Simple Question (Direct)
Simple Question
Q23425199
P703
Q631147
USER
What is the taxon to which camphor resistance protein CrcB    YE0963 belongs to ?
(Q23425199,P703,c(Q631147))
action filter_type
action find
entity Q23425199
relation P703
type Q631147
['Q23425199', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?h WHERE { resource:Q23425199 property:P703 ?h . ?h rdf:type ontology:Q631147 }
camphor resistance protein CrcB    YE0963
action filter_type
action find
entity camphor resistance protein CrcB    YE0963
relation found in taxon
type infraspecific name
['camphor resistance protein CrcB    YE0963', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?h WHERE { resource:camphor_resistance_protein_CrcB____YE0963 property:found_in_taxon ?h . ?h rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102942
SYSTEM
Yersinia enterocolitica subsp. enterocolitica 8081
Q21102942
(Q23425199,P703,c(Q631147))
action filter_type
action find
entity Q23425199
relation P703
type Q631147
[ANSWER]
['Q23425199', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?h WHERE { resource:Q23425199 property:P703 ?h . ?h rdf:type ontology:Q631147 }
Yersinia enterocolitica subsp. enterocolitica 8081
Yersinia enterocolitica subsp. enterocolitica 8081
Yersinia enterocolitica subsp. enterocolitica 8081
action filter_type
action find
entity camphor resistance protein CrcB    YE0963
relation found in taxon
type infraspecific name
['camphor resistance protein CrcB    YE0963', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?h WHERE { resource:camphor_resistance_protein_CrcB____YE0963 property:found_in_taxon ?h . ?h rdf:type ontology:infraspecific_name }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23425199
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(c(Q863908),P688,Q21102942)
action filter_type
action find_reverse
entity Q23425199
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q21102942']
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:Q863908 . ?m property:P688 resource:Q23425199 }
camphor resistance protein CrcB    YE0963
action filter_type
action find_reverse
entity camphor resistance protein CrcB    YE0963
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Yersinia enterocolitica subsp. enterocolitica 8081']
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:nucleic_acid_sequence . ?m property:encodes resource:camphor_resistance_protein_CrcB____YE0963 }
[]
nucleic acid sequence
Q23099099
SYSTEM
camphor resistance protein CrcB    YE0963
Q23099099
(c(Q863908),P688,Q21102942)
action filter_type
action find_reverse
entity Q23425199
relation P688
type Q863908
Camphor resistance protein CrcB YE0963 encodes that nutrient
[{'concept': 'Q863908'}, 'P688', 'Q21102942']
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:Q863908 . ?m property:P688 resource:Q23425199 }
camphor resistance protein CrcB    YE0963
Camphor resistance protein CrcB YE0963 encodes that nutrient
camphor resistance protein CrcB    YE0963
action filter_type
action find_reverse
entity camphor resistance protein CrcB    YE0963
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Yersinia enterocolitica subsp. enterocolitica 8081']
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:nucleic_acid_sequence . ?m property:encodes resource:camphor_resistance_protein_CrcB____YE0963 }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23425199
P702
Q863908
USER
Which nucleic acid sequence encodes camphor resistance protein CrcB    YE0963 ?
(Q23425199,P702,c(Q863908))
action filter_type
action find
entity Q23425199
relation P702
type Q863908
['Q23425199', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?d WHERE { resource:Q23425199 property:P702 ?d . ?d rdf:type ontology:Q863908 }
camphor resistance protein CrcB    YE0963
action filter_type
action find
entity camphor resistance protein CrcB    YE0963
relation encoded by
type nucleic acid sequence
['camphor resistance protein CrcB    YE0963', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?d WHERE { resource:camphor_resistance_protein_CrcB____YE0963 property:encoded_by ?d . ?d rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23099099
SYSTEM
camphor resistance protein CrcB    YE0963
Q23099099
(Q23425199,P702,c(Q863908))
action filter_type
action find
entity Q23425199
relation P702
type Q863908
3 camphor resistance protein CrcB YE0963 encodes camphor resistance protein CrcB YE0963
['Q23425199', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?d WHERE { resource:Q23425199 property:P702 ?d . ?d rdf:type ontology:Q863908 }
camphor resistance protein CrcB    YE0963
3 camphor resistance protein CrcB YE0963 encodes camphor resistance protein CrcB YE0963
camphor resistance protein CrcB    YE0963
action filter_type
action find
entity camphor resistance protein CrcB    YE0963
relation encoded by
type nucleic acid sequence
['camphor resistance protein CrcB    YE0963', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?d WHERE { resource:camphor_resistance_protein_CrcB____YE0963 property:encoded_by ?d . ?d rdf:type ontology:nucleic_acid_sequence }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type|Indirect
P688
Q181394
USER
How many nutrients do that nucleic acid sequence encode ?
(Q23099099,P688,c(Q181394))
action count
action filter_type
action find
entity Q23099099
relation P688
type Q181394
['Q23099099', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?u ) AS ?g ) WHERE { ?u rdf:type ontology:Q181394 . resource:Q23099099 property:P688 ?u }
action count
action filter_type
action find
entity camphor resistance protein CrcB    YE0963
relation encodes
type nutrient
['camphor resistance protein CrcB    YE0963', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?u ) AS ?g ) WHERE { ?u rdf:type ontology:nutrient . resource:camphor_resistance_protein_CrcB____YE0963 property:encodes ?u }
[]
nutrient
SYSTEM
1
Q23425199
(Q23099099,P688,c(Q181394))
action count
action filter_type
action find
entity Q23099099
relation P688
type Q181394
[ANSWER]
['Q23099099', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?u ) AS ?g ) WHERE { ?u rdf:type ontology:Q181394 . resource:Q23099099 property:P688 ?u }
camphor resistance protein CrcB    YE0963
1
action count
action filter_type
action find
entity camphor resistance protein CrcB    YE0963
relation encodes
type nutrient
['camphor resistance protein CrcB    YE0963', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?u ) AS ?g ) WHERE { ?u rdf:type ontology:nutrient . resource:camphor_resistance_protein_CrcB____YE0963 property:encodes ?u }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q18051408 Q23099099
P688
Q181394
USER
Which nutrients are encoded by camphor resistance protein CrcB    YE0963 or TERB2 ?
OR((Q23099099,P688,c(Q181394)), (Q18051408,P688,c(Q181394)))
action filter_type
action union
action find
entity Q23099099
relation P688
action find
entity Q18051408
relation P688
type Q181394
{'OR': [['Q23099099', 'P688', {'concept': 'Q181394'}], ['Q18051408', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?z WHERE { { { resource:Q18051408 property:P688 ?z } UNION { resource:Q23099099 property:P688 ?z } } . ?z rdf:type ontology:Q181394 }
TERB2 camphor resistance protein CrcB    YE0963
action filter_type
action union
action find
entity camphor resistance protein CrcB    YE0963
relation encodes
action find
entity TERB2
relation encodes
type nutrient
{'OR': [['camphor resistance protein CrcB    YE0963', 'encodes', {'concept': 'nutrient'}], ['TERB2', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?z WHERE { { { resource:TERB2 property:encodes ?z } UNION { resource:camphor_resistance_protein_CrcB____YE0963 property:encodes ?z } } . ?z rdf:type ontology:nutrient }
[]
nutrient
Q21102454 Q23425199
SYSTEM
Telomere repeats-binding bouquet formation protein 2, camphor resistance protein CrcB    YE0963
Q21102454 Q23425199
OR((Q23099099,P688,c(Q181394)), (Q18051408,P688,c(Q181394)))
action filter_type
action union
action find
entity Q23099099
relation P688
action find
entity Q18051408
relation P688
type Q181394
[ANSWERS]
{'OR': [['Q23099099', 'P688', {'concept': 'Q181394'}], ['Q18051408', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?z WHERE { { { resource:Q18051408 property:P688 ?z } UNION { resource:Q23099099 property:P688 ?z } } . ?z rdf:type ontology:Q181394 }
Telomere repeats-binding bouquet formation protein 2 camphor resistance protein CrcB    YE0963
Telomere repeats-binding bouquet formation protein 2 and camphor resistance protein CrcB YE0963 are encoded by camphor resistance protein CrcB YE0963 or TERB2
Telomere repeats-binding bouquet formation protein 2 camphor resistance protein CrcB    YE0963
action filter_type
action union
action find
entity camphor resistance protein CrcB    YE0963
relation encodes
action find
entity TERB2
relation encodes
type nutrient
{'OR': [['camphor resistance protein CrcB    YE0963', 'encodes', {'concept': 'nutrient'}], ['TERB2', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?z WHERE { { { resource:TERB2 property:encodes ?z } UNION { resource:camphor_resistance_protein_CrcB____YE0963 property:encodes ?z } } . ?z rdf:type ontology:nutrient }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23382389 Q23099099
P688
Q181394
USER
Which nutrients are encoded by camphor resistance protein CrcB    YE0963 or HAD superfamily hydrolase    BT9727_3793 ?
OR((Q23099099,P688,c(Q181394)), (Q23382389,P688,c(Q181394)))
action filter_type
action union
action find
entity Q23099099
relation P688
action find
entity Q23382389
relation P688
type Q181394
{'OR': [['Q23099099', 'P688', {'concept': 'Q181394'}], ['Q23382389', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?v WHERE { { { resource:Q23099099 property:P688 ?v } UNION { resource:Q23382389 property:P688 ?v } } . ?v rdf:type ontology:Q181394 }
HAD superfamily hydrolase    BT9727_3793 camphor resistance protein CrcB    YE0963
action filter_type
action union
action find
entity camphor resistance protein CrcB    YE0963
relation encodes
action find
entity HAD superfamily hydrolase    BT9727_3793
relation encodes
type nutrient
{'OR': [['camphor resistance protein CrcB    YE0963', 'encodes', {'concept': 'nutrient'}], ['HAD superfamily hydrolase    BT9727_3793', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?v WHERE { { { resource:camphor_resistance_protein_CrcB____YE0963 property:encodes ?v } UNION { resource:HAD_superfamily_hydrolase____BT9727_3793 property:encodes ?v } } . ?v rdf:type ontology:nutrient }
[]
nutrient
Q23519457 Q23425199
SYSTEM
HAD superfamily hydrolase    BT9727_3793, camphor resistance protein CrcB    YE0963
Q23519457 Q23425199
OR((Q23099099,P688,c(Q181394)), (Q23382389,P688,c(Q181394)))
action filter_type
action union
action find
entity Q23099099
relation P688
action find
entity Q23382389
relation P688
type Q181394
[ANSWERS]
{'OR': [['Q23099099', 'P688', {'concept': 'Q181394'}], ['Q23382389', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?v WHERE { { { resource:Q23099099 property:P688 ?v } UNION { resource:Q23382389 property:P688 ?v } } . ?v rdf:type ontology:Q181394 }
HAD superfamily hydrolase    BT9727_3793 camphor resistance protein CrcB    YE0963
HAD superfamily hydrolase BT9727 3793 and camphor resistance protein CrcB YE0963 are encoded by camphor resistance protein CrcB YE0963 or HAD superfamily hydrolase BT9727_3793
HAD superfamily hydrolase    BT9727_3793 camphor resistance protein CrcB    YE0963
action filter_type
action union
action find
entity camphor resistance protein CrcB    YE0963
relation encodes
action find
entity HAD superfamily hydrolase    BT9727_3793
relation encodes
type nutrient
{'OR': [['camphor resistance protein CrcB    YE0963', 'encodes', {'concept': 'nutrient'}], ['HAD superfamily hydrolase    BT9727_3793', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?v WHERE { { { resource:camphor_resistance_protein_CrcB____YE0963 property:encodes ?v } UNION { resource:HAD_superfamily_hydrolase____BT9727_3793 property:encodes ?v } } . ?v rdf:type ontology:nutrient }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q21989863 Q23425199
P681
Q5058355
USER
Which cellular components are the components of camphor resistance protein CrcB    YE0963 or 3-phosphoinositide-dependent protein kinase 1 ?
OR((Q23425199,P681,c(Q5058355)), (Q21989863,P681,c(Q5058355)))
action filter_type
action union
action find
entity Q23425199
relation P681
action find
entity Q21989863
relation P681
type Q5058355
{'OR': [['Q23425199', 'P681', {'concept': 'Q5058355'}], ['Q21989863', 'P681', {'concept': 'Q5058355'}]]}
SELECT DISTINCT ?h WHERE { { { resource:Q23425199 property:P681 ?h } UNION { resource:Q21989863 property:P681 ?h } } . ?h rdf:type ontology:Q5058355 }
3-phosphoinositide-dependent protein kinase 1 camphor resistance protein CrcB    YE0963
action filter_type
action union
action find
entity camphor resistance protein CrcB    YE0963
relation cell component
action find
entity 3-phosphoinositide-dependent protein kinase 1
relation cell component
type cellular component
{'OR': [['camphor resistance protein CrcB    YE0963', 'cell component', {'concept': 'cellular component'}], ['3-phosphoinositide-dependent protein kinase 1', 'cell component', {'concept': 'cellular component'}]]}
SELECT DISTINCT ?h WHERE { { { resource:camphor_resistance_protein_CrcB____YE0963 property:cell_component ?h } UNION { resource:3-phosphoinositide-dependent_protein_kinase_1 property:cell_component ?h } } . ?h rdf:type ontology:cellular_component }
[]
cellular component
Q29548 Q14353100
SYSTEM
plasma membrane, cell projection
Q29548 Q14353100
OR((Q23425199,P681,c(Q5058355)), (Q21989863,P681,c(Q5058355)))
action filter_type
action union
action find
entity Q23425199
relation P681
action find
entity Q21989863
relation P681
type Q5058355
Membrane [ANSWERS] are the components of camphor resistance protein CrcB YE0963 or 3-phosphoinositide-dependent protein kinase 1
{'OR': [['Q23425199', 'P681', {'concept': 'Q5058355'}], ['Q21989863', 'P681', {'concept': 'Q5058355'}]]}
SELECT DISTINCT ?h WHERE { { { resource:Q23425199 property:P681 ?h } UNION { resource:Q21989863 property:P681 ?h } } . ?h rdf:type ontology:Q5058355 }
plasma membrane cell projection
Membrane plasma membrane and cell projection are the components of camphor resistance protein CrcB YE0963 or 3-phosphoinositide-dependent protein kinase 1
plasma membrane cell projection
action filter_type
action union
action find
entity camphor resistance protein CrcB    YE0963
relation cell component
action find
entity 3-phosphoinositide-dependent protein kinase 1
relation cell component
type cellular component
{'OR': [['camphor resistance protein CrcB    YE0963', 'cell component', {'concept': 'cellular component'}], ['3-phosphoinositide-dependent protein kinase 1', 'cell component', {'concept': 'cellular component'}]]}
SELECT DISTINCT ?h WHERE { { { resource:camphor_resistance_protein_CrcB____YE0963 property:cell_component ?h } UNION { resource:3-phosphoinositide-dependent_protein_kinase_1 property:cell_component ?h } } . ?h rdf:type ontology:cellular_component }
[]
Logical Reasoning (All)
Logical|Intersection|Multiple_Relation
Q21102972 Q23382389
P703 P702
Q181394
USER
Which nutrients are encoded by HAD superfamily hydrolase    BT9727_3793 and are found in the taxon Bacillus thuringiensis serovar konkukian str. 97-27 ?
AND((c(Q181394),P702,Q23382389), (c(Q181394),P703,Q21102972))
action filter_type
action intersection
action find_reverse
entity Q23382389
relation P702
action find_reverse
entity Q21102972
relation P703
type Q181394
{'AND': [[{'concept': 'Q181394'}, 'P702', 'Q23382389'], [{'concept': 'Q181394'}, 'P703', 'Q21102972']]}
SELECT DISTINCT ?h WHERE { ?h property:P702 resource:Q23382389 . ?h property:P703 resource:Q21102972 . ?h rdf:type ontology:Q181394 }
Bacillus thuringiensis serovar konkukian str. 97-27 HAD superfamily hydrolase    BT9727_3793
action filter_type
action intersection
action find_reverse
entity HAD superfamily hydrolase    BT9727_3793
relation encoded by
action find_reverse
entity Bacillus thuringiensis serovar konkukian str. 97-27
relation found in taxon
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'encoded by', 'HAD superfamily hydrolase    BT9727_3793'], [{'concept': 'nutrient'}, 'found in taxon', 'Bacillus thuringiensis serovar konkukian str. 97-27']]}
SELECT DISTINCT ?h WHERE { ?h property:encoded_by resource:HAD_superfamily_hydrolase____BT9727_3793 . ?h property:found_in_taxon resource:Bacillus_thuringiensis_serovar_konkukian_str._97-27 . ?h rdf:type ontology:nutrient }
[]
nutrient
Q23519457
SYSTEM
HAD superfamily hydrolase    BT9727_3793
Q23519457
AND((c(Q181394),P702,Q23382389), (c(Q181394),P703,Q21102972))
action filter_type
action intersection
action find_reverse
entity Q23382389
relation P702
action find_reverse
entity Q21102972
relation P703
type Q181394
Had superfamily hydrolase BT9727 3793 is encoded by had superfamily hydrolase BT9727_3793 and is found in the taxon Bacillus thuringiensis serovar konkukian str. 97-27
{'AND': [[{'concept': 'Q181394'}, 'P702', 'Q23382389'], [{'concept': 'Q181394'}, 'P703', 'Q21102972']]}
SELECT DISTINCT ?h WHERE { ?h property:P702 resource:Q23382389 . ?h property:P703 resource:Q21102972 . ?h rdf:type ontology:Q181394 }
HAD superfamily hydrolase    BT9727_3793
Had superfamily hydrolase BT9727 3793 is encoded by had superfamily hydrolase BT9727_3793 and is found in the taxon Bacillus thuringiensis serovar konkukian str. 97-27
HAD superfamily hydrolase    BT9727_3793
action filter_type
action intersection
action find_reverse
entity HAD superfamily hydrolase    BT9727_3793
relation encoded by
action find_reverse
entity Bacillus thuringiensis serovar konkukian str. 97-27
relation found in taxon
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'encoded by', 'HAD superfamily hydrolase    BT9727_3793'], [{'concept': 'nutrient'}, 'found in taxon', 'Bacillus thuringiensis serovar konkukian str. 97-27']]}
SELECT DISTINCT ?h WHERE { ?h property:encoded_by resource:HAD_superfamily_hydrolase____BT9727_3793 . ?h property:found_in_taxon resource:Bacillus_thuringiensis_serovar_konkukian_str._97-27 . ?h rdf:type ontology:nutrient }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, subject is indirect
Q23519457 Q23382389
P702
Q863908
USER
Does HAD superfamily hydrolase    BT9727_3793 encode that nutrient ?
(Q23519457,P702,Q23382389)
action is_in
entity Q23382389
action find
entity Q23519457
relation P702
['Q23519457', 'P702', 'Q23382389']
ASK WHERE { resource:Q23519457 property:P702 resource:Q23382389 }
HAD superfamily hydrolase    BT9727_3793 HAD superfamily hydrolase    BT9727_3793
action is_in
entity HAD superfamily hydrolase    BT9727_3793
action find
entity HAD superfamily hydrolase    BT9727_3793
relation encoded by
['HAD superfamily hydrolase    BT9727_3793', 'encoded by', 'HAD superfamily hydrolase    BT9727_3793']
ASK WHERE { resource:HAD_superfamily_hydrolase____BT9727_3793 property:encoded_by resource:HAD_superfamily_hydrolase____BT9727_3793 }
[]
nucleic acid sequence
SYSTEM
YES
(Q23519457,P702,Q23382389)
action is_in
entity Q23382389
action find
entity Q23519457
relation P702
[ANSWER]
['Q23519457', 'P702', 'Q23382389']
ASK WHERE { resource:Q23519457 property:P702 resource:Q23382389 }
Yes
action is_in
entity HAD superfamily hydrolase    BT9727_3793
action find
entity HAD superfamily hydrolase    BT9727_3793
relation encoded by
['HAD superfamily hydrolase    BT9727_3793', 'encoded by', 'HAD superfamily hydrolase    BT9727_3793']
ASK WHERE { resource:HAD_superfamily_hydrolase____BT9727_3793 property:encoded_by resource:HAD_superfamily_hydrolase____BT9727_3793 }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, subject is indirect
Q21102454 Q18051408
P702
Q863908
USER
Is TERB2 the gene that encodes that nutrient ?
(Q21102454,P702,Q18051408)
action is_in
entity Q18051408
action find
entity Q21102454
relation P702
['Q21102454', 'P702', 'Q18051408']
ASK WHERE { resource:Q21102454 property:P702 resource:Q18051408 }
Telomere repeats-binding bouquet formation protein 2 TERB2
action is_in
entity TERB2
action find
entity Telomere repeats-binding bouquet formation protein 2
relation encoded by
['Telomere repeats-binding bouquet formation protein 2', 'encoded by', 'TERB2']
ASK WHERE { resource:Telomere_repeats-binding_bouquet_formation_protein_2 property:encoded_by resource:TERB2 }
[]
nucleic acid sequence
SYSTEM
YES
(Q21102454,P702,Q18051408)
action is_in
entity Q18051408
action find
entity Q21102454
relation P702
[ANSWER]
['Q21102454', 'P702', 'Q18051408']
ASK WHERE { resource:Q21102454 property:P702 resource:Q18051408 }
Yes
action is_in
entity TERB2
action find
entity Telomere repeats-binding bouquet formation protein 2
relation encoded by
['Telomere repeats-binding bouquet formation protein 2', 'encoded by', 'TERB2']
ASK WHERE { resource:Telomere_repeats-binding_bouquet_formation_protein_2 property:encoded_by resource:TERB2 }
[]