Simple Question (Direct)
Simple Question
Q27441114
P702
Q863908
USER
Which gene encodes 3-demethylubiquinone-9 3-methyltransferase    Psyr_3650 ?
(Q27441114,P702,c(Q863908))
action filter_type
action find
entity Q27441114
relation P702
type Q863908
['Q27441114', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?i WHERE { resource:Q27441114 property:P702 ?i . ?i rdf:type ontology:Q863908 }
3-demethylubiquinone-9 3-methyltransferase    Psyr_3650
action filter_type
action find
entity 3-demethylubiquinone-9 3-methyltransferase    Psyr_3650
relation encoded by
type nucleic acid sequence
['3-demethylubiquinone-9 3-methyltransferase    Psyr_3650', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?i WHERE { resource:3-demethylubiquinone-9_3-methyltransferase____Psyr_3650 property:encoded_by ?i . ?i rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23145947
SYSTEM
3-demethylubiquinone-9 3-methyltransferase    Psyr_3650
Q23145947
(Q27441114,P702,c(Q863908))
action filter_type
action find
entity Q27441114
relation P702
type Q863908
3-demethylubiquinone-9 3-methyltransferase Psyr 3650 encodes 3-demethylubiquinone-9 3-methyltransferase Psyr_3650
['Q27441114', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?i WHERE { resource:Q27441114 property:P702 ?i . ?i rdf:type ontology:Q863908 }
3-demethylubiquinone-9 3-methyltransferase    Psyr_3650
3-demethylubiquinone-9 3-methyltransferase Psyr 3650 encodes 3-demethylubiquinone-9 3-methyltransferase Psyr_3650
3-demethylubiquinone-9 3-methyltransferase    Psyr_3650
action filter_type
action find
entity 3-demethylubiquinone-9 3-methyltransferase    Psyr_3650
relation encoded by
type nucleic acid sequence
['3-demethylubiquinone-9 3-methyltransferase    Psyr_3650', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?i WHERE { resource:3-demethylubiquinone-9_3-methyltransferase____Psyr_3650 property:encoded_by ?i . ?i rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q27441114
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(c(Q863908),P688,Q23145947)
action filter_type
action find_reverse
entity Q27441114
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q23145947']
SELECT DISTINCT ?c WHERE { ?c property:P688 resource:Q27441114 . ?c rdf:type ontology:Q863908 }
3-demethylubiquinone-9 3-methyltransferase    Psyr_3650
action filter_type
action find_reverse
entity 3-demethylubiquinone-9 3-methyltransferase    Psyr_3650
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', '3-demethylubiquinone-9 3-methyltransferase    Psyr_3650']
SELECT DISTINCT ?c WHERE { ?c property:encodes resource:3-demethylubiquinone-9_3-methyltransferase____Psyr_3650 . ?c rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23145947
SYSTEM
3-demethylubiquinone-9 3-methyltransferase    Psyr_3650
Q23145947
(c(Q863908),P688,Q23145947)
action filter_type
action find_reverse
entity Q27441114
relation P688
type Q863908
3-demethylubiquinone-9 3-methyltransferase Psyr 3650 encodes that nutrient
[{'concept': 'Q863908'}, 'P688', 'Q23145947']
SELECT DISTINCT ?c WHERE { ?c property:P688 resource:Q27441114 . ?c rdf:type ontology:Q863908 }
3-demethylubiquinone-9 3-methyltransferase    Psyr_3650
3-demethylubiquinone-9 3-methyltransferase Psyr 3650 encodes that nutrient
3-demethylubiquinone-9 3-methyltransferase    Psyr_3650
action filter_type
action find_reverse
entity 3-demethylubiquinone-9 3-methyltransferase    Psyr_3650
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', '3-demethylubiquinone-9 3-methyltransferase    Psyr_3650']
SELECT DISTINCT ?c WHERE { ?c property:encodes resource:3-demethylubiquinone-9_3-methyltransferase____Psyr_3650 . ?c rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q27441114
P703
Q631147
USER
Which taxon does 3-demethylubiquinone-9 3-methyltransferase    Psyr_3650 belong to ?
(Q27441114,P703,c(Q631147))
action filter_type
action find
entity Q27441114
relation P703
type Q631147
['Q27441114', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?v WHERE { resource:Q27441114 property:P703 ?v . ?v rdf:type ontology:Q631147 }
3-demethylubiquinone-9 3-methyltransferase    Psyr_3650
action filter_type
action find
entity 3-demethylubiquinone-9 3-methyltransferase    Psyr_3650
relation found in taxon
type infraspecific name
['3-demethylubiquinone-9 3-methyltransferase    Psyr_3650', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?v WHERE { resource:3-demethylubiquinone-9_3-methyltransferase____Psyr_3650 property:found_in_taxon ?v . ?v rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21079490
SYSTEM
Pseudomonas syringae pv. syringae B728a
Q21079490
(Q27441114,P703,c(Q631147))
action filter_type
action find
entity Q27441114
relation P703
type Q631147
[ANSWER] 3-demethylubiquinone-9 3-methyltransferase Psyr_3650 belongs to
['Q27441114', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?v WHERE { resource:Q27441114 property:P703 ?v . ?v rdf:type ontology:Q631147 }
Pseudomonas syringae pv. syringae B728a
Pseudomonas syringae pv. syringae B728a 3-demethylubiquinone-9 3-methyltransferase Psyr_3650 belongs to
Pseudomonas syringae pv. syringae B728a
action filter_type
action find
entity 3-demethylubiquinone-9 3-methyltransferase    Psyr_3650
relation found in taxon
type infraspecific name
['3-demethylubiquinone-9 3-methyltransferase    Psyr_3650', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?v WHERE { resource:3-demethylubiquinone-9_3-methyltransferase____Psyr_3650 property:found_in_taxon ?v . ?v rdf:type ontology:infraspecific_name }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q23557837
Q631147
USER
And what about enterochelin esterase    STM0586?
(Q23557837,P703,c(Q631147))
action filter_type
action find
entity Q23557837
relation P703
type Q631147
['Q23557837', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?t WHERE { resource:Q23557837 property:P703 ?t . ?t rdf:type ontology:Q631147 }
enterochelin esterase    STM0586
action filter_type
action find
entity enterochelin esterase    STM0586
relation found in taxon
type infraspecific name
['enterochelin esterase    STM0586', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?t WHERE { resource:enterochelin_esterase____STM0586 property:found_in_taxon ?t . ?t rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102996
SYSTEM
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Q21102996
(Q23557837,P703,c(Q631147))
action filter_type
action find
entity Q23557837
relation P703
type Q631147
[ANSWER]
['Q23557837', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?t WHERE { resource:Q23557837 property:P703 ?t . ?t rdf:type ontology:Q631147 }
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
action filter_type
action find
entity enterochelin esterase    STM0586
relation found in taxon
type infraspecific name
['enterochelin esterase    STM0586', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?t WHERE { resource:enterochelin_esterase____STM0586 property:found_in_taxon ?t . ?t rdf:type ontology:infraspecific_name }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Mult. entity type|Indirect
P703
Q631147 Q863908 Q181394
USER
How many infraspecific names are the taxon to which lesser number of nucleic acid sequences or nutrients belongs to than that infraspecific name ?
(c(Q863908)|c(Q181394),P703,c(Q631147))
action count
action less
action union
action find_reverse_tuple_counts
relation P703
type Q631147
type Q863908
action find_reverse_tuple_counts
relation P703
type Q631147
type Q181394
action count
action filter_multi_types
action find_reverse
entity Q21102996
relation P703
type Q863908
type Q181394
[[{'concept': 'Q863908'}, {'concept': 'Q181394'}], 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ( COUNT ( ?t ) AS ?o ) WHERE { { SELECT DISTINCT ?t ( COUNT ( ?w ) AS ?b ) WHERE { VALUES ( ?h ) { ( ontology:Q181394 ) ( ontology:Q863908 ) } . ?w rdf:type ?h } GROUP BY ?t } . { SELECT DISTINCT ( COUNT ( ?l ) AS ?d ) WHERE { ?l property:P703 resource:Q21102996 . { { ?l rdf:type ontology:Q863908 } UNION { ?l rdf:type ontology:Q181394 } } } } . FILTER ( ?b < ?d ) }
action count
action less
action union
action find_reverse_tuple_counts
relation found in taxon
type infraspecific name
type nucleic acid sequence
action find_reverse_tuple_counts
relation found in taxon
type infraspecific name
type nutrient
action count
action filter_multi_types
action find_reverse
entity Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
relation found in taxon
type nucleic acid sequence
type nutrient
[[{'concept': 'nucleic acid sequence'}, {'concept': 'nutrient'}], 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ( COUNT ( ?t ) AS ?o ) WHERE { { SELECT DISTINCT ?t ( COUNT ( ?w ) AS ?b ) WHERE { VALUES ( ?h ) { ( ontology:nutrient ) ( ontology:nucleic_acid_sequence ) } . ?w rdf:type ?h } GROUP BY ?t } . { SELECT DISTINCT ( COUNT ( ?l ) AS ?d ) WHERE { ?l property:found_in_taxon resource:Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 . { { ?l rdf:type ontology:nucleic_acid_sequence } UNION { ?l rdf:type ontology:nutrient } } } } . FILTER ( ?b < ?d ) }
[]
infraspecific name nucleic acid sequence nutrient
SYSTEM
57
Q21102990 Q21102991 Q21102992 Q21102994 Q21102999 Q21102960 Q21065229 Q21102919 Q21102943 Q21102942 Q21102941 Q21102940 Q21102946 Q21102920 Q21102965 Q21102964 Q21102949 Q21102966 Q21102961 Q21102963 Q21102962 Q21102921 Q21102987 Q21102922 Q21102925 Q21102974 Q21102989 Q21079491 Q21102985 Q21102984 Q21102983 Q21102982 Q21102981 Q21102980 Q21102973 Q21102969 Q21102944 Q21102968 Q21102954 Q21102955 Q21102956 Q21102957 Q21102951 Q21102978 Q21102953 Q21102976 Q21102977 Q21102975 Q21102959 Q21102971 Q21064863 Q21064832 Q21102948 Q21102979 Q21079559 Q21102938 Q21102967
(c(Q863908)|c(Q181394),P703,c(Q631147))
action count
action less
action union
action find_reverse_tuple_counts
relation P703
type Q631147
type Q863908
action find_reverse_tuple_counts
relation P703
type Q631147
type Q181394
action count
action filter_multi_types
action find_reverse
entity Q21102996
relation P703
type Q863908
type Q181394
[ANSWER]
[[{'concept': 'Q863908'}, {'concept': 'Q181394'}], 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ( COUNT ( ?t ) AS ?o ) WHERE { { SELECT DISTINCT ?t ( COUNT ( ?w ) AS ?b ) WHERE { VALUES ( ?h ) { ( ontology:Q181394 ) ( ontology:Q863908 ) } . ?w rdf:type ?h } GROUP BY ?t } . { SELECT DISTINCT ( COUNT ( ?l ) AS ?d ) WHERE { ?l property:P703 resource:Q21102996 . { { ?l rdf:type ontology:Q863908 } UNION { ?l rdf:type ontology:Q181394 } } } } . FILTER ( ?b < ?d ) }
Mycoplasma pneumoniae M129 Thermotoga maritima MSB8 Gardnerella vaginalis ATCC 14019 Streptococcus mitis B6 Geobacter sulfurreducens PCA Streptococcus suis BM407 Leptospira interrogans serovar Lai str. 56601 Legionella pneumophila subsp. pneumophila str. Philadelphia 1 Yersinia pestis CO92 Yersinia enterocolitica subsp. enterocolitica 8081 Shigella flexneri 2a str. 301 Shigella dysenteriae Sd197 Vibrio fischeri ES114 Acinetobacter pittii PHEA-2 Enterococcus faecalis V583 Streptococcus pyogenes M1 GAS Rickettsia prowazekii str. Madrid E Enterococcus faecium DO Streptococcus mutans UA159 Streptococcus pneumoniae R6 Streptococcus agalactiae 2603V/R Neisseria gonorrhoeae FA 1090 Mycobacterium tuberculosis H37Rv Neisseria meningitidis MC58 Bordetella pertussis Tohama I Clostridium botulinum A str. Hall Mycoplasma mycoides subsp. mycoides SC str. PG1 Xanthomonas campestris pv. campestris str. ATCC 33913 Mycobacterium leprae TN Mycobacterium bovis AF2122/97 Corynebacterium glutamicum ATCC 13032 Bifidobacterium bifidum PRL2010 Listeria monocytogenes EGD-e Lactobacillus salivarius UCC118 Clostridium acetobutylicum ATCC 824 Bacillus anthracis str. Sterne Aeromonas hydrophila subsp. hydrophila ATCC 7966 Bacillus anthracis str. Ames Rhodospirillum rubrum ATCC 11170 Chloroflexus aurantiacus J-10-fl Staphylococcus aureus subsp. aureus NCTC 8325 Staphylococcus epidermidis ATCC 12228 Fusobacterium nucleatum subsp. nucleatum ATCC 25586 Lactobacillus casei ATCC 334 Rhodobacter sphaeroides 2.4.1 Peptoclostridium difficile 630 Lactobacillus acidophilus NCFM Clostridium botulinum A str. ATCC 3502 Deinococcus radiodurans R1 Bacillus subtilis subsp. subtilis str. 168 Bordetella parapertussis Bpp5 Coxiella burnetii RSA 493 Haemophilus influenzae Rd KW20 Lactobacillus plantarum WCFS1 Salinibacter ruber DSM 13855 Escherichia coli str. K-12 substr. MG1655 Lactococcus lactis subsp. lactis Il1403
57
action count
action less
action union
action find_reverse_tuple_counts
relation found in taxon
type infraspecific name
type nucleic acid sequence
action find_reverse_tuple_counts
relation found in taxon
type infraspecific name
type nutrient
action count
action filter_multi_types
action find_reverse
entity Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
relation found in taxon
type nucleic acid sequence
type nutrient
[[{'concept': 'nucleic acid sequence'}, {'concept': 'nutrient'}], 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ( COUNT ( ?t ) AS ?o ) WHERE { { SELECT DISTINCT ?t ( COUNT ( ?w ) AS ?b ) WHERE { VALUES ( ?h ) { ( ontology:nutrient ) ( ontology:nucleic_acid_sequence ) } . ?w rdf:type ?h } GROUP BY ?t } . { SELECT DISTINCT ( COUNT ( ?l ) AS ?d ) WHERE { ?l property:found_in_taxon resource:Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 . { { ?l rdf:type ontology:nucleic_acid_sequence } UNION { ?l rdf:type ontology:nutrient } } } } . FILTER ( ?b < ?d ) }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q27441114
P682
Q2996394
USER
Which biological process is 3-demethylubiquinone-9 3-methyltransferase    Psyr_3650 involved in ?
(Q27441114,P682,c(Q2996394))
action filter_type
action find
entity Q27441114
relation P682
type Q2996394
['Q27441114', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?r WHERE { resource:Q27441114 property:P682 ?r . ?r rdf:type ontology:Q2996394 }
3-demethylubiquinone-9 3-methyltransferase    Psyr_3650
action filter_type
action find
entity 3-demethylubiquinone-9 3-methyltransferase    Psyr_3650
relation biological process
type biological process
['3-demethylubiquinone-9 3-methyltransferase    Psyr_3650', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?r WHERE { resource:3-demethylubiquinone-9_3-methyltransferase____Psyr_3650 property:biological_process ?r . ?r rdf:type ontology:biological_process }
[]
biological process
Q518328
SYSTEM
methylation
Q518328
(Q27441114,P682,c(Q2996394))
action filter_type
action find
entity Q27441114
relation P682
type Q2996394
[ANSWER] is 3-demethylubiquinone-9 3-methyltransferase Psyr_3650 involved in
['Q27441114', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?r WHERE { resource:Q27441114 property:P682 ?r . ?r rdf:type ontology:Q2996394 }
methylation
Methylation is 3-demethylubiquinone-9 3-methyltransferase Psyr_3650 involved in
methylation
action filter_type
action find
entity 3-demethylubiquinone-9 3-methyltransferase    Psyr_3650
relation biological process
type biological process
['3-demethylubiquinone-9 3-methyltransferase    Psyr_3650', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?r WHERE { resource:3-demethylubiquinone-9_3-methyltransferase____Psyr_3650 property:biological_process ?r . ?r rdf:type ontology:biological_process }
[]