS ?s ) WHERE { { ?e property:P129 ?u . ?e rdf:type ontology:Q8386 . ?u rdf:type ontology:Q181394 } UNION { ?e property:P129 ?u . ?u rdf:type ontology:Q181394 . ?e rdf:type ontology:Q79529 } } GROUP BY ?u } . FILTER ( ?s = 56 ) }
Histamine H1 receptor 5-hydroxytryptamine receptor 1B 5-hydroxytryptamine receptor 1D 5-hydroxytryptamine receptor 6 D(2) dopamine receptor
Which nutrients approximately 56 drugs and chemical substances interact with
D(2) dopamine receptor 5-hydroxytryptamine receptor 1B 5-hydroxytryptamine receptor 1D
action approx
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
value 56
[[{'concept': 'drug'}, {'concept': 'chemical substance'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?u WHERE { { SELECT DISTINCT ?u ( COUNT ( ?e ) AS ?s ) WHERE { { ?e property:physically_interacts_with ?u . ?e rdf:type ontology:drug . ?u rdf:type ontology:nutrient } UNION { ?e property:physically_interacts_with ?u . ?u rdf:type ontology:nutrient . ?e rdf:type ontology:chemical_substance } } GROUP BY ?u } . FILTER ( ?s = 56 ) }
[]
Verification (Boolean) (All)
Verification|one entity, multiple entities (as object) referred indirectly
Q324147
P129
Q8386
USER
Does Terlipressin can communicate with those nutrients ?
(Q324147,P129,Q2034004) (Q324147,P129,Q288797) (Q324147,P129,Q21115046)
action is_in
entity prev_answer
action find
entity Q324147
relation P129
['Q324147', 'P129', 'Q2034004'] ['Q324147', 'P129', 'Q288797'] ['Q324147', 'P129', 'Q21115046']
ASK WHERE { resource:Q324147 property:P129 ?f . VALUES ( ?f ) { ( resource:Q309513 ) ( resource:Q288797 ) ( resource:Q21115046 ) } }
Terlipressin
action is_in
entity prev_answer
action find
entity Terlipressin
relation physically interacts with
['Terlipressin', 'physically interacts with', 'D(2) dopamine receptor'] ['Terlipressin', 'physically interacts with', '5-hydroxytryptamine receptor 1B'] ['Terlipressin', 'physically interacts with', '5-hydroxytryptamine receptor 1D']
ASK WHERE { resource:Terlipressin property:physically_interacts_with ?f . VALUES ( ?f ) { ( resource:Histamine_H1_receptor ) ( resource:5-hydroxytryptamine_receptor_1B ) ( resource:5-hydroxytryptamine_receptor_1D ) } }
[]
drug
SYSTEM
NO
(Q324147,P129,Q2034004) (Q324147,P129,Q288797) (Q324147,P129,Q21115046)
action is_in
entity prev_answer
action find
entity Q324147
relation P129
[ANSWER]
['Q324147', 'P129', 'Q2034004'] ['Q324147', 'P129', 'Q288797'] ['Q324147', 'P129', 'Q21115046']
ASK WHERE { resource:Q324147 property:P129 ?f . VALUES ( ?f ) { ( resource:Q309513 ) ( resource:Q288797 ) ( resource:Q21115046 ) } }
No
action is_in
entity prev_answer
action find
entity Terlipressin
relation physically interacts with
['Terlipressin', 'physically interacts with', 'D(2) dopamine receptor'] ['Terlipressin', 'physically interacts with', '5-hydroxytryptamine receptor 1B'] ['Terlipressin', 'physically interacts with', '5-hydroxytryptamine receptor 1D']
ASK WHERE { resource:Terlipressin property:physically_interacts_with ?f . VALUES ( ?f ) { ( resource:Histamine_H1_receptor ) ( resource:5-hydroxytryptamine_receptor_1B ) ( resource:5-hydroxytryptamine_receptor_1D ) } }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Single entity type
P682
Q1057 Q181394
USER
How many metabolic processes are around 3828 nutrients involved in ?
(c(Q181394),P682,c(Q1057))
action count
action approx
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
value 3828
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ( COUNT ( ?p ) AS ?i ) WHERE { FILTER ( ?j = 3828 ) . { SELECT DISTINCT ?p ( COUNT ( ?e ) AS ?j ) WHERE { ?e property:P682 ?p . ?p rdf:type ontology:Q1057 . ?e rdf:type ontology:Q181394 } GROUP BY ?p } }
action count
action approx
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
value 3828
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ( COUNT ( ?p ) AS ?i ) WHERE { FILTER ( ?j = 3828 ) . { SELECT DISTINCT ?p ( COUNT ( ?e ) AS ?j ) WHERE { ?e property:biological_process ?p . ?p rdf:type ontology:metabolic_process . ?e rdf:type ontology:nutrient } GROUP BY ?p } }
[]
metabolic process nutrient
SYSTEM
2
Q14762260 Q14349667
(c(Q181394),P682,c(Q1057))
action count
action approx
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
value 3828
[ANSWER]
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ( COUNT ( ?p ) AS ?i ) WHERE { FILTER ( ?j = 3828 ) . { SELECT DISTINCT ?p ( COUNT ( ?e ) AS ?j ) WHERE { ?e property:P682 ?p . ?p rdf:type ontology:Q1057 . ?e rdf:type ontology:Q181394 } GROUP BY ?p } }
carbohydrate metabolic process lipid metabolic process
2
action count
action approx
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
value 3828
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ( COUNT ( ?p ) AS ?i ) WHERE { FILTER ( ?j = 3828 ) . { SELECT DISTINCT ?p ( COUNT ( ?e ) AS ?j ) WHERE { ?e property:biological_process ?p . ?p rdf:type ontology:metabolic_process . ?e rdf:type ontology:nutrient } GROUP BY ?p } }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q21132881 Q23462625
P682
Q2996394
USER
Which biological processes are cell division protein FtsA    DVU2500 or Nectin-2 involved in ?
OR((Q23462625,P682,c(Q2996394)), (Q21132881,P682,c(Q2996394)))
action filter_type
action union
action find
entity Q23462625
relation P682
action find
entity Q21132881
relation P682
type Q2996394
{'OR': [['Q23462625', 'P682', {'concept': 'Q2996394'}], ['Q21132881', 'P682', {'concept': 'Q2996394'}]]}
SELECT DISTINCT ?g WHERE { { { resource:Q21132881 property:P682 ?g } UNION { resource:Q23462625 property:P682 ?g } } . ?g rdf:type ontology:Q2996394 }
Nectin-2 cell division protein FtsA    DVU2500
action filter_type
action union
action find
entity cell division protein FtsA    DVU2500
relation biological process
action find
entity Nectin-2
relation biological process
type biological process
{'OR': [['cell division protein FtsA    DVU2500', 'biological process', {'concept': 'biological process'}], ['Nectin-2', 'biological process', {'concept': 'biological process'}]]}
SELECT DISTINCT ?g WHERE { { { resource:Nectin-2 property:biological_process ?g } UNION { resource:cell_division_protein_FtsA____DVU2500 property:biological_process ?g } } . ?g rdf:type ontology:biological_process }
[]
biological process
Q21750263 Q21104990 Q21108839 Q187640
SYSTEM
FtsZ-dependent cytokinesis, spermatid nucleus differentiation, adhesion of symbiont to host, cell adhesion
Q21750263 Q21104990 Q21108839 Q187640
OR((Q23462625,P682,c(Q2996394)), (Q21132881,P682,c(Q2996394)))
action filter_type
action union
action find
entity Q23462625
relation P682
action find
entity Q21132881
relation P682
type Q2996394
[ANSWERS] are cell division protein FtsA DVU2500 or Nectin-2 involved in
{'OR': [['Q23462625', 'P682', {'concept': 'Q2996394'}], ['Q21132881', 'P682', {'concept': 'Q2996394'}]]}
SELECT DISTINCT ?g WHERE { { { resource:Q21132881 property:P682 ?g } UNION { resource:Q23462625 property:P682 ?g } } . ?g rdf:type ontology:Q2996394 }
FtsZ-dependent cytokinesis spermatid nucleus differentiation adhesion of symbiont to host cell adhesion
FtsZ-dependent cytokinesis, spermatid nucleus differentiation, adhesion of symbiont to host and cell adhesion are cell division protein FtsA DVU2500 or Nectin-2 involved in
FtsZ-dependent cytokinesis spermatid nucleus differentiation adhesion of symbiont to host cell adhesion
action filter_type
action union
action find
entity cell division protein FtsA    DVU2500
relation biological process
action find
entity Nectin-2
relation biological process
type biological process
{'OR': [['cell division protein FtsA    DVU2500', 'biological process', {'concept': 'biological process'}], ['Nectin-2', 'biological process', {'concept': 'biological process'}]]}
SELECT DISTINCT ?g WHERE { { { resource:Nectin-2 property:biological_process ?g } UNION { resource:cell_division_protein_FtsA____DVU2500 property:biological_process ?g } } . ?g rdf:type ontology:biological_process }
[]