Simple Question (Direct)
Simple Question
Q23424493
P702
Q863908
USER
Which gene encodes ferrioxamine receptor    YE0323 ?
(Q23424493,P702,c(Q863908))
action filter_type
action find
entity Q23424493
relation P702
type Q863908
['Q23424493', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?m WHERE { resource:Q23424493 property:P702 ?m . ?m rdf:type ontology:Q863908 }
ferrioxamine receptor    YE0323
action filter_type
action find
entity ferrioxamine receptor    YE0323
relation encoded by
type nucleic acid sequence
['ferrioxamine receptor    YE0323', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?m WHERE { resource:ferrioxamine_receptor____YE0323 property:encoded_by ?m . ?m rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23098065
SYSTEM
ferrioxamine receptor    YE0323
Q23098065
(Q23424493,P702,c(Q863908))
action filter_type
action find
entity Q23424493
relation P702
type Q863908
Ferrioxamine receptor YE0323 encodes ferrioxamine receptor YE0323
['Q23424493', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?m WHERE { resource:Q23424493 property:P702 ?m . ?m rdf:type ontology:Q863908 }
ferrioxamine receptor    YE0323
Ferrioxamine receptor YE0323 encodes ferrioxamine receptor YE0323
ferrioxamine receptor    YE0323
action filter_type
action find
entity ferrioxamine receptor    YE0323
relation encoded by
type nucleic acid sequence
['ferrioxamine receptor    YE0323', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?m WHERE { resource:ferrioxamine_receptor____YE0323 property:encoded_by ?m . ?m rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23424493
P703
Q631147
USER
Where is ferrioxamine receptor    YE0323 found ?
(Q23424493,P703,c(Q631147))
action filter_type
action find
entity Q23424493
relation P703
type Q631147
['Q23424493', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?b WHERE { resource:Q23424493 property:P703 ?b . ?b rdf:type ontology:Q631147 }
ferrioxamine receptor    YE0323
action filter_type
action find
entity ferrioxamine receptor    YE0323
relation found in taxon
type infraspecific name
['ferrioxamine receptor    YE0323', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?b WHERE { resource:ferrioxamine_receptor____YE0323 property:found_in_taxon ?b . ?b rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102942
SYSTEM
Yersinia enterocolitica subsp. enterocolitica 8081
Q21102942
(Q23424493,P703,c(Q631147))
action filter_type
action find
entity Q23424493
relation P703
type Q631147
Ferrioxamine receptor YE0323 is found in [ANSWER]
['Q23424493', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?b WHERE { resource:Q23424493 property:P703 ?b . ?b rdf:type ontology:Q631147 }
Yersinia enterocolitica subsp. enterocolitica 8081
Ferrioxamine receptor YE0323 is found in Yersinia enterocolitica subsp. enterocolitica 8081
Yersinia enterocolitica subsp. enterocolitica 8081
action filter_type
action find
entity ferrioxamine receptor    YE0323
relation found in taxon
type infraspecific name
['ferrioxamine receptor    YE0323', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?b WHERE { resource:ferrioxamine_receptor____YE0323 property:found_in_taxon ?b . ?b rdf:type ontology:infraspecific_name }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q23133079
Q631147
USER
And also tell me about DNA-binding transcriptional dual regulator    KPHS_00810?
(Q23133079,P703,c(Q631147))
action filter_type
action find
entity Q23133079
relation P703
type Q631147
['Q23133079', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?k WHERE { resource:Q23133079 property:P703 ?k . ?k rdf:type ontology:Q631147 }
DNA-binding transcriptional dual regulator    KPHS_00810
action filter_type
action find
entity DNA-binding transcriptional dual regulator    KPHS_00810
relation found in taxon
type infraspecific name
['DNA-binding transcriptional dual regulator    KPHS_00810', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?k WHERE { resource:DNA-binding_transcriptional_dual_regulator____KPHS_00810 property:found_in_taxon ?k . ?k rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102939
SYSTEM
Klebsiella pneumoniae subsp. pneumoniae HS11286
Q21102939
(Q23133079,P703,c(Q631147))
action filter_type
action find
entity Q23133079
relation P703
type Q631147
[ANSWER]
['Q23133079', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?k WHERE { resource:Q23133079 property:P703 ?k . ?k rdf:type ontology:Q631147 }
Klebsiella pneumoniae subsp. pneumoniae HS11286
Klebsiella pneumoniae subsp. pneumoniae HS11286
action filter_type
action find
entity DNA-binding transcriptional dual regulator    KPHS_00810
relation found in taxon
type infraspecific name
['DNA-binding transcriptional dual regulator    KPHS_00810', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?k WHERE { resource:DNA-binding_transcriptional_dual_regulator____KPHS_00810 property:found_in_taxon ?k . ?k rdf:type ontology:infraspecific_name }
[]
Comparative Reasoning (All)
Comparative|More/Less|Single entity type|Indirect
P703
Q631147 Q863908
USER
Which infraspecific names are less number of nucleic acid sequences found in than that infraspecific name ?
(c(Q863908),P703,c(Q631147))
action less
action find_reverse_tuple_counts
relation P703
type Q631147
type Q863908
action count
action filter_type
action find_reverse
entity Q21102939
relation P703
type Q863908
[{'concept': 'Q863908'}, 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?c WHERE { { SELECT DISTINCT ?c ( COUNT ( ?m ) AS ?q ) WHERE { ?m property:P703 ?c . ?c rdf:type ontology:Q631147 . ?m rdf:type ontology:Q863908 } GROUP BY ?c } . { SELECT DISTINCT ( COUNT ( ?z ) AS ?n ) WHERE { ?z rdf:type ontology:Q863908 . ?z property:P703 resource:Q21102939 } } . FILTER ( ?q < ?n ) }
action less
action find_reverse_tuple_counts
relation found in taxon
type infraspecific name
type nucleic acid sequence
action count
action filter_type
action find_reverse
entity Klebsiella pneumoniae subsp. pneumoniae HS11286
relation found in taxon
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?c WHERE { { SELECT DISTINCT ?c ( COUNT ( ?m ) AS ?q ) WHERE { ?m property:found_in_taxon ?c . ?c rdf:type ontology:infraspecific_name . ?m rdf:type ontology:nucleic_acid_sequence } GROUP BY ?c } . { SELECT DISTINCT ( COUNT ( ?z ) AS ?n ) WHERE { ?z rdf:type ontology:nucleic_acid_sequence . ?z property:found_in_taxon resource:Klebsiella_pneumoniae_subsp._pneumoniae_HS11286 } } . FILTER ( ?q < ?n ) }
[]
infraspecific name nucleic acid sequence
Q21102919 Q21079559 Q21102990
SYSTEM
Legionella pneumophila subsp. pneumophila str. Philadelphia 1, Salinibacter ruber DSM 13855, Mycoplasma pneumoniae M129
Q21102990 Q21102991 Q21102992 Q21102993 Q21102994 Q21102995 Q21102996 Q21102997 Q21102999 Q21102960 Q21065229 Q21079489 Q21102919 Q21102943 Q21102942 Q21102941 Q21102940 Q21102947 Q21102946 Q21102920 Q21102965 Q21102964 Q21102949 Q21102966 Q21102961 Q21102930 Q21102963 Q21102962 Q21102921 Q21102987 Q21102922 Q21102925 Q21102924 Q21102927 Q21102928 Q21102974 Q21102989 Q21079490 Q21079491 Q21102985 Q21102984 Q21102983 Q21102982 Q21102981 Q21102980 Q21102973 Q21102969 Q21102944 Q21102968 Q21102954 Q21102955 Q21102956 Q21102957 Q21102950 Q21102951 Q21102978 Q21102953 Q21102976 Q21102977 Q21102975 Q21102972 Q21102959 Q21102970 Q21102971 Q21064863 Q21064832 Q21102931 Q21102948 Q21102937 Q21102934 Q21102979 Q21079559 Q21102938 Q21102967
(c(Q863908),P703,c(Q631147))
action less
action find_reverse_tuple_counts
relation P703
type Q631147
type Q863908
action count
action filter_type
action find_reverse
entity Q21102939
relation P703
type Q863908
[ANSWERS] are less number of nucleic acid sequences found in than that infraspecific name
[{'concept': 'Q863908'}, 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?c WHERE { { SELECT DISTINCT ?c ( COUNT ( ?m ) AS ?q ) WHERE { ?m property:P703 ?c . ?c rdf:type ontology:Q631147 . ?m rdf:type ontology:Q863908 } GROUP BY ?c } . { SELECT DISTINCT ( COUNT ( ?z ) AS ?n ) WHERE { ?z rdf:type ontology:Q863908 . ?z property:P703 resource:Q21102939 } } . FILTER ( ?q < ?n ) }
Mycoplasma pneumoniae M129 Thermotoga maritima MSB8 Gardnerella vaginalis ATCC 14019 Burkholderia mallei ATCC 23344 Streptococcus mitis B6 Burkholderia pseudomallei K96243 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Salmonella enterica subsp. enterica serovar Typhi str. CT18 Geobacter sulfurreducens PCA Streptococcus suis BM407 Leptospira interrogans serovar Lai str. 56601 Pseudomonas putida KT2440 Legionella pneumophila subsp. pneumophila str. Philadelphia 1 Yersinia pestis CO92 Yersinia enterocolitica subsp. enterocolitica 8081 Shigella flexneri 2a str. 301 Shigella dysenteriae Sd197 Vibrio parahaemolyticus RIMD 2210633 Vibrio fischeri ES114 Acinetobacter pittii PHEA-2 Enterococcus faecalis V583 Streptococcus pyogenes M1 GAS Rickettsia prowazekii str. Madrid E Enterococcus faecium DO Streptococcus mutans UA159 Escherichia coli O157:H7 str. Sakai Streptococcus pneumoniae R6 Streptococcus agalactiae 2603V/R Neisseria gonorrhoeae FA 1090 Mycobacterium tuberculosis H37Rv Neisseria meningitidis MC58 Bordetella pertussis Tohama I Bordetella bronchiseptica 253 Enterobacter aerogenes KCTC 2190 Enterobacter cloacae subsp. cloacae ATCC 13047 Clostridium botulinum A str. Hall Mycoplasma mycoides subsp. mycoides SC str. PG1 Pseudomonas syringae pv. syringae B728a Xanthomonas campestris pv. campestris str. ATCC 33913 Mycobacterium leprae TN Mycobacterium bovis AF2122/97 Corynebacterium glutamicum ATCC 13032 Bifidobacterium bifidum PRL2010 Listeria monocytogenes EGD-e Lactobacillus salivarius UCC118 Clostridium acetobutylicum ATCC 824 Bacillus anthracis str. Sterne Aeromonas hydrophila subsp. hydrophila ATCC 7966 Bacillus anthracis str. Ames Rhodospirillum rubrum ATCC 11170 Chloroflexus aurantiacus J-10-fl Staphylococcus aureus subsp. aureus NCTC 8325 Staphylococcus epidermidis ATCC 12228 Bacteroides fragilis YCH46 Fusobacterium nucleatum subsp. nucleatum ATCC 25586 Lactobacillus casei ATCC 334 Rhodobacter sphaeroides 2.4.1 Peptoclostridium difficile 630 Lactobacillus acidophilus NCFM Clostridium botulinum A str. ATCC 3502 Bacillus thuringiensis serovar konkukian str. 97-27 Deinococcus radiodurans R1 Bacillus cereus ATCC 14579 Bacillus subtilis subsp. subtilis str. 168 Bordetella parapertussis Bpp5 Coxiella burnetii RSA 493 Escherichia coli UMN026 Haemophilus influenzae Rd KW20 Escherichia coli O104:H4 str. 2011C-3493 Escherichia coli O83:H1 str. NRG 857C Lactobacillus plantarum WCFS1 Salinibacter ruber DSM 13855 Escherichia coli str. K-12 substr. MG1655 Lactococcus lactis subsp. lactis Il1403
Legionella pneumophila subsp. pneumophila str. Philadelphia 1, Salinibacter ruber DSM 13855 and Mycoplasma pneumoniae M129 are less number of nucleic acid sequences found in than that infraspecific name
Legionella pneumophila subsp. pneumophila str. Philadelphia 1 Salinibacter ruber DSM 13855 Mycoplasma pneumoniae M129
action less
action find_reverse_tuple_counts
relation found in taxon
type infraspecific name
type nucleic acid sequence
action count
action filter_type
action find_reverse
entity Klebsiella pneumoniae subsp. pneumoniae HS11286
relation found in taxon
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?c WHERE { { SELECT DISTINCT ?c ( COUNT ( ?m ) AS ?q ) WHERE { ?m property:found_in_taxon ?c . ?c rdf:type ontology:infraspecific_name . ?m rdf:type ontology:nucleic_acid_sequence } GROUP BY ?c } . { SELECT DISTINCT ( COUNT ( ?z ) AS ?n ) WHERE { ?z rdf:type ontology:nucleic_acid_sequence . ?z property:found_in_taxon resource:Klebsiella_pneumoniae_subsp._pneumoniae_HS11286 } } . FILTER ( ?q < ?n ) }
[]
Clarification
Simple Question|Single Entity|Indirect
Q21079559
P276
Q5962346
USER
Where can that infraspecific name be found ?
(Q21079559,P276,c(Q5962346))
action filter_type
action find
entity Q21079559
relation P276
type Q5962346
['Q21079559', 'P276', {'concept': 'Q5962346'}]
SELECT DISTINCT ?n WHERE { resource:Q21079559 property:P276 ?n . ?n rdf:type ontology:Q5962346 }
Salinibacter ruber DSM 13855
action filter_type
action find
entity Salinibacter ruber DSM 13855
relation location
type classification scheme
['Salinibacter ruber DSM 13855', 'location', {'concept': 'classification scheme'}]
SELECT DISTINCT ?n WHERE { resource:Salinibacter_ruber_DSM_13855 property:location ?n . ?n rdf:type ontology:classification_scheme }
[]
classification scheme
Clarification for simple ques.
Q21102919
SYSTEM
Did you mean Legionella pneumophila subsp. pneumophila str. Philadelphia 1 ?
Q21102919 Q21079559 Q21102990
(Q21102919,P276,c(Q5962346)) (Q21079559,P276,c(Q5962346)) (Q21102990,P276,c(Q5962346))
[ANSWER]
['Q21102919', 'P276', {'concept': 'Q5962346'}] ['Q21079559', 'P276', {'concept': 'Q5962346'}] ['Q21102990', 'P276', {'concept': 'Q5962346'}]
SELECT DISTINCT ?n WHERE { resource:Q21079559 property:P276 ?n . ?n rdf:type ontology:Q5962346 }
Legionella pneumophila subsp. pneumophila str. Philadelphia 1 Salinibacter ruber DSM 13855 Mycoplasma pneumoniae M129
Did you mean Legionella pneumophila subsp. pneumophila str. Philadelphia 1 ?
Legionella pneumophila subsp. pneumophila str. Philadelphia 1
['Legionella pneumophila subsp. pneumophila str. Philadelphia 1', 'location', {'concept': 'classification scheme'}] ['Salinibacter ruber DSM 13855', 'location', {'concept': 'classification scheme'}] ['Mycoplasma pneumoniae M129', 'location', {'concept': 'classification scheme'}]
SELECT DISTINCT ?n WHERE { resource:Salinibacter_ruber_DSM_13855 property:location ?n . ?n rdf:type ontology:classification_scheme }
[]
Simple Question (Coreferenced)
USER
No, I meant Salinibacter ruber DSM 13855. Could you tell me the answer for that?
(Q21079559,P276,c(Q5962346))
Q21079559
['Q21079559', 'P276', {'concept': 'Q5962346'}]
['Salinibacter ruber DSM 13855', 'location', {'concept': 'classification scheme'}]
[]
Q3253281
SYSTEM
pond
Q3253281
(Q21079559,P276,c(Q5962346))
action filter_type
action find
entity Q21079559
relation P276
type Q5962346
That infraspecific name can be found in [ANSWER]
['Q21079559', 'P276', {'concept': 'Q5962346'}]
SELECT DISTINCT ?n WHERE { resource:Q21079559 property:P276 ?n . ?n rdf:type ontology:Q5962346 }
pond
That infraspecific name can be found in pond
pond
action filter_type
action find
entity Salinibacter ruber DSM 13855
relation location
type classification scheme
['Salinibacter ruber DSM 13855', 'location', {'concept': 'classification scheme'}]
SELECT DISTINCT ?n WHERE { resource:Salinibacter_ruber_DSM_13855 property:location ?n . ?n rdf:type ontology:classification_scheme }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q3253281 Q22915361
P180
Q3305213
USER
Does Salt Marsh by the Sea express that classification scheme ?
(Q22915361,P180,Q3253281)
action is_in
entity Q3253281
action find
entity Q22915361
relation P180
['Q22915361', 'P180', 'Q3253281']
ASK WHERE { resource:Q22915361 property:P180 resource:Q3253281 }
pond Salt Marsh by the Sea
action is_in
entity pond
action find
entity Salt Marsh by the Sea
relation depicts
['Salt Marsh by the Sea', 'depicts', 'pond']
ASK WHERE { resource:Salt_Marsh_by_the_Sea property:depicts resource:pond }
[]
painting
SYSTEM
YES
(Q22915361,P180,Q3253281)
action is_in
entity Q3253281
action find
entity Q22915361
relation P180
[ANSWER]
['Q22915361', 'P180', 'Q3253281']
ASK WHERE { resource:Q22915361 property:P180 resource:Q3253281 }
Yes
action is_in
entity pond
action find
entity Salt Marsh by the Sea
relation depicts
['Salt Marsh by the Sea', 'depicts', 'pond']
ASK WHERE { resource:Salt_Marsh_by_the_Sea property:depicts resource:pond }
[]
Verification (Boolean) (All)
Verification|3 entities, all direct, 2 are query entities
Q21102919 Q18967088 Q3073142
P1542
Q2057971
USER
Was Legionella pneumophila subsp. pneumophila str. Philadelphia 1 the cause of calcium deposits in tendon and bursa and Pontiac fever ?
(Q21102919,P1542,Q18967088) (Q21102919,P1542,Q3073142)
action is_in
entity Q21102919
action intersection
action find_reverse
entity Q18967088
relation P1542
action find_reverse
entity Q3073142
relation P1542
['Q21102919', 'P1542', 'Q18967088'] ['Q21102919', 'P1542', 'Q3073142']
ASK WHERE { resource:Q21102919 property:P1542 resource:Q3073142 . resource:Q21102919 property:P1542 resource:Q18967088 }
Legionella pneumophila subsp. pneumophila str. Philadelphia 1 calcium deposits in tendon and bursa Pontiac fever
action is_in
entity Legionella pneumophila subsp. pneumophila str. Philadelphia 1
action intersection
action find_reverse
entity calcium deposits in tendon and bursa
relation cause of
action find_reverse
entity Pontiac fever
relation cause of
['Legionella pneumophila subsp. pneumophila str. Philadelphia 1', 'cause of', 'calcium deposits in tendon and bursa'] ['Legionella pneumophila subsp. pneumophila str. Philadelphia 1', 'cause of', 'Pontiac fever']
ASK WHERE { resource:Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1 property:cause_of resource:Pontiac_fever . resource:Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1 property:cause_of resource:calcium_deposits_in_tendon_and_bursa }
[]
health problem
SYSTEM
NO and YES respectively
(Q21102919,P1542,Q18967088) (Q21102919,P1542,Q3073142)
action is_in
entity Q21102919
action intersection
action find_reverse
entity Q18967088
relation P1542
action find_reverse
entity Q3073142
relation P1542
[ANSWER]
['Q21102919', 'P1542', 'Q18967088'] ['Q21102919', 'P1542', 'Q3073142']
ASK WHERE { resource:Q21102919 property:P1542 resource:Q3073142 . resource:Q21102919 property:P1542 resource:Q18967088 }
NO and YES respectively
action is_in
entity Legionella pneumophila subsp. pneumophila str. Philadelphia 1
action intersection
action find_reverse
entity calcium deposits in tendon and bursa
relation cause of
action find_reverse
entity Pontiac fever
relation cause of
['Legionella pneumophila subsp. pneumophila str. Philadelphia 1', 'cause of', 'calcium deposits in tendon and bursa'] ['Legionella pneumophila subsp. pneumophila str. Philadelphia 1', 'cause of', 'Pontiac fever']
ASK WHERE { resource:Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1 property:cause_of resource:Pontiac_fever . resource:Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1 property:cause_of resource:calcium_deposits_in_tendon_and_bursa }
[]