Simple Question (Direct)
Simple Question
Q24135261
P703
Q631147
USER
Which taxon does Holliday junction DNA helicase RuvA    ECL_01437 belong to ?
(Q24135261,P703,c(Q631147))
action filter_type
action find
entity Q24135261
relation P703
type Q631147
['Q24135261', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?v WHERE { resource:Q24135261 property:P703 ?v . ?v rdf:type ontology:Q631147 }
Holliday junction DNA helicase RuvA    ECL_01437
action filter_type
action find
entity Holliday junction DNA helicase RuvA    ECL_01437
relation found in taxon
type infraspecific name
['Holliday junction DNA helicase RuvA    ECL_01437', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?v WHERE { resource:Holliday_junction_DNA_helicase_RuvA____ECL_01437 property:found_in_taxon ?v . ?v rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102928
SYSTEM
Enterobacter cloacae subsp. cloacae ATCC 13047
Q21102928
(Q24135261,P703,c(Q631147))
action filter_type
action find
entity Q24135261
relation P703
type Q631147
Holliday junction DNA helicase RuvA ECL _01437 belongs to [ANSWER]
['Q24135261', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?v WHERE { resource:Q24135261 property:P703 ?v . ?v rdf:type ontology:Q631147 }
Enterobacter cloacae subsp. cloacae ATCC 13047
Holliday junction DNA helicase RuvA ECL _01437 belongs to Enterobacter cloacae subsp. cloacae ATCC 13047
Enterobacter cloacae subsp. cloacae ATCC 13047
action filter_type
action find
entity Holliday junction DNA helicase RuvA    ECL_01437
relation found in taxon
type infraspecific name
['Holliday junction DNA helicase RuvA    ECL_01437', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?v WHERE { resource:Holliday_junction_DNA_helicase_RuvA____ECL_01437 property:found_in_taxon ?v . ?v rdf:type ontology:infraspecific_name }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q24119517
P688
Q863908
USER
Which nucleic acid sequence encodes UDP-N-acetylglucosamine synthesis bifunctional protein    BN117_4363 ?
(c(Q863908),P688,Q24119517)
action filter_type
action find_reverse
entity Q24119517
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q24119517']
SELECT DISTINCT ?t WHERE { ?t property:P688 resource:Q24119517 . ?t rdf:type ontology:Q863908 }
UDP-N-acetylglucosamine synthesis bifunctional protein    BN117_4363
action filter_type
action find_reverse
entity UDP-N-acetylglucosamine synthesis bifunctional protein    BN117_4363
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'UDP-N-acetylglucosamine synthesis bifunctional protein    BN117_4363']
SELECT DISTINCT ?t WHERE { ?t property:encodes resource:UDP-N-acetylglucosamine_synthesis_bifunctional_protein____BN117_4363 . ?t rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23414210
SYSTEM
UDP-N-acetylglucosamine synthesis bifunctional protein    BN117_4363
Q23414210
(c(Q863908),P688,Q24119517)
action filter_type
action find_reverse
entity Q24119517
relation P688
type Q863908
UDP-N-acetylglucosamine synthesis bifunctional protein BN117 4363 encodes UDP-N-acetylglucosamine synthesis bifunctional protein BN117_4363
[{'concept': 'Q863908'}, 'P688', 'Q24119517']
SELECT DISTINCT ?t WHERE { ?t property:P688 resource:Q24119517 . ?t rdf:type ontology:Q863908 }
UDP-N-acetylglucosamine synthesis bifunctional protein    BN117_4363
UDP-N-acetylglucosamine synthesis bifunctional protein BN117 4363 encodes UDP-N-acetylglucosamine synthesis bifunctional protein BN117_4363
UDP-N-acetylglucosamine synthesis bifunctional protein    BN117_4363
action filter_type
action find_reverse
entity UDP-N-acetylglucosamine synthesis bifunctional protein    BN117_4363
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'UDP-N-acetylglucosamine synthesis bifunctional protein    BN117_4363']
SELECT DISTINCT ?t WHERE { ?t property:encodes resource:UDP-N-acetylglucosamine_synthesis_bifunctional_protein____BN117_4363 . ?t rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q24119517
P702
Q863908
USER
What encodes that nutrient ?
(Q23414210,P702,c(Q863908))
action filter_type
action find
entity Q24119517
relation P702
type Q863908
['Q23414210', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?l WHERE { resource:Q24119517 property:P702 ?l . ?l rdf:type ontology:Q863908 }
UDP-N-acetylglucosamine synthesis bifunctional protein    BN117_4363
action filter_type
action find
entity UDP-N-acetylglucosamine synthesis bifunctional protein    BN117_4363
relation encoded by
type nucleic acid sequence
['UDP-N-acetylglucosamine synthesis bifunctional protein    BN117_4363', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?l WHERE { resource:UDP-N-acetylglucosamine_synthesis_bifunctional_protein____BN117_4363 property:encoded_by ?l . ?l rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23414210
SYSTEM
UDP-N-acetylglucosamine synthesis bifunctional protein    BN117_4363
Q23414210
(Q23414210,P702,c(Q863908))
action filter_type
action find
entity Q24119517
relation P702
type Q863908
UDP-N-acetylglucosamine synthesis bifunctional protein BN117 4363 encodes that nutrient
['Q23414210', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?l WHERE { resource:Q24119517 property:P702 ?l . ?l rdf:type ontology:Q863908 }
UDP-N-acetylglucosamine synthesis bifunctional protein    BN117_4363
UDP-N-acetylglucosamine synthesis bifunctional protein BN117 4363 encodes that nutrient
UDP-N-acetylglucosamine synthesis bifunctional protein    BN117_4363
action filter_type
action find
entity UDP-N-acetylglucosamine synthesis bifunctional protein    BN117_4363
relation encoded by
type nucleic acid sequence
['UDP-N-acetylglucosamine synthesis bifunctional protein    BN117_4363', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?l WHERE { resource:UDP-N-acetylglucosamine_synthesis_bifunctional_protein____BN117_4363 property:encoded_by ?l . ?l rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q23414210 Q24119517
P702
Q181394
USER
Is UDP-N-acetylglucosamine synthesis bifunctional protein    BN117_4363 encoded by that nucleic acid sequence ?
(Q24119517,P702,Q23414210)
action is_in
entity Q23414210
action find
entity Q24119517
relation P702
['Q24119517', 'P702', 'Q23414210']
ASK WHERE { resource:Q24119517 property:P702 resource:Q23414210 }
UDP-N-acetylglucosamine synthesis bifunctional protein    BN117_4363 UDP-N-acetylglucosamine synthesis bifunctional protein    BN117_4363
action is_in
entity UDP-N-acetylglucosamine synthesis bifunctional protein    BN117_4363
action find
entity UDP-N-acetylglucosamine synthesis bifunctional protein    BN117_4363
relation encoded by
['UDP-N-acetylglucosamine synthesis bifunctional protein    BN117_4363', 'encoded by', 'UDP-N-acetylglucosamine synthesis bifunctional protein    BN117_4363']
ASK WHERE { resource:UDP-N-acetylglucosamine_synthesis_bifunctional_protein____BN117_4363 property:encoded_by resource:UDP-N-acetylglucosamine_synthesis_bifunctional_protein____BN117_4363 }
[]
nutrient
SYSTEM
YES
(Q24119517,P702,Q23414210)
action is_in
entity Q23414210
action find
entity Q24119517
relation P702
[ANSWER]
['Q24119517', 'P702', 'Q23414210']
ASK WHERE { resource:Q24119517 property:P702 resource:Q23414210 }
Yes
action is_in
entity UDP-N-acetylglucosamine synthesis bifunctional protein    BN117_4363
action find
entity UDP-N-acetylglucosamine synthesis bifunctional protein    BN117_4363
relation encoded by
['UDP-N-acetylglucosamine synthesis bifunctional protein    BN117_4363', 'encoded by', 'UDP-N-acetylglucosamine synthesis bifunctional protein    BN117_4363']
ASK WHERE { resource:UDP-N-acetylglucosamine_synthesis_bifunctional_protein____BN117_4363 property:encoded_by resource:UDP-N-acetylglucosamine_synthesis_bifunctional_protein____BN117_4363 }
[]
Verification (Boolean) (All)
Verification|3 entities, all direct, 2 are query entities
Q24135261 Q23294748 Q23147471
P702
Q863908
USER
Is Holliday junction DNA helicase RuvA    ECL_01437 encoded by regulatory protein    SCO0868 and hypothetical protein    Psyr_2750 ?
(Q24135261,P702,Q23294748) (Q24135261,P702,Q23147471)
action is_in
entity Q24135261
action intersection
action find_reverse
entity Q23294748
relation P702
action find_reverse
entity Q23147471
relation P702
['Q24135261', 'P702', 'Q23294748'] ['Q24135261', 'P702', 'Q23147471']
ASK WHERE { resource:Q24135261 property:P702 resource:Q23147471 . resource:Q24135261 property:P702 resource:Q23294748 }
Holliday junction DNA helicase RuvA    ECL_01437 regulatory protein    SCO0868 hypothetical protein    Psyr_2750
action is_in
entity Holliday junction DNA helicase RuvA    ECL_01437
action intersection
action find_reverse
entity regulatory protein    SCO0868
relation encoded by
action find_reverse
entity hypothetical protein    Psyr_2750
relation encoded by
['Holliday junction DNA helicase RuvA    ECL_01437', 'encoded by', 'regulatory protein    SCO0868'] ['Holliday junction DNA helicase RuvA    ECL_01437', 'encoded by', 'hypothetical protein    Psyr_2750']
ASK WHERE { resource:Holliday_junction_DNA_helicase_RuvA____ECL_01437 property:encoded_by resource:hypothetical_protein____Psyr_2750 . resource:Holliday_junction_DNA_helicase_RuvA____ECL_01437 property:encoded_by resource:regulatory_protein____SCO0868 }
[]
nucleic acid sequence
SYSTEM
NO
(Q24135261,P702,Q23294748) (Q24135261,P702,Q23147471)
action is_in
entity Q24135261
action intersection
action find_reverse
entity Q23294748
relation P702
action find_reverse
entity Q23147471
relation P702
[ANSWER]
['Q24135261', 'P702', 'Q23294748'] ['Q24135261', 'P702', 'Q23147471']
ASK WHERE { resource:Q24135261 property:P702 resource:Q23147471 . resource:Q24135261 property:P702 resource:Q23294748 }
No
action is_in
entity Holliday junction DNA helicase RuvA    ECL_01437
action intersection
action find_reverse
entity regulatory protein    SCO0868
relation encoded by
action find_reverse
entity hypothetical protein    Psyr_2750
relation encoded by
['Holliday junction DNA helicase RuvA    ECL_01437', 'encoded by', 'regulatory protein    SCO0868'] ['Holliday junction DNA helicase RuvA    ECL_01437', 'encoded by', 'hypothetical protein    Psyr_2750']
ASK WHERE { resource:Holliday_junction_DNA_helicase_RuvA____ECL_01437 property:encoded_by resource:hypothetical_protein____Psyr_2750 . resource:Holliday_junction_DNA_helicase_RuvA____ECL_01437 property:encoded_by resource:regulatory_protein____SCO0868 }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q23414210 Q21494978
P688
Q181394
USER
Is Coiled-coil domain-containing protein 39 encoded by UDP-N-acetylglucosamine synthesis bifunctional protein    BN117_4363 ?
(Q23414210,P688,Q21494978)
action is_in
entity Q21494978
action find
entity Q23414210
relation P688
['Q23414210', 'P688', 'Q21494978']
ASK WHERE { resource:Q23414210 property:P688 resource:Q21494978 }
UDP-N-acetylglucosamine synthesis bifunctional protein    BN117_4363 Coiled-coil domain-containing protein 39
action is_in
entity Coiled-coil domain-containing protein 39
action find
entity UDP-N-acetylglucosamine synthesis bifunctional protein    BN117_4363
relation encodes
['UDP-N-acetylglucosamine synthesis bifunctional protein    BN117_4363', 'encodes', 'Coiled-coil domain-containing protein 39']
ASK WHERE { resource:UDP-N-acetylglucosamine_synthesis_bifunctional_protein____BN117_4363 property:encodes resource:Coiled-coil_domain-containing_protein_39 }
[]
nutrient
SYSTEM
NO
(Q23414210,P688,Q21494978)
action is_in
entity Q21494978
action find
entity Q23414210
relation P688
[ANSWER]
['Q23414210', 'P688', 'Q21494978']
ASK WHERE { resource:Q23414210 property:P688 resource:Q21494978 }
No
action is_in
entity Coiled-coil domain-containing protein 39
action find
entity UDP-N-acetylglucosamine synthesis bifunctional protein    BN117_4363
relation encodes
['UDP-N-acetylglucosamine synthesis bifunctional protein    BN117_4363', 'encodes', 'Coiled-coil domain-containing protein 39']
ASK WHERE { resource:UDP-N-acetylglucosamine_synthesis_bifunctional_protein____BN117_4363 property:encodes resource:Coiled-coil_domain-containing_protein_39 }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Mult. entity type
Q23414210 Q18251303
P702
Q181394
USER
How many nutrients do UDP-N-acetylglucosamine synthesis bifunctional protein    BN117_4363 or Hpgd encode ?
(c(Q181394),P702,Q23414210) (c(Q181394),P702,Q18251303)
action count
action union
action filter_type
action find_reverse
entity Q23414210
relation P702
type Q181394
action filter_type
action find_reverse
entity Q18251303
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q23414210'] [{'concept': 'Q181394'}, 'P702', 'Q18251303']
SELECT DISTINCT ( COUNT ( ?j ) AS ?t ) WHERE { { ?j property:P702 resource:Q23414210 . ?j rdf:type ontology:Q181394 } UNION { ?j property:P702 resource:Q18251303 . ?j rdf:type ontology:Q181394 } }
UDP-N-acetylglucosamine synthesis bifunctional protein    BN117_4363 Hpgd
action count
action union
action filter_type
action find_reverse
entity UDP-N-acetylglucosamine synthesis bifunctional protein    BN117_4363
relation encoded by
type nutrient
action filter_type
action find_reverse
entity Hpgd
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'UDP-N-acetylglucosamine synthesis bifunctional protein    BN117_4363'] [{'concept': 'nutrient'}, 'encoded by', 'Hpgd']
SELECT DISTINCT ( COUNT ( ?j ) AS ?t ) WHERE { { ?j property:encoded_by resource:UDP-N-acetylglucosamine_synthesis_bifunctional_protein____BN117_4363 . ?j rdf:type ontology:nutrient } UNION { ?j property:encoded_by resource:Hpgd . ?j rdf:type ontology:nutrient } }
[]
nutrient
SYSTEM
2
Q24119517 Q21988899
(c(Q181394),P702,Q23414210) (c(Q181394),P702,Q18251303)
action count
action union
action filter_type
action find_reverse
entity Q23414210
relation P702
type Q181394
action filter_type
action find_reverse
entity Q18251303
relation P702
type Q181394
[ANSWER]
[{'concept': 'Q181394'}, 'P702', 'Q23414210'] [{'concept': 'Q181394'}, 'P702', 'Q18251303']
SELECT DISTINCT ( COUNT ( ?j ) AS ?t ) WHERE { { ?j property:P702 resource:Q23414210 . ?j rdf:type ontology:Q181394 } UNION { ?j property:P702 resource:Q18251303 . ?j rdf:type ontology:Q181394 } }
UDP-N-acetylglucosamine synthesis bifunctional protein    BN117_4363 15-hydroxyprostaglandin dehydrogenase [NAD(+)]
2
action count
action union
action filter_type
action find_reverse
entity UDP-N-acetylglucosamine synthesis bifunctional protein    BN117_4363
relation encoded by
type nutrient
action filter_type
action find_reverse
entity Hpgd
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'UDP-N-acetylglucosamine synthesis bifunctional protein    BN117_4363'] [{'concept': 'nutrient'}, 'encoded by', 'Hpgd']
SELECT DISTINCT ( COUNT ( ?j ) AS ?t ) WHERE { { ?j property:encoded_by resource:UDP-N-acetylglucosamine_synthesis_bifunctional_protein____BN117_4363 . ?j rdf:type ontology:nutrient } UNION { ?j property:encoded_by resource:Hpgd . ?j rdf:type ontology:nutrient } }
[]
Quantitative Reasoning (All)
Quantitative|Min/Max|Mult. entity type
P129
Q79529 Q8386 Q181394
USER
Which nutrients can communicate with max number of chemical substances and drugs ?
(c(Q181394),P129,c(Q79529)|c(Q8386))
action argmax
action union
action find_tuple_counts
relation P129
type Q181394
type Q79529
action find_tuple_counts
relation P129
type Q181394
type Q8386
[{'concept': 'Q181394'}, 'P129', [{'concept': 'Q79529'}, {'concept': 'Q8386'}]]
SELECT DISTINCT ?b WHERE { { SELECT DISTINCT ( MAX ( ?d ) AS ?j ) { SELECT DISTINCT ( COUNT ( ?n ) AS ?d ) ?o WHERE { { ?o property:P129 ?n . ?o rdf:type ontology:Q181394 . ?n rdf:type ontology:Q79529 } UNION { ?o property:P129 ?n . ?o rdf:type ontology:Q181394 . ?n rdf:type ontology:Q8386 } } GROUP BY ?o } } . { SELECT DISTINCT ( COUNT ( ?v ) AS ?a ) ?b WHERE { { ?b property:P129 ?v . ?b rdf:type ontology:Q181394 . ?v rdf:type ontology:Q79529 } UNION { ?b property:P129 ?v . ?b rdf:type ontology:Q181394 . ?v rdf:type ontology:Q8386 } } GROUP BY ?b } . FILTER ( ?a = ?j ) }
action argmax
action union
action find_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
action find_tuple_counts
relation physically interacts with
type nutrient
type drug
[{'concept': 'nutrient'}, 'physically interacts with', [{'concept': 'chemical substance'}, {'concept': 'drug'}]]
SELECT DISTINCT ?b WHERE { { SELECT DISTINCT ( MAX ( ?d ) AS ?j ) { SELECT DISTINCT ( COUNT ( ?n ) AS ?d ) ?o WHERE { { ?o property:physically_interacts_with ?n . ?o rdf:type ontology:nutrient . ?n rdf:type ontology:chemical_substance } UNION { ?o property:physically_interacts_with ?n . ?o rdf:type ontology:nutrient . ?n rdf:type ontology:drug } } GROUP BY ?o } } . { SELECT DISTINCT ( COUNT ( ?v ) AS ?a ) ?b WHERE { { ?b property:physically_interacts_with ?v . ?b rdf:type ontology:nutrient . ?v rdf:type ontology:chemical_substance } UNION { ?b property:physically_interacts_with ?v . ?b rdf:type ontology:nutrient . ?v rdf:type ontology:drug } } GROUP BY ?b } . FILTER ( ?a = ?j ) }
[]
chemical substance drug nutrient
Q1949517
SYSTEM
5-hydroxytryptamine receptor 2A
Q1949517
(c(Q181394),P129,c(Q79529)|c(Q8386))
action argmax
action union
action find_tuple_counts
relation P129
type Q181394
type Q79529
action find_tuple_counts
relation P129
type Q181394
type Q8386
[ANSWER] can communicate with max number of chemical substances and drugs
[{'concept': 'Q181394'}, 'P129', [{'concept': 'Q79529'}, {'concept': 'Q8386'}]]
SELECT DISTINCT ?b WHERE { { SELECT DISTINCT ( MAX ( ?d ) AS ?j ) { SELECT DISTINCT ( COUNT ( ?n ) AS ?d ) ?o WHERE { { ?o property:P129 ?n . ?o rdf:type ontology:Q181394 . ?n rdf:type ontology:Q79529 } UNION { ?o property:P129 ?n . ?o rdf:type ontology:Q181394 . ?n rdf:type ontology:Q8386 } } GROUP BY ?o } } . { SELECT DISTINCT ( COUNT ( ?v ) AS ?a ) ?b WHERE { { ?b property:P129 ?v . ?b rdf:type ontology:Q181394 . ?v rdf:type ontology:Q79529 } UNION { ?b property:P129 ?v . ?b rdf:type ontology:Q181394 . ?v rdf:type ontology:Q8386 } } GROUP BY ?b } . FILTER ( ?a = ?j ) }
5-hydroxytryptamine receptor 2A
5-hydroxytryptamine receptor 2A can communicate with max number of chemical substances and drugs
5-hydroxytryptamine receptor 2A
action argmax
action union
action find_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
action find_tuple_counts
relation physically interacts with
type nutrient
type drug
[{'concept': 'nutrient'}, 'physically interacts with', [{'concept': 'chemical substance'}, {'concept': 'drug'}]]
SELECT DISTINCT ?b WHERE { { SELECT DISTINCT ( MAX ( ?d ) AS ?j ) { SELECT DISTINCT ( COUNT ( ?n ) AS ?d ) ?o WHERE { { ?o property:physically_interacts_with ?n . ?o rdf:type ontology:nutrient . ?n rdf:type ontology:chemical_substance } UNION { ?o property:physically_interacts_with ?n . ?o rdf:type ontology:nutrient . ?n rdf:type ontology:drug } } GROUP BY ?o } } . { SELECT DISTINCT ( COUNT ( ?v ) AS ?a ) ?b WHERE { { ?b property:physically_interacts_with ?v . ?b rdf:type ontology:nutrient . ?v rdf:type ontology:chemical_substance } UNION { ?b property:physically_interacts_with ?v . ?b rdf:type ontology:nutrient . ?v rdf:type ontology:drug } } GROUP BY ?b } . FILTER ( ?a = ?j ) }
[]