Simple Question (Direct)
Simple Question
Q22258911
P703
Q631147
USER
Where is oxalyl-CoA decarboxylase    LBA0396 found ?
(Q22258911,P703,c(Q631147))
action filter_type
action find
entity Q22258911
relation P703
type Q631147
['Q22258911', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?s WHERE { resource:Q22258911 property:P703 ?s . ?s rdf:type ontology:Q631147 }
oxalyl-CoA decarboxylase    LBA0396
action filter_type
action find
entity oxalyl-CoA decarboxylase    LBA0396
relation found in taxon
type infraspecific name
['oxalyl-CoA decarboxylase    LBA0396', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?s WHERE { resource:oxalyl-CoA_decarboxylase____LBA0396 property:found_in_taxon ?s . ?s rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102977
SYSTEM
Lactobacillus acidophilus NCFM
Q21102977
(Q22258911,P703,c(Q631147))
action filter_type
action find
entity Q22258911
relation P703
type Q631147
Oxalyl-CoA decarboxylase LBA0396 is found in [ANSWER]
['Q22258911', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?s WHERE { resource:Q22258911 property:P703 ?s . ?s rdf:type ontology:Q631147 }
Lactobacillus acidophilus NCFM
Oxalyl-CoA decarboxylase LBA0396 is found in Lactobacillus acidophilus NCFM
Lactobacillus acidophilus NCFM
action filter_type
action find
entity oxalyl-CoA decarboxylase    LBA0396
relation found in taxon
type infraspecific name
['oxalyl-CoA decarboxylase    LBA0396', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?s WHERE { resource:oxalyl-CoA_decarboxylase____LBA0396 property:found_in_taxon ?s . ?s rdf:type ontology:infraspecific_name }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q181394 Q79529 Q181394
USER
How many nutrients do exactly 10 chemical substances or nutrients interact with ?
(c(Q79529)|c(Q181394),P129,c(Q181394))
action count
action equal
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
value 10
[[{'concept': 'Q79529'}, {'concept': 'Q181394'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?c ) AS ?m ) WHERE { { SELECT DISTINCT ?c ( COUNT ( ?s ) AS ?a ) WHERE { { ?s property:P129 ?c . ?c rdf:type ontology:Q181394 . ?s rdf:type ontology:Q79529 } UNION { ?c rdf:type ontology:Q181394 . ?s rdf:type ontology:Q181394 . ?s property:P129 ?c } } GROUP BY ?c } . FILTER ( ?a = 10 ) }
action count
action equal
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
value 10
[[{'concept': 'chemical substance'}, {'concept': 'nutrient'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?c ) AS ?m ) WHERE { { SELECT DISTINCT ?c ( COUNT ( ?s ) AS ?a ) WHERE { { ?s property:physically_interacts_with ?c . ?c rdf:type ontology:nutrient . ?s rdf:type ontology:chemical_substance } UNION { ?c rdf:type ontology:nutrient . ?s rdf:type ontology:nutrient . ?s property:physically_interacts_with ?c } } GROUP BY ?c } . FILTER ( ?a = 10 ) }
[]
nutrient chemical substance nutrient
SYSTEM
6
Q21154358 Q7673856 Q21115962 Q12746120 Q5629167 Q21497939
(c(Q79529)|c(Q181394),P129,c(Q181394))
action count
action equal
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
value 10
[ANSWER]
[[{'concept': 'Q79529'}, {'concept': 'Q181394'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?c ) AS ?m ) WHERE { { SELECT DISTINCT ?c ( COUNT ( ?s ) AS ?a ) WHERE { { ?s property:P129 ?c . ?c rdf:type ontology:Q181394 . ?s rdf:type ontology:Q79529 } UNION { ?c rdf:type ontology:Q181394 . ?s rdf:type ontology:Q181394 . ?s property:P129 ?c } } GROUP BY ?c } . FILTER ( ?a = 10 ) }
Histone deacetylase 3 Substance-P receptor Glutamate receptor 2 Muscarinic acetylcholine receptor M5 Histone deacetylase 1 5-hydroxytryptamine receptor 7
6
action count
action equal
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
value 10
[[{'concept': 'chemical substance'}, {'concept': 'nutrient'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?c ) AS ?m ) WHERE { { SELECT DISTINCT ?c ( COUNT ( ?s ) AS ?a ) WHERE { { ?s property:physically_interacts_with ?c . ?c rdf:type ontology:nutrient . ?s rdf:type ontology:chemical_substance } UNION { ?c rdf:type ontology:nutrient . ?s rdf:type ontology:nutrient . ?s property:physically_interacts_with ?c } } GROUP BY ?c } . FILTER ( ?a = 10 ) }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type
Q22258911
P688
Q863908
USER
How many nucleic acid sequences encodes oxalyl-CoA decarboxylase    LBA0396 ?
(c(Q863908),P688,Q22258911)
action count
action filter_type
action find_reverse
entity Q22258911
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q22258911']
SELECT DISTINCT ( COUNT ( ?l ) AS ?z ) WHERE { ?l property:P688 resource:Q22258911 . ?l rdf:type ontology:Q863908 }
oxalyl-CoA decarboxylase    LBA0396
action count
action filter_type
action find_reverse
entity oxalyl-CoA decarboxylase    LBA0396
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'oxalyl-CoA decarboxylase    LBA0396']
SELECT DISTINCT ( COUNT ( ?l ) AS ?z ) WHERE { ?l property:encodes resource:oxalyl-CoA_decarboxylase____LBA0396 . ?l rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
SYSTEM
1
Q22239773
(c(Q863908),P688,Q22258911)
action count
action filter_type
action find_reverse
entity Q22258911
relation P688
type Q863908
[ANSWER]
[{'concept': 'Q863908'}, 'P688', 'Q22258911']
SELECT DISTINCT ( COUNT ( ?l ) AS ?z ) WHERE { ?l property:P688 resource:Q22258911 . ?l rdf:type ontology:Q863908 }
oxalyl-CoA decarboxylase    LBA0396
1
action count
action filter_type
action find_reverse
entity oxalyl-CoA decarboxylase    LBA0396
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'oxalyl-CoA decarboxylase    LBA0396']
SELECT DISTINCT ( COUNT ( ?l ) AS ?z ) WHERE { ?l property:encodes resource:oxalyl-CoA_decarboxylase____LBA0396 . ?l rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q24278095
P688
Q863908
USER
Which nucleic acid sequence encodes hypothetical protein    O3K_00305 ?
(c(Q863908),P688,Q24278095)
action filter_type
action find_reverse
entity Q24278095
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q24278095']
SELECT DISTINCT ?s WHERE { ?s property:P688 resource:Q24278095 . ?s rdf:type ontology:Q863908 }
hypothetical protein    O3K_00305
action filter_type
action find_reverse
entity hypothetical protein    O3K_00305
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'hypothetical protein    O3K_00305']
SELECT DISTINCT ?s WHERE { ?s property:encodes resource:hypothetical_protein____O3K_00305 . ?s rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23111150
SYSTEM
hypothetical protein    O3K_00305
Q23111150
(c(Q863908),P688,Q24278095)
action filter_type
action find_reverse
entity Q24278095
relation P688
type Q863908
Hypothetical protein O3K 00305 encodes hypothetical protein O3K_00305
[{'concept': 'Q863908'}, 'P688', 'Q24278095']
SELECT DISTINCT ?s WHERE { ?s property:P688 resource:Q24278095 . ?s rdf:type ontology:Q863908 }
hypothetical protein    O3K_00305
Hypothetical protein O3K 00305 encodes hypothetical protein O3K_00305
hypothetical protein    O3K_00305
action filter_type
action find_reverse
entity hypothetical protein    O3K_00305
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'hypothetical protein    O3K_00305']
SELECT DISTINCT ?s WHERE { ?s property:encodes resource:hypothetical_protein____O3K_00305 . ?s rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q23111150 Q24278095
P702
Q181394
USER
Is hypothetical protein    O3K_00305 encoded by that nucleic acid sequence ?
(Q24278095,P702,Q23111150)
action is_in
entity Q23111150
action find
entity Q24278095
relation P702
['Q24278095', 'P702', 'Q23111150']
ASK WHERE { resource:Q24278095 property:P702 resource:Q23111150 }
hypothetical protein    O3K_00305 hypothetical protein    O3K_00305
action is_in
entity hypothetical protein    O3K_00305
action find
entity hypothetical protein    O3K_00305
relation encoded by
['hypothetical protein    O3K_00305', 'encoded by', 'hypothetical protein    O3K_00305']
ASK WHERE { resource:hypothetical_protein____O3K_00305 property:encoded_by resource:hypothetical_protein____O3K_00305 }
[]
nutrient
SYSTEM
YES
(Q24278095,P702,Q23111150)
action is_in
entity Q23111150
action find
entity Q24278095
relation P702
[ANSWER]
['Q24278095', 'P702', 'Q23111150']
ASK WHERE { resource:Q24278095 property:P702 resource:Q23111150 }
Yes
action is_in
entity hypothetical protein    O3K_00305
action find
entity hypothetical protein    O3K_00305
relation encoded by
['hypothetical protein    O3K_00305', 'encoded by', 'hypothetical protein    O3K_00305']
ASK WHERE { resource:hypothetical_protein____O3K_00305 property:encoded_by resource:hypothetical_protein____O3K_00305 }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q22258911 Q14907682
P680
Q44424
USER
Does sodium ion binding represent the molecular function of oxalyl-CoA decarboxylase    LBA0396 ?
(Q22258911,P680,Q14907682)
action is_in
entity Q14907682
action find
entity Q22258911
relation P680
['Q22258911', 'P680', 'Q14907682']
ASK WHERE { resource:Q22258911 property:P680 resource:Q14907682 }
oxalyl-CoA decarboxylase    LBA0396 sodium ion binding
action is_in
entity sodium ion binding
action find
entity oxalyl-CoA decarboxylase    LBA0396
relation molecular function
['oxalyl-CoA decarboxylase    LBA0396', 'molecular function', 'sodium ion binding']
ASK WHERE { resource:oxalyl-CoA_decarboxylase____LBA0396 property:molecular_function resource:sodium_ion_binding }
[]
chemical bond
SYSTEM
NO
(Q22258911,P680,Q14907682)
action is_in
entity Q14907682
action find
entity Q22258911
relation P680
[ANSWER]
['Q22258911', 'P680', 'Q14907682']
ASK WHERE { resource:Q22258911 property:P680 resource:Q14907682 }
No
action is_in
entity sodium ion binding
action find
entity oxalyl-CoA decarboxylase    LBA0396
relation molecular function
['oxalyl-CoA decarboxylase    LBA0396', 'molecular function', 'sodium ion binding']
ASK WHERE { resource:oxalyl-CoA_decarboxylase____LBA0396 property:molecular_function resource:sodium_ion_binding }
[]
Verification (Boolean) (All)
Verification|3 entities, all direct, 2 are query entities
Q23111150 Q24278095 Q24251890
P688
Q181394
USER
Does hypothetical protein    O3K_00305 encode hypothetical protein    O3K_00305 and ATP synthase subunit gamma    lmo0091 ?
(Q23111150,P688,Q24278095) (Q23111150,P688,Q24251890)
action is_in
entity Q23111150
action intersection
action find_reverse
entity Q24278095
relation P688
action find_reverse
entity Q24251890
relation P688
['Q23111150', 'P688', 'Q24278095'] ['Q23111150', 'P688', 'Q24251890']
ASK WHERE { resource:Q23111150 property:P688 resource:Q24278095 . resource:Q23111150 property:P688 resource:Q24251890 }
hypothetical protein    O3K_00305 hypothetical protein    O3K_00305 ATP synthase subunit gamma    lmo0091
action is_in
entity hypothetical protein    O3K_00305
action intersection
action find_reverse
entity hypothetical protein    O3K_00305
relation encodes
action find_reverse
entity ATP synthase subunit gamma    lmo0091
relation encodes
['hypothetical protein    O3K_00305', 'encodes', 'hypothetical protein    O3K_00305'] ['hypothetical protein    O3K_00305', 'encodes', 'ATP synthase subunit gamma    lmo0091']
ASK WHERE { resource:hypothetical_protein____O3K_00305 property:encodes resource:hypothetical_protein____O3K_00305 . resource:hypothetical_protein____O3K_00305 property:encodes resource:ATP_synthase_subunit_gamma____lmo0091 }
[]
nutrient
SYSTEM
YES and NO respectively
(Q23111150,P688,Q24278095) (Q23111150,P688,Q24251890)
action is_in
entity Q23111150
action intersection
action find_reverse
entity Q24278095
relation P688
action find_reverse
entity Q24251890
relation P688
[ANSWER]
['Q23111150', 'P688', 'Q24278095'] ['Q23111150', 'P688', 'Q24251890']
ASK WHERE { resource:Q23111150 property:P688 resource:Q24278095 . resource:Q23111150 property:P688 resource:Q24251890 }
YES and NO respectively
action is_in
entity hypothetical protein    O3K_00305
action intersection
action find_reverse
entity hypothetical protein    O3K_00305
relation encodes
action find_reverse
entity ATP synthase subunit gamma    lmo0091
relation encodes
['hypothetical protein    O3K_00305', 'encodes', 'hypothetical protein    O3K_00305'] ['hypothetical protein    O3K_00305', 'encodes', 'ATP synthase subunit gamma    lmo0091']
ASK WHERE { resource:hypothetical_protein____O3K_00305 property:encodes resource:hypothetical_protein____O3K_00305 . resource:hypothetical_protein____O3K_00305 property:encodes resource:ATP_synthase_subunit_gamma____lmo0091 }
[]