Simple Question (Direct)
Simple Question
Q24254053
P703
Q631147
USER
Which infraspecific name is septation ring formation regulator EzrA    lmo1594 found in ?
(Q24254053,P703,c(Q631147))
action filter_type
action find
entity Q24254053
relation P703
type Q631147
['Q24254053', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?y WHERE { resource:Q24254053 property:P703 ?y . ?y rdf:type ontology:Q631147 }
septation ring formation regulator EzrA    lmo1594
action filter_type
action find
entity septation ring formation regulator EzrA    lmo1594
relation found in taxon
type infraspecific name
['septation ring formation regulator EzrA    lmo1594', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?y WHERE { resource:septation_ring_formation_regulator_EzrA____lmo1594 property:found_in_taxon ?y . ?y rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102981
SYSTEM
Listeria monocytogenes EGD-e
Q21102981
(Q24254053,P703,c(Q631147))
action filter_type
action find
entity Q24254053
relation P703
type Q631147
[ANSWER] is septation ring formation regulator EzrA lmo1594 found in
['Q24254053', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?y WHERE { resource:Q24254053 property:P703 ?y . ?y rdf:type ontology:Q631147 }
Listeria monocytogenes EGD-e
Listeria monocytogenes EGD-e is septation ring formation regulator EzrA lmo1594 found in
Listeria monocytogenes EGD-e
action filter_type
action find
entity septation ring formation regulator EzrA    lmo1594
relation found in taxon
type infraspecific name
['septation ring formation regulator EzrA    lmo1594', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?y WHERE { resource:septation_ring_formation_regulator_EzrA____lmo1594 property:found_in_taxon ?y . ?y rdf:type ontology:infraspecific_name }
[]
Comparative Reasoning (All)
Comparative|More/Less|Single entity type
Q14909347
P682
Q1057 Q181394
USER
Which metabolic processes are less number of nutrients involved in than flavonoid metabolic process ?
(c(Q181394),P682,c(Q1057))
action less
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
action count
action filter_type
action find_reverse
entity Q14909347
relation P682
type Q181394
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?t WHERE { { SELECT DISTINCT ?t ( COUNT ( ?a ) AS ?i ) WHERE { ?a property:P682 ?t . ?t rdf:type ontology:Q1057 . ?a rdf:type ontology:Q181394 } GROUP BY ?t } . { SELECT DISTINCT ( COUNT ( ?f ) AS ?e ) WHERE { ?f rdf:type ontology:Q181394 . ?f property:P682 resource:Q14909347 } } . FILTER ( ?i < ?e ) }
flavonoid metabolic process
action less
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
action count
action filter_type
action find_reverse
entity flavonoid metabolic process
relation biological process
type nutrient
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?t WHERE { { SELECT DISTINCT ?t ( COUNT ( ?a ) AS ?i ) WHERE { ?a property:biological_process ?t . ?t rdf:type ontology:metabolic_process . ?a rdf:type ontology:nutrient } GROUP BY ?t } . { SELECT DISTINCT ( COUNT ( ?f ) AS ?e ) WHERE { ?f rdf:type ontology:nutrient . ?f property:biological_process resource:flavonoid_metabolic_process } } . FILTER ( ?i < ?e ) }
[]
metabolic process nutrient
Q22251129 Q21116483 Q14907178
SYSTEM
proteolysis in other organism, lymphotoxin A biosynthetic process, interleukin-2 biosynthetic process
Q14907628 Q14913194 Q22274727 Q22251129 Q21134382 Q21133617 Q21157940 Q21116483 Q21114210 Q14907178 Q21121151 Q22275051 Q14913439 Q21111970 Q898365 Q22279483 Q21119973 Q14865941 Q22282595 Q14907180 Q14907181 Q14905125 Q14902250 Q21124879 Q14863986 Q21116485 Q14914233 Q21119193 Q22274791 Q22279533 Q21112195 Q21759328 Q14912265
(c(Q181394),P682,c(Q1057))
action less
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
action count
action filter_type
action find_reverse
entity Q14909347
relation P682
type Q181394
[ANSWERS] are less number of nutrients involved in than flavonoid metabolic process
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?t WHERE { { SELECT DISTINCT ?t ( COUNT ( ?a ) AS ?i ) WHERE { ?a property:P682 ?t . ?t rdf:type ontology:Q1057 . ?a rdf:type ontology:Q181394 } GROUP BY ?t } . { SELECT DISTINCT ( COUNT ( ?f ) AS ?e ) WHERE { ?f rdf:type ontology:Q181394 . ?f property:P682 resource:Q14909347 } } . FILTER ( ?i < ?e ) }
multicellular organism metabolic process cellular ketone body metabolic process secondary metabolic process proteolysis in other organism cofactor metabolic process actin modification nitrobenzene metabolic process lymphotoxin A biosynthetic process regulation of translational initiation by eIF2 alpha dephosphorylation interleukin-2 biosynthetic process reactive nitrogen species metabolic process halogenated hydrocarbon metabolic process organophosphate metabolic process reactive oxygen species biosynthetic process glycosylation cellular macromolecule metabolic process oxygen metabolic process connective tissue growth factor biosynthetic process ketone body metabolic process interleukin-13 biosynthetic process granulocyte macrophage colony-stimulating factor biosynthetic process neurotransmitter metabolic process telomere maintenance via semi-conservative replication interleukin-8 biosynthetic process hormone catabolic process interleukin-6 biosynthetic process phosphatidic acid metabolic process cellular modified amino acid metabolic process organic cyclic compound metabolic process transposon integration patched ligand maturation cellular catabolic process cellular ketone metabolic process
Proteolysis in other organism, lymphotoxin A biosynthetic process and interleukin-2 biosynthetic process are less number of nutrients involved in than flavonoid metabolic process
proteolysis in other organism lymphotoxin A biosynthetic process interleukin-2 biosynthetic process
action less
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
action count
action filter_type
action find_reverse
entity flavonoid metabolic process
relation biological process
type nutrient
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?t WHERE { { SELECT DISTINCT ?t ( COUNT ( ?a ) AS ?i ) WHERE { ?a property:biological_process ?t . ?t rdf:type ontology:metabolic_process . ?a rdf:type ontology:nutrient } GROUP BY ?t } . { SELECT DISTINCT ( COUNT ( ?f ) AS ?e ) WHERE { ?f rdf:type ontology:nutrient . ?f property:biological_process resource:flavonoid_metabolic_process } } . FILTER ( ?i < ?e ) }
[]
Comparative Reasoning (All)
Comparative|More/Less|Single entity type|Incomplete
Q21759328
P682
Q1057 Q181394
USER
And how about cellular catabolic process?
(c(Q181394),P682,c(Q1057))
action less
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
action count
action filter_type
action find_reverse
entity Q21759328
relation P682
type Q181394
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?g WHERE { { SELECT DISTINCT ?g ( COUNT ( ?i ) AS ?y ) WHERE { ?i rdf:type ontology:Q181394 . ?g rdf:type ontology:Q1057 . ?i property:P682 ?g } GROUP BY ?g } . { SELECT DISTINCT ( COUNT ( ?n ) AS ?u ) WHERE { ?n rdf:type ontology:Q181394 . ?n property:P682 resource:Q21759328 } } . FILTER ( ?y < ?u ) }
cellular catabolic process
action less
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
action count
action filter_type
action find_reverse
entity cellular catabolic process
relation biological process
type nutrient
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?g WHERE { { SELECT DISTINCT ?g ( COUNT ( ?i ) AS ?y ) WHERE { ?i rdf:type ontology:nutrient . ?g rdf:type ontology:metabolic_process . ?i property:biological_process ?g } GROUP BY ?g } . { SELECT DISTINCT ( COUNT ( ?n ) AS ?u ) WHERE { ?n rdf:type ontology:nutrient . ?n property:biological_process resource:cellular_catabolic_process } } . FILTER ( ?y < ?u ) }
[]
metabolic process nutrient
Q14865941 Q14907180 Q14907181
SYSTEM
connective tissue growth factor biosynthetic process, interleukin-13 biosynthetic process, granulocyte macrophage colony-stimulating factor biosynthetic process
Q21134382 Q21133617 Q21121151 Q22275051 Q14913439 Q21111970 Q14865941 Q22282595 Q14907180 Q14907181 Q14902250 Q21124879 Q14914233 Q21119193 Q22274791 Q21112195
(c(Q181394),P682,c(Q1057))
action less
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
action count
action filter_type
action find_reverse
entity Q21759328
relation P682
type Q181394
[ANSWERS]
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?g WHERE { { SELECT DISTINCT ?g ( COUNT ( ?i ) AS ?y ) WHERE { ?i rdf:type ontology:Q181394 . ?g rdf:type ontology:Q1057 . ?i property:P682 ?g } GROUP BY ?g } . { SELECT DISTINCT ( COUNT ( ?n ) AS ?u ) WHERE { ?n rdf:type ontology:Q181394 . ?n property:P682 resource:Q21759328 } } . FILTER ( ?y < ?u ) }
cofactor metabolic process actin modification reactive nitrogen species metabolic process halogenated hydrocarbon metabolic process organophosphate metabolic process reactive oxygen species biosynthetic process connective tissue growth factor biosynthetic process ketone body metabolic process interleukin-13 biosynthetic process granulocyte macrophage colony-stimulating factor biosynthetic process telomere maintenance via semi-conservative replication interleukin-8 biosynthetic process phosphatidic acid metabolic process cellular modified amino acid metabolic process organic cyclic compound metabolic process patched ligand maturation
connective tissue growth factor biosynthetic process interleukin-13 biosynthetic process granulocyte macrophage colony-stimulating factor biosynthetic process
action less
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
action count
action filter_type
action find_reverse
entity cellular catabolic process
relation biological process
type nutrient
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?g WHERE { { SELECT DISTINCT ?g ( COUNT ( ?i ) AS ?y ) WHERE { ?i rdf:type ontology:nutrient . ?g rdf:type ontology:metabolic_process . ?i property:biological_process ?g } GROUP BY ?g } . { SELECT DISTINCT ( COUNT ( ?n ) AS ?u ) WHERE { ?n rdf:type ontology:nutrient . ?n property:biological_process resource:cellular_catabolic_process } } . FILTER ( ?y < ?u ) }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q24254053
P688
Q863908
USER
Which nucleic acid sequence encodes septation ring formation regulator EzrA    lmo1594 ?
(c(Q863908),P688,Q24254053)
action filter_type
action find_reverse
entity Q24254053
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q24254053']
SELECT DISTINCT ?y WHERE { ?y property:P688 resource:Q24254053 . ?y rdf:type ontology:Q863908 }
septation ring formation regulator EzrA    lmo1594
action filter_type
action find_reverse
entity septation ring formation regulator EzrA    lmo1594
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'septation ring formation regulator EzrA    lmo1594']
SELECT DISTINCT ?y WHERE { ?y property:encodes resource:septation_ring_formation_regulator_EzrA____lmo1594 . ?y rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23239248
SYSTEM
septation ring formation regulator EzrA    lmo1594
Q23239248
(c(Q863908),P688,Q24254053)
action filter_type
action find_reverse
entity Q24254053
relation P688
type Q863908
Septation ring formation regulator EzrA lmo1594 encodes septation ring formation regulator EzrA lmo1594
[{'concept': 'Q863908'}, 'P688', 'Q24254053']
SELECT DISTINCT ?y WHERE { ?y property:P688 resource:Q24254053 . ?y rdf:type ontology:Q863908 }
septation ring formation regulator EzrA    lmo1594
Septation ring formation regulator EzrA lmo1594 encodes septation ring formation regulator EzrA lmo1594
septation ring formation regulator EzrA    lmo1594
action filter_type
action find_reverse
entity septation ring formation regulator EzrA    lmo1594
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'septation ring formation regulator EzrA    lmo1594']
SELECT DISTINCT ?y WHERE { ?y property:encodes resource:septation_ring_formation_regulator_EzrA____lmo1594 . ?y rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23239248
P702
Q181394
USER
Which nutrient does that nucleic acid sequence encode ?
(c(Q181394),P702,Q23239248)
action filter_type
action find_reverse
entity Q23239248
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q23239248']
SELECT DISTINCT ?k WHERE { ?k property:P702 resource:Q23239248 . ?k rdf:type ontology:Q181394 }
septation ring formation regulator EzrA    lmo1594
action filter_type
action find_reverse
entity septation ring formation regulator EzrA    lmo1594
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'septation ring formation regulator EzrA    lmo1594']
SELECT DISTINCT ?k WHERE { ?k property:encoded_by resource:septation_ring_formation_regulator_EzrA____lmo1594 . ?k rdf:type ontology:nutrient }
[]
nutrient
Q24254053
SYSTEM
septation ring formation regulator EzrA    lmo1594
Q24254053
(c(Q181394),P702,Q23239248)
action filter_type
action find_reverse
entity Q23239248
relation P702
type Q181394
That nucleic acid sequence encodes a septation ring formation regulator EzrA lmo1594
[{'concept': 'Q181394'}, 'P702', 'Q23239248']
SELECT DISTINCT ?k WHERE { ?k property:P702 resource:Q23239248 . ?k rdf:type ontology:Q181394 }
septation ring formation regulator EzrA    lmo1594
That nucleic acid sequence encodes a septation ring formation regulator EzrA lmo1594
septation ring formation regulator EzrA    lmo1594
action filter_type
action find_reverse
entity septation ring formation regulator EzrA    lmo1594
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'septation ring formation regulator EzrA    lmo1594']
SELECT DISTINCT ?k WHERE { ?k property:encoded_by resource:septation_ring_formation_regulator_EzrA____lmo1594 . ?k rdf:type ontology:nutrient }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, subject is indirect
Q24254053 Q23239248
P702
Q863908
USER
Does septation ring formation regulator EzrA    lmo1594 encode that nutrient ?
(Q24254053,P702,Q23239248)
action is_in
entity Q23239248
action find
entity Q24254053
relation P702
['Q24254053', 'P702', 'Q23239248']
ASK WHERE { resource:Q24254053 property:P702 resource:Q23239248 }
septation ring formation regulator EzrA    lmo1594 septation ring formation regulator EzrA    lmo1594
action is_in
entity septation ring formation regulator EzrA    lmo1594
action find
entity septation ring formation regulator EzrA    lmo1594
relation encoded by
['septation ring formation regulator EzrA    lmo1594', 'encoded by', 'septation ring formation regulator EzrA    lmo1594']
ASK WHERE { resource:septation_ring_formation_regulator_EzrA____lmo1594 property:encoded_by resource:septation_ring_formation_regulator_EzrA____lmo1594 }
[]
nucleic acid sequence
SYSTEM
YES
(Q24254053,P702,Q23239248)
action is_in
entity Q23239248
action find
entity Q24254053
relation P702
[ANSWER]
['Q24254053', 'P702', 'Q23239248']
ASK WHERE { resource:Q24254053 property:P702 resource:Q23239248 }
Yes
action is_in
entity septation ring formation regulator EzrA    lmo1594
action find
entity septation ring formation regulator EzrA    lmo1594
relation encoded by
['septation ring formation regulator EzrA    lmo1594', 'encoded by', 'septation ring formation regulator EzrA    lmo1594']
ASK WHERE { resource:septation_ring_formation_regulator_EzrA____lmo1594 property:encoded_by resource:septation_ring_formation_regulator_EzrA____lmo1594 }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q181394 Q181394 Q79529
USER
How many nutrients do exactly 16 nutrients or chemical substances contact with ?
(c(Q181394)|c(Q79529),P129,c(Q181394))
action count
action equal
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
value 16
[[{'concept': 'Q181394'}, {'concept': 'Q79529'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?e ) AS ?o ) WHERE { { SELECT DISTINCT ?e ( COUNT ( ?n ) AS ?f ) WHERE { VALUES ( ?w ) { ( ontology:Q181394 ) ( ontology:Q79529 ) } . ?n rdf:type ?w } GROUP BY ?e } . FILTER ( ?f = 16 ) }
action count
action equal
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
value 16
[[{'concept': 'nutrient'}, {'concept': 'chemical substance'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?e ) AS ?o ) WHERE { { SELECT DISTINCT ?e ( COUNT ( ?n ) AS ?f ) WHERE { VALUES ( ?w ) { ( ontology:nutrient ) ( ontology:chemical_substance ) } . ?n rdf:type ?w } GROUP BY ?e } . FILTER ( ?f = 16 ) }
[]
nutrient nutrient chemical substance
SYSTEM
4
Q21116162 Q21114578 Q21114576 Q21114582
(c(Q181394)|c(Q79529),P129,c(Q181394))
action count
action equal
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
value 16
[ANSWER]
[[{'concept': 'Q181394'}, {'concept': 'Q79529'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?e ) AS ?o ) WHERE { { SELECT DISTINCT ?e ( COUNT ( ?n ) AS ?f ) WHERE { VALUES ( ?w ) { ( ontology:Q181394 ) ( ontology:Q79529 ) } . ?n rdf:type ?w } GROUP BY ?e } . FILTER ( ?f = 16 ) }
Adenosine receptor A2a Gamma-aminobutyric acid receptor subunit alpha-3 Gamma-aminobutyric acid receptor subunit alpha-5 Gamma-aminobutyric acid receptor subunit alpha-2
4
action count
action equal
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
value 16
[[{'concept': 'nutrient'}, {'concept': 'chemical substance'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?e ) AS ?o ) WHERE { { SELECT DISTINCT ?e ( COUNT ( ?n ) AS ?f ) WHERE { VALUES ( ?w ) { ( ontology:nutrient ) ( ontology:chemical_substance ) } . ?n rdf:type ?w } GROUP BY ?e } . FILTER ( ?f = 16 ) }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q24254053
P681
Q15989253
USER
Which part is a component of septation ring formation regulator EzrA    lmo1594 ?
(Q24254053,P681,c(Q15989253))
action filter_type
action find
entity Q24254053
relation P681
type Q15989253
['Q24254053', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?o WHERE { resource:Q24254053 property:P681 ?o . ?o rdf:type ontology:Q15989253 }
septation ring formation regulator EzrA    lmo1594
action filter_type
action find
entity septation ring formation regulator EzrA    lmo1594
relation cell component
type part
['septation ring formation regulator EzrA    lmo1594', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?o WHERE { resource:septation_ring_formation_regulator_EzrA____lmo1594 property:cell_component ?o . ?o rdf:type ontology:part }
[]
part
Q14349455
SYSTEM
membrane
Q14349455
(Q24254053,P681,c(Q15989253))
action filter_type
action find
entity Q24254053
relation P681
type Q15989253
The [ANSWER] is a component of septation ring formation regulator EzrA lmo1594
['Q24254053', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?o WHERE { resource:Q24254053 property:P681 ?o . ?o rdf:type ontology:Q15989253 }
membrane
The membrane is a component of septation ring formation regulator EzrA lmo1594
membrane
action filter_type
action find
entity septation ring formation regulator EzrA    lmo1594
relation cell component
type part
['septation ring formation regulator EzrA    lmo1594', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?o WHERE { resource:septation_ring_formation_regulator_EzrA____lmo1594 property:cell_component ?o . ?o rdf:type ontology:part }
[]