Simple Question (Direct)
Simple Question
Q21603689
P702
Q863908
USER
Which gene encodes ATP-dependent Clp protease proteolytic subunit    BB_0611 ?
(Q21603689,P702,c(Q863908))
action filter_type
action find
entity Q21603689
relation P702
type Q863908
['Q21603689', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?d WHERE { ?d rdf:type ontology:Q863908 . resource:Q21603689 property:P702 ?d }
ATP-dependent Clp protease proteolytic subunit    BB_0611
action filter_type
action find
entity ATP-dependent Clp protease proteolytic subunit    BB_0611
relation encoded by
type nucleic acid sequence
['ATP-dependent Clp protease proteolytic subunit    BB_0611', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?d WHERE { ?d rdf:type ontology:nucleic_acid_sequence . resource:ATP-dependent_Clp_protease_proteolytic_subunit____BB_0611 property:encoded_by ?d }
[]
nucleic acid sequence
Q21602175
SYSTEM
ATP-dependent Clp protease proteolytic subunit    BB_0611
Q21602175
(Q21603689,P702,c(Q863908))
action filter_type
action find
entity Q21603689
relation P702
type Q863908
ATP-dependent Clp protease proteolytic subunit BB 0611 encodes ATP-dependent Clp protease proteolytic subunit BB_0611
['Q21603689', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?d WHERE { ?d rdf:type ontology:Q863908 . resource:Q21603689 property:P702 ?d }
ATP-dependent Clp protease proteolytic subunit    BB_0611
ATP-dependent Clp protease proteolytic subunit BB 0611 encodes ATP-dependent Clp protease proteolytic subunit BB_0611
ATP-dependent Clp protease proteolytic subunit    BB_0611
action filter_type
action find
entity ATP-dependent Clp protease proteolytic subunit    BB_0611
relation encoded by
type nucleic acid sequence
['ATP-dependent Clp protease proteolytic subunit    BB_0611', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?d WHERE { ?d rdf:type ontology:nucleic_acid_sequence . resource:ATP-dependent_Clp_protease_proteolytic_subunit____BB_0611 property:encoded_by ?d }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21602175
P703
Q16521
USER
Where is that nucleic acid sequence found ?
(Q21602175,P703,c(Q16521))
action filter_type
action find
entity Q21602175
relation P703
type Q16521
['Q21602175', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?a WHERE { resource:Q21602175 property:P703 ?a . ?a rdf:type ontology:Q16521 }
ATP-dependent Clp protease proteolytic subunit    BB_0611
action filter_type
action find
entity ATP-dependent Clp protease proteolytic subunit    BB_0611
relation found in taxon
type taxon
['ATP-dependent Clp protease proteolytic subunit    BB_0611', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?a WHERE { resource:ATP-dependent_Clp_protease_proteolytic_subunit____BB_0611 property:found_in_taxon ?a . ?a rdf:type ontology:taxon }
[]
taxon
Q21065227
SYSTEM
Borrelia burgdorferi B31
Q21065227
(Q21602175,P703,c(Q16521))
action filter_type
action find
entity Q21602175
relation P703
type Q16521
That nucleic acid sequence is found in [ANSWER]
['Q21602175', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?a WHERE { resource:Q21602175 property:P703 ?a . ?a rdf:type ontology:Q16521 }
Borrelia burgdorferi B31
That nucleic acid sequence is found in Borrelia burgdorferi B31
Borrelia burgdorferi B31
action filter_type
action find
entity ATP-dependent Clp protease proteolytic subunit    BB_0611
relation found in taxon
type taxon
['ATP-dependent Clp protease proteolytic subunit    BB_0611', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?a WHERE { resource:ATP-dependent_Clp_protease_proteolytic_subunit____BB_0611 property:found_in_taxon ?a . ?a rdf:type ontology:taxon }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21602175
P688
Q181394
USER
Which nutrient is encoded by ATP-dependent Clp protease proteolytic subunit    BB_0611 ?
(Q21602175,P688,c(Q181394))
action filter_type
action find
entity Q21602175
relation P688
type Q181394
['Q21602175', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?k WHERE { resource:Q21602175 property:P688 ?k . ?k rdf:type ontology:Q181394 }
ATP-dependent Clp protease proteolytic subunit    BB_0611
action filter_type
action find
entity ATP-dependent Clp protease proteolytic subunit    BB_0611
relation encodes
type nutrient
['ATP-dependent Clp protease proteolytic subunit    BB_0611', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?k WHERE { resource:ATP-dependent_Clp_protease_proteolytic_subunit____BB_0611 property:encodes ?k . ?k rdf:type ontology:nutrient }
[]
nutrient
Q21603689
SYSTEM
ATP-dependent Clp protease proteolytic subunit    BB_0611
Q21603689
(Q21602175,P688,c(Q181394))
action filter_type
action find
entity Q21602175
relation P688
type Q181394
ATP-dependent Clp protease proteolytic subunit BB 0611 is encoded by ATP-dependent Clp protease proteolytic subunit BB_0611
['Q21602175', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?k WHERE { resource:Q21602175 property:P688 ?k . ?k rdf:type ontology:Q181394 }
ATP-dependent Clp protease proteolytic subunit    BB_0611
ATP-dependent Clp protease proteolytic subunit BB 0611 is encoded by ATP-dependent Clp protease proteolytic subunit BB_0611
ATP-dependent Clp protease proteolytic subunit    BB_0611
action filter_type
action find
entity ATP-dependent Clp protease proteolytic subunit    BB_0611
relation encodes
type nutrient
['ATP-dependent Clp protease proteolytic subunit    BB_0611', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?k WHERE { resource:ATP-dependent_Clp_protease_proteolytic_subunit____BB_0611 property:encodes ?k . ?k rdf:type ontology:nutrient }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q22238636
Q181394
USER
And also tell me about beta-galactosidase    LBA1462?
(Q22238636,P688,c(Q181394))
action filter_type
action find
entity Q22238636
relation P688
type Q181394
['Q22238636', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?i WHERE { resource:Q22238636 property:P688 ?i . ?i rdf:type ontology:Q181394 }
beta-galactosidase    LBA1462
action filter_type
action find
entity beta-galactosidase    LBA1462
relation encodes
type nutrient
['beta-galactosidase    LBA1462', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?i WHERE { resource:beta-galactosidase____LBA1462 property:encodes ?i . ?i rdf:type ontology:nutrient }
[]
nutrient
Q22257641
SYSTEM
beta-galactosidase    LBA1462
Q22257641
(Q22238636,P688,c(Q181394))
action filter_type
action find
entity Q22238636
relation P688
type Q181394
[ANSWER]
['Q22238636', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?i WHERE { resource:Q22238636 property:P688 ?i . ?i rdf:type ontology:Q181394 }
beta-galactosidase    LBA1462
beta-galactosidase    LBA1462
action filter_type
action find
entity beta-galactosidase    LBA1462
relation encodes
type nutrient
['beta-galactosidase    LBA1462', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?i WHERE { resource:beta-galactosidase____LBA1462 property:encodes ?i . ?i rdf:type ontology:nutrient }
[]
Verification (Boolean) (All)
Verification|3 entities, 2 direct, 2(direct) are query entities, subject is indirect
Q22257641 Q22238636 Q24620745
P702
Q863908
USER
Is that nutrient the gene that is encoded by beta-galactosidase    LBA1462 and TAC1 ?
(Q22257641,P702,Q22238636) (Q22257641,P702,Q24620745)
action is_in
entity Q22257641
action intersection
action find_reverse
entity Q22238636
relation P702
action find_reverse
entity Q24620745
relation P702
['Q22257641', 'P702', 'Q22238636'] ['Q22257641', 'P702', 'Q24620745']
ASK WHERE { resource:Q22257641 property:P702 resource:Q22238636 . resource:Q22257641 property:P702 resource:Q24620745 }
beta-galactosidase    LBA1462 beta-galactosidase    LBA1462 TAC1
action is_in
entity beta-galactosidase    LBA1462
action intersection
action find_reverse
entity beta-galactosidase    LBA1462
relation encoded by
action find_reverse
entity TAC1
relation encoded by
['beta-galactosidase    LBA1462', 'encoded by', 'beta-galactosidase    LBA1462'] ['beta-galactosidase    LBA1462', 'encoded by', 'TAC1']
ASK WHERE { resource:beta-galactosidase____LBA1462 property:encoded_by resource:beta-galactosidase____LBA1462 . resource:beta-galactosidase____LBA1462 property:encoded_by resource:TAC1 }
[]
nucleic acid sequence
SYSTEM
YES and NO respectively
(Q22257641,P702,Q22238636) (Q22257641,P702,Q24620745)
action is_in
entity Q22257641
action intersection
action find_reverse
entity Q22238636
relation P702
action find_reverse
entity Q24620745
relation P702
[ANSWER]
['Q22257641', 'P702', 'Q22238636'] ['Q22257641', 'P702', 'Q24620745']
ASK WHERE { resource:Q22257641 property:P702 resource:Q22238636 . resource:Q22257641 property:P702 resource:Q24620745 }
YES and NO respectively
action is_in
entity beta-galactosidase    LBA1462
action intersection
action find_reverse
entity beta-galactosidase    LBA1462
relation encoded by
action find_reverse
entity TAC1
relation encoded by
['beta-galactosidase    LBA1462', 'encoded by', 'beta-galactosidase    LBA1462'] ['beta-galactosidase    LBA1462', 'encoded by', 'TAC1']
ASK WHERE { resource:beta-galactosidase____LBA1462 property:encoded_by resource:beta-galactosidase____LBA1462 . resource:beta-galactosidase____LBA1462 property:encoded_by resource:TAC1 }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q22257641
P680
Q44424
USER
What represents the molecular function of that nutrient ?
action filter_type
action find
entity Q22257641
relation P680
type Q44424
SELECT DISTINCT ?u WHERE { resource:Q22257641 property:P680 ?u . ?u rdf:type ontology:Q44424 }
beta-galactosidase    LBA1462
action filter_type
action find
entity beta-galactosidase    LBA1462
relation molecular function
type chemical bond
SELECT DISTINCT ?u WHERE { resource:beta-galactosidase____LBA1462 property:molecular_function ?u . ?u rdf:type ontology:chemical_bond }
[]
chemical bond
Q13667380
SYSTEM
metal ion binding
Q13667380
action filter_type
action find
entity Q22257641
relation P680
type Q44424
The [ANSWER] represents the molecular function of that nutrient
SELECT DISTINCT ?u WHERE { resource:Q22257641 property:P680 ?u . ?u rdf:type ontology:Q44424 }
metal ion binding
The metal ion binding represents the molecular function of that nutrient
metal ion binding
action filter_type
action find
entity beta-galactosidase    LBA1462
relation molecular function
type chemical bond
SELECT DISTINCT ?u WHERE { resource:beta-galactosidase____LBA1462 property:molecular_function ?u . ?u rdf:type ontology:chemical_bond }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q22257641
P682
Q1057
USER
What is the metabolic process that beta-galactosidase    LBA1462 is involved in ?
(Q22257641,P682,c(Q1057))
action filter_type
action find
entity Q22257641
relation P682
type Q1057
['Q22257641', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?i WHERE { resource:Q22257641 property:P682 ?i . ?i rdf:type ontology:Q1057 }
beta-galactosidase    LBA1462
action filter_type
action find
entity beta-galactosidase    LBA1462
relation biological process
type metabolic process
['beta-galactosidase    LBA1462', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?i WHERE { resource:beta-galactosidase____LBA1462 property:biological_process ?i . ?i rdf:type ontology:metabolic_process }
[]
metabolic process
Q14762260
SYSTEM
carbohydrate metabolic process
Q14762260
(Q22257641,P682,c(Q1057))
action filter_type
action find
entity Q22257641
relation P682
type Q1057
The metabolic process that beta-galactosidase LBA 1462 is involved in is l [ANSWER]
['Q22257641', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?i WHERE { resource:Q22257641 property:P682 ?i . ?i rdf:type ontology:Q1057 }
carbohydrate metabolic process
The metabolic process that beta-galactosidase LBA 1462 is involved in is l carbohydrate metabolic process
carbohydrate metabolic process
action filter_type
action find
entity beta-galactosidase    LBA1462
relation biological process
type metabolic process
['beta-galactosidase    LBA1462', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?i WHERE { resource:beta-galactosidase____LBA1462 property:biological_process ?i . ?i rdf:type ontology:metabolic_process }
[]