Simple Question (Direct)
Simple Question
Q21108129
P702
Q863908
USER
Which nucleic acid sequence encodes Translocon-associated protein subunit alpha ?
(Q21108129,P702,c(Q863908))
action filter_type
action find
entity Q21108129
relation P702
type Q863908
['Q21108129', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?q WHERE { resource:Q21108129 property:P702 ?q . ?q rdf:type ontology:Q863908 }
Translocon-associated protein subunit alpha
action filter_type
action find
entity Translocon-associated protein subunit alpha
relation encoded by
type nucleic acid sequence
['Translocon-associated protein subunit alpha', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?q WHERE { resource:Translocon-associated_protein_subunit_alpha property:encoded_by ?q . ?q rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18031725
SYSTEM
SSR1
Q18031725
(Q21108129,P702,c(Q863908))
action filter_type
action find
entity Q21108129
relation P702
type Q863908
[ANSWER] encodes Translocon-associated protein subunit alpha
['Q21108129', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?q WHERE { resource:Q21108129 property:P702 ?q . ?q rdf:type ontology:Q863908 }
SSR1
SSR1 encodes Translocon-associated protein subunit alpha
SSR1
action filter_type
action find
entity Translocon-associated protein subunit alpha
relation encoded by
type nucleic acid sequence
['Translocon-associated protein subunit alpha', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?q WHERE { resource:Translocon-associated_protein_subunit_alpha property:encoded_by ?q . ?q rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18031725
P684
Q863908
USER
Which nucleic acid sequence has that one as its orthologous gene ?
(c(Q863908),P684,Q18031725)
action filter_type
action find
entity Q18031725
relation P684
type Q863908
[{'concept': 'Q863908'}, 'P684', 'Q18031725']
SELECT DISTINCT ?y WHERE { resource:Q18031725 property:P684 ?y . ?y rdf:type ontology:Q863908 }
SSR1
action filter_type
action find
entity SSR1
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'SSR1']
SELECT DISTINCT ?y WHERE { resource:SSR1 property:ortholog ?y . ?y rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18272619
SYSTEM
Ssr1
Q18272619
(c(Q863908),P684,Q18031725)
action filter_type
action find
entity Q18031725
relation P684
type Q863908
[ANSWER] has that one as its orthologous gene
[{'concept': 'Q863908'}, 'P684', 'Q18031725']
SELECT DISTINCT ?y WHERE { resource:Q18031725 property:P684 ?y . ?y rdf:type ontology:Q863908 }
Ssr1
Ssr1 has that one as its orthologous gene
Ssr1
action filter_type
action find
entity SSR1
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'SSR1']
SELECT DISTINCT ?y WHERE { resource:SSR1 property:ortholog ?y . ?y rdf:type ontology:nucleic_acid_sequence }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type
Q18031725
P688
Q181394
USER
How many nutrients are encoded by SSR1 ?
(Q18031725,P688,c(Q181394))
action count
action filter_type
action find
entity Q18031725
relation P688
type Q181394
['Q18031725', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?g ) AS ?m ) WHERE { resource:Q18031725 property:P688 ?g . ?g rdf:type ontology:Q181394 }
SSR1
action count
action filter_type
action find
entity SSR1
relation encodes
type nutrient
['SSR1', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?g ) AS ?m ) WHERE { resource:SSR1 property:encodes ?g . ?g rdf:type ontology:nutrient }
[]
nutrient
SYSTEM
1
Q21108129
(Q18031725,P688,c(Q181394))
action count
action filter_type
action find
entity Q18031725
relation P688
type Q181394
[ANSWER]
['Q18031725', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?g ) AS ?m ) WHERE { resource:Q18031725 property:P688 ?g . ?g rdf:type ontology:Q181394 }
Translocon-associated protein subunit alpha
1
action count
action filter_type
action find
entity SSR1
relation encodes
type nutrient
['SSR1', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?g ) AS ?m ) WHERE { resource:SSR1 property:encodes ?g . ?g rdf:type ontology:nutrient }
[]
Quantitative Reasoning (Count) (All)
Incomplete count-based ques
Q23076660
Q181394
USER
And how about putative fimbrial chaperone protein    EAE_08595?
(Q23076660,P688,c(Q181394))
action count
action filter_type
action find
entity Q23076660
relation P688
type Q181394
['Q23076660', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?g ) AS ?a ) WHERE { resource:Q23076660 property:P688 ?g . ?g rdf:type ontology:Q181394 }
putative fimbrial chaperone protein    EAE_08595
action count
action filter_type
action find
entity putative fimbrial chaperone protein    EAE_08595
relation encodes
type nutrient
['putative fimbrial chaperone protein    EAE_08595', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?g ) AS ?a ) WHERE { resource:putative_fimbrial_chaperone_protein____EAE_08595 property:encodes ?g . ?g rdf:type ontology:nutrient }
[]
nutrient
SYSTEM
1
(Q23076660,P688,c(Q181394))
action count
action filter_type
action find
entity Q23076660
relation P688
type Q181394
[ANSWER]
['Q23076660', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?g ) AS ?a ) WHERE { resource:Q23076660 property:P688 ?g . ?g rdf:type ontology:Q181394 }
1
action count
action filter_type
action find
entity putative fimbrial chaperone protein    EAE_08595
relation encodes
type nutrient
['putative fimbrial chaperone protein    EAE_08595', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?g ) AS ?a ) WHERE { resource:putative_fimbrial_chaperone_protein____EAE_08595 property:encodes ?g . ?g rdf:type ontology:nutrient }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q18272619
P703
Q16521
USER
Where is Ssr1 found ?
(Q18272619,P703,c(Q16521))
action filter_type
action find
entity Q18272619
relation P703
type Q16521
['Q18272619', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?f WHERE { resource:Q18272619 property:P703 ?f . ?f rdf:type ontology:Q16521 }
Ssr1
action filter_type
action find
entity Ssr1
relation found in taxon
type taxon
['Ssr1', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?f WHERE { resource:Ssr1 property:found_in_taxon ?f . ?f rdf:type ontology:taxon }
[]
taxon
Q83310
SYSTEM
Mus musculus
Q83310
(Q18272619,P703,c(Q16521))
action filter_type
action find
entity Q18272619
relation P703
type Q16521
Ssr1 is found in [ANSWER]
['Q18272619', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?f WHERE { resource:Q18272619 property:P703 ?f . ?f rdf:type ontology:Q16521 }
Mus musculus
Ssr1 is found in Mus musculus
Mus musculus
action filter_type
action find
entity Ssr1
relation found in taxon
type taxon
['Ssr1', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?f WHERE { resource:Ssr1 property:found_in_taxon ?f . ?f rdf:type ontology:taxon }
[]
Logical Reasoning (All)
Logical|Intersection|Single_Relation
Q23074768 Q23076660
P703
Q631147
USER
Which infraspecific names are putative fimbrial chaperone protein    EAE_08595 and FKBP-type peptidyl-prolyl cis-trans isomerase    EAE_05020 a part of ?
AND((Q23076660,P703,c(Q631147)), (Q23074768,P703,c(Q631147)))
action filter_type
action intersection
action find
entity Q23076660
relation P703
action find
entity Q23074768
relation P703
type Q631147
{'AND': [['Q23076660', 'P703', {'concept': 'Q631147'}], ['Q23074768', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?u WHERE { resource:Q23076660 property:P703 ?u . resource:Q23074768 property:P703 ?u . ?u rdf:type ontology:Q631147 }
FKBP-type peptidyl-prolyl cis-trans isomerase    EAE_05020 putative fimbrial chaperone protein    EAE_08595
action filter_type
action intersection
action find
entity putative fimbrial chaperone protein    EAE_08595
relation found in taxon
action find
entity FKBP-type peptidyl-prolyl cis-trans isomerase    EAE_05020
relation found in taxon
type infraspecific name
{'AND': [['putative fimbrial chaperone protein    EAE_08595', 'found in taxon', {'concept': 'infraspecific name'}], ['FKBP-type peptidyl-prolyl cis-trans isomerase    EAE_05020', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?u WHERE { resource:putative_fimbrial_chaperone_protein____EAE_08595 property:found_in_taxon ?u . resource:FKBP-type_peptidyl-prolyl_cis-trans_isomerase____EAE_05020 property:found_in_taxon ?u . ?u rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102927
SYSTEM
Enterobacter aerogenes KCTC 2190
Q21102927
AND((Q23076660,P703,c(Q631147)), (Q23074768,P703,c(Q631147)))
action filter_type
action intersection
action find
entity Q23076660
relation P703
action find
entity Q23074768
relation P703
type Q631147
S [ANSWER] is putative fimbrial chaperone protein EAE_08595 and FKBP-type peptidyl-prolyl cis-trans isomerase EAE_05020 a part of
{'AND': [['Q23076660', 'P703', {'concept': 'Q631147'}], ['Q23074768', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?u WHERE { resource:Q23076660 property:P703 ?u . resource:Q23074768 property:P703 ?u . ?u rdf:type ontology:Q631147 }
Enterobacter aerogenes KCTC 2190
S Enterobacter aerogenes KCTC 2190 is putative fimbrial chaperone protein EAE_08595 and FKBP-type peptidyl-prolyl cis-trans isomerase EAE_05020 a part of
Enterobacter aerogenes KCTC 2190
action filter_type
action intersection
action find
entity putative fimbrial chaperone protein    EAE_08595
relation found in taxon
action find
entity FKBP-type peptidyl-prolyl cis-trans isomerase    EAE_05020
relation found in taxon
type infraspecific name
{'AND': [['putative fimbrial chaperone protein    EAE_08595', 'found in taxon', {'concept': 'infraspecific name'}], ['FKBP-type peptidyl-prolyl cis-trans isomerase    EAE_05020', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?u WHERE { resource:putative_fimbrial_chaperone_protein____EAE_08595 property:found_in_taxon ?u . resource:FKBP-type_peptidyl-prolyl_cis-trans_isomerase____EAE_05020 property:found_in_taxon ?u . ?u rdf:type ontology:infraspecific_name }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q24124305 Q23076660
P703
Q631147
USER
Which infraspecific names are the taxon to which putative fimbrial chaperone protein    EAE_08595 or chaperone protein HtpG    BP0074 belongs to ?
OR((Q23076660,P703,c(Q631147)), (Q24124305,P703,c(Q631147)))
action filter_type
action union
action find
entity Q23076660
relation P703
action find
entity Q24124305
relation P703
type Q631147
{'OR': [['Q23076660', 'P703', {'concept': 'Q631147'}], ['Q24124305', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?s WHERE { { { resource:Q23076660 property:P703 ?s } UNION { resource:Q24124305 property:P703 ?s } } . ?s rdf:type ontology:Q631147 }
chaperone protein HtpG    BP0074 putative fimbrial chaperone protein    EAE_08595
action filter_type
action union
action find
entity putative fimbrial chaperone protein    EAE_08595
relation found in taxon
action find
entity chaperone protein HtpG    BP0074
relation found in taxon
type infraspecific name
{'OR': [['putative fimbrial chaperone protein    EAE_08595', 'found in taxon', {'concept': 'infraspecific name'}], ['chaperone protein HtpG    BP0074', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?s WHERE { { { resource:putative_fimbrial_chaperone_protein____EAE_08595 property:found_in_taxon ?s } UNION { resource:chaperone_protein_HtpG____BP0074 property:found_in_taxon ?s } } . ?s rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102925 Q21102927
SYSTEM
Bordetella pertussis Tohama I, Enterobacter aerogenes KCTC 2190
Q21102925 Q21102927
OR((Q23076660,P703,c(Q631147)), (Q24124305,P703,c(Q631147)))
action filter_type
action union
action find
entity Q23076660
relation P703
action find
entity Q24124305
relation P703
type Q631147
[ANSWERS] are the taxon to which putative fimbrial chaperone protein EAE_08595 or chaperone protein HtpG BP0074 belongs to
{'OR': [['Q23076660', 'P703', {'concept': 'Q631147'}], ['Q24124305', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?s WHERE { { { resource:Q23076660 property:P703 ?s } UNION { resource:Q24124305 property:P703 ?s } } . ?s rdf:type ontology:Q631147 }
Bordetella pertussis Tohama I Enterobacter aerogenes KCTC 2190
Bordetella pertussis Tohama I and Enterobacter aerogenes KCTC 2190 are the taxon to which putative fimbrial chaperone protein EAE_08595 or chaperone protein HtpG BP0074 belongs to
Bordetella pertussis Tohama I Enterobacter aerogenes KCTC 2190
action filter_type
action union
action find
entity putative fimbrial chaperone protein    EAE_08595
relation found in taxon
action find
entity chaperone protein HtpG    BP0074
relation found in taxon
type infraspecific name
{'OR': [['putative fimbrial chaperone protein    EAE_08595', 'found in taxon', {'concept': 'infraspecific name'}], ['chaperone protein HtpG    BP0074', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?s WHERE { { { resource:putative_fimbrial_chaperone_protein____EAE_08595 property:found_in_taxon ?s } UNION { resource:chaperone_protein_HtpG____BP0074 property:found_in_taxon ?s } } . ?s rdf:type ontology:infraspecific_name }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q24099225 Q23076660
P703
Q631147
USER
Which infraspecific names are putative fimbrial chaperone protein    EAE_08595 or periplasmic putrescine-binding protein; permease    XCC2344 found ?
OR((Q23076660,P703,c(Q631147)), (Q24099225,P703,c(Q631147)))
action filter_type
action union
action find
entity Q23076660
relation P703
action find
entity Q24099225
relation P703
type Q631147
{'OR': [['Q23076660', 'P703', {'concept': 'Q631147'}], ['Q24099225', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:Q631147 . { { resource:Q24099225 property:P703 ?m } UNION { resource:Q23076660 property:P703 ?m } } }
periplasmic putrescine-binding protein; permease    XCC2344 putative fimbrial chaperone protein    EAE_08595
action filter_type
action union
action find
entity putative fimbrial chaperone protein    EAE_08595
relation found in taxon
action find
entity periplasmic putrescine-binding protein; permease    XCC2344
relation found in taxon
type infraspecific name
{'OR': [['putative fimbrial chaperone protein    EAE_08595', 'found in taxon', {'concept': 'infraspecific name'}], ['periplasmic putrescine-binding protein; permease    XCC2344', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:infraspecific_name . { { resource:periplasmic_putrescine-binding_protein;_permease____XCC2344 property:found_in_taxon ?m } UNION { resource:putative_fimbrial_chaperone_protein____EAE_08595 property:found_in_taxon ?m } } }
[]
infraspecific name
Q21079491 Q21102927
SYSTEM
Xanthomonas campestris pv. campestris str. ATCC 33913, Enterobacter aerogenes KCTC 2190
Q21079491 Q21102927
OR((Q23076660,P703,c(Q631147)), (Q24099225,P703,c(Q631147)))
action filter_type
action union
action find
entity Q23076660
relation P703
action find
entity Q24099225
relation P703
type Q631147
[ANSWERS] are putative fimbrial chaperone protein EAE_08595 or periplasmic putrescine-binding protein; permease XCC2344 found
{'OR': [['Q23076660', 'P703', {'concept': 'Q631147'}], ['Q24099225', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:Q631147 . { { resource:Q24099225 property:P703 ?m } UNION { resource:Q23076660 property:P703 ?m } } }
Xanthomonas campestris pv. campestris str. ATCC 33913 Enterobacter aerogenes KCTC 2190
Xanthomonas campestris pv. campestris str. ATCC 33913 and Enterobacter aerogenes KCTC 2190 are putative fimbrial chaperone protein EAE_08595 or periplasmic putrescine-binding protein; permease XCC2344 found
Xanthomonas campestris pv. campestris str. ATCC 33913 Enterobacter aerogenes KCTC 2190
action filter_type
action union
action find
entity putative fimbrial chaperone protein    EAE_08595
relation found in taxon
action find
entity periplasmic putrescine-binding protein; permease    XCC2344
relation found in taxon
type infraspecific name
{'OR': [['putative fimbrial chaperone protein    EAE_08595', 'found in taxon', {'concept': 'infraspecific name'}], ['periplasmic putrescine-binding protein; permease    XCC2344', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:infraspecific_name . { { resource:periplasmic_putrescine-binding_protein;_permease____XCC2344 property:found_in_taxon ?m } UNION { resource:putative_fimbrial_chaperone_protein____EAE_08595 property:found_in_taxon ?m } } }
[]