Simple Question (Direct)
Simple Question
Q23504341
P681
Q15989253
USER
What is a component of thymidylate synthase    HMPREF0351_11122 ?
(Q23504341,P681,c(Q15989253))
action filter_type
action find
entity Q23504341
relation P681
type Q15989253
['Q23504341', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?w WHERE { ?w rdf:type ontology:Q15989253 . resource:Q23504341 property:P681 ?w }
thymidylate synthase    HMPREF0351_11122
action filter_type
action find
entity thymidylate synthase    HMPREF0351_11122
relation cell component
type part
['thymidylate synthase    HMPREF0351_11122', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?w WHERE { ?w rdf:type ontology:part . resource:thymidylate_synthase____HMPREF0351_11122 property:cell_component ?w }
[]
part
Q79899
SYSTEM
cytoplasm
Q79899
(Q23504341,P681,c(Q15989253))
action filter_type
action find
entity Q23504341
relation P681
type Q15989253
A component of thymidylate synthase HMPREF0351_11122 is in [ANSWER]
['Q23504341', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?w WHERE { ?w rdf:type ontology:Q15989253 . resource:Q23504341 property:P681 ?w }
cytoplasm
A component of thymidylate synthase HMPREF0351_11122 is in cytoplasm
cytoplasm
action filter_type
action find
entity thymidylate synthase    HMPREF0351_11122
relation cell component
type part
['thymidylate synthase    HMPREF0351_11122', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?w WHERE { ?w rdf:type ontology:part . resource:thymidylate_synthase____HMPREF0351_11122 property:cell_component ?w }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23504341
P703
Q631147
USER
Which taxon does thymidylate synthase    HMPREF0351_11122 belong to ?
(Q23504341,P703,c(Q631147))
action filter_type
action find
entity Q23504341
relation P703
type Q631147
['Q23504341', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?a WHERE { resource:Q23504341 property:P703 ?a . ?a rdf:type ontology:Q631147 }
thymidylate synthase    HMPREF0351_11122
action filter_type
action find
entity thymidylate synthase    HMPREF0351_11122
relation found in taxon
type infraspecific name
['thymidylate synthase    HMPREF0351_11122', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?a WHERE { resource:thymidylate_synthase____HMPREF0351_11122 property:found_in_taxon ?a . ?a rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102966
SYSTEM
Enterococcus faecium DO
Q21102966
(Q23504341,P703,c(Q631147))
action filter_type
action find
entity Q23504341
relation P703
type Q631147
Thymidylate synthase HMPREF0351_11122 belongs to [ANSWER]
['Q23504341', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?a WHERE { resource:Q23504341 property:P703 ?a . ?a rdf:type ontology:Q631147 }
Enterococcus faecium DO
Thymidylate synthase HMPREF0351_11122 belongs to Enterococcus faecium DO
Enterococcus faecium DO
action filter_type
action find
entity thymidylate synthase    HMPREF0351_11122
relation found in taxon
type infraspecific name
['thymidylate synthase    HMPREF0351_11122', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?a WHERE { resource:thymidylate_synthase____HMPREF0351_11122 property:found_in_taxon ?a . ?a rdf:type ontology:infraspecific_name }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q24104954
Q631147
USER
And how about methionyl-tRNA synthetase    NGR_c16040?
(Q24104954,P703,c(Q631147))
action filter_type
action find
entity Q24104954
relation P703
type Q631147
['Q24104954', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:Q631147 . resource:Q24104954 property:P703 ?j }
methionyl-tRNA synthetase    NGR_c16040
action filter_type
action find
entity methionyl-tRNA synthetase    NGR_c16040
relation found in taxon
type infraspecific name
['methionyl-tRNA synthetase    NGR_c16040', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:infraspecific_name . resource:methionyl-tRNA_synthetase____NGR_c16040 property:found_in_taxon ?j }
[]
infraspecific name
Q23309229
SYSTEM
Sinorhizobium fredii NGR234
Q23309229
(Q24104954,P703,c(Q631147))
action filter_type
action find
entity Q24104954
relation P703
type Q631147
[ANSWER]
['Q24104954', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:Q631147 . resource:Q24104954 property:P703 ?j }
Sinorhizobium fredii NGR234
Sinorhizobium fredii NGR234
action filter_type
action find
entity methionyl-tRNA synthetase    NGR_c16040
relation found in taxon
type infraspecific name
['methionyl-tRNA synthetase    NGR_c16040', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:infraspecific_name . resource:methionyl-tRNA_synthetase____NGR_c16040 property:found_in_taxon ?j }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Single entity type|Indirect
P703
Q631147 Q863908
USER
How many infraspecific names do less number of nucleic acid sequences belong to than that infraspecific name ?
(c(Q863908),P703,c(Q631147))
action count
action less
action find_reverse_tuple_counts
relation P703
type Q631147
type Q863908
action count
action filter_type
action find_reverse
entity Q23309229
relation P703
type Q863908
[{'concept': 'Q863908'}, 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ( COUNT ( ?n ) AS ?p ) WHERE { { SELECT DISTINCT ?n ( COUNT ( ?c ) AS ?q ) WHERE { ?c property:P703 ?n . ?c rdf:type ontology:Q863908 . ?n rdf:type ontology:Q631147 } GROUP BY ?n } . FILTER ( ?q < ?t ) . { SELECT DISTINCT ( COUNT ( ?h ) AS ?t ) WHERE { ?h property:P703 resource:Q23309229 . ?h rdf:type ontology:Q863908 } } }
action count
action less
action find_reverse_tuple_counts
relation found in taxon
type infraspecific name
type nucleic acid sequence
action count
action filter_type
action find_reverse
entity Sinorhizobium fredii NGR234
relation found in taxon
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ( COUNT ( ?n ) AS ?p ) WHERE { { SELECT DISTINCT ?n ( COUNT ( ?c ) AS ?q ) WHERE { ?c property:found_in_taxon ?n . ?c rdf:type ontology:nucleic_acid_sequence . ?n rdf:type ontology:infraspecific_name } GROUP BY ?n } . FILTER ( ?q < ?t ) . { SELECT DISTINCT ( COUNT ( ?h ) AS ?t ) WHERE { ?h property:found_in_taxon resource:Sinorhizobium_fredii_NGR234 . ?h rdf:type ontology:nucleic_acid_sequence } } }
[]
infraspecific name nucleic acid sequence
SYSTEM
77
Q21102990 Q21102991 Q21102992 Q21102993 Q21102994 Q21102995 Q21102996 Q21102997 Q21102999 Q21102960 Q27510868 Q21065229 Q21079489 Q21102919 Q21102943 Q21102942 Q21102941 Q21102940 Q21102947 Q21102946 Q21102920 Q21102965 Q21102964 Q21102949 Q21102966 Q21102961 Q21102930 Q21102963 Q21102962 Q21102921 Q21102987 Q21102922 Q21102925 Q21102924 Q21102927 Q21102928 Q21102974 Q21102918 Q21102989 Q21079490 Q21079491 Q21102985 Q21102984 Q21102983 Q21102982 Q21102981 Q21102980 Q21102973 Q21102969 Q21102944 Q21102968 Q21102954 Q21102955 Q21102956 Q21102957 Q21102950 Q21102951 Q21102978 Q21102953 Q21102976 Q21102977 Q21102975 Q21102972 Q21102959 Q21102970 Q21102971 Q21064863 Q21064832 Q21102931 Q21102948 Q21102937 Q21102934 Q21102979 Q21079559 Q21102938 Q21102939 Q21102967
(c(Q863908),P703,c(Q631147))
action count
action less
action find_reverse_tuple_counts
relation P703
type Q631147
type Q863908
action count
action filter_type
action find_reverse
entity Q23309229
relation P703
type Q863908
[ANSWER]
[{'concept': 'Q863908'}, 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ( COUNT ( ?n ) AS ?p ) WHERE { { SELECT DISTINCT ?n ( COUNT ( ?c ) AS ?q ) WHERE { ?c property:P703 ?n . ?c rdf:type ontology:Q863908 . ?n rdf:type ontology:Q631147 } GROUP BY ?n } . FILTER ( ?q < ?t ) . { SELECT DISTINCT ( COUNT ( ?h ) AS ?t ) WHERE { ?h property:P703 resource:Q23309229 . ?h rdf:type ontology:Q863908 } } }
Mycoplasma pneumoniae M129 Thermotoga maritima MSB8 Gardnerella vaginalis ATCC 14019 Burkholderia mallei ATCC 23344 Streptococcus mitis B6 Burkholderia pseudomallei K96243 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Salmonella enterica subsp. enterica serovar Typhi str. CT18 Geobacter sulfurreducens PCA Streptococcus suis BM407 Saccharomyces cerevisiae S288c Leptospira interrogans serovar Lai str. 56601 Pseudomonas putida KT2440 Legionella pneumophila subsp. pneumophila str. Philadelphia 1 Yersinia pestis CO92 Yersinia enterocolitica subsp. enterocolitica 8081 Shigella flexneri 2a str. 301 Shigella dysenteriae Sd197 Vibrio parahaemolyticus RIMD 2210633 Vibrio fischeri ES114 Acinetobacter pittii PHEA-2 Enterococcus faecalis V583 Streptococcus pyogenes M1 GAS Rickettsia prowazekii str. Madrid E Enterococcus faecium DO Streptococcus mutans UA159 Escherichia coli O157:H7 str. Sakai Streptococcus pneumoniae R6 Streptococcus agalactiae 2603V/R Neisseria gonorrhoeae FA 1090 Mycobacterium tuberculosis H37Rv Neisseria meningitidis MC58 Bordetella pertussis Tohama I Bordetella bronchiseptica 253 Enterobacter aerogenes KCTC 2190 Enterobacter cloacae subsp. cloacae ATCC 13047 Clostridium botulinum A str. Hall Sinorhizobium meliloti 1021 Mycoplasma mycoides subsp. mycoides SC str. PG1 Pseudomonas syringae pv. syringae B728a Xanthomonas campestris pv. campestris str. ATCC 33913 Mycobacterium leprae TN Mycobacterium bovis AF2122/97 Corynebacterium glutamicum ATCC 13032 Bifidobacterium bifidum PRL2010 Listeria monocytogenes EGD-e Lactobacillus salivarius UCC118 Clostridium acetobutylicum ATCC 824 Bacillus anthracis str. Sterne Aeromonas hydrophila subsp. hydrophila ATCC 7966 Bacillus anthracis str. Ames Rhodospirillum rubrum ATCC 11170 Chloroflexus aurantiacus J-10-fl Staphylococcus aureus subsp. aureus NCTC 8325 Staphylococcus epidermidis ATCC 12228 Bacteroides fragilis YCH46 Fusobacterium nucleatum subsp. nucleatum ATCC 25586 Lactobacillus casei ATCC 334 Rhodobacter sphaeroides 2.4.1 Peptoclostridium difficile 630 Lactobacillus acidophilus NCFM Clostridium botulinum A str. ATCC 3502 Bacillus thuringiensis serovar konkukian str. 97-27 Deinococcus radiodurans R1 Bacillus cereus ATCC 14579 Bacillus subtilis subsp. subtilis str. 168 Bordetella parapertussis Bpp5 Coxiella burnetii RSA 493 Escherichia coli UMN026 Haemophilus influenzae Rd KW20 Escherichia coli O104:H4 str. 2011C-3493 Escherichia coli O83:H1 str. NRG 857C Lactobacillus plantarum WCFS1 Salinibacter ruber DSM 13855 Escherichia coli str. K-12 substr. MG1655 Klebsiella pneumoniae subsp. pneumoniae HS11286 Lactococcus lactis subsp. lactis Il1403
77
action count
action less
action find_reverse_tuple_counts
relation found in taxon
type infraspecific name
type nucleic acid sequence
action count
action filter_type
action find_reverse
entity Sinorhizobium fredii NGR234
relation found in taxon
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ( COUNT ( ?n ) AS ?p ) WHERE { { SELECT DISTINCT ?n ( COUNT ( ?c ) AS ?q ) WHERE { ?c property:found_in_taxon ?n . ?c rdf:type ontology:nucleic_acid_sequence . ?n rdf:type ontology:infraspecific_name } GROUP BY ?n } . FILTER ( ?q < ?t ) . { SELECT DISTINCT ( COUNT ( ?h ) AS ?t ) WHERE { ?h property:found_in_taxon resource:Sinorhizobium_fredii_NGR234 . ?h rdf:type ontology:nucleic_acid_sequence } } }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23504341
P682
Q2996394
USER
Which biological process is thymidylate synthase    HMPREF0351_11122 involved in ?
(Q23504341,P682,c(Q2996394))
action filter_type
action find
entity Q23504341
relation P682
type Q2996394
['Q23504341', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?m WHERE { resource:Q23504341 property:P682 ?m . ?m rdf:type ontology:Q2996394 }
thymidylate synthase    HMPREF0351_11122
action filter_type
action find
entity thymidylate synthase    HMPREF0351_11122
relation biological process
type biological process
['thymidylate synthase    HMPREF0351_11122', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?m WHERE { resource:thymidylate_synthase____HMPREF0351_11122 property:biological_process ?m . ?m rdf:type ontology:biological_process }
[]
biological process
Q518328
SYSTEM
methylation
Q518328
(Q23504341,P682,c(Q2996394))
action filter_type
action find
entity Q23504341
relation P682
type Q2996394
[ANSWER] is thymidylate synthase HMPREF0351_11122 involved in
['Q23504341', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?m WHERE { resource:Q23504341 property:P682 ?m . ?m rdf:type ontology:Q2996394 }
methylation
Methylation is thymidylate synthase HMPREF0351_11122 involved in
methylation
action filter_type
action find
entity thymidylate synthase    HMPREF0351_11122
relation biological process
type biological process
['thymidylate synthase    HMPREF0351_11122', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?m WHERE { resource:thymidylate_synthase____HMPREF0351_11122 property:biological_process ?m . ?m rdf:type ontology:biological_process }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23504341
P702
Q863908
USER
What is the gene that encodes that nutrient ?
(Q518328,P702,c(Q863908))
action filter_type
action find
entity Q23504341
relation P702
type Q863908
['Q518328', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?c WHERE { ?c rdf:type ontology:Q863908 . resource:Q23504341 property:P702 ?c }
thymidylate synthase    HMPREF0351_11122
action filter_type
action find
entity thymidylate synthase    HMPREF0351_11122
relation encoded by
type nucleic acid sequence
['methylation', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?c WHERE { ?c rdf:type ontology:nucleic_acid_sequence . resource:thymidylate_synthase____HMPREF0351_11122 property:encoded_by ?c }
[]
nucleic acid sequence
Q23181057
SYSTEM
thymidylate synthase    HMPREF0351_11122
Q23181057
(Q518328,P702,c(Q863908))
action filter_type
action find
entity Q23504341
relation P702
type Q863908
The gene that encodes that nutrient is the thymidylate synthase HMPREF0351 11122
['Q518328', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?c WHERE { ?c rdf:type ontology:Q863908 . resource:Q23504341 property:P702 ?c }
thymidylate synthase    HMPREF0351_11122
The gene that encodes that nutrient is the thymidylate synthase HMPREF0351 11122
thymidylate synthase    HMPREF0351_11122
action filter_type
action find
entity thymidylate synthase    HMPREF0351_11122
relation encoded by
type nucleic acid sequence
['methylation', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?c WHERE { ?c rdf:type ontology:nucleic_acid_sequence . resource:thymidylate_synthase____HMPREF0351_11122 property:encoded_by ?c }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q23181057 Q23588313
P702
Q181394
USER
Is Putative succinate dehydrogenase, iron-sulfur subunit    MAB_4423 the gene that is encoded by that nucleic acid sequence ?
(Q23588313,P702,Q23181057)
action is_in
entity Q23588313
action find
entity Q23181057
relation P702
['Q23588313', 'P702', 'Q23181057']
ASK WHERE { resource:Q23181057 property:P702 resource:Q23588313 }
thymidylate synthase    HMPREF0351_11122 Putative succinate dehydrogenase, iron-sulfur subunit    MAB_4423
action is_in
entity Putative succinate dehydrogenase, iron-sulfur subunit    MAB_4423
action find
entity thymidylate synthase    HMPREF0351_11122
relation encoded by
['Putative succinate dehydrogenase, iron-sulfur subunit    MAB_4423', 'encoded by', 'thymidylate synthase    HMPREF0351_11122']
ASK WHERE { resource:thymidylate_synthase____HMPREF0351_11122 property:encoded_by resource:Putative_succinate_dehydrogenase,_iron-sulfur_subunit____MAB_4423 }
[]
nutrient
SYSTEM
NO
(Q23588313,P702,Q23181057)
action is_in
entity Q23588313
action find
entity Q23181057
relation P702
[ANSWER]
['Q23588313', 'P702', 'Q23181057']
ASK WHERE { resource:Q23181057 property:P702 resource:Q23588313 }
No
action is_in
entity Putative succinate dehydrogenase, iron-sulfur subunit    MAB_4423
action find
entity thymidylate synthase    HMPREF0351_11122
relation encoded by
['Putative succinate dehydrogenase, iron-sulfur subunit    MAB_4423', 'encoded by', 'thymidylate synthase    HMPREF0351_11122']
ASK WHERE { resource:thymidylate_synthase____HMPREF0351_11122 property:encoded_by resource:Putative_succinate_dehydrogenase,_iron-sulfur_subunit____MAB_4423 }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q5529366
Q181394
USER
And also tell me about serine/threonine-protein kinase GCN2 YDR283C?
(Q5529366,P702,c(Q181394))
action filter_type
action find
entity Q5529366
relation P702
type Q181394
['Q5529366', 'P702', {'concept': 'Q181394'}]
SELECT DISTINCT ?j WHERE { resource:Q5529366 property:P702 ?j . ?j rdf:type ontology:Q181394 }
serine/threonine-protein kinase GCN2 YDR283C
action filter_type
action find
entity serine/threonine-protein kinase GCN2 YDR283C
relation encoded by
type nutrient
['serine/threonine-protein kinase GCN2 YDR283C', 'encoded by', {'concept': 'nutrient'}]
SELECT DISTINCT ?j WHERE { resource:serine/threonine-protein_kinase_GCN2_YDR283C property:encoded_by ?j . ?j rdf:type ontology:nutrient }
[]
nutrient
Q5529366
SYSTEM
serine/threonine-protein kinase GCN2 YDR283C
Q5529366
(Q5529366,P702,c(Q181394))
action filter_type
action find
entity Q5529366
relation P702
type Q181394
[ANSWER]
['Q5529366', 'P702', {'concept': 'Q181394'}]
SELECT DISTINCT ?j WHERE { resource:Q5529366 property:P702 ?j . ?j rdf:type ontology:Q181394 }
serine/threonine-protein kinase GCN2 YDR283C
serine/threonine-protein kinase GCN2 YDR283C
action filter_type
action find
entity serine/threonine-protein kinase GCN2 YDR283C
relation encoded by
type nutrient
['serine/threonine-protein kinase GCN2 YDR283C', 'encoded by', {'concept': 'nutrient'}]
SELECT DISTINCT ?j WHERE { resource:serine/threonine-protein_kinase_GCN2_YDR283C property:encoded_by ?j . ?j rdf:type ontology:nutrient }
[]