Simple Question (Direct)
Simple Question
Q24124385
P681
Q5058355
USER
Which cellular components are components of protein translocase subunit SecY    BP3636 ?
(Q24124385,P681,c(Q5058355))
action filter_type
action find
entity Q24124385
relation P681
type Q5058355
['Q24124385', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?l WHERE { resource:Q24124385 property:P681 ?l . ?l rdf:type ontology:Q5058355 }
protein translocase subunit SecY    BP3636
action filter_type
action find
entity protein translocase subunit SecY    BP3636
relation cell component
type cellular component
['protein translocase subunit SecY    BP3636', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?l WHERE { resource:protein_translocase_subunit_SecY____BP3636 property:cell_component ?l . ?l rdf:type ontology:cellular_component }
[]
cellular component
Q29548 Q3824358
SYSTEM
plasma membrane, intracellular
Q29548 Q3824358
(Q24124385,P681,c(Q5058355))
action filter_type
action find
entity Q24124385
relation P681
type Q5058355
The [ANSWERS] are components of protein translocase subunit SecY BP3636
['Q24124385', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?l WHERE { resource:Q24124385 property:P681 ?l . ?l rdf:type ontology:Q5058355 }
plasma membrane intracellular
The plasma membrane and intracellular are components of protein translocase subunit SecY BP3636
plasma membrane intracellular
action filter_type
action find
entity protein translocase subunit SecY    BP3636
relation cell component
type cellular component
['protein translocase subunit SecY    BP3636', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?l WHERE { resource:protein_translocase_subunit_SecY____BP3636 property:cell_component ?l . ?l rdf:type ontology:cellular_component }
[]
Clarification
Simple Question|Single Entity|Indirect
Q3824358
P361
Q5058355
USER
What is a part of that one ?
(c(Q5058355),P361,Q3824358)
action filter_type
action find_reverse
entity Q3824358
relation P361
type Q5058355
[{'concept': 'Q5058355'}, 'P361', 'Q3824358']
SELECT DISTINCT ?p WHERE { ?p property:P361 resource:Q3824358 . ?p rdf:type ontology:Q5058355 }
intracellular
action filter_type
action find_reverse
entity intracellular
relation part of
type cellular component
[{'concept': 'cellular component'}, 'part of', 'intracellular']
SELECT DISTINCT ?p WHERE { ?p property:part_of resource:intracellular . ?p rdf:type ontology:cellular_component }
[]
cellular component
Clarification for simple ques.
Q3824358
SYSTEM
Did you mean intracellular ?
Q29548 Q3824358
(c(Q5058355),P361,Q29548) (c(Q5058355),P361,Q3824358)
[ANSWER]
[{'concept': 'Q5058355'}, 'P361', 'Q29548'] [{'concept': 'Q5058355'}, 'P361', 'Q3824358']
SELECT DISTINCT ?p WHERE { ?p property:P361 resource:Q3824358 . ?p rdf:type ontology:Q5058355 }
plasma membrane intracellular
Did you mean intracellular ?
intracellular
[{'concept': 'cellular component'}, 'part of', 'plasma membrane'] [{'concept': 'cellular component'}, 'part of', 'intracellular']
SELECT DISTINCT ?p WHERE { ?p property:part_of resource:intracellular . ?p rdf:type ontology:cellular_component }
[]
Simple Question (Coreferenced)
USER
Yes
(c(Q5058355),P361,Q3824358)
[{'concept': 'Q5058355'}, 'P361', 'Q3824358']
[{'concept': 'cellular component'}, 'part of', 'intracellular']
[]
Q14901717
SYSTEM
intracellular part
Q14901717
(c(Q5058355),P361,Q3824358)
action filter_type
action find_reverse
entity Q3824358
relation P361
type Q5058355
A part of that one is an [ANSWER]
[{'concept': 'Q5058355'}, 'P361', 'Q3824358']
SELECT DISTINCT ?p WHERE { ?p property:P361 resource:Q3824358 . ?p rdf:type ontology:Q5058355 }
intracellular part
A part of that one is an intracellular part
intracellular part
action filter_type
action find_reverse
entity intracellular
relation part of
type cellular component
[{'concept': 'cellular component'}, 'part of', 'intracellular']
SELECT DISTINCT ?p WHERE { ?p property:part_of resource:intracellular . ?p rdf:type ontology:cellular_component }
[]
Verification (Boolean) (All)
Verification|3 entities, 2 direct, 2(direct) are query entities, subject is indirect
Q14901717 Q22327083 Q3824358
P361
Q5058355
USER
Is that cellular component a part of PTEN phosphatase complex and intracellular ?
(Q14901717,P361,Q22327083) (Q14901717,P361,Q3824358)
action is_in
entity Q14901717
action intersection
action find_reverse
entity Q22327083
relation P361
action find_reverse
entity Q3824358
relation P361
['Q14901717', 'P361', 'Q22327083'] ['Q14901717', 'P361', 'Q3824358']
ASK WHERE { resource:Q14901717 property:P361 resource:Q22327083 . resource:Q14901717 property:P361 resource:Q3824358 }
intracellular part PTEN phosphatase complex intracellular
action is_in
entity intracellular part
action intersection
action find_reverse
entity PTEN phosphatase complex
relation part of
action find_reverse
entity intracellular
relation part of
['intracellular part', 'part of', 'PTEN phosphatase complex'] ['intracellular part', 'part of', 'intracellular']
ASK WHERE { resource:intracellular_part property:part_of resource:PTEN_phosphatase_complex . resource:intracellular_part property:part_of resource:intracellular }
[]
cellular component
SYSTEM
NO and YES respectively
(Q14901717,P361,Q22327083) (Q14901717,P361,Q3824358)
action is_in
entity Q14901717
action intersection
action find_reverse
entity Q22327083
relation P361
action find_reverse
entity Q3824358
relation P361
[ANSWER]
['Q14901717', 'P361', 'Q22327083'] ['Q14901717', 'P361', 'Q3824358']
ASK WHERE { resource:Q14901717 property:P361 resource:Q22327083 . resource:Q14901717 property:P361 resource:Q3824358 }
NO and YES respectively
action is_in
entity intracellular part
action intersection
action find_reverse
entity PTEN phosphatase complex
relation part of
action find_reverse
entity intracellular
relation part of
['intracellular part', 'part of', 'PTEN phosphatase complex'] ['intracellular part', 'part of', 'intracellular']
ASK WHERE { resource:intracellular_part property:part_of resource:PTEN_phosphatase_complex . resource:intracellular_part property:part_of resource:intracellular }
[]
Verification (Boolean) (All)
Verification|3 entities, all direct, 2 are query entities
Q24124385 Q6993882 Q21102925
P703
Q631147
USER
Is protein translocase subunit SecY    BP3636 found in Neoregelia 'Lavender Mist' and Bordetella pertussis Tohama I ?
(Q24124385,P703,Q6993882) (Q24124385,P703,Q21102925)
action is_in
entity Q24124385
action intersection
action find_reverse
entity Q6993882
relation P703
action find_reverse
entity Q21102925
relation P703
['Q24124385', 'P703', 'Q6993882'] ['Q24124385', 'P703', 'Q21102925']
ASK WHERE { resource:Q24124385 property:P703 resource:Q6993882 . resource:Q24124385 property:P703 resource:Q21102925 }
protein translocase subunit SecY    BP3636 Neoregelia 'Lavender Mist' Bordetella pertussis Tohama I
action is_in
entity protein translocase subunit SecY    BP3636
action intersection
action find_reverse
entity Neoregelia 'Lavender Mist'
relation found in taxon
action find_reverse
entity Bordetella pertussis Tohama I
relation found in taxon
['protein translocase subunit SecY    BP3636', 'found in taxon', "Neoregelia 'Lavender Mist'"] ['protein translocase subunit SecY    BP3636', 'found in taxon', 'Bordetella pertussis Tohama I']
ASK WHERE { resource:protein_translocase_subunit_SecY____BP3636 property:found_in_taxon resource:Neoregelia_'Lavender_Mist' . resource:protein_translocase_subunit_SecY____BP3636 property:found_in_taxon resource:Bordetella_pertussis_Tohama_I }
[]
infraspecific name
SYSTEM
NO and YES respectively
(Q24124385,P703,Q6993882) (Q24124385,P703,Q21102925)
action is_in
entity Q24124385
action intersection
action find_reverse
entity Q6993882
relation P703
action find_reverse
entity Q21102925
relation P703
[ANSWER]
['Q24124385', 'P703', 'Q6993882'] ['Q24124385', 'P703', 'Q21102925']
ASK WHERE { resource:Q24124385 property:P703 resource:Q6993882 . resource:Q24124385 property:P703 resource:Q21102925 }
NO and YES respectively
action is_in
entity protein translocase subunit SecY    BP3636
action intersection
action find_reverse
entity Neoregelia 'Lavender Mist'
relation found in taxon
action find_reverse
entity Bordetella pertussis Tohama I
relation found in taxon
['protein translocase subunit SecY    BP3636', 'found in taxon', "Neoregelia 'Lavender Mist'"] ['protein translocase subunit SecY    BP3636', 'found in taxon', 'Bordetella pertussis Tohama I']
ASK WHERE { resource:protein_translocase_subunit_SecY____BP3636 property:found_in_taxon resource:Neoregelia_'Lavender_Mist' . resource:protein_translocase_subunit_SecY____BP3636 property:found_in_taxon resource:Bordetella_pertussis_Tohama_I }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Single entity type
Q21109092
P361
Q5058355 Q5058355
USER
How many cellular components are around the same number of cellular components a part of as nuclear outer membrane-endoplasmic reticulum membrane network ?
(c(Q5058355),P361,c(Q5058355))
action count
action approx
action find_reverse_tuple_counts
relation P361
type Q5058355
type Q5058355
action count
action filter_type
action find
entity Q21109092
relation P361
type Q5058355
[{'concept': 'Q5058355'}, 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ( COUNT ( ?j ) AS ?y ) WHERE { { SELECT DISTINCT ( COUNT ( ?m ) AS ?x ) WHERE { resource:Q21109092 property:P361 ?m . ?m rdf:type ontology:Q5058355 } } . FILTER ( ?v = ?x ) . { SELECT DISTINCT ?j ( COUNT ( ?i ) AS ?v ) WHERE { ?j rdf:type ontology:Q5058355 . ?i rdf:type ontology:Q5058355 . ?i property:P361 ?j } GROUP BY ?j } }
nuclear outer membrane-endoplasmic reticulum membrane network
action count
action approx
action find_reverse_tuple_counts
relation part of
type cellular component
type cellular component
action count
action filter_type
action find
entity nuclear outer membrane-endoplasmic reticulum membrane network
relation part of
type cellular component
[{'concept': 'cellular component'}, 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ( COUNT ( ?j ) AS ?y ) WHERE { { SELECT DISTINCT ( COUNT ( ?m ) AS ?x ) WHERE { resource:nuclear_outer_membrane-endoplasmic_reticulum_membrane_network property:part_of ?m . ?m rdf:type ontology:cellular_component } } . FILTER ( ?v = ?x ) . { SELECT DISTINCT ?j ( COUNT ( ?i ) AS ?v ) WHERE { ?j rdf:type ontology:cellular_component . ?i rdf:type ontology:cellular_component . ?i property:part_of ?j } GROUP BY ?j } }
[]
cellular component cellular component
SYSTEM
16
Q21106124 Q14878067 Q22327994 Q22327479 Q671136 Q22329021 Q14864390 Q14329032 Q21199358 Q21109092 Q14864382 Q14863372 Q22329162 Q22327475 Q29548 Q899827
(c(Q5058355),P361,c(Q5058355))
action count
action approx
action find_reverse_tuple_counts
relation P361
type Q5058355
type Q5058355
action count
action filter_type
action find
entity Q21109092
relation P361
type Q5058355
[ANSWER]
[{'concept': 'Q5058355'}, 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ( COUNT ( ?j ) AS ?y ) WHERE { { SELECT DISTINCT ( COUNT ( ?m ) AS ?x ) WHERE { resource:Q21109092 property:P361 ?m . ?m rdf:type ontology:Q5058355 } } . FILTER ( ?v = ?x ) . { SELECT DISTINCT ?j ( COUNT ( ?i ) AS ?v ) WHERE { ?j rdf:type ontology:Q5058355 . ?i rdf:type ontology:Q5058355 . ?i property:P361 ?j } GROUP BY ?j } }
viral capsid organelle membrane rhoptry presynapse synaptic vesicle apical complex synaptic vesicle membrane endoplasmic reticulum membrane bacterial nucleoid nuclear outer membrane-endoplasmic reticulum membrane network presynaptic active zone myelin sheath ventral disc postsynapse plasma membrane endomembrane system
16
action count
action approx
action find_reverse_tuple_counts
relation part of
type cellular component
type cellular component
action count
action filter_type
action find
entity nuclear outer membrane-endoplasmic reticulum membrane network
relation part of
type cellular component
[{'concept': 'cellular component'}, 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ( COUNT ( ?j ) AS ?y ) WHERE { { SELECT DISTINCT ( COUNT ( ?m ) AS ?x ) WHERE { resource:nuclear_outer_membrane-endoplasmic_reticulum_membrane_network property:part_of ?m . ?m rdf:type ontology:cellular_component } } . FILTER ( ?v = ?x ) . { SELECT DISTINCT ?j ( COUNT ( ?i ) AS ?v ) WHERE { ?j rdf:type ontology:cellular_component . ?i rdf:type ontology:cellular_component . ?i property:part_of ?j } GROUP BY ?j } }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Single entity type|Incomplete
Q22329846
P361
Q5058355 Q5058355
USER
And what about icosahedral viral capsid, neck?
(c(Q5058355),P361,c(Q5058355))
action count
action approx
action find_reverse_tuple_counts
relation P361
type Q5058355
type Q5058355
action count
action filter_type
action find
entity Q22329846
relation P361
type Q5058355
[{'concept': 'Q5058355'}, 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ( COUNT ( ?j ) AS ?f ) WHERE { { SELECT DISTINCT ( COUNT ( ?m ) AS ?a ) WHERE { ?m rdf:type ontology:Q5058355 . resource:Q22329846 property:P361 ?m } } . FILTER ( ?t = ?a ) . { SELECT DISTINCT ?j ( COUNT ( ?x ) AS ?t ) WHERE { ?x property:P361 ?j . ?j rdf:type ontology:Q5058355 . ?x rdf:type ontology:Q5058355 } GROUP BY ?j } }
icosahedral viral capsid, neck
action count
action approx
action find_reverse_tuple_counts
relation part of
type cellular component
type cellular component
action count
action filter_type
action find
entity icosahedral viral capsid, neck
relation part of
type cellular component
[{'concept': 'cellular component'}, 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ( COUNT ( ?j ) AS ?f ) WHERE { { SELECT DISTINCT ( COUNT ( ?m ) AS ?a ) WHERE { ?m rdf:type ontology:cellular_component . resource:icosahedral_viral_capsid,_neck property:part_of ?m } } . FILTER ( ?t = ?a ) . { SELECT DISTINCT ?j ( COUNT ( ?x ) AS ?t ) WHERE { ?x property:part_of ?j . ?j rdf:type ontology:cellular_component . ?x rdf:type ontology:cellular_component } GROUP BY ?j } }
[]
cellular component cellular component
SYSTEM
83
Q22329450 Q15320191 Q14912978 Q14864171 Q14876131 Q14878067 Q1604780 Q22327994 Q22327622 Q14860843 Q22327686 Q22327683 Q22330482 Q671136 Q22326188 Q22330431 Q189094 Q24576572 Q3824358 Q22329021 Q14864391 Q14864390 Q22328085 Q21095183 Q14905221 Q21199358 Q22327411 Q22327418 Q22329159 Q22329397 Q14864382 Q14353100 Q22327884 Q21423046 Q47263 Q22327652 Q22329848 Q180436 Q22329846 Q22329160 Q24570682 Q22330051 Q22327498 Q14911512 Q14819352 Q22327494 Q22327889 Q14762605 Q14864266 Q21750262 Q21198990 Q776995 Q22329401 Q24570673 Q14349538 Q22328884 Q22329076 Q22330231 Q5419646 Q21126899 Q22325459 Q22327714 Q22327805 Q21107481 Q22327505 Q21102478 Q22327502 Q22327500 Q138639 Q22329104 Q21095308 Q14864857 Q1065756 Q79927 Q180951 Q14864520 Q29548 Q22328105 Q14860546 Q14860540 Q14864866 Q6414172 Q193825
(c(Q5058355),P361,c(Q5058355))
action count
action approx
action find_reverse_tuple_counts
relation P361
type Q5058355
type Q5058355
action count
action filter_type
action find
entity Q22329846
relation P361
type Q5058355
[ANSWER]
[{'concept': 'Q5058355'}, 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ( COUNT ( ?j ) AS ?f ) WHERE { { SELECT DISTINCT ( COUNT ( ?m ) AS ?a ) WHERE { ?m rdf:type ontology:Q5058355 . resource:Q22329846 property:P361 ?m } } . FILTER ( ?t = ?a ) . { SELECT DISTINCT ?j ( COUNT ( ?x ) AS ?t ) WHERE { ?x property:P361 ?j . ?j rdf:type ontology:Q5058355 . ?x rdf:type ontology:Q5058355 } GROUP BY ?j } }
lateral part of cell synaptic cleft mitochondrial nucleoid cell periphery compact myelin organelle membrane hemidesmosome rhoptry side of membrane nuclear outer membrane prospore membrane eisosome ventral disc supernumerary microtubule array synaptic vesicle aster unencapsulated part of cell cell surface presynaptic endosome membrane intracellular apical complex intracellular organelle synaptic vesicle membrane external encapsulating structure dendritic spine head symbiont-containing vacuole membrane bacterial nucleoid extracellular space of host host ventral disc microtubule array cluster of actin-based cell projections presynaptic active zone cell projection cellular bud membrane-bounded organelle chloroplast whole membrane icosahedral viral capsid, collar cilium icosahedral viral capsid, neck ventral disc overlap zone spine apparatus membrane dinoflagellate hypocone postsynaptic endocytic zone stereocilium respiratory chain postsynaptic endosome cell trailing edge midbody cell-substrate junction cell division site periplasmic space neuromuscular junction pellicle postsynaptic endosome membrane apical part of cell organellar ribosome plastid nucleoid dinoflagellate epicone excitatory synapse cell tip sperm individualization complex coated membrane photosynthetic membrane site of polarized growth presynaptic endosome other organism cell presynaptic active zone cytoplasmic component presynaptic endocytic zone peroxisome germ tube retromer complex cell leading edge melanosome endoplasmic reticulum chromatin extrinsic component of membrane plasma membrane cell septum basal part of cell clathrin-coated pit cell body kinocilium extracellular matrix
83
action count
action approx
action find_reverse_tuple_counts
relation part of
type cellular component
type cellular component
action count
action filter_type
action find
entity icosahedral viral capsid, neck
relation part of
type cellular component
[{'concept': 'cellular component'}, 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ( COUNT ( ?j ) AS ?f ) WHERE { { SELECT DISTINCT ( COUNT ( ?m ) AS ?a ) WHERE { ?m rdf:type ontology:cellular_component . resource:icosahedral_viral_capsid,_neck property:part_of ?m } } . FILTER ( ?t = ?a ) . { SELECT DISTINCT ?j ( COUNT ( ?x ) AS ?t ) WHERE { ?x property:part_of ?j . ?j rdf:type ontology:cellular_component . ?x rdf:type ontology:cellular_component } GROUP BY ?j } }
[]