Simple Question (Direct)
Simple Question
Q23544288
P681
Q5058355
USER
Which are the cell components of cytochrome c oxidase subunit II    BMA3197 ?
(Q23544288,P681,c(Q5058355))
action filter_type
action find
entity Q23544288
relation P681
type Q5058355
['Q23544288', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?k WHERE { resource:Q23544288 property:P681 ?k . ?k rdf:type ontology:Q5058355 }
cytochrome c oxidase subunit II    BMA3197
action filter_type
action find
entity cytochrome c oxidase subunit II    BMA3197
relation cell component
type cellular component
['cytochrome c oxidase subunit II    BMA3197', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?k WHERE { resource:cytochrome_c_oxidase_subunit_II____BMA3197 property:cell_component ?k . ?k rdf:type ontology:cellular_component }
[]
cellular component
Q29548 Q14819352
SYSTEM
plasma membrane, respiratory chain
Q29548 Q14819352
(Q23544288,P681,c(Q5058355))
action filter_type
action find
entity Q23544288
relation P681
type Q5058355
The cell components of cytochrome c oxidase subunit II BMA 3197 are the [ANSWERS]
['Q23544288', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?k WHERE { resource:Q23544288 property:P681 ?k . ?k rdf:type ontology:Q5058355 }
plasma membrane respiratory chain
The cell components of cytochrome c oxidase subunit II BMA 3197 are the plasma membrane and respiratory chain
plasma membrane respiratory chain
action filter_type
action find
entity cytochrome c oxidase subunit II    BMA3197
relation cell component
type cellular component
['cytochrome c oxidase subunit II    BMA3197', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?k WHERE { resource:cytochrome_c_oxidase_subunit_II____BMA3197 property:cell_component ?k . ?k rdf:type ontology:cellular_component }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23544288
P680
Q44424
USER
What represents the molecular function of cytochrome c oxidase subunit II    BMA3197 ?
(Q23544288,P680,c(Q44424))
action filter_type
action find
entity Q23544288
relation P680
type Q44424
['Q23544288', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?e WHERE { resource:Q23544288 property:P680 ?e . ?e rdf:type ontology:Q44424 }
cytochrome c oxidase subunit II    BMA3197
action filter_type
action find
entity cytochrome c oxidase subunit II    BMA3197
relation molecular function
type chemical bond
['cytochrome c oxidase subunit II    BMA3197', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?e WHERE { resource:cytochrome_c_oxidase_subunit_II____BMA3197 property:molecular_function ?e . ?e rdf:type ontology:chemical_bond }
[]
chemical bond
Q13667380 Q14817980
SYSTEM
metal ion binding, copper ion binding
Q13667380 Q14817980
(Q23544288,P680,c(Q44424))
action filter_type
action find
entity Q23544288
relation P680
type Q44424
[ANSWERS] represent the molecular function of cytochrome c oxidase subunit II BMA3197
['Q23544288', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?e WHERE { resource:Q23544288 property:P680 ?e . ?e rdf:type ontology:Q44424 }
metal ion binding copper ion binding
Metal ion binding and copper ion binding represent the molecular function of cytochrome c oxidase subunit II BMA3197
metal ion binding copper ion binding
action filter_type
action find
entity cytochrome c oxidase subunit II    BMA3197
relation molecular function
type chemical bond
['cytochrome c oxidase subunit II    BMA3197', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?e WHERE { resource:cytochrome_c_oxidase_subunit_II____BMA3197 property:molecular_function ?e . ?e rdf:type ontology:chemical_bond }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q23468901
Q44424
USER
And also tell me about alanyl-tRNA synthetase    Rru_A2818?
(Q23468901,P680,c(Q44424))
action filter_type
action find
entity Q23468901
relation P680
type Q44424
['Q23468901', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?n WHERE { resource:Q23468901 property:P680 ?n . ?n rdf:type ontology:Q44424 }
alanyl-tRNA synthetase    Rru_A2818
action filter_type
action find
entity alanyl-tRNA synthetase    Rru_A2818
relation molecular function
type chemical bond
['alanyl-tRNA synthetase    Rru_A2818', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?n WHERE { resource:alanyl-tRNA_synthetase____Rru_A2818 property:molecular_function ?n . ?n rdf:type ontology:chemical_bond }
[]
chemical bond
Q13667380 Q14633865
SYSTEM
metal ion binding, zinc ion binding
Q13667380 Q14633865
(Q23468901,P680,c(Q44424))
action filter_type
action find
entity Q23468901
relation P680
type Q44424
[ANSWERS]
['Q23468901', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?n WHERE { resource:Q23468901 property:P680 ?n . ?n rdf:type ontology:Q44424 }
metal ion binding zinc ion binding
metal ion binding zinc ion binding
action filter_type
action find
entity alanyl-tRNA synthetase    Rru_A2818
relation molecular function
type chemical bond
['alanyl-tRNA synthetase    Rru_A2818', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?n WHERE { resource:alanyl-tRNA_synthetase____Rru_A2818 property:molecular_function ?n . ?n rdf:type ontology:chemical_bond }
[]
Verification (Boolean) (All)
Verification|one entity, multiple entities (as object) referred indirectly
Q27481926
P680
Q181394
USER
Do hypothetical protein    YPO3368 have the molecular function those chemical bonds ?
(Q27481926,P680,Q13667380) (Q27481926,P680,Q14633865)
action is_in
entity prev_answer
action find
entity Q27481926
relation P680
['Q27481926', 'P680', 'Q13667380'] ['Q27481926', 'P680', 'Q14633865']
ASK WHERE { VALUES ( ?y ) { ( resource:Q13667380 ) ( resource:Q14633865 ) } . resource:Q27481926 property:P680 ?y }
hypothetical protein    YPO3368
action is_in
entity prev_answer
action find
entity hypothetical protein    YPO3368
relation molecular function
['hypothetical protein    YPO3368', 'molecular function', 'metal ion binding'] ['hypothetical protein    YPO3368', 'molecular function', 'zinc ion binding']
ASK WHERE { VALUES ( ?y ) { ( resource:metal_ion_binding ) ( resource:zinc_ion_binding ) } . resource:hypothetical_protein____YPO3368 property:molecular_function ?y }
[]
nutrient
SYSTEM
NO
(Q27481926,P680,Q13667380) (Q27481926,P680,Q14633865)
action is_in
entity prev_answer
action find
entity Q27481926
relation P680
[ANSWER]
['Q27481926', 'P680', 'Q13667380'] ['Q27481926', 'P680', 'Q14633865']
ASK WHERE { VALUES ( ?y ) { ( resource:Q13667380 ) ( resource:Q14633865 ) } . resource:Q27481926 property:P680 ?y }
No
action is_in
entity prev_answer
action find
entity hypothetical protein    YPO3368
relation molecular function
['hypothetical protein    YPO3368', 'molecular function', 'metal ion binding'] ['hypothetical protein    YPO3368', 'molecular function', 'zinc ion binding']
ASK WHERE { VALUES ( ?y ) { ( resource:metal_ion_binding ) ( resource:zinc_ion_binding ) } . resource:hypothetical_protein____YPO3368 property:molecular_function ?y }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q27481926
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
action filter_type
action find_reverse
entity Q27481926
relation P688
type Q863908
SELECT DISTINCT ?h WHERE { ?h property:P688 resource:Q27481926 . ?h rdf:type ontology:Q863908 }
hypothetical protein    YPO3368
action filter_type
action find_reverse
entity hypothetical protein    YPO3368
relation encodes
type nucleic acid sequence
SELECT DISTINCT ?h WHERE { ?h property:encodes resource:hypothetical_protein____YPO3368 . ?h rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q22567157
SYSTEM
hypothetical protein    YPO3368
Q22567157
action filter_type
action find_reverse
entity Q27481926
relation P688
type Q863908
Hypothetical protein YPO3368 encodes that nutrient
SELECT DISTINCT ?h WHERE { ?h property:P688 resource:Q27481926 . ?h rdf:type ontology:Q863908 }
hypothetical protein    YPO3368
Hypothetical protein YPO3368 encodes that nutrient
hypothetical protein    YPO3368
action filter_type
action find_reverse
entity hypothetical protein    YPO3368
relation encodes
type nucleic acid sequence
SELECT DISTINCT ?h WHERE { ?h property:encodes resource:hypothetical_protein____YPO3368 . ?h rdf:type ontology:nucleic_acid_sequence }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q18296164 Q22567157
P688
Q181394
USER
Which nutrients are encoded by hypothetical protein    YPO3368 or Hsh2d ?
OR((Q22567157,P688,c(Q181394)), (Q18296164,P688,c(Q181394)))
action filter_type
action union
action find
entity Q22567157
relation P688
action find
entity Q18296164
relation P688
type Q181394
{'OR': [['Q22567157', 'P688', {'concept': 'Q181394'}], ['Q18296164', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?e WHERE { { { resource:Q22567157 property:P688 ?e } UNION { resource:Q18296164 property:P688 ?e } } . ?e rdf:type ontology:Q181394 }
Hsh2d hypothetical protein    YPO3368
action filter_type
action union
action find
entity hypothetical protein    YPO3368
relation encodes
action find
entity Hsh2d
relation encodes
type nutrient
{'OR': [['hypothetical protein    YPO3368', 'encodes', {'concept': 'nutrient'}], ['Hsh2d', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?e WHERE { { { resource:hypothetical_protein____YPO3368 property:encodes ?e } UNION { resource:Hsh2d property:encodes ?e } } . ?e rdf:type ontology:nutrient }
[]
nutrient
Q27481926 Q21985063
SYSTEM
hypothetical protein    YPO3368, Hematopoietic SH2 domain-containing protein
Q27481926 Q21985063
OR((Q22567157,P688,c(Q181394)), (Q18296164,P688,c(Q181394)))
action filter_type
action union
action find
entity Q22567157
relation P688
action find
entity Q18296164
relation P688
type Q181394
[ANSWERS]
{'OR': [['Q22567157', 'P688', {'concept': 'Q181394'}], ['Q18296164', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?e WHERE { { { resource:Q22567157 property:P688 ?e } UNION { resource:Q18296164 property:P688 ?e } } . ?e rdf:type ontology:Q181394 }
hypothetical protein    YPO3368 Hematopoietic SH2 domain-containing protein
Hypothetical protein YPO3368 and Hematopoietic SH2 domain-containing protein are encoded by hypothetical protein YPO3368 or Hsh2d
hypothetical protein    YPO3368 Hematopoietic SH2 domain-containing protein
action filter_type
action union
action find
entity hypothetical protein    YPO3368
relation encodes
action find
entity Hsh2d
relation encodes
type nutrient
{'OR': [['hypothetical protein    YPO3368', 'encodes', {'concept': 'nutrient'}], ['Hsh2d', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?e WHERE { { { resource:hypothetical_protein____YPO3368 property:encodes ?e } UNION { resource:Hsh2d property:encodes ?e } } . ?e rdf:type ontology:nutrient }
[]
Quantitative Reasoning (All)
Quantitative|Min/Max|Mult. entity type
P129
Q181394 Q79529 Q8386
USER
Which nutrients do min number of chemical substances and drugs contact with ?
(c(Q79529)|c(Q8386),P129,c(Q181394))
action argmin
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
[[{'concept': 'Q79529'}, {'concept': 'Q8386'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?q WHERE { { SELECT DISTINCT ( MIN ( ?r ) AS ?d ) { SELECT DISTINCT ( COUNT ( ?k ) AS ?r ) ?g WHERE { ?k rdf:type ?p . VALUES ( ?p ) { ( ontology:Q79529 ) ( ontology:Q8386 ) } } GROUP BY ?g } } . { SELECT DISTINCT ( COUNT ( ?a ) AS ?i ) ?q WHERE { VALUES ( ?s ) { ( ontology:Q8386 ) ( ontology:Q79529 ) } . ?a rdf:type ?s } GROUP BY ?q } . FILTER ( ?i = ?d ) }
action argmin
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
[[{'concept': 'chemical substance'}, {'concept': 'drug'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?q WHERE { { SELECT DISTINCT ( MIN ( ?r ) AS ?d ) { SELECT DISTINCT ( COUNT ( ?k ) AS ?r ) ?g WHERE { ?k rdf:type ?p . VALUES ( ?p ) { ( ontology:chemical_substance ) ( ontology:drug ) } } GROUP BY ?g } } . { SELECT DISTINCT ( COUNT ( ?a ) AS ?i ) ?q WHERE { VALUES ( ?s ) { ( ontology:drug ) ( ontology:chemical_substance ) } . ?a rdf:type ?s } GROUP BY ?q } . FILTER ( ?i = ?d ) }
[]
nutrient chemical substance drug
Q423510 Q15324125 Q1407929
SYSTEM
Amyloid beta A4 protein, Transient receptor potential cation channel subfamily V member 4, Cytochrome P450 1A1
Q21494718 Q21108693 Q1407929 Q21173169 Q423510 Q21113552 Q21496578 Q21496575 Q21496576 Q15324125 Q21154430 Q3931282 Q21139123 Q21496918 Q5014947 Q21172884 Q21172886 Q315860 Q1979313 Q21495791
(c(Q79529)|c(Q8386),P129,c(Q181394))
action argmin
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
[ANSWERS] min number of chemical substances and drugs contact with
[[{'concept': 'Q79529'}, {'concept': 'Q8386'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?q WHERE { { SELECT DISTINCT ( MIN ( ?r ) AS ?d ) { SELECT DISTINCT ( COUNT ( ?k ) AS ?r ) ?g WHERE { ?k rdf:type ?p . VALUES ( ?p ) { ( ontology:Q79529 ) ( ontology:Q8386 ) } } GROUP BY ?g } } . { SELECT DISTINCT ( COUNT ( ?a ) AS ?i ) ?q WHERE { VALUES ( ?s ) { ( ontology:Q8386 ) ( ontology:Q79529 ) } . ?a rdf:type ?s } GROUP BY ?q } . FILTER ( ?i = ?d ) }
Lysophosphatidic acid receptor 2 G-protein coupled receptor 87 Cytochrome P450 1A1 Lysophosphatidic acid receptor 3 Amyloid beta A4 protein ATP-sensitive inward rectifier potassium channel 14 Lysophosphatidic acid receptor 3 Lysophosphatidic acid receptor 4 Lysophosphatidic acid receptor 6 Transient receptor potential cation channel subfamily V member 4 Lysophosphatidic acid receptor 4 Calcitonin receptor Lysophosphatidic acid receptor 2 Lysophosphatidic acid receptor 1 Cytochrome P450 1B1 Lysophosphatidic acid receptor 6 Lysophosphatidic acid receptor 5 Calcitonin Very low-density lipoprotein receptor Metabotropic glutamate receptor 5
Amyloid beta A4 protein, Transient receptor potential cation channel subfamily V member 4 and Cytochrome P450 1A1 min number of chemical substances and drugs contact with
Amyloid beta A4 protein Transient receptor potential cation channel subfamily V member 4 Cytochrome P450 1A1
action argmin
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
[[{'concept': 'chemical substance'}, {'concept': 'drug'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?q WHERE { { SELECT DISTINCT ( MIN ( ?r ) AS ?d ) { SELECT DISTINCT ( COUNT ( ?k ) AS ?r ) ?g WHERE { ?k rdf:type ?p . VALUES ( ?p ) { ( ontology:chemical_substance ) ( ontology:drug ) } } GROUP BY ?g } } . { SELECT DISTINCT ( COUNT ( ?a ) AS ?i ) ?q WHERE { VALUES ( ?s ) { ( ontology:drug ) ( ontology:chemical_substance ) } . ?a rdf:type ?s } GROUP BY ?q } . FILTER ( ?i = ?d ) }
[]
Simple Question (Direct)
Simple Question|Mult. Entity|Indirect
Q423510 Q15324125 Q1407929
P688
Q863908
USER
Which nucleic acid sequences encodes Amyloid beta A4 protein, Transient receptor potential cation channel subfamily V member 4 and Cytochrome P450 1A1 ?
(c(Q863908),P688,Q423510) (c(Q863908),P688,Q15324125) (c(Q863908),P688,Q1407929)
action union
action filter_type
action find_reverse
entity Q423510
relation P688
type Q863908
action filter_type
action find_reverse
entity Q15324125
relation P688
type Q863908
action filter_type
action find_reverse
entity Q1407929
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q423510'] [{'concept': 'Q863908'}, 'P688', 'Q15324125'] [{'concept': 'Q863908'}, 'P688', 'Q1407929']
SELECT DISTINCT ?e WHERE { { ?e property:P688 resource:Q15324125 . ?e rdf:type ontology:Q863908 } UNION { ?e property:P688 resource:Q423510 . ?e rdf:type ontology:Q863908 } }
Amyloid beta A4 protein Transient receptor potential cation channel subfamily V member 4 Cytochrome P450 1A1
action union
action filter_type
action find_reverse
entity Amyloid beta A4 protein
relation encodes
type nucleic acid sequence
action filter_type
action find_reverse
entity Transient receptor potential cation channel subfamily V member 4
relation encodes
type nucleic acid sequence
action filter_type
action find_reverse
entity Cytochrome P450 1A1
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Amyloid beta A4 protein'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'Transient receptor potential cation channel subfamily V member 4'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'Cytochrome P450 1A1']
SELECT DISTINCT ?e WHERE { { ?e property:encodes resource:Transient_receptor_potential_cation_channel_subfamily_V_member_4 . ?e rdf:type ontology:nucleic_acid_sequence } UNION { ?e property:encodes resource:Amyloid_beta_A4_protein . ?e rdf:type ontology:nucleic_acid_sequence } }
[]
nucleic acid sequence
Q14865870 Q15324121 Q14916461
SYSTEM
APP, Trpv4, CYP1A1
Q14865870 Q15324121 Q14916461
(c(Q863908),P688,Q423510) (c(Q863908),P688,Q15324125) (c(Q863908),P688,Q1407929)
action union
action filter_type
action find_reverse
entity Q423510
relation P688
type Q863908
action filter_type
action find_reverse
entity Q15324125
relation P688
type Q863908
action filter_type
action find_reverse
entity Q1407929
relation P688
type Q863908
[ANSWERS] encode Amyloid beta A4 protein, Transient receptor potential cation channel subfamily V member 4 and Cytochrome P450 1A1
[{'concept': 'Q863908'}, 'P688', 'Q423510'] [{'concept': 'Q863908'}, 'P688', 'Q15324125'] [{'concept': 'Q863908'}, 'P688', 'Q1407929']
SELECT DISTINCT ?e WHERE { { ?e property:P688 resource:Q15324125 . ?e rdf:type ontology:Q863908 } UNION { ?e property:P688 resource:Q423510 . ?e rdf:type ontology:Q863908 } }
APP Trpv4 CYP1A1
APP, Trpv4 and CYP1A1 encode Amyloid beta A4 protein, Transient receptor potential cation channel subfamily V member 4 and Cytochrome P450 1A1
APP Trpv4 CYP1A1
action union
action filter_type
action find_reverse
entity Amyloid beta A4 protein
relation encodes
type nucleic acid sequence
action filter_type
action find_reverse
entity Transient receptor potential cation channel subfamily V member 4
relation encodes
type nucleic acid sequence
action filter_type
action find_reverse
entity Cytochrome P450 1A1
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Amyloid beta A4 protein'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'Transient receptor potential cation channel subfamily V member 4'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'Cytochrome P450 1A1']
SELECT DISTINCT ?e WHERE { { ?e property:encodes resource:Transient_receptor_potential_cation_channel_subfamily_V_member_4 . ?e rdf:type ontology:nucleic_acid_sequence } UNION { ?e property:encodes resource:Amyloid_beta_A4_protein . ?e rdf:type ontology:nucleic_acid_sequence } }
[]
Simple Question (Direct)
Simple Question|Mult. Entity|Indirect
Q14865870 Q15324121 Q14916461
P684
Q863908
USER
What are the name of the species that have APP, Trpv4 and CYP1A1 as their orthologous gene ?
(c(Q863908),P684,Q14865870) (c(Q863908),P684,Q15324121) (c(Q863908),P684,Q14916461)
action union
action filter_type
action find
entity Q14865870
relation P684
type Q863908
action filter_type
action find
entity Q15324121
relation P684
type Q863908
action filter_type
action find
entity Q14916461
relation P684
type Q863908
[{'concept': 'Q863908'}, 'P684', 'Q14865870'] [{'concept': 'Q863908'}, 'P684', 'Q15324121'] [{'concept': 'Q863908'}, 'P684', 'Q14916461']
SELECT DISTINCT ?y WHERE { VALUES ( ?r ) { ( resource:Q14865870 ) ( resource:Q15324121 ) } . ?r property:P684 ?y }
APP Trpv4 CYP1A1
action union
action filter_type
action find
entity APP
relation ortholog
type nucleic acid sequence
action filter_type
action find
entity Trpv4
relation ortholog
type nucleic acid sequence
action filter_type
action find
entity CYP1A1
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'APP'] [{'concept': 'nucleic acid sequence'}, 'ortholog', 'Trpv4'] [{'concept': 'nucleic acid sequence'}, 'ortholog', 'CYP1A1']
SELECT DISTINCT ?y WHERE { VALUES ( ?r ) { ( resource:APP ) ( resource:Trpv4 ) } . ?r property:ortholog ?y }
[]
nucleic acid sequence
Q14865873 Q15324120 Q14916462
SYSTEM
App, TRPV4, Cyp1a1
Q14865873 Q15324120 Q14916462
(c(Q863908),P684,Q14865870) (c(Q863908),P684,Q15324121) (c(Q863908),P684,Q14916461)
action union
action filter_type
action find
entity Q14865870
relation P684
type Q863908
action filter_type
action find
entity Q15324121
relation P684
type Q863908
action filter_type
action find
entity Q14916461
relation P684
type Q863908
The name of the species that have APP , Trpv4 and CYP1 A1 as their orthologous gene are AP [ANSWERS]
[{'concept': 'Q863908'}, 'P684', 'Q14865870'] [{'concept': 'Q863908'}, 'P684', 'Q15324121'] [{'concept': 'Q863908'}, 'P684', 'Q14916461']
SELECT DISTINCT ?y WHERE { VALUES ( ?r ) { ( resource:Q14865870 ) ( resource:Q15324121 ) } . ?r property:P684 ?y }
App TRPV4 Cyp1a1
The name of the species that have APP , Trpv4 and CYP1 A1 as their orthologous gene are AP App, TRPV4 and Cyp1a1
App TRPV4 Cyp1a1
action union
action filter_type
action find
entity APP
relation ortholog
type nucleic acid sequence
action filter_type
action find
entity Trpv4
relation ortholog
type nucleic acid sequence
action filter_type
action find
entity CYP1A1
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'APP'] [{'concept': 'nucleic acid sequence'}, 'ortholog', 'Trpv4'] [{'concept': 'nucleic acid sequence'}, 'ortholog', 'CYP1A1']
SELECT DISTINCT ?y WHERE { VALUES ( ?r ) { ( resource:APP ) ( resource:Trpv4 ) } . ?r property:ortholog ?y }
[]
Clarification
Simple Question|Single Entity|Indirect
Q14865873
P702
Q181394
USER
What is encoded by that nucleic acid sequence ?
(c(Q181394),P702,Q14865873)
action filter_type
action find_reverse
entity Q14865873
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q14865873']
SELECT DISTINCT ?z WHERE { ?z property:P702 resource:Q14865873 . ?z rdf:type ontology:Q181394 }
App
action filter_type
action find_reverse
entity App
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'App']
SELECT DISTINCT ?z WHERE { ?z property:encoded_by resource:App . ?z rdf:type ontology:nutrient }
[]
nutrient
Clarification for simple ques.
Q14916462
SYSTEM
Did you mean Cyp1a1 ?
Q14865873 Q15324120 Q14916462
(c(Q181394),P702,Q14865873) (c(Q181394),P702,Q15324120) (c(Q181394),P702,Q14916462)
[ANSWER]
[{'concept': 'Q181394'}, 'P702', 'Q14865873'] [{'concept': 'Q181394'}, 'P702', 'Q15324120'] [{'concept': 'Q181394'}, 'P702', 'Q14916462']
SELECT DISTINCT ?z WHERE { ?z property:P702 resource:Q14865873 . ?z rdf:type ontology:Q181394 }
App TRPV4 Cyp1a1
Did you mean Cyp1a1 ?
Cyp1a1
[{'concept': 'nutrient'}, 'encoded by', 'App'] [{'concept': 'nutrient'}, 'encoded by', 'TRPV4'] [{'concept': 'nutrient'}, 'encoded by', 'Cyp1a1']
SELECT DISTINCT ?z WHERE { ?z property:encoded_by resource:App . ?z rdf:type ontology:nutrient }
[]
Simple Question (Coreferenced)
USER
No, I meant App. Could you tell me the answer for that?
(c(Q181394),P702,Q14865873)
Q14865873
[{'concept': 'Q181394'}, 'P702', 'Q14865873']
[{'concept': 'nutrient'}, 'encoded by', 'App']
[]
Q14865884
SYSTEM
Amyloid beta A4 protein
Q14865884
(c(Q181394),P702,Q14865873)
action filter_type
action find_reverse
entity Q14865873
relation P702
type Q181394
The [ANSWER] is encoded by that nucleic acid sequence
[{'concept': 'Q181394'}, 'P702', 'Q14865873']
SELECT DISTINCT ?z WHERE { ?z property:P702 resource:Q14865873 . ?z rdf:type ontology:Q181394 }
Amyloid beta A4 protein
The Amyloid beta A4 protein is encoded by that nucleic acid sequence
Amyloid beta A4 protein
action filter_type
action find_reverse
entity App
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'App']
SELECT DISTINCT ?z WHERE { ?z property:encoded_by resource:App . ?z rdf:type ontology:nutrient }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type|Indirect
P688
Q863908
USER
How many nucleic acid sequences encode that nutrient ?
(c(Q863908),P688,Q14865884)
action count
action filter_type
action find_reverse
entity Q14865884
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q14865884']
SELECT DISTINCT ( COUNT ( ?m ) AS ?d ) WHERE { ?m property:P688 resource:Q14865884 . ?m rdf:type ontology:Q863908 }
action count
action filter_type
action find_reverse
entity Amyloid beta A4 protein
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Amyloid beta A4 protein']
SELECT DISTINCT ( COUNT ( ?m ) AS ?d ) WHERE { ?m property:encodes resource:Amyloid_beta_A4_protein . ?m rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
SYSTEM
1
Q14865873
(c(Q863908),P688,Q14865884)
action count
action filter_type
action find_reverse
entity Q14865884
relation P688
type Q863908
[ANSWER]
[{'concept': 'Q863908'}, 'P688', 'Q14865884']
SELECT DISTINCT ( COUNT ( ?m ) AS ?d ) WHERE { ?m property:P688 resource:Q14865884 . ?m rdf:type ontology:Q863908 }
App
1
action count
action filter_type
action find_reverse
entity Amyloid beta A4 protein
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Amyloid beta A4 protein']
SELECT DISTINCT ( COUNT ( ?m ) AS ?d ) WHERE { ?m property:encodes resource:Amyloid_beta_A4_protein . ?m rdf:type ontology:nucleic_acid_sequence }
[]