Simple Question (Direct)
Simple Question
Q23448768
P681
Q15989253
USER
Which is the part that is a component of UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase    RP410 ?
(Q23448768,P681,c(Q15989253))
action filter_type
action find
entity Q23448768
relation P681
type Q15989253
['Q23448768', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?e WHERE { resource:Q23448768 property:P681 ?e . ?e rdf:type ontology:Q15989253 }
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase    RP410
action filter_type
action find
entity UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase    RP410
relation cell component
type part
['UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase    RP410', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?e WHERE { resource:UDP-N-acetylmuramoyl-L-alanyl-D-glutamate_synthetase____RP410 property:cell_component ?e . ?e rdf:type ontology:part }
[]
part
Q79899
SYSTEM
cytoplasm
Q79899
(Q23448768,P681,c(Q15989253))
action filter_type
action find
entity Q23448768
relation P681
type Q15989253
[ANSWER] is the part that is a component of UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase RP410
['Q23448768', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?e WHERE { resource:Q23448768 property:P681 ?e . ?e rdf:type ontology:Q15989253 }
cytoplasm
Cytoplasm is the part that is a component of UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase RP410
cytoplasm
action filter_type
action find
entity UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase    RP410
relation cell component
type part
['UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase    RP410', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?e WHERE { resource:UDP-N-acetylmuramoyl-L-alanyl-D-glutamate_synthetase____RP410 property:cell_component ?e . ?e rdf:type ontology:part }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23448768
P682
Q2996394
USER
What is the biological process that UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase    RP410 is involved in ?
(Q23448768,P682,c(Q2996394))
action filter_type
action find
entity Q23448768
relation P682
type Q2996394
['Q23448768', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?v WHERE { resource:Q23448768 property:P682 ?v . ?v rdf:type ontology:Q2996394 }
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase    RP410
action filter_type
action find
entity UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase    RP410
relation biological process
type biological process
['UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase    RP410', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?v WHERE { resource:UDP-N-acetylmuramoyl-L-alanyl-D-glutamate_synthetase____RP410 property:biological_process ?v . ?v rdf:type ontology:biological_process }
[]
biological process
Q14914008
SYSTEM
biosynthetic process
Q14914008
(Q23448768,P682,c(Q2996394))
action filter_type
action find
entity Q23448768
relation P682
type Q2996394
The biological process that UDP-N-acetylmuramoyl -L -alanyl-D -glutamate synthetase RP410 is involved in is a [ANSWER]
['Q23448768', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?v WHERE { resource:Q23448768 property:P682 ?v . ?v rdf:type ontology:Q2996394 }
biosynthetic process
The biological process that UDP-N-acetylmuramoyl -L -alanyl-D -glutamate synthetase RP410 is involved in is a biosynthetic process
biosynthetic process
action filter_type
action find
entity UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase    RP410
relation biological process
type biological process
['UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase    RP410', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?v WHERE { resource:UDP-N-acetylmuramoyl-L-alanyl-D-glutamate_synthetase____RP410 property:biological_process ?v . ?v rdf:type ontology:biological_process }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23448768
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(c(Q863908),P688,Q14914008)
action filter_type
action find_reverse
entity Q23448768
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q14914008']
SELECT DISTINCT ?k WHERE { ?k property:P688 resource:Q23448768 . ?k rdf:type ontology:Q863908 }
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase    RP410
action filter_type
action find_reverse
entity UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase    RP410
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'biosynthetic process']
SELECT DISTINCT ?k WHERE { ?k property:encodes resource:UDP-N-acetylmuramoyl-L-alanyl-D-glutamate_synthetase____RP410 . ?k rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23381041
SYSTEM
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase    RP410
Q23381041
(c(Q863908),P688,Q14914008)
action filter_type
action find_reverse
entity Q23448768
relation P688
type Q863908
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase RP410 encodes that nutrient
[{'concept': 'Q863908'}, 'P688', 'Q14914008']
SELECT DISTINCT ?k WHERE { ?k property:P688 resource:Q23448768 . ?k rdf:type ontology:Q863908 }
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase    RP410
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase RP410 encodes that nutrient
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase    RP410
action filter_type
action find_reverse
entity UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase    RP410
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'biosynthetic process']
SELECT DISTINCT ?k WHERE { ?k property:encodes resource:UDP-N-acetylmuramoyl-L-alanyl-D-glutamate_synthetase____RP410 . ?k rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23448768
P702
Q863908
USER
Which nucleic acid sequence encodes UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase    RP410 ?
(Q23448768,P702,c(Q863908))
action filter_type
action find
entity Q23448768
relation P702
type Q863908
['Q23448768', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?a WHERE { ?a rdf:type ontology:Q863908 . resource:Q23448768 property:P702 ?a }
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase    RP410
action filter_type
action find
entity UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase    RP410
relation encoded by
type nucleic acid sequence
['UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase    RP410', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?a WHERE { ?a rdf:type ontology:nucleic_acid_sequence . resource:UDP-N-acetylmuramoyl-L-alanyl-D-glutamate_synthetase____RP410 property:encoded_by ?a }
[]
nucleic acid sequence
Q23381041
SYSTEM
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase    RP410
Q23381041
(Q23448768,P702,c(Q863908))
action filter_type
action find
entity Q23448768
relation P702
type Q863908
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase RP410 encodes UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase RP410
['Q23448768', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?a WHERE { ?a rdf:type ontology:Q863908 . resource:Q23448768 property:P702 ?a }
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase    RP410
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase RP410 encodes UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase RP410
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase    RP410
action filter_type
action find
entity UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase    RP410
relation encoded by
type nucleic acid sequence
['UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase    RP410', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?a WHERE { ?a rdf:type ontology:nucleic_acid_sequence . resource:UDP-N-acetylmuramoyl-L-alanyl-D-glutamate_synthetase____RP410 property:encoded_by ?a }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q24272573
Q863908
USER
And how about putative transcriptional regulator    KPHS_p300740?
(Q24272573,P702,c(Q863908))
action filter_type
action find
entity Q24272573
relation P702
type Q863908
['Q24272573', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?k WHERE { ?k rdf:type ontology:Q863908 . resource:Q24272573 property:P702 ?k }
putative transcriptional regulator    KPHS_p300740
action filter_type
action find
entity putative transcriptional regulator    KPHS_p300740
relation encoded by
type nucleic acid sequence
['putative transcriptional regulator    KPHS_p300740', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?k WHERE { ?k rdf:type ontology:nucleic_acid_sequence . resource:putative_transcriptional_regulator____KPHS_p300740 property:encoded_by ?k }
[]
nucleic acid sequence
Q23134920
SYSTEM
putative transcriptional regulator    KPHS_p300740
Q23134920
(Q24272573,P702,c(Q863908))
action filter_type
action find
entity Q24272573
relation P702
type Q863908
[ANSWER]
['Q24272573', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?k WHERE { ?k rdf:type ontology:Q863908 . resource:Q24272573 property:P702 ?k }
putative transcriptional regulator    KPHS_p300740
putative transcriptional regulator    KPHS_p300740
action filter_type
action find
entity putative transcriptional regulator    KPHS_p300740
relation encoded by
type nucleic acid sequence
['putative transcriptional regulator    KPHS_p300740', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?k WHERE { ?k rdf:type ontology:nucleic_acid_sequence . resource:putative_transcriptional_regulator____KPHS_p300740 property:encoded_by ?k }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Mult. entity type
Q23134920 Q18041495
P688
Q181394
USER
How many nutrients are encoded by putative transcriptional regulator    KPHS_p300740 or CCDC40 ?
(Q23134920,P688,c(Q181394)) (Q18041495,P688,c(Q181394))
action count
action union
action filter_type
action find
entity Q23134920
relation P688
type Q181394
action filter_type
action find
entity Q18041495
relation P688
type Q181394
['Q23134920', 'P688', {'concept': 'Q181394'}] ['Q18041495', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?x ) AS ?v ) WHERE { { resource:Q23134920 property:P688 ?x . ?x rdf:type ontology:Q181394 } UNION { resource:Q18041495 property:P688 ?x . ?x rdf:type ontology:Q181394 } }
putative transcriptional regulator    KPHS_p300740 CCDC40
action count
action union
action filter_type
action find
entity putative transcriptional regulator    KPHS_p300740
relation encodes
type nutrient
action filter_type
action find
entity CCDC40
relation encodes
type nutrient
['putative transcriptional regulator    KPHS_p300740', 'encodes', {'concept': 'nutrient'}] ['CCDC40', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?x ) AS ?v ) WHERE { { resource:putative_transcriptional_regulator____KPHS_p300740 property:encodes ?x . ?x rdf:type ontology:nutrient } UNION { resource:CCDC40 property:encodes ?x . ?x rdf:type ontology:nutrient } }
[]
nutrient
SYSTEM
3
Q21148684 Q21112977 Q24272573
(Q23134920,P688,c(Q181394)) (Q18041495,P688,c(Q181394))
action count
action union
action filter_type
action find
entity Q23134920
relation P688
type Q181394
action filter_type
action find
entity Q18041495
relation P688
type Q181394
[ANSWER]
['Q23134920', 'P688', {'concept': 'Q181394'}] ['Q18041495', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?x ) AS ?v ) WHERE { { resource:Q23134920 property:P688 ?x . ?x rdf:type ontology:Q181394 } UNION { resource:Q18041495 property:P688 ?x . ?x rdf:type ontology:Q181394 } }
Coiled-coil domain-containing protein 40 Coiled-coil domain-containing protein 40 putative transcriptional regulator    KPHS_p300740
3
action count
action union
action filter_type
action find
entity putative transcriptional regulator    KPHS_p300740
relation encodes
type nutrient
action filter_type
action find
entity CCDC40
relation encodes
type nutrient
['putative transcriptional regulator    KPHS_p300740', 'encodes', {'concept': 'nutrient'}] ['CCDC40', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?x ) AS ?v ) WHERE { { resource:putative_transcriptional_regulator____KPHS_p300740 property:encodes ?x . ?x rdf:type ontology:nutrient } UNION { resource:CCDC40 property:encodes ?x . ?x rdf:type ontology:nutrient } }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q22312496 Q23448768
P703
Q631147
USER
Which infraspecific names are UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase    RP410 or amidase family protein    PP_2932 a part of ?
OR((Q23448768,P703,c(Q631147)), (Q22312496,P703,c(Q631147)))
action filter_type
action union
action find
entity Q23448768
relation P703
action find
entity Q22312496
relation P703
type Q631147
{'OR': [['Q23448768', 'P703', {'concept': 'Q631147'}], ['Q22312496', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:Q631147 . { { resource:Q23448768 property:P703 ?u } UNION { resource:Q22312496 property:P703 ?u } } }
amidase family protein    PP_2932 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase    RP410
action filter_type
action union
action find
entity UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase    RP410
relation found in taxon
action find
entity amidase family protein    PP_2932
relation found in taxon
type infraspecific name
{'OR': [['UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase    RP410', 'found in taxon', {'concept': 'infraspecific name'}], ['amidase family protein    PP_2932', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:infraspecific_name . { { resource:UDP-N-acetylmuramoyl-L-alanyl-D-glutamate_synthetase____RP410 property:found_in_taxon ?u } UNION { resource:amidase_family_protein____PP_2932 property:found_in_taxon ?u } } }
[]
infraspecific name
Q21102949 Q21079489
SYSTEM
Rickettsia prowazekii str. Madrid E, Pseudomonas putida KT2440
Q21102949 Q21079489
OR((Q23448768,P703,c(Q631147)), (Q22312496,P703,c(Q631147)))
action filter_type
action union
action find
entity Q23448768
relation P703
action find
entity Q22312496
relation P703
type Q631147
[ANSWERS] are UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase RP410 or amidase family protein PP_2932 a part of
{'OR': [['Q23448768', 'P703', {'concept': 'Q631147'}], ['Q22312496', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:Q631147 . { { resource:Q23448768 property:P703 ?u } UNION { resource:Q22312496 property:P703 ?u } } }
Rickettsia prowazekii str. Madrid E Pseudomonas putida KT2440
Rickettsia prowazekii str. Madrid E and Pseudomonas putida KT2440 are UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase RP410 or amidase family protein PP_2932 a part of
Rickettsia prowazekii str. Madrid E Pseudomonas putida KT2440
action filter_type
action union
action find
entity UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase    RP410
relation found in taxon
action find
entity amidase family protein    PP_2932
relation found in taxon
type infraspecific name
{'OR': [['UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase    RP410', 'found in taxon', {'concept': 'infraspecific name'}], ['amidase family protein    PP_2932', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:infraspecific_name . { { resource:UDP-N-acetylmuramoyl-L-alanyl-D-glutamate_synthetase____RP410 property:found_in_taxon ?u } UNION { resource:amidase_family_protein____PP_2932 property:found_in_taxon ?u } } }
[]
Clarification
Comparative|Count over More/Less|Single entity type|Indirect
P703
Q631147 Q863908
USER
How many infraspecific names are around the same number of nucleic acid sequences a part of as that infraspecific name ?
(c(Q863908),P703,c(Q631147))
[{'concept': 'Q863908'}, 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?x ) WHERE { ?z property:P703 ?y . ?z rdf:type ontology:Q863908 . ?y rdf:type ontology:Q631147 }
[{'concept': 'nucleic acid sequence'}, 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?x ) WHERE { ?z property:found_in_taxon ?y . ?z rdf:type ontology:nucleic_acid_sequence . ?y rdf:type ontology:infraspecific_name }
[]
infraspecific name nucleic acid sequence
Comparative|Count over More/Less|Single entity type|Clarification
Q21079489
SYSTEM
Did you mean Pseudomonas putida KT2440 ?
(c(Q863908),P703,c(Q631147))
[ANSWER]
[{'concept': 'Q863908'}, 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?x ) WHERE { ?z property:P703 ?y . ?z rdf:type ontology:Q863908 . ?y rdf:type ontology:Q631147 }
Did you mean Pseudomonas putida KT2440 ?
Pseudomonas putida KT2440
[{'concept': 'nucleic acid sequence'}, 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?x ) WHERE { ?z property:found_in_taxon ?y . ?z rdf:type ontology:nucleic_acid_sequence . ?y rdf:type ontology:infraspecific_name }
[]
Comparative Reasoning (Count) (All)
USER
No, I meant Rickettsia prowazekii str. Madrid E. Could you tell me the answer for that?
(c(Q863908),P703,c(Q631147))
Q21102949
[{'concept': 'Q863908'}, 'P703', {'concept': 'Q631147'}]
[{'concept': 'nucleic acid sequence'}, 'found in taxon', {'concept': 'infraspecific name'}]
[]
SYSTEM
24
Q21102990 Q21102991 Q21102992 Q21102994 Q21102960 Q21102964 Q21102949 Q21102961 Q21102963 Q21102962 Q21102921 Q21102922 Q21102989 Q21102985 Q21102982 Q21102980 Q21102969 Q21102968 Q21102957 Q21102951 Q21102977 Q21064832 Q21102948 Q21102967
(c(Q863908),P703,c(Q631147))
[ANSWER]
[{'concept': 'Q863908'}, 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?x ) WHERE { ?z property:P703 ?y . ?z rdf:type ontology:Q863908 . ?y rdf:type ontology:Q631147 }
Mycoplasma pneumoniae M129 Thermotoga maritima MSB8 Gardnerella vaginalis ATCC 14019 Streptococcus mitis B6 Streptococcus suis BM407 Streptococcus pyogenes M1 GAS Rickettsia prowazekii str. Madrid E Streptococcus mutans UA159 Streptococcus pneumoniae R6 Streptococcus agalactiae 2603V/R Neisseria gonorrhoeae FA 1090 Neisseria meningitidis MC58 Mycoplasma mycoides subsp. mycoides SC str. PG1 Mycobacterium leprae TN Bifidobacterium bifidum PRL2010 Lactobacillus salivarius UCC118 Bacillus anthracis str. Sterne Bacillus anthracis str. Ames Staphylococcus epidermidis ATCC 12228 Fusobacterium nucleatum subsp. nucleatum ATCC 25586 Lactobacillus acidophilus NCFM Coxiella burnetii RSA 493 Haemophilus influenzae Rd KW20 Lactococcus lactis subsp. lactis Il1403
24
[{'concept': 'nucleic acid sequence'}, 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?x ) WHERE { ?z property:found_in_taxon ?y . ?z rdf:type ontology:nucleic_acid_sequence . ?y rdf:type ontology:infraspecific_name }
[]