Simple Question (Direct)
Simple Question
Q24123675
P682
Q1057
USER
What is the metabolic process that hypothetical protein    BP2815 is involved in ?
(Q24123675,P682,c(Q1057))
action filter_type
action find
entity Q24123675
relation P682
type Q1057
['Q24123675', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?a WHERE { resource:Q24123675 property:P682 ?a . ?a rdf:type ontology:Q1057 }
hypothetical protein    BP2815
action filter_type
action find
entity hypothetical protein    BP2815
relation biological process
type metabolic process
['hypothetical protein    BP2815', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?a WHERE { resource:hypothetical_protein____BP2815 property:biological_process ?a . ?a rdf:type ontology:metabolic_process }
[]
metabolic process
Q14762260
SYSTEM
carbohydrate metabolic process
Q14762260
(Q24123675,P682,c(Q1057))
action filter_type
action find
entity Q24123675
relation P682
type Q1057
The metabolic process that hypothetical protein BP2815 is involved in is the [ANSWER]
['Q24123675', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?a WHERE { resource:Q24123675 property:P682 ?a . ?a rdf:type ontology:Q1057 }
carbohydrate metabolic process
The metabolic process that hypothetical protein BP2815 is involved in is the carbohydrate metabolic process
carbohydrate metabolic process
action filter_type
action find
entity hypothetical protein    BP2815
relation biological process
type metabolic process
['hypothetical protein    BP2815', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?a WHERE { resource:hypothetical_protein____BP2815 property:biological_process ?a . ?a rdf:type ontology:metabolic_process }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q14762260
P361
Q2996394
USER
What is that metabolic process a component of ?
(Q14762260,P361,c(Q2996394))
action filter_type
action find
entity Q14762260
relation P361
type Q2996394
['Q14762260', 'P361', {'concept': 'Q2996394'}]
SELECT DISTINCT ?n WHERE { resource:Q14762260 property:P361 ?n . ?n rdf:type ontology:Q2996394 }
carbohydrate metabolic process
action filter_type
action find
entity carbohydrate metabolic process
relation part of
type biological process
['carbohydrate metabolic process', 'part of', {'concept': 'biological process'}]
SELECT DISTINCT ?n WHERE { resource:carbohydrate_metabolic_process property:part_of ?n . ?n rdf:type ontology:biological_process }
[]
biological process
Q21106266
SYSTEM
carbohydrate utilization
Q21106266
(Q14762260,P361,c(Q2996394))
action filter_type
action find
entity Q14762260
relation P361
type Q2996394
That metabolic process a component of is [ANSWER]
['Q14762260', 'P361', {'concept': 'Q2996394'}]
SELECT DISTINCT ?n WHERE { resource:Q14762260 property:P361 ?n . ?n rdf:type ontology:Q2996394 }
carbohydrate utilization
That metabolic process a component of is carbohydrate utilization
carbohydrate utilization
action filter_type
action find
entity carbohydrate metabolic process
relation part of
type biological process
['carbohydrate metabolic process', 'part of', {'concept': 'biological process'}]
SELECT DISTINCT ?n WHERE { resource:carbohydrate_metabolic_process property:part_of ?n . ?n rdf:type ontology:biological_process }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q24123675
P703
Q631147
USER
Which taxon does hypothetical protein    BP2815 belong to ?
(Q24123675,P703,c(Q631147))
action filter_type
action find
entity Q24123675
relation P703
type Q631147
['Q24123675', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?i WHERE { resource:Q24123675 property:P703 ?i . ?i rdf:type ontology:Q631147 }
hypothetical protein    BP2815
action filter_type
action find
entity hypothetical protein    BP2815
relation found in taxon
type infraspecific name
['hypothetical protein    BP2815', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?i WHERE { resource:hypothetical_protein____BP2815 property:found_in_taxon ?i . ?i rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102925
SYSTEM
Bordetella pertussis Tohama I
Q21102925
(Q24123675,P703,c(Q631147))
action filter_type
action find
entity Q24123675
relation P703
type Q631147
Hypothetical protein BP2815 belongs to [ANSWER]
['Q24123675', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?i WHERE { resource:Q24123675 property:P703 ?i . ?i rdf:type ontology:Q631147 }
Bordetella pertussis Tohama I
Hypothetical protein BP2815 belongs to Bordetella pertussis Tohama I
Bordetella pertussis Tohama I
action filter_type
action find
entity hypothetical protein    BP2815
relation found in taxon
type infraspecific name
['hypothetical protein    BP2815', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?i WHERE { resource:hypothetical_protein____BP2815 property:found_in_taxon ?i . ?i rdf:type ontology:infraspecific_name }
[]
Quantitative Reasoning (All)
Quantitative|Min/Max|Mult. entity type
P129
Q181394 Q181394 Q8386
USER
Which nutrients do min number of nutrients and drugs contact with ?
(c(Q181394)|c(Q8386),P129,c(Q181394))
action argmin
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
[[{'concept': 'Q181394'}, {'concept': 'Q8386'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?y WHERE { { SELECT DISTINCT ( MIN ( ?f ) AS ?q ) { SELECT DISTINCT ?c ( COUNT ( ?h ) AS ?f ) WHERE { ?h rdf:type ?x . VALUES ( ?x ) { ( ontology:Q8386 ) ( ontology:Q181394 ) } } GROUP BY ?c } } . { SELECT DISTINCT ?y ( COUNT ( ?m ) AS ?i ) WHERE { { ?m property:P129 ?y . ?m rdf:type ontology:Q181394 . ?y rdf:type ontology:Q181394 } UNION { ?m property:P129 ?y . ?m rdf:type ontology:Q8386 . ?y rdf:type ontology:Q181394 } } GROUP BY ?y } . FILTER ( ?i = ?q ) }
action argmin
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
[[{'concept': 'nutrient'}, {'concept': 'drug'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?y WHERE { { SELECT DISTINCT ( MIN ( ?f ) AS ?q ) { SELECT DISTINCT ?c ( COUNT ( ?h ) AS ?f ) WHERE { ?h rdf:type ?x . VALUES ( ?x ) { ( ontology:drug ) ( ontology:nutrient ) } } GROUP BY ?c } } . { SELECT DISTINCT ?y ( COUNT ( ?m ) AS ?i ) WHERE { { ?m property:physically_interacts_with ?y . ?m rdf:type ontology:nutrient . ?y rdf:type ontology:nutrient } UNION { ?m property:physically_interacts_with ?y . ?m rdf:type ontology:drug . ?y rdf:type ontology:nutrient } } GROUP BY ?y } . FILTER ( ?i = ?q ) }
[]
nutrient nutrient drug
Q425201 Q21113719 Q5514576
SYSTEM
Apoptosis regulator Bcl-2, NAD-dependent protein deacetylase sirtuin-1, Glycogen synthase kinase-3 beta
Q21135479 Q21120657 Q21987720 Q5635781 Q21494718 Q21115219 Q21119830 Q4217286 Q21108693 Q12746346 Q21108695 Q21123087 Q21988043 Q21985448 Q21172741 Q21111688 Q1407929 Q21173169 Q21107052 Q21108135 Q21113310 Q21113312 Q21113313 Q21113314 Q21113317 Q21113170 Q21113172 Q21113176 Q21126314 Q4042017 Q21496155 Q6590338 Q7073181 Q21107107 Q7317662 Q22675842 Q14911986 Q21100441 Q21113552 Q21114547 Q14865158 Q21110488 Q906403 Q21990430 Q21981115 Q420604 Q21135449 Q21108357 Q21126214 Q21156663 Q5500227 Q21118967 Q6589868 Q21108408 Q21118678 Q21984552 Q21123083 Q7923221 Q21106653 Q21118293 Q21130016 Q21111689 Q908221 Q21496578 Q5323823 Q22677568 Q21496575 Q21496576 Q21109253 Q21100773 Q21100774 Q21988044 Q21107535 Q21114341 Q21988816 Q21113326 Q21984063 Q21122125 Q4812911 Q21103089 Q21112081 Q4459747 Q511968 Q21130042 Q21123723 Q5198256 Q21107884 Q15324125 Q7275807 Q2640417 Q21125231 Q21100472 Q21123725 Q21155668 Q1147372 Q5514576 Q21119824 Q21980258 Q21119826 Q2385013 Q5419640 Q21494502 Q21114166 Q7671499 Q21104645 Q408853 Q21130460 Q21097266 Q5512777 Q21118785 Q21154430 Q21173746 Q21496383 Q21113719 Q21139471 Q21113101 Q21113100 Q424031 Q21110304 Q21114338 Q21132140 Q21126773 Q21105660 Q21991514 Q21991512 Q21113155 Q21981993 Q21171763 Q4650061 Q21112691 Q21499097 Q21114807 Q21208052 Q21987569 Q21173156 Q21121807 Q21124061 Q4822491 Q21126205 Q21108578 Q21113173 Q21120142 Q411978 Q21106540 Q21111184 Q4859538 Q21139123 Q21114291 Q14891582 Q21496918 Q21106795 Q21113926 Q21114574 Q21112525 Q21118072 Q7251483 Q21113330 Q5419638 Q21113337 Q21104817 Q14914570 Q21113158 Q21135903 Q21107088 Q21113152 Q21145932 Q21173215 Q21123245 Q5014947 Q21123246 Q5512833 Q5500223 Q21132248 Q21100464 Q15323346 Q21988035 Q21105636 Q21126242 Q5572421 Q21107443 Q21497124 Q21123241 Q6590408 Q21497128 Q21132652 Q6594119 Q21119694 Q21111879 Q21988026 Q21988024 Q7671460 Q7671461 Q21173504 Q7671469 Q12746382 Q21497155 Q7671464 Q21121466 Q21110933 Q6714411 Q7118491 Q13566123 Q21990458 Q21120698 Q21113274 Q7120326 Q21113278 Q21113115 Q6881891 Q7202245 Q2083074 Q21124401 Q4897285 Q21111495 Q21123752 Q21172884 Q21172886 Q21122109 Q6534535 Q21121716 Q21130508 Q21123216 Q22679008 Q21113831 Q4377404 Q4822488 Q21116933 Q5014193 Q21114819 Q288395 Q21120144 Q6714959 Q21119816 Q10988613 Q21123722 Q5014192 Q21108517 Q21154413 Q5611755 Q21111517 Q21988152 Q21982871 Q21113305 Q21119825 Q21113169 Q21113168 Q21113161 Q21172271 Q7455513 Q21119591 Q21114857 Q21100450 Q21100324 Q21132247 Q21106448 Q21987287 Q21118676 Q21118677 Q21108701 Q425201 Q9020944 Q21121379 Q21112289 Q21157860 Q7671478 Q21113099 Q21126947 Q21113295 Q21113297 Q21113292 Q21107799 Q21113349 Q21494464 Q21983336 Q288431 Q21107871 Q6589190 Q21097216 Q21122509 Q21114955 Q5201183 Q415762 Q6714402 Q21135787 Q571999 Q21495791 Q21100886 Q21115429 Q22683566 Q7002508 Q21121490 Q2356259 Q414401 Q21113127 Q21986206
(c(Q181394)|c(Q8386),P129,c(Q181394))
action argmin
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
Min number of nutrients and drugs contact [ANSWERS]
[[{'concept': 'Q181394'}, {'concept': 'Q8386'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?y WHERE { { SELECT DISTINCT ( MIN ( ?f ) AS ?q ) { SELECT DISTINCT ?c ( COUNT ( ?h ) AS ?f ) WHERE { ?h rdf:type ?x . VALUES ( ?x ) { ( ontology:Q8386 ) ( ontology:Q181394 ) } } GROUP BY ?c } } . { SELECT DISTINCT ?y ( COUNT ( ?m ) AS ?i ) WHERE { { ?m property:P129 ?y . ?m rdf:type ontology:Q181394 . ?y rdf:type ontology:Q181394 } UNION { ?m property:P129 ?y . ?m rdf:type ontology:Q8386 . ?y rdf:type ontology:Q181394 } } GROUP BY ?y } . FILTER ( ?i = ?q ) }
Sodium channel protein type 8 subunit alpha Interleukin-23 subunit alpha Mas-related G-protein coupled receptor member D GTPase HRas Lysophosphatidic acid receptor 2 Oxysterols receptor LXR-beta Potassium channel subfamily K member 18 Cathepsin S G-protein coupled receptor 87 Nociceptin receptor G-protein coupled receptor 84 Neuromedin-K receptor Sphingosine 1-phosphate receptor 4 Hydroxycarboxylic acid receptor 1 G-protein coupled receptor 3 B2 bradykinin receptor Cytochrome P450 1A1 Lysophosphatidic acid receptor 3 Gap junction alpha-4 protein Neuronal acetylcholine receptor subunit alpha-10 Gamma-aminobutyric acid receptor subunit rho-1 Gamma-aminobutyric acid receptor subunit beta-3 Gamma-aminobutyric acid receptor subunit rho-2 Gamma-aminobutyric acid receptor subunit beta-2 Gamma-aminobutyric acid receptor subunit epsilon Gap junction delta-3 protein Gap junction delta-4 protein Gap junction delta-2 protein Sodium channel protein type 1 subunit alpha GTPase KRas Bromodomain testis-specific protein Metabotropic glutamate receptor 7 2-oxoglutarate receptor 1 Gap junction alpha-3 protein Nuclear receptor subfamily 1 group D member 2 Rhodopsin kinase Nociceptin receptor Bromodomain-containing protein 4 ATP-sensitive inward rectifier potassium channel 14 Nitric oxide synthase, inducible Potassium voltage-gated channel subfamily KQT member 1 Serine/threonine-protein kinase BRSK2 Protein kinase C zeta type P2Y purinoceptor 14 G-protein coupled receptor 6 Phenylalanine-4-hydroxylase Sodium channel protein type 3 subunit alpha Cystine/glutamate transporter Sphingosine 1-phosphate receptor 1 Mitogen-activated protein kinase 11 Free fatty acid receptor 3 G-protein coupled receptor 183 Metabotropic glutamate receptor 6 H(+)/Cl(-) exchange transporter 3 Melanocortin receptor 3 Potassium voltage-gated channel subfamily A member 3 Substance-K receptor Vesicular acetylcholine transporter Solute carrier family 23 member 1 Hydroxymethylglutaryl-CoA synthase, cytoplasmic Serine/threonine-protein kinase PAK 2 B1 bradykinin receptor Indoleamine 2,3-dioxygenase 1 Lysophosphatidic acid receptor 3 Histone acetyltransferase p300 Corticotropin-releasing factor receptor 1 Lysophosphatidic acid receptor 4 Lysophosphatidic acid receptor 6 Protein kinase C iota type Chloride transport protein 6 H(+)/Cl(-) exchange transporter 7 Sphingosine 1-phosphate receptor 3 Dual specificity mitogen-activated protein kinase kinase 6 Excitatory amino acid transporter 3 Neuropeptide S receptor Gamma-aminobutyric acid receptor subunit gamma-1 G-protein coupled receptor family C group 6 member A Serine palmitoyltransferase 3 Serine/threonine-protein kinase ATR Homeodomain-interacting protein kinase 1 Gap junction gamma-3 protein Toll-like receptor 8 Cyclin-dependent kinase 2 Carbonyl reductase [NADPH] 1 Pannexin-2 Cyclin-dependent kinase 9 Potassium voltage-gated channel subfamily B member 1 Transient receptor potential cation channel subfamily V member 4 Nuclear receptor ROR-alpha Aldehyde dehydrogenase, mitochondrial Solute carrier organic anion transporter family member 1A2 Bromodomain testis-specific protein Pannexin-1 Death-associated protein kinase 1 Cyclin-dependent kinase 1 Glycogen synthase kinase-3 beta G protein-activated inward rectifier potassium channel 2 Short transient receptor potential channel 2 G protein-activated inward rectifier potassium channel 1 Translocator protein Excitatory amino acid transporter 5 G-protein coupled receptor 35 Hepatocyte nuclear factor 4-alpha Transient receptor potential cation channel subfamily V member 3 Dual specificity mitogen-activated protein kinase kinase 4 Nitric oxide synthase, endothelial Methionine aminopeptidase 2 Angiopoietin-1 receptor Gamma-aminobutyric acid receptor subunit alpha-4 Mas-related G-protein coupled receptor member D Lysophosphatidic acid receptor 4 Melanocyte-stimulating hormone receptor Gastrin/cholecystokinin type B receptor NAD-dependent protein deacetylase sirtuin-1 Mitogen-activated protein kinase 10 Gap junction beta-6 protein Gap junction beta-5 protein Mevalonate kinase Galanin receptor type 1 Excitatory amino acid transporter 2 Aurora kinase C Putative P2Y purinoceptor 10 Cyclic nucleotide-gated cation channel alpha-3 Trace amine-associated receptor 3 Trace amine-associated receptor 5 Gap junction gamma-1 protein fMet-Leu-Phe receptor G-protein coupled receptor 12 Bile salt export pump Beta-adrenergic receptor kinase 2 Retinoic acid receptor RXR-alpha Lysine-specific demethylase 7A Sodium/myo-inositol cotransporter ATP-sensitive inward rectifier potassium channel 15 Bcl-2-like protein 1 P2Y purinoceptor 14 Neurotensin receptor type 1 Aurora kinase B Sphingosine 1-phosphate receptor 4 Squalene synthase Gap junction beta-4 protein Neuropeptide Y receptor type 1 Thromboxane A2 receptor Geranylgeranyl pyrophosphate synthase Neuronal acetylcholine receptor subunit alpha-9 Metabotropic glutamate receptor 2 Lysophosphatidic acid receptor 2 Interleukin-17A Transient receptor potential cation channel subfamily V member 6 Lysophosphatidic acid receptor 1 cAMP-specific 3',5'-cyclic phosphodiesterase 4D Cholecystokinin receptor type A Gamma-aminobutyric acid receptor subunit beta-1 Serine/threonine-protein kinase N1 Steroid hormone receptor ERR1 Interferon-induced, double-stranded RNA-activated protein kinase Gamma-aminobutyric acid receptor subunit gamma-3 Excitatory amino acid transporter 4 Gamma-aminobutyric acid receptor subunit theta Receptor tyrosine-protein kinase erbB-4 Transient receptor potential cation channel subfamily M member 6 Gap junction alpha-8 protein Vasoactive intestinal polypeptide receptor 1 Gap junction alpha-10 protein Gap junction alpha-5 protein Phospholipase D2 Serine/threonine-protein kinase 3 High affinity cAMP-specific 3',5'-cyclic phosphodiesterase 7A Cytochrome P450 1B1 Calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1C Cyclin-G-associated kinase Free fatty acid receptor 2 G protein-coupled receptor kinase 6 Bromodomain-containing protein 3 Nuclear receptor subfamily 1 group D member 1 Sphingosine 1-phosphate receptor 5 cGMP-gated cation channel alpha-1 Sphingosine 1-phosphate receptor 5 Excitatory amino acid transporter 1 N-formyl peptide receptor 2 B2 bradykinin receptor Calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1B Metabotropic glutamate receptor 8 B1 bradykinin receptor Glucose-dependent insulinotropic receptor Metabotropic glutamate receptor 3 Calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1A Potassium voltage-gated channel subfamily A member 2 Sphingosine 1-phosphate receptor 2 Sphingosine 1-phosphate receptor 1 Short transient receptor potential channel 1 Short transient receptor potential channel 3 Interstitial collagenase Short transient receptor potential channel 6 Oxoeicosanoid receptor 1 Voltage-dependent L-type calcium channel subunit alpha-1S Short transient receptor potential channel 4 Sphingosine 1-phosphate receptor 2 Probable G-protein coupled receptor 63 Mitogen-activated protein kinase 8 Histone acetyltransferase KAT2B Neuropeptide FF receptor 2 Prostaglandin F2-alpha receptor P2Y purinoceptor 6 Fatty-acid amide hydrolase 1 cAMP-dependent protein kinase catalytic subunit alpha Fatty-acid amide hydrolase 2 Gap junction beta-1 protein Mitogen-activated protein kinase 9 Platelet-activating factor receptor Aquaporin-1 Solute carrier family 15 member 1 Beta-adrenergic receptor kinase 1 Calcium/calmodulin-dependent protein kinase type II subunit beta Serine/threonine-protein kinase pim-2 Lysophosphatidic acid receptor 6 Lysophosphatidic acid receptor 5 Serine palmitoyltransferase 2 Leukotriene B4 receptor 2 Nitric oxide synthase, brain Inhibitor of nuclear factor kappa-B kinase subunit alpha Serine/threonine-protein kinase N2 Cathepsin K Type-2 angiotensin II receptor Presenilin-1 Aurora kinase A Cyclin-dependent-like kinase 5 Casein kinase I isoform delta Lysine-specific demethylase 2A Histamine H3 receptor Neuropeptide Y receptor type 2 Mucolipin-1 Potassium channel subfamily K member 3 Leukotriene B4 receptor 1 Pannexin-3 Casein kinase I isoform epsilon TRAF2 and NCK-interacting protein kinase Cathepsin Z Growth hormone secretagogue receptor type 1 cAMP-dependent protein kinase catalytic subunit beta Serine palmitoyltransferase 1 Glucocorticoid receptor Gamma-aminobutyric acid receptor subunit gamma-2 G protein-activated inward rectifier potassium channel 4 Gap junction beta-7 protein Gap junction gamma-2 protein Gap junction alpha-9 protein Platelet-activating factor acetylhydrolase Serum amyloid P-component Neurotensin receptor type 2 Protein kinase C eta type Bromodomain-containing protein 2 Serine/threonine-protein kinase pim-1 G protein-coupled receptor kinase 4 Aquaporin-9 Neuromedin-K receptor Melanocortin receptor 4 Melanocortin receptor 5 Glutamate receptor ionotropic, kainate 1 Apoptosis regulator Bcl-2 Tyrosine-protein kinase Lck Sodium/myo-inositol cotransporter 2 Oxysterols receptor LXR-alpha Cystathionine gamma-lyase Transient receptor potential cation channel subfamily M member 1 Gap junction beta-3 protein GTPase NRas Gamma-aminobutyric acid receptor subunit pi Gamma-aminobutyric acid receptor subunit delta Gamma-aminobutyric acid receptor subunit rho-3 Inositol 1,4,5-trisphosphate receptor type 2 Metabotropic glutamate receptor 4 12-(S)-hydroxy-5,8,10,14-eicosatetraenoic acid receptor Histamine H3 receptor Metabotropic glutamate receptor 1 Potassium voltage-gated channel subfamily A member 6 Metabotropic glutamate receptor 5 Tyrosine-protein kinase Yes Phosphorylase b kinase gamma catalytic chain, liver/testis isoform 3-phosphoinositide-dependent protein kinase 1 Cystathionine beta-synthase Dopamine beta-hydroxylase Mitogen-activated protein kinase 14 Tubulin beta-3 chain Inhibitor of nuclear factor kappa-B kinase subunit beta Metabotropic glutamate receptor 5 Lanosterol 14-alpha demethylase High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A Histone lysine demethylase PHF8 Neuropeptide FF receptor 1 Sphingosine 1-phosphate receptor 3 Gap junction alpha-1 protein Purine nucleoside phosphorylase Gap junction beta-2 protein Neurotensin receptor type 2
Min number of nutrients and drugs contact Apoptosis regulator Bcl-2, NAD-dependent protein deacetylase sirtuin-1 and Glycogen synthase kinase-3 beta
Apoptosis regulator Bcl-2 NAD-dependent protein deacetylase sirtuin-1 Glycogen synthase kinase-3 beta
action argmin
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
[[{'concept': 'nutrient'}, {'concept': 'drug'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?y WHERE { { SELECT DISTINCT ( MIN ( ?f ) AS ?q ) { SELECT DISTINCT ?c ( COUNT ( ?h ) AS ?f ) WHERE { ?h rdf:type ?x . VALUES ( ?x ) { ( ontology:drug ) ( ontology:nutrient ) } } GROUP BY ?c } } . { SELECT DISTINCT ?y ( COUNT ( ?m ) AS ?i ) WHERE { { ?m property:physically_interacts_with ?y . ?m rdf:type ontology:nutrient . ?y rdf:type ontology:nutrient } UNION { ?m property:physically_interacts_with ?y . ?m rdf:type ontology:drug . ?y rdf:type ontology:nutrient } } GROUP BY ?y } . FILTER ( ?i = ?q ) }
[]
Simple Question (Coreferenced)
Simple Question|Mult. Entity
Q425201 Q21113719 Q5514576
P682
Q1057
USER
What biological processes are those nutrients involved in ?
(Q425201,P682,c(Q1057)) (Q21113719,P682,c(Q1057)) (Q5514576,P682,c(Q1057))
action filter_type
action find
entity prev_answer
relation P682
type Q1057
['Q425201', 'P682', {'concept': 'Q1057'}] ['Q21113719', 'P682', {'concept': 'Q1057'}] ['Q5514576', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?p WHERE { ?z property:P682 ?p . ?p rdf:type ontology:Q1057 . VALUES ( ?z ) { ( resource:Q21135479 ) ( resource:Q21120657 ) ( resource:Q21987720 ) } }
Apoptosis regulator Bcl-2 NAD-dependent protein deacetylase sirtuin-1 Glycogen synthase kinase-3 beta
action filter_type
action find
entity prev_answer
relation biological process
type metabolic process
['Apoptosis regulator Bcl-2', 'biological process', {'concept': 'metabolic process'}] ['NAD-dependent protein deacetylase sirtuin-1', 'biological process', {'concept': 'metabolic process'}] ['Glycogen synthase kinase-3 beta', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?p WHERE { ?z property:biological_process ?p . ?p rdf:type ontology:metabolic_process . VALUES ( ?z ) { ( resource:Sodium_channel_protein_type_8_subunit_alpha ) ( resource:Interleukin-23_subunit_alpha ) ( resource:Mas-related_G-protein_coupled_receptor_member_D ) } }
[]
metabolic process
Q14863432 Q15313450 Q14762260
SYSTEM
reactive oxygen species metabolic process, methylation-dependent chromatin silencing, carbohydrate metabolic process
Q14863432 Q15313450 Q14762260
(Q425201,P682,c(Q1057)) (Q21113719,P682,c(Q1057)) (Q5514576,P682,c(Q1057))
action filter_type
action find
entity prev_answer
relation P682
type Q1057
Those nutrients are in [ANSWERS]
['Q425201', 'P682', {'concept': 'Q1057'}] ['Q21113719', 'P682', {'concept': 'Q1057'}] ['Q5514576', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?p WHERE { ?z property:P682 ?p . ?p rdf:type ontology:Q1057 . VALUES ( ?z ) { ( resource:Q21135479 ) ( resource:Q21120657 ) ( resource:Q21987720 ) } }
reactive oxygen species metabolic process methylation-dependent chromatin silencing carbohydrate metabolic process
Those nutrients are in reactive oxygen species metabolic process, methylation-dependent chromatin silencing and carbohydrate metabolic process
reactive oxygen species metabolic process methylation-dependent chromatin silencing carbohydrate metabolic process
action filter_type
action find
entity prev_answer
relation biological process
type metabolic process
['Apoptosis regulator Bcl-2', 'biological process', {'concept': 'metabolic process'}] ['NAD-dependent protein deacetylase sirtuin-1', 'biological process', {'concept': 'metabolic process'}] ['Glycogen synthase kinase-3 beta', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?p WHERE { ?z property:biological_process ?p . ?p rdf:type ontology:metabolic_process . VALUES ( ?z ) { ( resource:Sodium_channel_protein_type_8_subunit_alpha ) ( resource:Interleukin-23_subunit_alpha ) ( resource:Mas-related_G-protein_coupled_receptor_member_D ) } }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q425201
P681
Q15989253
USER
Which are the cell components of Apoptosis regulator Bcl-2 ?
(Q14863432,P681,c(Q15989253)) (Q15313450,P681,c(Q15989253)) (Q14762260,P681,c(Q15989253))
action filter_type
action find
entity Q425201
relation P681
type Q15989253
['Q14863432', 'P681', {'concept': 'Q15989253'}] ['Q15313450', 'P681', {'concept': 'Q15989253'}] ['Q14762260', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?z WHERE { ?z rdf:type ontology:Q15989253 . resource:Q425201 property:P681 ?z }
Apoptosis regulator Bcl-2
action filter_type
action find
entity Apoptosis regulator Bcl-2
relation cell component
type part
['reactive oxygen species metabolic process', 'cell component', {'concept': 'part'}] ['methylation-dependent chromatin silencing', 'cell component', {'concept': 'part'}] ['carbohydrate metabolic process', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?z WHERE { ?z rdf:type ontology:part . resource:Apoptosis_regulator_Bcl-2 property:cell_component ?z }
[]
part
Q39572 Q79899 Q40260
SYSTEM
mitochondrion, cytoplasm, nucleus
Q79899 Q39572 Q40260 Q14349455
(Q14863432,P681,c(Q15989253)) (Q15313450,P681,c(Q15989253)) (Q14762260,P681,c(Q15989253))
action filter_type
action find
entity Q425201
relation P681
type Q15989253
The cell components of Apoptosis regulator Bcl-2 are in [ANSWERS]
['Q14863432', 'P681', {'concept': 'Q15989253'}] ['Q15313450', 'P681', {'concept': 'Q15989253'}] ['Q14762260', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?z WHERE { ?z rdf:type ontology:Q15989253 . resource:Q425201 property:P681 ?z }
cytoplasm mitochondrion nucleus membrane
The cell components of Apoptosis regulator Bcl-2 are in mitochondrion, cytoplasm and nucleus
mitochondrion cytoplasm nucleus
action filter_type
action find
entity Apoptosis regulator Bcl-2
relation cell component
type part
['reactive oxygen species metabolic process', 'cell component', {'concept': 'part'}] ['methylation-dependent chromatin silencing', 'cell component', {'concept': 'part'}] ['carbohydrate metabolic process', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?z WHERE { ?z rdf:type ontology:part . resource:Apoptosis_regulator_Bcl-2 property:cell_component ?z }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q425201
P702
Q863908
USER
What encodes Apoptosis regulator Bcl-2 ?
(Q425201,P702,c(Q863908))
action filter_type
action find
entity Q425201
relation P702
type Q863908
['Q425201', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?g WHERE { resource:Q425201 property:P702 ?g . ?g rdf:type ontology:Q863908 }
Apoptosis regulator Bcl-2
action filter_type
action find
entity Apoptosis regulator Bcl-2
relation encoded by
type nucleic acid sequence
['Apoptosis regulator Bcl-2', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?g WHERE { resource:Apoptosis_regulator_Bcl-2 property:encoded_by ?g . ?g rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q14863436
SYSTEM
BCL2
Q14863436
(Q425201,P702,c(Q863908))
action filter_type
action find
entity Q425201
relation P702
type Q863908
[ANSWER] encodes Apoptosis regulator Bcl-2
['Q425201', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?g WHERE { resource:Q425201 property:P702 ?g . ?g rdf:type ontology:Q863908 }
BCL2
BCL2 encodes Apoptosis regulator Bcl-2
BCL2
action filter_type
action find
entity Apoptosis regulator Bcl-2
relation encoded by
type nucleic acid sequence
['Apoptosis regulator Bcl-2', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?g WHERE { resource:Apoptosis_regulator_Bcl-2 property:encoded_by ?g . ?g rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q14863436
P688
Q181394
USER
What does that nucleic acid sequence encode ?
(Q14863436,P688,c(Q181394))
action filter_type
action find
entity Q14863436
relation P688
type Q181394
['Q14863436', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?p WHERE { resource:Q14863436 property:P688 ?p . ?p rdf:type ontology:Q181394 }
BCL2
action filter_type
action find
entity BCL2
relation encodes
type nutrient
['BCL2', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?p WHERE { resource:BCL2 property:encodes ?p . ?p rdf:type ontology:nutrient }
[]
nutrient
Q425201
SYSTEM
Apoptosis regulator Bcl-2
Q425201
(Q14863436,P688,c(Q181394))
action filter_type
action find
entity Q14863436
relation P688
type Q181394
That nucleic acid sequence encodes [ANSWER]
['Q14863436', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?p WHERE { resource:Q14863436 property:P688 ?p . ?p rdf:type ontology:Q181394 }
Apoptosis regulator Bcl-2
That nucleic acid sequence encodes Apoptosis regulator Bcl-2
Apoptosis regulator Bcl-2
action filter_type
action find
entity BCL2
relation encodes
type nutrient
['BCL2', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?p WHERE { resource:BCL2 property:encodes ?p . ?p rdf:type ontology:nutrient }
[]
Verification (Boolean) (All)
Verification|3 entities, 2 direct, 2(direct) are query entities, subject is indirect
Q425201 Q14863372 Q14349538
P681
Q5058355
USER
Is myelin sheath and apical part of cell a cell component of Q425201 ?
(Q425201,P681,Q14863372) (Q425201,P681,Q14349538)
action is_in
entity Q425201
action intersection
action find_reverse
entity Q14863372
relation P681
action find_reverse
entity Q14349538
relation P681
['Q425201', 'P681', 'Q14863372'] ['Q425201', 'P681', 'Q14349538']
ASK WHERE { resource:Q425201 property:P681 resource:Q14863372 . resource:Q425201 property:P681 resource:Q14349538 }
Apoptosis regulator Bcl-2 myelin sheath apical part of cell
action is_in
entity Apoptosis regulator Bcl-2
action intersection
action find_reverse
entity myelin sheath
relation cell component
action find_reverse
entity apical part of cell
relation cell component
['Apoptosis regulator Bcl-2', 'cell component', 'myelin sheath'] ['Apoptosis regulator Bcl-2', 'cell component', 'apical part of cell']
ASK WHERE { resource:Apoptosis_regulator_Bcl-2 property:cell_component resource:myelin_sheath . resource:Apoptosis_regulator_Bcl-2 property:cell_component resource:apical_part_of_cell }
[]
cellular component
SYSTEM
YES and NO respectively
(Q425201,P681,Q14863372) (Q425201,P681,Q14349538)
action is_in
entity Q425201
action intersection
action find_reverse
entity Q14863372
relation P681
action find_reverse
entity Q14349538
relation P681
[ANSWER]
['Q425201', 'P681', 'Q14863372'] ['Q425201', 'P681', 'Q14349538']
ASK WHERE { resource:Q425201 property:P681 resource:Q14863372 . resource:Q425201 property:P681 resource:Q14349538 }
YES and NO respectively
action is_in
entity Apoptosis regulator Bcl-2
action intersection
action find_reverse
entity myelin sheath
relation cell component
action find_reverse
entity apical part of cell
relation cell component
['Apoptosis regulator Bcl-2', 'cell component', 'myelin sheath'] ['Apoptosis regulator Bcl-2', 'cell component', 'apical part of cell']
ASK WHERE { resource:Apoptosis_regulator_Bcl-2 property:cell_component resource:myelin_sheath . resource:Apoptosis_regulator_Bcl-2 property:cell_component resource:apical_part_of_cell }
[]
Comparative Reasoning (All)
Comparative|More/Less|Single entity type
Q898365
P682
Q1057 Q181394
USER
Which metabolic processes are more number of nutrients involved in than glycosylation ?
(c(Q181394),P682,c(Q1057))
action greater
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
action count
action filter_type
action find
entity Q898365
relation P682
type Q1057
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?l WHERE { { SELECT DISTINCT ?l ( COUNT ( ?e ) AS ?u ) WHERE { ?e property:P682 ?l . ?e rdf:type ontology:Q181394 . ?l rdf:type ontology:Q1057 } GROUP BY ?l } . { SELECT DISTINCT ( COUNT ( ?r ) AS ?i ) WHERE { resource:Q898365 property:P682 ?r . ?r rdf:type ontology:Q1057 } } . FILTER ( ?u > ?i ) }
glycosylation
action greater
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
action count
action filter_type
action find
entity glycosylation
relation biological process
type metabolic process
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?l WHERE { { SELECT DISTINCT ?l ( COUNT ( ?e ) AS ?u ) WHERE { ?e property:biological_process ?l . ?e rdf:type ontology:nutrient . ?l rdf:type ontology:metabolic_process } GROUP BY ?l } . { SELECT DISTINCT ( COUNT ( ?r ) AS ?i ) WHERE { resource:glycosylation property:biological_process ?r . ?r rdf:type ontology:metabolic_process } } . FILTER ( ?u > ?i ) }
[]
metabolic process nutrient
Q22251129 Q14905693 Q133895
SYSTEM
proteolysis in other organism, translational initiation, tricarboxylic acid cycle
Q14864889 Q22274727 Q22251129 Q14905693 Q14860777 Q21097138 Q14819379 Q21759902 Q133895 Q21157940 Q14863351 Q21102358 Q14880758 Q21761098 Q14762260 Q21100626 Q14916189 Q14349667 Q14349764 Q21159531 Q22274640 Q14905125 Q21096256 Q14863432 Q14909347 Q15313450 Q179924 Q21101220 Q21095286 Q14358591 Q838181 Q14859896 Q21103172 Q22276072 Q14897831 Q14645736 Q14864262 Q14859628 Q14819787 Q14819781 Q22279537 Q22283508 Q14327719 Q21124620 Q14860507 Q14890104 Q14864417 Q14864414 Q900386 Q14912265 Q21760838
(c(Q181394),P682,c(Q1057))
action greater
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
action count
action filter_type
action find
entity Q898365
relation P682
type Q1057
[ANSWERS]
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?l WHERE { { SELECT DISTINCT ?l ( COUNT ( ?e ) AS ?u ) WHERE { ?e property:P682 ?l . ?e rdf:type ontology:Q181394 . ?l rdf:type ontology:Q1057 } GROUP BY ?l } . { SELECT DISTINCT ( COUNT ( ?r ) AS ?i ) WHERE { resource:Q898365 property:P682 ?r . ?r rdf:type ontology:Q1057 } } . FILTER ( ?u > ?i ) }
cellular aromatic compound metabolic process secondary metabolic process proteolysis in other organism translational initiation hormone biosynthetic process cellular aldehyde metabolic process one-carbon metabolic process carbon fixation tricarboxylic acid cycle nitrobenzene metabolic process signal transduction by protein phosphorylation sulfur compound metabolic process nucleobase-containing compound metabolic process photosynthesis carbohydrate metabolic process peptidyl-lysine modification to peptidyl-hypusine organic acid metabolic process lipid metabolic process oxidation-reduction process selenium compound metabolic process cellular biosynthetic process neurotransmitter metabolic process cellular carbohydrate metabolic process reactive oxygen species metabolic process flavonoid metabolic process methylation-dependent chromatin silencing bioluminescence wax biosynthetic process amyloid fibril formation xenobiotic metabolic process respiratory burst cellular amino acid metabolic process DNA protection glycosyl compound metabolic process isotype switching thyroid hormone metabolic process protein metabolic process cellular lipid metabolic process peptide hormone processing generation of precursor metabolites and energy viral RNA genome replication IRES-dependent viral translational initiation small molecule metabolic process transposition, DNA-mediated receptor internalization toxin metabolic process heterocycle metabolic process drug metabolic process demethylation cellular ketone metabolic process phosphorus metabolic process
Which metabolic processes are more number of nutrients involved in than glycosylation
proteolysis in other organism translational initiation tricarboxylic acid cycle
action greater
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
action count
action filter_type
action find
entity glycosylation
relation biological process
type metabolic process
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?l WHERE { { SELECT DISTINCT ?l ( COUNT ( ?e ) AS ?u ) WHERE { ?e property:biological_process ?l . ?e rdf:type ontology:nutrient . ?l rdf:type ontology:metabolic_process } GROUP BY ?l } . { SELECT DISTINCT ( COUNT ( ?r ) AS ?i ) WHERE { resource:glycosylation property:biological_process ?r . ?r rdf:type ontology:metabolic_process } } . FILTER ( ?u > ?i ) }
[]
Comparative Reasoning (All)
Comparative|More/Less|Single entity type|Incomplete
Q21124620
P682
Q1057 Q181394
USER
And what about transposition, DNA-mediated?
(c(Q181394),P682,c(Q1057))
action greater
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
action count
action filter_type
action find
entity Q21124620
relation P682
type Q1057
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?v WHERE { { SELECT DISTINCT ?v ( COUNT ( ?a ) AS ?c ) WHERE { ?v rdf:type ontology:Q1057 . ?a rdf:type ontology:Q181394 . ?a property:P682 ?v } GROUP BY ?v } . { SELECT DISTINCT ( COUNT ( ?s ) AS ?w ) WHERE { resource:Q21124620 property:P682 ?s . ?s rdf:type ontology:Q1057 } } . FILTER ( ?c > ?w ) }
transposition, DNA-mediated
action greater
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
action count
action filter_type
action find
entity transposition, DNA-mediated
relation biological process
type metabolic process
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?v WHERE { { SELECT DISTINCT ?v ( COUNT ( ?a ) AS ?c ) WHERE { ?v rdf:type ontology:metabolic_process . ?a rdf:type ontology:nutrient . ?a property:biological_process ?v } GROUP BY ?v } . { SELECT DISTINCT ( COUNT ( ?s ) AS ?w ) WHERE { resource:transposition,_DNA-mediated property:biological_process ?s . ?s rdf:type ontology:metabolic_process } } . FILTER ( ?c > ?w ) }
[]
metabolic process nutrient
Q14762260 Q14863351 Q14349667
SYSTEM
carbohydrate metabolic process, signal transduction by protein phosphorylation, lipid metabolic process
Q14863351 Q14762260 Q14349667 Q14349764
(c(Q181394),P682,c(Q1057))
action greater
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
action count
action filter_type
action find
entity Q21124620
relation P682
type Q1057
[ANSWERS]
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?v WHERE { { SELECT DISTINCT ?v ( COUNT ( ?a ) AS ?c ) WHERE { ?v rdf:type ontology:Q1057 . ?a rdf:type ontology:Q181394 . ?a property:P682 ?v } GROUP BY ?v } . { SELECT DISTINCT ( COUNT ( ?s ) AS ?w ) WHERE { resource:Q21124620 property:P682 ?s . ?s rdf:type ontology:Q1057 } } . FILTER ( ?c > ?w ) }
signal transduction by protein phosphorylation carbohydrate metabolic process lipid metabolic process oxidation-reduction process
carbohydrate metabolic process signal transduction by protein phosphorylation lipid metabolic process
action greater
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
action count
action filter_type
action find
entity transposition, DNA-mediated
relation biological process
type metabolic process
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?v WHERE { { SELECT DISTINCT ?v ( COUNT ( ?a ) AS ?c ) WHERE { ?v rdf:type ontology:metabolic_process . ?a rdf:type ontology:nutrient . ?a property:biological_process ?v } GROUP BY ?v } . { SELECT DISTINCT ( COUNT ( ?s ) AS ?w ) WHERE { resource:transposition,_DNA-mediated property:biological_process ?s . ?s rdf:type ontology:metabolic_process } } . FILTER ( ?c > ?w ) }
[]