Simple Question (Direct)
Simple Question
Q27551825
P702
Q863908
USER
What is the gene that encodes Tex1p YNL253W ?
(Q27551825,P702,c(Q863908))
action filter_type
action find
entity Q27551825
relation P702
type Q863908
['Q27551825', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?g WHERE { resource:Q27551825 property:P702 ?g . ?g rdf:type ontology:Q863908 }
Tex1p YNL253W
action filter_type
action find
entity Tex1p YNL253W
relation encoded by
type nucleic acid sequence
['Tex1p YNL253W', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?g WHERE { resource:Tex1p_YNL253W property:encoded_by ?g . ?g rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q27544764
SYSTEM
Tex1p YNL253W
Q27544764
(Q27551825,P702,c(Q863908))
action filter_type
action find
entity Q27551825
relation P702
type Q863908
The gene that encodes Tex 1p YNL253 W is also [ANSWER]
['Q27551825', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?g WHERE { resource:Q27551825 property:P702 ?g . ?g rdf:type ontology:Q863908 }
Tex1p YNL253W
The gene that encodes Tex 1p YNL253 W is also Tex1p YNL253W
Tex1p YNL253W
action filter_type
action find
entity Tex1p YNL253W
relation encoded by
type nucleic acid sequence
['Tex1p YNL253W', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?g WHERE { resource:Tex1p_YNL253W property:encoded_by ?g . ?g rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q27551825
P688
Q863908
USER
Which nucleic acid sequence encodes Tex1p YNL253W ?
(c(Q863908),P688,Q27551825)
action filter_type
action find_reverse
entity Q27551825
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q27551825']
SELECT DISTINCT ?i WHERE { ?i property:P688 resource:Q27551825 . ?i rdf:type ontology:Q863908 }
Tex1p YNL253W
action filter_type
action find_reverse
entity Tex1p YNL253W
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Tex1p YNL253W']
SELECT DISTINCT ?i WHERE { ?i property:encodes resource:Tex1p_YNL253W . ?i rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q27544764
SYSTEM
Tex1p YNL253W
Q27544764
(c(Q863908),P688,Q27551825)
action filter_type
action find_reverse
entity Q27551825
relation P688
type Q863908
[ANSWER] encodes [ANSWER]
[{'concept': 'Q863908'}, 'P688', 'Q27551825']
SELECT DISTINCT ?i WHERE { ?i property:P688 resource:Q27551825 . ?i rdf:type ontology:Q863908 }
Tex1p YNL253W
Tex1p YNL253W encodes Tex1p YNL253W
Tex1p YNL253W
action filter_type
action find_reverse
entity Tex1p YNL253W
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Tex1p YNL253W']
SELECT DISTINCT ?i WHERE { ?i property:encodes resource:Tex1p_YNL253W . ?i rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q27544764
P703
Q631147
USER
Where is that nucleic acid sequence found ?
(Q27544764,P703,c(Q631147))
action filter_type
action find
entity Q27544764
relation P703
type Q631147
['Q27544764', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?s WHERE { resource:Q27544764 property:P703 ?s . ?s rdf:type ontology:Q631147 }
Tex1p YNL253W
action filter_type
action find
entity Tex1p YNL253W
relation found in taxon
type infraspecific name
['Tex1p YNL253W', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?s WHERE { resource:Tex1p_YNL253W property:found_in_taxon ?s . ?s rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q27510868
SYSTEM
Saccharomyces cerevisiae S288c
Q27510868
(Q27544764,P703,c(Q631147))
action filter_type
action find
entity Q27544764
relation P703
type Q631147
That nucleic acid sequence is found in [ANSWER]
['Q27544764', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?s WHERE { resource:Q27544764 property:P703 ?s . ?s rdf:type ontology:Q631147 }
Saccharomyces cerevisiae S288c
That nucleic acid sequence is found in Saccharomyces cerevisiae S288c
Saccharomyces cerevisiae S288c
action filter_type
action find
entity Tex1p YNL253W
relation found in taxon
type infraspecific name
['Tex1p YNL253W', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?s WHERE { resource:Tex1p_YNL253W property:found_in_taxon ?s . ?s rdf:type ontology:infraspecific_name }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation|Incomplete
Q23259703 Q27544764
P703
Q631147
USER
Or hypothetical protein    Mb3063c?
OR((Q27544764,P703,c(Q631147)), (Q23259703,P703,c(Q631147)))
action filter_type
action union
action find
entity Q27544764
relation P703
action find
entity Q23259703
relation P703
type Q631147
{'OR': [['Q27544764', 'P703', {'concept': 'Q631147'}], ['Q23259703', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?r WHERE { { VALUES ( ?t ) { ( resource:Q23259703 ) ( resource:Q27544764 ) } . ?t property:P703 ?r } . ?r rdf:type ontology:Q631147 }
hypothetical protein    Mb3063c Tex1p YNL253W
action filter_type
action union
action find
entity Tex1p YNL253W
relation found in taxon
action find
entity hypothetical protein    Mb3063c
relation found in taxon
type infraspecific name
{'OR': [['Tex1p YNL253W', 'found in taxon', {'concept': 'infraspecific name'}], ['hypothetical protein    Mb3063c', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?r WHERE { { VALUES ( ?t ) { ( resource:hypothetical_protein____Mb3063c ) ( resource:Tex1p_YNL253W ) } . ?t property:found_in_taxon ?r } . ?r rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q27510868 Q21102984
SYSTEM
Saccharomyces cerevisiae S288c, Mycobacterium bovis AF2122/97
Q27510868 Q21102984
OR((Q27544764,P703,c(Q631147)), (Q23259703,P703,c(Q631147)))
action filter_type
action union
action find
entity Q27544764
relation P703
action find
entity Q23259703
relation P703
type Q631147
[ANSWERS]
{'OR': [['Q27544764', 'P703', {'concept': 'Q631147'}], ['Q23259703', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?r WHERE { { VALUES ( ?t ) { ( resource:Q23259703 ) ( resource:Q27544764 ) } . ?t property:P703 ?r } . ?r rdf:type ontology:Q631147 }
Saccharomyces cerevisiae S288c Mycobacterium bovis AF2122/97
Saccharomyces cerevisiae S288c Mycobacterium bovis AF2122/97
action filter_type
action union
action find
entity Tex1p YNL253W
relation found in taxon
action find
entity hypothetical protein    Mb3063c
relation found in taxon
type infraspecific name
{'OR': [['Tex1p YNL253W', 'found in taxon', {'concept': 'infraspecific name'}], ['hypothetical protein    Mb3063c', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?r WHERE { { VALUES ( ?t ) { ( resource:hypothetical_protein____Mb3063c ) ( resource:Tex1p_YNL253W ) } . ?t property:found_in_taxon ?r } . ?r rdf:type ontology:infraspecific_name }
[]
Quantitative Reasoning (All)
Quantitative|Min/Max|Mult. entity type
P129
Q181394 Q8386 Q181394
USER
Which nutrients communicates with max number of nutrients and drugs ?
(c(Q181394),P129,c(Q181394)|c(Q8386))
action argmax
action union
action find_tuple_counts
relation P129
type Q181394
type Q181394
action find_tuple_counts
relation P129
type Q181394
type Q8386
[{'concept': 'Q181394'}, 'P129', [{'concept': 'Q181394'}, {'concept': 'Q8386'}]]
SELECT DISTINCT ?o WHERE { { SELECT DISTINCT ( MAX ( ?y ) AS ?g ) { SELECT DISTINCT ?e ( COUNT ( ?d ) AS ?y ) WHERE { { ?e property:P129 ?d . ?e rdf:type ontology:Q181394 . ?d rdf:type ontology:Q8386 } UNION { ?e property:P129 ?d . ?e rdf:type ontology:Q181394 . ?d rdf:type ontology:Q181394 } } GROUP BY ?e } } . { SELECT DISTINCT ?o ( COUNT ( ?q ) AS ?a ) WHERE { { ?o property:P129 ?q . ?q rdf:type ontology:Q181394 . ?o rdf:type ontology:Q181394 } UNION { ?o property:P129 ?q . ?o rdf:type ontology:Q181394 . ?q rdf:type ontology:Q8386 } } GROUP BY ?o } . FILTER ( ?a = ?g ) }
action argmax
action union
action find_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_tuple_counts
relation physically interacts with
type nutrient
type drug
[{'concept': 'nutrient'}, 'physically interacts with', [{'concept': 'nutrient'}, {'concept': 'drug'}]]
SELECT DISTINCT ?o WHERE { { SELECT DISTINCT ( MAX ( ?y ) AS ?g ) { SELECT DISTINCT ?e ( COUNT ( ?d ) AS ?y ) WHERE { { ?e property:physically_interacts_with ?d . ?e rdf:type ontology:nutrient . ?d rdf:type ontology:drug } UNION { ?e property:physically_interacts_with ?d . ?e rdf:type ontology:nutrient . ?d rdf:type ontology:nutrient } } GROUP BY ?e } } . { SELECT DISTINCT ?o ( COUNT ( ?q ) AS ?a ) WHERE { { ?o property:physically_interacts_with ?q . ?q rdf:type ontology:nutrient . ?o rdf:type ontology:nutrient } UNION { ?o property:physically_interacts_with ?q . ?o rdf:type ontology:nutrient . ?q rdf:type ontology:drug } } GROUP BY ?o } . FILTER ( ?a = ?g ) }
[]
nutrient drug nutrient
Q1949517
SYSTEM
5-hydroxytryptamine receptor 2A
Q1949517
(c(Q181394),P129,c(Q181394)|c(Q8386))
action argmax
action union
action find_tuple_counts
relation P129
type Q181394
type Q181394
action find_tuple_counts
relation P129
type Q181394
type Q8386
[ANSWER] communicates with max number of nutrients and drugs
[{'concept': 'Q181394'}, 'P129', [{'concept': 'Q181394'}, {'concept': 'Q8386'}]]
SELECT DISTINCT ?o WHERE { { SELECT DISTINCT ( MAX ( ?y ) AS ?g ) { SELECT DISTINCT ?e ( COUNT ( ?d ) AS ?y ) WHERE { { ?e property:P129 ?d . ?e rdf:type ontology:Q181394 . ?d rdf:type ontology:Q8386 } UNION { ?e property:P129 ?d . ?e rdf:type ontology:Q181394 . ?d rdf:type ontology:Q181394 } } GROUP BY ?e } } . { SELECT DISTINCT ?o ( COUNT ( ?q ) AS ?a ) WHERE { { ?o property:P129 ?q . ?q rdf:type ontology:Q181394 . ?o rdf:type ontology:Q181394 } UNION { ?o property:P129 ?q . ?o rdf:type ontology:Q181394 . ?q rdf:type ontology:Q8386 } } GROUP BY ?o } . FILTER ( ?a = ?g ) }
5-hydroxytryptamine receptor 2A
5-hydroxytryptamine receptor 2A communicates with max number of nutrients and drugs
5-hydroxytryptamine receptor 2A
action argmax
action union
action find_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_tuple_counts
relation physically interacts with
type nutrient
type drug
[{'concept': 'nutrient'}, 'physically interacts with', [{'concept': 'nutrient'}, {'concept': 'drug'}]]
SELECT DISTINCT ?o WHERE { { SELECT DISTINCT ( MAX ( ?y ) AS ?g ) { SELECT DISTINCT ?e ( COUNT ( ?d ) AS ?y ) WHERE { { ?e property:physically_interacts_with ?d . ?e rdf:type ontology:nutrient . ?d rdf:type ontology:drug } UNION { ?e property:physically_interacts_with ?d . ?e rdf:type ontology:nutrient . ?d rdf:type ontology:nutrient } } GROUP BY ?e } } . { SELECT DISTINCT ?o ( COUNT ( ?q ) AS ?a ) WHERE { { ?o property:physically_interacts_with ?q . ?q rdf:type ontology:nutrient . ?o rdf:type ontology:nutrient } UNION { ?o property:physically_interacts_with ?q . ?o rdf:type ontology:nutrient . ?q rdf:type ontology:drug } } GROUP BY ?o } . FILTER ( ?a = ?g ) }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q1949517 Q205517
P129
Q8386
USER
Does ziprasidone can communicate with that nutrient ?
(Q205517,P129,Q1949517)
action is_in
entity Q205517
action find
entity Q1949517
relation P129
['Q205517', 'P129', 'Q1949517']
ASK WHERE { resource:Q1949517 property:P129 resource:Q205517 }
5-hydroxytryptamine receptor 2A ziprasidone
action is_in
entity ziprasidone
action find
entity 5-hydroxytryptamine receptor 2A
relation physically interacts with
['ziprasidone', 'physically interacts with', '5-hydroxytryptamine receptor 2A']
ASK WHERE { resource:5-hydroxytryptamine_receptor_2A property:physically_interacts_with resource:ziprasidone }
[]
drug
SYSTEM
YES
(Q205517,P129,Q1949517)
action is_in
entity Q205517
action find
entity Q1949517
relation P129
[ANSWER]
['Q205517', 'P129', 'Q1949517']
ASK WHERE { resource:Q1949517 property:P129 resource:Q205517 }
Yes
action is_in
entity ziprasidone
action find
entity 5-hydroxytryptamine receptor 2A
relation physically interacts with
['ziprasidone', 'physically interacts with', '5-hydroxytryptamine receptor 2A']
ASK WHERE { resource:5-hydroxytryptamine_receptor_2A property:physically_interacts_with resource:ziprasidone }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q27544764 Q23553448
P688
Q181394
USER
Is Tex1p YNL253W an encoding of cytidine deaminase    BPSS1959 ?
(Q27544764,P688,Q23553448)
action is_in
entity Q23553448
action find
entity Q27544764
relation P688
['Q27544764', 'P688', 'Q23553448']
ASK WHERE { resource:Q27544764 property:P688 resource:Q23553448 }
Tex1p YNL253W cytidine deaminase    BPSS1959
action is_in
entity cytidine deaminase    BPSS1959
action find
entity Tex1p YNL253W
relation encodes
['Tex1p YNL253W', 'encodes', 'cytidine deaminase    BPSS1959']
ASK WHERE { resource:Tex1p_YNL253W property:encodes resource:cytidine_deaminase____BPSS1959 }
[]
nutrient
SYSTEM
NO
(Q27544764,P688,Q23553448)
action is_in
entity Q23553448
action find
entity Q27544764
relation P688
[ANSWER]
['Q27544764', 'P688', 'Q23553448']
ASK WHERE { resource:Q27544764 property:P688 resource:Q23553448 }
No
action is_in
entity cytidine deaminase    BPSS1959
action find
entity Tex1p YNL253W
relation encodes
['Tex1p YNL253W', 'encodes', 'cytidine deaminase    BPSS1959']
ASK WHERE { resource:Tex1p_YNL253W property:encodes resource:cytidine_deaminase____BPSS1959 }
[]
Verification (Boolean) (All)
Verification|3 entities, all direct, 2 are query entities
Q27551825 Q7802364 Q27510868
P703
Q631147
USER
Does Tex1p YNL253W specy belongs to the taxon Tillandsia 'Pacific Blue' and Saccharomyces cerevisiae S288c ?
(Q27551825,P703,Q7802364) (Q27551825,P703,Q27510868)
action is_in
entity Q27551825
action intersection
action find_reverse
entity Q7802364
relation P703
action find_reverse
entity Q27510868
relation P703
['Q27551825', 'P703', 'Q7802364'] ['Q27551825', 'P703', 'Q27510868']
ASK WHERE { resource:Q27551825 property:P703 resource:Q7802364 . resource:Q27551825 property:P703 resource:Q27510868 }
Tex1p YNL253W Tillandsia 'Pacific Blue' Saccharomyces cerevisiae S288c
action is_in
entity Tex1p YNL253W
action intersection
action find_reverse
entity Tillandsia 'Pacific Blue'
relation found in taxon
action find_reverse
entity Saccharomyces cerevisiae S288c
relation found in taxon
['Tex1p YNL253W', 'found in taxon', "Tillandsia 'Pacific Blue'"] ['Tex1p YNL253W', 'found in taxon', 'Saccharomyces cerevisiae S288c']
ASK WHERE { resource:Tex1p_YNL253W property:found_in_taxon resource:Tillandsia_'Pacific_Blue' . resource:Tex1p_YNL253W property:found_in_taxon resource:Saccharomyces_cerevisiae_S288c }
[]
infraspecific name
SYSTEM
NO and YES respectively
(Q27551825,P703,Q7802364) (Q27551825,P703,Q27510868)
action is_in
entity Q27551825
action intersection
action find_reverse
entity Q7802364
relation P703
action find_reverse
entity Q27510868
relation P703
[ANSWER]
['Q27551825', 'P703', 'Q7802364'] ['Q27551825', 'P703', 'Q27510868']
ASK WHERE { resource:Q27551825 property:P703 resource:Q7802364 . resource:Q27551825 property:P703 resource:Q27510868 }
NO and YES respectively
action is_in
entity Tex1p YNL253W
action intersection
action find_reverse
entity Tillandsia 'Pacific Blue'
relation found in taxon
action find_reverse
entity Saccharomyces cerevisiae S288c
relation found in taxon
['Tex1p YNL253W', 'found in taxon', "Tillandsia 'Pacific Blue'"] ['Tex1p YNL253W', 'found in taxon', 'Saccharomyces cerevisiae S288c']
ASK WHERE { resource:Tex1p_YNL253W property:found_in_taxon resource:Tillandsia_'Pacific_Blue' . resource:Tex1p_YNL253W property:found_in_taxon resource:Saccharomyces_cerevisiae_S288c }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type
Q27551825
P703
Q631147
USER
How many infraspecific names are Tex1p YNL253W a part of ?
(Q27551825,P703,c(Q631147))
action count
action filter_type
action find
entity Q27551825
relation P703
type Q631147
['Q27551825', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ( COUNT ( ?a ) AS ?g ) WHERE { resource:Q27551825 property:P703 ?a . ?a rdf:type ontology:Q631147 }
Tex1p YNL253W
action count
action filter_type
action find
entity Tex1p YNL253W
relation found in taxon
type infraspecific name
['Tex1p YNL253W', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ( COUNT ( ?a ) AS ?g ) WHERE { resource:Tex1p_YNL253W property:found_in_taxon ?a . ?a rdf:type ontology:infraspecific_name }
[]
infraspecific name
SYSTEM
1
Q27510868
(Q27551825,P703,c(Q631147))
action count
action filter_type
action find
entity Q27551825
relation P703
type Q631147
[ANSWER]
['Q27551825', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ( COUNT ( ?a ) AS ?g ) WHERE { resource:Q27551825 property:P703 ?a . ?a rdf:type ontology:Q631147 }
Saccharomyces cerevisiae S288c
1
action count
action filter_type
action find
entity Tex1p YNL253W
relation found in taxon
type infraspecific name
['Tex1p YNL253W', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ( COUNT ( ?a ) AS ?g ) WHERE { resource:Tex1p_YNL253W property:found_in_taxon ?a . ?a rdf:type ontology:infraspecific_name }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type|Incomplete
Q23322999
P703
Q631147
USER
And what about hypothetical protein    NGR_b16820?
(Q23322999,P703,c(Q631147))
action count
action filter_type
action find
entity Q23322999
relation P703
type Q631147
['Q23322999', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ( COUNT ( ?c ) AS ?j ) WHERE { resource:Q23322999 property:P703 ?c . ?c rdf:type ontology:Q631147 }
hypothetical protein    NGR_b16820
action count
action filter_type
action find
entity hypothetical protein    NGR_b16820
relation found in taxon
type infraspecific name
['hypothetical protein    NGR_b16820', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ( COUNT ( ?c ) AS ?j ) WHERE { resource:hypothetical_protein____NGR_b16820 property:found_in_taxon ?c . ?c rdf:type ontology:infraspecific_name }
[]
infraspecific name
SYSTEM
1
Q23309229
(Q23322999,P703,c(Q631147))
action count
action filter_type
action find
entity Q23322999
relation P703
type Q631147
[ANSWER]
['Q23322999', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ( COUNT ( ?c ) AS ?j ) WHERE { resource:Q23322999 property:P703 ?c . ?c rdf:type ontology:Q631147 }
Sinorhizobium fredii NGR234
1
action count
action filter_type
action find
entity hypothetical protein    NGR_b16820
relation found in taxon
type infraspecific name
['hypothetical protein    NGR_b16820', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ( COUNT ( ?c ) AS ?j ) WHERE { resource:hypothetical_protein____NGR_b16820 property:found_in_taxon ?c . ?c rdf:type ontology:infraspecific_name }
[]