Simple Question (Direct)
Simple Question
Q23435378
P682
Q1057
USER
Which metabolic process is DNA-binding transcriptional regulator FruR    VCA0519 involved in ?
(Q23435378,P682,c(Q1057))
action filter_type
action find
entity Q23435378
relation P682
type Q1057
['Q23435378', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?z WHERE { resource:Q23435378 property:P682 ?z . ?z rdf:type ontology:Q1057 }
DNA-binding transcriptional regulator FruR    VCA0519
action filter_type
action find
entity DNA-binding transcriptional regulator FruR    VCA0519
relation biological process
type metabolic process
['DNA-binding transcriptional regulator FruR    VCA0519', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?z WHERE { resource:DNA-binding_transcriptional_regulator_FruR____VCA0519 property:biological_process ?z . ?z rdf:type ontology:metabolic_process }
[]
metabolic process
Q14762260
SYSTEM
carbohydrate metabolic process
Q14762260
(Q23435378,P682,c(Q1057))
action filter_type
action find
entity Q23435378
relation P682
type Q1057
The [ANSWER] is DNA-binding transcriptional regulator FruR VCA0519 involved in
['Q23435378', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?z WHERE { resource:Q23435378 property:P682 ?z . ?z rdf:type ontology:Q1057 }
carbohydrate metabolic process
The carbohydrate metabolic process is DNA-binding transcriptional regulator FruR VCA0519 involved in
carbohydrate metabolic process
action filter_type
action find
entity DNA-binding transcriptional regulator FruR    VCA0519
relation biological process
type metabolic process
['DNA-binding transcriptional regulator FruR    VCA0519', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?z WHERE { resource:DNA-binding_transcriptional_regulator_FruR____VCA0519 property:biological_process ?z . ?z rdf:type ontology:metabolic_process }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23435378
P703
Q16521
USER
Which taxon is that nutrient found in ?
(Q14762260,P703,c(Q16521))
action filter_type
action find
entity Q23435378
relation P703
type Q16521
['Q14762260', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?k WHERE { resource:Q23435378 property:P703 ?k . ?k rdf:type ontology:Q16521 }
DNA-binding transcriptional regulator FruR    VCA0519
action filter_type
action find
entity DNA-binding transcriptional regulator FruR    VCA0519
relation found in taxon
type taxon
['carbohydrate metabolic process', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?k WHERE { resource:DNA-binding_transcriptional_regulator_FruR____VCA0519 property:found_in_taxon ?k . ?k rdf:type ontology:taxon }
[]
taxon
Q21102945
SYSTEM
Vibrio cholerae O1 biovar El Tor str. N16961
Q21102945
(Q14762260,P703,c(Q16521))
action filter_type
action find
entity Q23435378
relation P703
type Q16521
That nutrient is found in [ANSWER]
['Q14762260', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?k WHERE { resource:Q23435378 property:P703 ?k . ?k rdf:type ontology:Q16521 }
Vibrio cholerae O1 biovar El Tor str. N16961
That nutrient is found in Vibrio cholerae O1 biovar El Tor str. N16961
Vibrio cholerae O1 biovar El Tor str. N16961
action filter_type
action find
entity DNA-binding transcriptional regulator FruR    VCA0519
relation found in taxon
type taxon
['carbohydrate metabolic process', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?k WHERE { resource:DNA-binding_transcriptional_regulator_FruR____VCA0519 property:found_in_taxon ?k . ?k rdf:type ontology:taxon }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23435378
P702
Q863908
USER
Which nucleic acid sequence encodes DNA-binding transcriptional regulator FruR    VCA0519 ?
(Q23435378,P702,c(Q863908))
action filter_type
action find
entity Q23435378
relation P702
type Q863908
['Q23435378', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?p WHERE { resource:Q23435378 property:P702 ?p . ?p rdf:type ontology:Q863908 }
DNA-binding transcriptional regulator FruR    VCA0519
action filter_type
action find
entity DNA-binding transcriptional regulator FruR    VCA0519
relation encoded by
type nucleic acid sequence
['DNA-binding transcriptional regulator FruR    VCA0519', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?p WHERE { resource:DNA-binding_transcriptional_regulator_FruR____VCA0519 property:encoded_by ?p . ?p rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23131170
SYSTEM
DNA-binding transcriptional regulator FruR    VCA0519
Q23131170
(Q23435378,P702,c(Q863908))
action filter_type
action find
entity Q23435378
relation P702
type Q863908
DNA-binding transcriptional regulator FruR VCA0519 encodes DNA-binding transcriptional regulator FruR VCA0519
['Q23435378', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?p WHERE { resource:Q23435378 property:P702 ?p . ?p rdf:type ontology:Q863908 }
DNA-binding transcriptional regulator FruR    VCA0519
DNA-binding transcriptional regulator FruR VCA0519 encodes DNA-binding transcriptional regulator FruR VCA0519
DNA-binding transcriptional regulator FruR    VCA0519
action filter_type
action find
entity DNA-binding transcriptional regulator FruR    VCA0519
relation encoded by
type nucleic acid sequence
['DNA-binding transcriptional regulator FruR    VCA0519', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?p WHERE { resource:DNA-binding_transcriptional_regulator_FruR____VCA0519 property:encoded_by ?p . ?p rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q23131170 Q23435378
P702
Q181394
USER
Is DNA-binding transcriptional regulator FruR    VCA0519 encoded by that nucleic acid sequence ?
(Q23435378,P702,Q23131170)
action is_in
entity Q23131170
action find
entity Q23435378
relation P702
['Q23435378', 'P702', 'Q23131170']
ASK WHERE { resource:Q23435378 property:P702 resource:Q23131170 }
DNA-binding transcriptional regulator FruR    VCA0519 DNA-binding transcriptional regulator FruR    VCA0519
action is_in
entity DNA-binding transcriptional regulator FruR    VCA0519
action find
entity DNA-binding transcriptional regulator FruR    VCA0519
relation encoded by
['DNA-binding transcriptional regulator FruR    VCA0519', 'encoded by', 'DNA-binding transcriptional regulator FruR    VCA0519']
ASK WHERE { resource:DNA-binding_transcriptional_regulator_FruR____VCA0519 property:encoded_by resource:DNA-binding_transcriptional_regulator_FruR____VCA0519 }
[]
nutrient
SYSTEM
YES
(Q23435378,P702,Q23131170)
action is_in
entity Q23131170
action find
entity Q23435378
relation P702
[ANSWER]
['Q23435378', 'P702', 'Q23131170']
ASK WHERE { resource:Q23435378 property:P702 resource:Q23131170 }
Yes
action is_in
entity DNA-binding transcriptional regulator FruR    VCA0519
action find
entity DNA-binding transcriptional regulator FruR    VCA0519
relation encoded by
['DNA-binding transcriptional regulator FruR    VCA0519', 'encoded by', 'DNA-binding transcriptional regulator FruR    VCA0519']
ASK WHERE { resource:DNA-binding_transcriptional_regulator_FruR____VCA0519 property:encoded_by resource:DNA-binding_transcriptional_regulator_FruR____VCA0519 }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23131170
P688
Q181394
USER
Which nutrient is that nucleic acid sequence an encoding of ?
action filter_type
action find
entity Q23131170
relation P688
type Q181394
SELECT DISTINCT ?d WHERE { resource:Q23131170 property:P688 ?d . ?d rdf:type ontology:Q181394 }
DNA-binding transcriptional regulator FruR    VCA0519
action filter_type
action find
entity DNA-binding transcriptional regulator FruR    VCA0519
relation encodes
type nutrient
SELECT DISTINCT ?d WHERE { resource:DNA-binding_transcriptional_regulator_FruR____VCA0519 property:encodes ?d . ?d rdf:type ontology:nutrient }
[]
nutrient
Q23435378
SYSTEM
DNA-binding transcriptional regulator FruR    VCA0519
Q23435378
action filter_type
action find
entity Q23131170
relation P688
type Q181394
DNA-binding transcriptional regulator FruR VCA0519 is that nucleic acid sequence an encoding of
SELECT DISTINCT ?d WHERE { resource:Q23131170 property:P688 ?d . ?d rdf:type ontology:Q181394 }
DNA-binding transcriptional regulator FruR    VCA0519
DNA-binding transcriptional regulator FruR VCA0519 is that nucleic acid sequence an encoding of
DNA-binding transcriptional regulator FruR    VCA0519
action filter_type
action find
entity DNA-binding transcriptional regulator FruR    VCA0519
relation encodes
type nutrient
SELECT DISTINCT ?d WHERE { resource:DNA-binding_transcriptional_regulator_FruR____VCA0519 property:encodes ?d . ?d rdf:type ontology:nutrient }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type
Q23075791
P702
Q181394
USER
How many nutrients are encoded by very short patch repair protein    EAE_23105 ?
(c(Q181394),P702,Q23075791)
action count
action filter_type
action find_reverse
entity Q23075791
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q23075791']
SELECT DISTINCT ( COUNT ( ?l ) AS ?e ) WHERE { ?l rdf:type ontology:Q181394 . ?l property:P702 resource:Q23075791 }
very short patch repair protein    EAE_23105
action count
action filter_type
action find_reverse
entity very short patch repair protein    EAE_23105
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'very short patch repair protein    EAE_23105']
SELECT DISTINCT ( COUNT ( ?l ) AS ?e ) WHERE { ?l rdf:type ontology:nutrient . ?l property:encoded_by resource:very_short_patch_repair_protein____EAE_23105 }
[]
nutrient
SYSTEM
1
Q24127953
(c(Q181394),P702,Q23075791)
action count
action filter_type
action find_reverse
entity Q23075791
relation P702
type Q181394
[ANSWER]
[{'concept': 'Q181394'}, 'P702', 'Q23075791']
SELECT DISTINCT ( COUNT ( ?l ) AS ?e ) WHERE { ?l rdf:type ontology:Q181394 . ?l property:P702 resource:Q23075791 }
very short patch repair protein    EAE_23105
1
action count
action filter_type
action find_reverse
entity very short patch repair protein    EAE_23105
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'very short patch repair protein    EAE_23105']
SELECT DISTINCT ( COUNT ( ?l ) AS ?e ) WHERE { ?l rdf:type ontology:nutrient . ?l property:encoded_by resource:very_short_patch_repair_protein____EAE_23105 }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type|Incomplete
Q22223357
P702
Q181394
USER
And how about putative multidrug transporter membrane\ATP-binding proteins    ECIAI39_0225?
(c(Q181394),P702,Q22223357)
action count
action filter_type
action find_reverse
entity Q22223357
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q22223357']
SELECT DISTINCT ( COUNT ( ?f ) AS ?b ) WHERE { ?f property:P702 resource:Q22223357 . ?f rdf:type ontology:Q181394 }
putative multidrug transporter membrane\ATP-binding proteins    ECIAI39_0225
action count
action filter_type
action find_reverse
entity putative multidrug transporter membrane\ATP-binding proteins    ECIAI39_0225
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'putative multidrug transporter membrane\\ATP-binding proteins    ECIAI39_0225']
SELECT DISTINCT ( COUNT ( ?f ) AS ?b ) WHERE { ?f property:encoded_by resource:putative_multidrug_transporter_membrane\ATP-binding_proteins____ECIAI39_0225 . ?f rdf:type ontology:nutrient }
[]
nutrient
SYSTEM
1
Q22135817
(c(Q181394),P702,Q22223357)
action count
action filter_type
action find_reverse
entity Q22223357
relation P702
type Q181394
[ANSWER]
[{'concept': 'Q181394'}, 'P702', 'Q22223357']
SELECT DISTINCT ( COUNT ( ?f ) AS ?b ) WHERE { ?f property:P702 resource:Q22223357 . ?f rdf:type ontology:Q181394 }
putative multidrug transporter membrane\ATP-binding proteins    ECIAI39_0225
1
action count
action filter_type
action find_reverse
entity putative multidrug transporter membrane\ATP-binding proteins    ECIAI39_0225
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'putative multidrug transporter membrane\\ATP-binding proteins    ECIAI39_0225']
SELECT DISTINCT ( COUNT ( ?f ) AS ?b ) WHERE { ?f property:encoded_by resource:putative_multidrug_transporter_membrane\ATP-binding_proteins____ECIAI39_0225 . ?f rdf:type ontology:nutrient }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Mult. entity type
Q14762260 Q14904771
P361
Q2996394
USER
How many biological processes are carbohydrate metabolic process or sperm chromatin condensation a portion of ?
(Q14762260,P361,c(Q2996394)) (Q14904771,P361,c(Q2996394))
action count
action union
action filter_type
action find
entity Q14762260
relation P361
type Q2996394
action filter_type
action find
entity Q14904771
relation P361
type Q2996394
['Q14762260', 'P361', {'concept': 'Q2996394'}] ['Q14904771', 'P361', {'concept': 'Q2996394'}]
SELECT DISTINCT ( COUNT ( ?d ) AS ?y ) WHERE { VALUES ( ?x ) { ( resource:Q14762260 ) ( resource:Q14904771 ) } . ?x property:P361 ?d }
carbohydrate metabolic process sperm chromatin condensation
action count
action union
action filter_type
action find
entity carbohydrate metabolic process
relation part of
type biological process
action filter_type
action find
entity sperm chromatin condensation
relation part of
type biological process
['carbohydrate metabolic process', 'part of', {'concept': 'biological process'}] ['sperm chromatin condensation', 'part of', {'concept': 'biological process'}]
SELECT DISTINCT ( COUNT ( ?d ) AS ?y ) WHERE { VALUES ( ?x ) { ( resource:carbohydrate_metabolic_process ) ( resource:sperm_chromatin_condensation ) } . ?x property:part_of ?d }
[]
biological process
SYSTEM
2
Q21106266 Q21104990
(Q14762260,P361,c(Q2996394)) (Q14904771,P361,c(Q2996394))
action count
action union
action filter_type
action find
entity Q14762260
relation P361
type Q2996394
action filter_type
action find
entity Q14904771
relation P361
type Q2996394
[ANSWER]
['Q14762260', 'P361', {'concept': 'Q2996394'}] ['Q14904771', 'P361', {'concept': 'Q2996394'}]
SELECT DISTINCT ( COUNT ( ?d ) AS ?y ) WHERE { VALUES ( ?x ) { ( resource:Q14762260 ) ( resource:Q14904771 ) } . ?x property:P361 ?d }
carbohydrate utilization spermatid nucleus differentiation
2
action count
action union
action filter_type
action find
entity carbohydrate metabolic process
relation part of
type biological process
action filter_type
action find
entity sperm chromatin condensation
relation part of
type biological process
['carbohydrate metabolic process', 'part of', {'concept': 'biological process'}] ['sperm chromatin condensation', 'part of', {'concept': 'biological process'}]
SELECT DISTINCT ( COUNT ( ?d ) AS ?y ) WHERE { VALUES ( ?x ) { ( resource:carbohydrate_metabolic_process ) ( resource:sperm_chromatin_condensation ) } . ?x property:part_of ?d }
[]