Simple Question (Direct)
Simple Question
Q21984036
P682
Q3249551
USER
Which process is Guanine nucleotide-binding protein G(t) subunit alpha-2 involved in ?
(Q21984036,P682,c(Q3249551))
action filter_type
action find
entity Q21984036
relation P682
type Q3249551
['Q21984036', 'P682', {'concept': 'Q3249551'}]
SELECT DISTINCT ?i WHERE { ?i rdf:type ontology:Q3249551 . resource:Q21984036 property:P682 ?i }
Guanine nucleotide-binding protein G(t) subunit alpha-2
action filter_type
action find
entity Guanine nucleotide-binding protein G(t) subunit alpha-2
relation biological process
type process
['Guanine nucleotide-binding protein G(t) subunit alpha-2', 'biological process', {'concept': 'process'}]
SELECT DISTINCT ?i WHERE { ?i rdf:type ontology:process . resource:Guanine_nucleotide-binding_protein_G(t)_subunit_alpha-2 property:biological_process ?i }
[]
process
Q14859560
SYSTEM
response to stimulus
Q14859560
(Q21984036,P682,c(Q3249551))
action filter_type
action find
entity Q21984036
relation P682
type Q3249551
[ANSWER] is Guanine nucleotide-binding protein G(t) subunit alpha-2 involved in
['Q21984036', 'P682', {'concept': 'Q3249551'}]
SELECT DISTINCT ?i WHERE { ?i rdf:type ontology:Q3249551 . resource:Q21984036 property:P682 ?i }
response to stimulus
Response to stimulus is Guanine nucleotide-binding protein G(t) subunit alpha-2 involved in
response to stimulus
action filter_type
action find
entity Guanine nucleotide-binding protein G(t) subunit alpha-2
relation biological process
type process
['Guanine nucleotide-binding protein G(t) subunit alpha-2', 'biological process', {'concept': 'process'}]
SELECT DISTINCT ?i WHERE { ?i rdf:type ontology:process . resource:Guanine_nucleotide-binding_protein_G(t)_subunit_alpha-2 property:biological_process ?i }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21984036
P688
Q863908
USER
Which nucleic acid sequence encodes Guanine nucleotide-binding protein G(t) subunit alpha-2 ?
(c(Q863908),P688,Q21984036)
action filter_type
action find_reverse
entity Q21984036
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q21984036']
SELECT DISTINCT ?w WHERE { ?w property:P688 resource:Q21984036 . ?w rdf:type ontology:Q863908 }
Guanine nucleotide-binding protein G(t) subunit alpha-2
action filter_type
action find_reverse
entity Guanine nucleotide-binding protein G(t) subunit alpha-2
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Guanine nucleotide-binding protein G(t) subunit alpha-2']
SELECT DISTINCT ?w WHERE { ?w property:encodes resource:Guanine_nucleotide-binding_protein_G(t)_subunit_alpha-2 . ?w rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18250879
SYSTEM
Gnat2
Q18250879
(c(Q863908),P688,Q21984036)
action filter_type
action find_reverse
entity Q21984036
relation P688
type Q863908
[ANSWER] encodes Guanine nucleotide-binding protein G(t) subunit alpha-2
[{'concept': 'Q863908'}, 'P688', 'Q21984036']
SELECT DISTINCT ?w WHERE { ?w property:P688 resource:Q21984036 . ?w rdf:type ontology:Q863908 }
Gnat2
Gnat2 encodes Guanine nucleotide-binding protein G(t) subunit alpha-2
Gnat2
action filter_type
action find_reverse
entity Guanine nucleotide-binding protein G(t) subunit alpha-2
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Guanine nucleotide-binding protein G(t) subunit alpha-2']
SELECT DISTINCT ?w WHERE { ?w property:encodes resource:Guanine_nucleotide-binding_protein_G(t)_subunit_alpha-2 . ?w rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18250879
P684
Q863908
USER
Which nucleic acid sequence has that one as its orthologous gene ?
(c(Q863908),P684,Q18250879)
action filter_type
action find
entity Q18250879
relation P684
type Q863908
[{'concept': 'Q863908'}, 'P684', 'Q18250879']
SELECT DISTINCT ?r WHERE { ?r rdf:type ontology:Q863908 . resource:Q18250879 property:P684 ?r }
Gnat2
action filter_type
action find
entity Gnat2
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'Gnat2']
SELECT DISTINCT ?r WHERE { ?r rdf:type ontology:nucleic_acid_sequence . resource:Gnat2 property:ortholog ?r }
[]
nucleic acid sequence
Q18026244
SYSTEM
GNAT2
Q18026244
(c(Q863908),P684,Q18250879)
action filter_type
action find
entity Q18250879
relation P684
type Q863908
[ANSWER] has that one as its orthologous gene
[{'concept': 'Q863908'}, 'P684', 'Q18250879']
SELECT DISTINCT ?r WHERE { ?r rdf:type ontology:Q863908 . resource:Q18250879 property:P684 ?r }
GNAT2
GNAT2 has that one as its orthologous gene
GNAT2
action filter_type
action find
entity Gnat2
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'Gnat2']
SELECT DISTINCT ?r WHERE { ?r rdf:type ontology:nucleic_acid_sequence . resource:Gnat2 property:ortholog ?r }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18026244
P2293
Q2057971
USER
Which health problem has genetic association with that nucleic acid sequence ?
(Q18026244,P2293,c(Q2057971))
action filter_type
action find
entity Q18026244
relation P2293
type Q2057971
['Q18026244', 'P2293', {'concept': 'Q2057971'}]
SELECT DISTINCT ?m WHERE { resource:Q18026244 property:P2293 ?m . ?m rdf:type ontology:Q2057971 }
GNAT2
action filter_type
action find
entity GNAT2
relation genetic association
type health problem
['GNAT2', 'genetic association', {'concept': 'health problem'}]
SELECT DISTINCT ?m WHERE { resource:GNAT2 property:genetic_association ?m . ?m rdf:type ontology:health_problem }
[]
health problem
Q12174
SYSTEM
obesity
Q12174
(Q18026244,P2293,c(Q2057971))
action filter_type
action find
entity Q18026244
relation P2293
type Q2057971
[ANSWER] has genetic association with that nucleic acid sequence
['Q18026244', 'P2293', {'concept': 'Q2057971'}]
SELECT DISTINCT ?m WHERE { resource:Q18026244 property:P2293 ?m . ?m rdf:type ontology:Q2057971 }
obesity
Obesity has genetic association with that nucleic acid sequence
obesity
action filter_type
action find
entity GNAT2
relation genetic association
type health problem
['GNAT2', 'genetic association', {'concept': 'health problem'}]
SELECT DISTINCT ?m WHERE { resource:GNAT2 property:genetic_association ?m . ?m rdf:type ontology:health_problem }
[]
Verification (Boolean) (All)
Verification|3 entities, 2 direct, 2(direct) are query entities, subject is indirect
Q12174 Q24593073 Q23206244
P2293
Q863908
USER
Is that health problem herditarily associated with LOC105496373 and ssDNA-specific exonuclease RecJ    CD630_27460 ?
(Q12174,P2293,Q24593073) (Q12174,P2293,Q23206244)
action is_in
entity Q12174
action intersection
action find_reverse
entity Q24593073
relation P2293
action find_reverse
entity Q23206244
relation P2293
['Q12174', 'P2293', 'Q24593073'] ['Q12174', 'P2293', 'Q23206244']
ASK WHERE { resource:Q12174 property:P2293 resource:Q24593073 . resource:Q12174 property:P2293 resource:Q23206244 }
obesity LOC105496373 ssDNA-specific exonuclease RecJ    CD630_27460
action is_in
entity obesity
action intersection
action find_reverse
entity LOC105496373
relation genetic association
action find_reverse
entity ssDNA-specific exonuclease RecJ    CD630_27460
relation genetic association
['obesity', 'genetic association', 'LOC105496373'] ['obesity', 'genetic association', 'ssDNA-specific exonuclease RecJ    CD630_27460']
ASK WHERE { resource:obesity property:genetic_association resource:LOC105496373 . resource:obesity property:genetic_association resource:ssDNA-specific_exonuclease_RecJ____CD630_27460 }
[]
nucleic acid sequence
SYSTEM
NO
(Q12174,P2293,Q24593073) (Q12174,P2293,Q23206244)
action is_in
entity Q12174
action intersection
action find_reverse
entity Q24593073
relation P2293
action find_reverse
entity Q23206244
relation P2293
[ANSWER]
['Q12174', 'P2293', 'Q24593073'] ['Q12174', 'P2293', 'Q23206244']
ASK WHERE { resource:Q12174 property:P2293 resource:Q24593073 . resource:Q12174 property:P2293 resource:Q23206244 }
No
action is_in
entity obesity
action intersection
action find_reverse
entity LOC105496373
relation genetic association
action find_reverse
entity ssDNA-specific exonuclease RecJ    CD630_27460
relation genetic association
['obesity', 'genetic association', 'LOC105496373'] ['obesity', 'genetic association', 'ssDNA-specific exonuclease RecJ    CD630_27460']
ASK WHERE { resource:obesity property:genetic_association resource:LOC105496373 . resource:obesity property:genetic_association resource:ssDNA-specific_exonuclease_RecJ____CD630_27460 }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Mult. entity type
Q18026244 Q18047033
P684
Q863908
USER
How many nucleic acid sequences are GNAT2 or TRIM11 an orthlogous gene of ?
(c(Q863908),P684,Q18026244) (c(Q863908),P684,Q18047033)
action count
action union
action filter_type
action find_reverse
entity Q18026244
relation P684
type Q863908
action filter_type
action find_reverse
entity Q18047033
relation P684
type Q863908
[{'concept': 'Q863908'}, 'P684', 'Q18026244'] [{'concept': 'Q863908'}, 'P684', 'Q18047033']
SELECT DISTINCT ( COUNT ( ?q ) AS ?r ) WHERE { { ?q property:P684 resource:Q18026244 . ?q rdf:type ontology:Q863908 } UNION { ?q property:P684 resource:Q18047033 . ?q rdf:type ontology:Q863908 } }
GNAT2 TRIM11
action count
action union
action filter_type
action find_reverse
entity GNAT2
relation ortholog
type nucleic acid sequence
action filter_type
action find_reverse
entity TRIM11
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'GNAT2'] [{'concept': 'nucleic acid sequence'}, 'ortholog', 'TRIM11']
SELECT DISTINCT ( COUNT ( ?q ) AS ?r ) WHERE { { ?q property:ortholog resource:GNAT2 . ?q rdf:type ontology:nucleic_acid_sequence } UNION { ?q property:ortholog resource:TRIM11 . ?q rdf:type ontology:nucleic_acid_sequence } }
[]
nucleic acid sequence
SYSTEM
2
Q18250879 Q18270345
(c(Q863908),P684,Q18026244) (c(Q863908),P684,Q18047033)
action count
action union
action filter_type
action find_reverse
entity Q18026244
relation P684
type Q863908
action filter_type
action find_reverse
entity Q18047033
relation P684
type Q863908
[ANSWER]
[{'concept': 'Q863908'}, 'P684', 'Q18026244'] [{'concept': 'Q863908'}, 'P684', 'Q18047033']
SELECT DISTINCT ( COUNT ( ?q ) AS ?r ) WHERE { { ?q property:P684 resource:Q18026244 . ?q rdf:type ontology:Q863908 } UNION { ?q property:P684 resource:Q18047033 . ?q rdf:type ontology:Q863908 } }
Gnat2 Trim11
2
action count
action union
action filter_type
action find_reverse
entity GNAT2
relation ortholog
type nucleic acid sequence
action filter_type
action find_reverse
entity TRIM11
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'GNAT2'] [{'concept': 'nucleic acid sequence'}, 'ortholog', 'TRIM11']
SELECT DISTINCT ( COUNT ( ?q ) AS ?r ) WHERE { { ?q property:ortholog resource:GNAT2 . ?q rdf:type ontology:nucleic_acid_sequence } UNION { ?q property:ortholog resource:TRIM11 . ?q rdf:type ontology:nucleic_acid_sequence } }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23403415 Q18026244
P688
Q181394
USER
Which nutrients are encoded by GNAT2 or CshA-like fibrillar surface protein B    SSA_0905 ?
OR((Q18026244,P688,c(Q181394)), (Q23403415,P688,c(Q181394)))
action filter_type
action union
action find
entity Q18026244
relation P688
action find
entity Q23403415
relation P688
type Q181394
{'OR': [['Q18026244', 'P688', {'concept': 'Q181394'}], ['Q23403415', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?p WHERE { { { resource:Q18026244 property:P688 ?p } UNION { resource:Q23403415 property:P688 ?p } } . ?p rdf:type ontology:Q181394 }
CshA-like fibrillar surface protein B    SSA_0905 GNAT2
action filter_type
action union
action find
entity GNAT2
relation encodes
action find
entity CshA-like fibrillar surface protein B    SSA_0905
relation encodes
type nutrient
{'OR': [['GNAT2', 'encodes', {'concept': 'nutrient'}], ['CshA-like fibrillar surface protein B    SSA_0905', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?p WHERE { { { resource:GNAT2 property:encodes ?p } UNION { resource:CshA-like_fibrillar_surface_protein_B____SSA_0905 property:encodes ?p } } . ?p rdf:type ontology:nutrient }
[]
nutrient
Q23487551 Q21103236
SYSTEM
CshA-like fibrillar surface protein B    SSA_0905, Guanine nucleotide-binding protein G(t) subunit alpha-2
Q23487551 Q21103236
OR((Q18026244,P688,c(Q181394)), (Q23403415,P688,c(Q181394)))
action filter_type
action union
action find
entity Q18026244
relation P688
action find
entity Q23403415
relation P688
type Q181394
[ANSWERS]
{'OR': [['Q18026244', 'P688', {'concept': 'Q181394'}], ['Q23403415', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?p WHERE { { { resource:Q18026244 property:P688 ?p } UNION { resource:Q23403415 property:P688 ?p } } . ?p rdf:type ontology:Q181394 }
CshA-like fibrillar surface protein B    SSA_0905 Guanine nucleotide-binding protein G(t) subunit alpha-2
CshA-like fibrillar surface protein B SSA 0905 and Guanine nucleotide-binding protein G(t) subunit alpha-2 are encoded by GNAT2 or CshA-like fibrillar surface protein B SSA_0905
CshA-like fibrillar surface protein B    SSA_0905 Guanine nucleotide-binding protein G(t) subunit alpha-2
action filter_type
action union
action find
entity GNAT2
relation encodes
action find
entity CshA-like fibrillar surface protein B    SSA_0905
relation encodes
type nutrient
{'OR': [['GNAT2', 'encodes', {'concept': 'nutrient'}], ['CshA-like fibrillar surface protein B    SSA_0905', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?p WHERE { { { resource:GNAT2 property:encodes ?p } UNION { resource:CshA-like_fibrillar_surface_protein_B____SSA_0905 property:encodes ?p } } . ?p rdf:type ontology:nutrient }
[]