Simple Question (Direct)
Simple Question
Q21759695
P681
Q45948
USER
Which organelle is a component of cation-transporting P-type ATPase    PA1549 ?
(Q21759695,P681,c(Q45948))
action filter_type
action find
entity Q21759695
relation P681
type Q45948
['Q21759695', 'P681', {'concept': 'Q45948'}]
SELECT DISTINCT ?a WHERE { resource:Q21759695 property:P681 ?a . ?a rdf:type ontology:Q45948 }
cation-transporting P-type ATPase    PA1549
action filter_type
action find
entity cation-transporting P-type ATPase    PA1549
relation cell component
type organelle
['cation-transporting P-type ATPase    PA1549', 'cell component', {'concept': 'organelle'}]
SELECT DISTINCT ?a WHERE { resource:cation-transporting_P-type_ATPase____PA1549 property:cell_component ?a . ?a rdf:type ontology:organelle }
[]
organelle
Q14349519
SYSTEM
intracellular membrane-bounded organelle
Q14349519
(Q21759695,P681,c(Q45948))
action filter_type
action find
entity Q21759695
relation P681
type Q45948
[ANSWER] is a component of cation-transporting P-type ATPase PA1549
['Q21759695', 'P681', {'concept': 'Q45948'}]
SELECT DISTINCT ?a WHERE { resource:Q21759695 property:P681 ?a . ?a rdf:type ontology:Q45948 }
intracellular membrane-bounded organelle
Intracellular membrane-bounded organelle is a component of cation-transporting P-type ATPase PA1549
intracellular membrane-bounded organelle
action filter_type
action find
entity cation-transporting P-type ATPase    PA1549
relation cell component
type organelle
['cation-transporting P-type ATPase    PA1549', 'cell component', {'concept': 'organelle'}]
SELECT DISTINCT ?a WHERE { resource:cation-transporting_P-type_ATPase____PA1549 property:cell_component ?a . ?a rdf:type ontology:organelle }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21759695
P688
Q863908
USER
Which nucleic acid sequence encodes cation-transporting P-type ATPase    PA1549 ?
(c(Q863908),P688,Q21759695)
action filter_type
action find_reverse
entity Q21759695
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q21759695']
SELECT DISTINCT ?u WHERE { ?u property:P688 resource:Q21759695 . ?u rdf:type ontology:Q863908 }
cation-transporting P-type ATPase    PA1549
action filter_type
action find_reverse
entity cation-transporting P-type ATPase    PA1549
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'cation-transporting P-type ATPase    PA1549']
SELECT DISTINCT ?u WHERE { ?u property:encodes resource:cation-transporting_P-type_ATPase____PA1549 . ?u rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q21690344
SYSTEM
cation-transporting P-type ATPase    PA1549
Q21690344
(c(Q863908),P688,Q21759695)
action filter_type
action find_reverse
entity Q21759695
relation P688
type Q863908
Cation-transporting P-type ATPase PA1549 encodes cation-transporting P-type ATPase PA1549
[{'concept': 'Q863908'}, 'P688', 'Q21759695']
SELECT DISTINCT ?u WHERE { ?u property:P688 resource:Q21759695 . ?u rdf:type ontology:Q863908 }
cation-transporting P-type ATPase    PA1549
Cation-transporting P-type ATPase PA1549 encodes cation-transporting P-type ATPase PA1549
cation-transporting P-type ATPase    PA1549
action filter_type
action find_reverse
entity cation-transporting P-type ATPase    PA1549
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'cation-transporting P-type ATPase    PA1549']
SELECT DISTINCT ?u WHERE { ?u property:encodes resource:cation-transporting_P-type_ATPase____PA1549 . ?u rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21690344
P702
Q181394
USER
What is encoded by that nucleic acid sequence ?
(c(Q181394),P702,Q21690344)
action filter_type
action find_reverse
entity Q21690344
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q21690344']
SELECT DISTINCT ?t WHERE { ?t property:P702 resource:Q21690344 . ?t rdf:type ontology:Q181394 }
cation-transporting P-type ATPase    PA1549
action filter_type
action find_reverse
entity cation-transporting P-type ATPase    PA1549
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'cation-transporting P-type ATPase    PA1549']
SELECT DISTINCT ?t WHERE { ?t property:encoded_by resource:cation-transporting_P-type_ATPase____PA1549 . ?t rdf:type ontology:nutrient }
[]
nutrient
Q21759695
SYSTEM
cation-transporting P-type ATPase    PA1549
Q21759695
(c(Q181394),P702,Q21690344)
action filter_type
action find_reverse
entity Q21690344
relation P702
type Q181394
The cation-transporting P-type ATPase PA1549 is encoded by that nucleic acid sequence
[{'concept': 'Q181394'}, 'P702', 'Q21690344']
SELECT DISTINCT ?t WHERE { ?t property:P702 resource:Q21690344 . ?t rdf:type ontology:Q181394 }
cation-transporting P-type ATPase    PA1549
The cation-transporting P-type ATPase PA1549 is encoded by that nucleic acid sequence
cation-transporting P-type ATPase    PA1549
action filter_type
action find_reverse
entity cation-transporting P-type ATPase    PA1549
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'cation-transporting P-type ATPase    PA1549']
SELECT DISTINCT ?t WHERE { ?t property:encoded_by resource:cation-transporting_P-type_ATPase____PA1549 . ?t rdf:type ontology:nutrient }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21759695
P703
Q16521
USER
Where is that nutrient found ?
(Q21759695,P703,c(Q16521))
action filter_type
action find
entity Q21759695
relation P703
type Q16521
['Q21759695', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?d WHERE { ?d rdf:type ontology:Q16521 . resource:Q21759695 property:P703 ?d }
cation-transporting P-type ATPase    PA1549
action filter_type
action find
entity cation-transporting P-type ATPase    PA1549
relation found in taxon
type taxon
['cation-transporting P-type ATPase    PA1549', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?d WHERE { ?d rdf:type ontology:taxon . resource:cation-transporting_P-type_ATPase____PA1549 property:found_in_taxon ?d }
[]
taxon
Q21065234
SYSTEM
Pseudomonas aeruginosa PAO1
Q21065234
(Q21759695,P703,c(Q16521))
action filter_type
action find
entity Q21759695
relation P703
type Q16521
That nutrient is found in [ANSWER]
['Q21759695', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?d WHERE { ?d rdf:type ontology:Q16521 . resource:Q21759695 property:P703 ?d }
Pseudomonas aeruginosa PAO1
That nutrient is found in Pseudomonas aeruginosa PAO1
Pseudomonas aeruginosa PAO1
action filter_type
action find
entity cation-transporting P-type ATPase    PA1549
relation found in taxon
type taxon
['cation-transporting P-type ATPase    PA1549', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?d WHERE { ?d rdf:type ontology:taxon . resource:cation-transporting_P-type_ATPase____PA1549 property:found_in_taxon ?d }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21759695
P680
Q44424
USER
What represents the molecular function of cation-transporting P-type ATPase    PA1549 ?
(Q21759695,P680,c(Q44424))
action filter_type
action find
entity Q21759695
relation P680
type Q44424
['Q21759695', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?q WHERE { resource:Q21759695 property:P680 ?q . ?q rdf:type ontology:Q44424 }
cation-transporting P-type ATPase    PA1549
action filter_type
action find
entity cation-transporting P-type ATPase    PA1549
relation molecular function
type chemical bond
['cation-transporting P-type ATPase    PA1549', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?q WHERE { resource:cation-transporting_P-type_ATPase____PA1549 property:molecular_function ?q . ?q rdf:type ontology:chemical_bond }
[]
chemical bond
Q13667380
SYSTEM
metal ion binding
Q13667380
(Q21759695,P680,c(Q44424))
action filter_type
action find
entity Q21759695
relation P680
type Q44424
The [ANSWER] represents the molecular function of cation-transporting P-type ATPase PA1549
['Q21759695', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?q WHERE { resource:Q21759695 property:P680 ?q . ?q rdf:type ontology:Q44424 }
metal ion binding
The metal ion binding represents the molecular function of cation-transporting P-type ATPase PA1549
metal ion binding
action filter_type
action find
entity cation-transporting P-type ATPase    PA1549
relation molecular function
type chemical bond
['cation-transporting P-type ATPase    PA1549', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?q WHERE { resource:cation-transporting_P-type_ATPase____PA1549 property:molecular_function ?q . ?q rdf:type ontology:chemical_bond }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q27739960
Q44424
USER
And what about heat shock protein HtpX    ML2278?
(Q27739960,P680,c(Q44424))
action filter_type
action find
entity Q27739960
relation P680
type Q44424
['Q27739960', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?p WHERE { resource:Q27739960 property:P680 ?p . ?p rdf:type ontology:Q44424 }
heat shock protein HtpX    ML2278
action filter_type
action find
entity heat shock protein HtpX    ML2278
relation molecular function
type chemical bond
['heat shock protein HtpX    ML2278', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?p WHERE { resource:heat_shock_protein_HtpX____ML2278 property:molecular_function ?p . ?p rdf:type ontology:chemical_bond }
[]
chemical bond
Q14633865 Q13667380
SYSTEM
zinc ion binding, metal ion binding
Q14633865 Q13667380
(Q27739960,P680,c(Q44424))
action filter_type
action find
entity Q27739960
relation P680
type Q44424
[ANSWERS]
['Q27739960', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?p WHERE { resource:Q27739960 property:P680 ?p . ?p rdf:type ontology:Q44424 }
zinc ion binding metal ion binding
zinc ion binding metal ion binding
action filter_type
action find
entity heat shock protein HtpX    ML2278
relation molecular function
type chemical bond
['heat shock protein HtpX    ML2278', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?p WHERE { resource:heat_shock_protein_HtpX____ML2278 property:molecular_function ?p . ?p rdf:type ontology:chemical_bond }
[]
Verification (Boolean) (All)
Verification|one entity, multiple entities (as object) referred indirectly
Q22315238
P680
Q181394
USER
Do hypothetical protein    PP_1864 have those chemical bonds as their molecular function ?
(Q22315238,P680,Q14633865) (Q22315238,P680,Q13667380)
action is_in
entity prev_answer
action find
entity Q22315238
relation P680
['Q22315238', 'P680', 'Q14633865'] ['Q22315238', 'P680', 'Q13667380']
ASK WHERE { VALUES ( ?w ) { ( resource:Q14633865 ) ( resource:Q13667380 ) } . resource:Q22315238 property:P680 ?w }
hypothetical protein    PP_1864
action is_in
entity prev_answer
action find
entity hypothetical protein    PP_1864
relation molecular function
['hypothetical protein    PP_1864', 'molecular function', 'zinc ion binding'] ['hypothetical protein    PP_1864', 'molecular function', 'metal ion binding']
ASK WHERE { VALUES ( ?w ) { ( resource:zinc_ion_binding ) ( resource:metal_ion_binding ) } . resource:hypothetical_protein____PP_1864 property:molecular_function ?w }
[]
nutrient
SYSTEM
NO
(Q22315238,P680,Q14633865) (Q22315238,P680,Q13667380)
action is_in
entity prev_answer
action find
entity Q22315238
relation P680
[ANSWER]
['Q22315238', 'P680', 'Q14633865'] ['Q22315238', 'P680', 'Q13667380']
ASK WHERE { VALUES ( ?w ) { ( resource:Q14633865 ) ( resource:Q13667380 ) } . resource:Q22315238 property:P680 ?w }
No
action is_in
entity prev_answer
action find
entity hypothetical protein    PP_1864
relation molecular function
['hypothetical protein    PP_1864', 'molecular function', 'zinc ion binding'] ['hypothetical protein    PP_1864', 'molecular function', 'metal ion binding']
ASK WHERE { VALUES ( ?w ) { ( resource:zinc_ion_binding ) ( resource:metal_ion_binding ) } . resource:hypothetical_protein____PP_1864 property:molecular_function ?w }
[]