Simple Question (Direct)
Simple Question
Q21496030
P680
Q44424
USER
What represents the molecular function of Matrix metalloproteinase-25 ?
(Q21496030,P680,c(Q44424))
action filter_type
action find
entity Q21496030
relation P680
type Q44424
['Q21496030', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?x WHERE { resource:Q21496030 property:P680 ?x . ?x rdf:type ontology:Q44424 }
Matrix metalloproteinase-25
action filter_type
action find
entity Matrix metalloproteinase-25
relation molecular function
type chemical bond
['Matrix metalloproteinase-25', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?x WHERE { resource:Matrix_metalloproteinase-25 property:molecular_function ?x . ?x rdf:type ontology:chemical_bond }
[]
chemical bond
Q14633865 Q13667380 Q14633862
SYSTEM
zinc ion binding, metal ion binding, calcium ion binding
Q14633865 Q13667380 Q14633862
(Q21496030,P680,c(Q44424))
action filter_type
action find
entity Q21496030
relation P680
type Q44424
[ANSWERS] represent the molecular function of Matrix metalloproteinase-25
['Q21496030', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?x WHERE { resource:Q21496030 property:P680 ?x . ?x rdf:type ontology:Q44424 }
zinc ion binding metal ion binding calcium ion binding
Zinc ion binding, metal ion binding and calcium ion binding represent the molecular function of Matrix metalloproteinase-25
zinc ion binding metal ion binding calcium ion binding
action filter_type
action find
entity Matrix metalloproteinase-25
relation molecular function
type chemical bond
['Matrix metalloproteinase-25', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?x WHERE { resource:Matrix_metalloproteinase-25 property:molecular_function ?x . ?x rdf:type ontology:chemical_bond }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21496030
P688
Q863908
USER
What is the nucleic acid sequence that is encoded by Matrix metalloproteinase-25 ?
(c(Q863908),P688,Q21496030)
action filter_type
action find_reverse
entity Q21496030
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q21496030']
SELECT DISTINCT ?a WHERE { ?a property:P688 resource:Q21496030 . ?a rdf:type ontology:Q863908 }
Matrix metalloproteinase-25
action filter_type
action find_reverse
entity Matrix metalloproteinase-25
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Matrix metalloproteinase-25']
SELECT DISTINCT ?a WHERE { ?a property:encodes resource:Matrix_metalloproteinase-25 . ?a rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18298824
SYSTEM
Mmp25
Q18298824
(c(Q863908),P688,Q21496030)
action filter_type
action find_reverse
entity Q21496030
relation P688
type Q863908
The nucleic acid sequence that is encoded by Matrix metalloproteinase-25 is the [ANSWER]
[{'concept': 'Q863908'}, 'P688', 'Q21496030']
SELECT DISTINCT ?a WHERE { ?a property:P688 resource:Q21496030 . ?a rdf:type ontology:Q863908 }
Mmp25
The nucleic acid sequence that is encoded by Matrix metalloproteinase-25 is the Mmp25
Mmp25
action filter_type
action find_reverse
entity Matrix metalloproteinase-25
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Matrix metalloproteinase-25']
SELECT DISTINCT ?a WHERE { ?a property:encodes resource:Matrix_metalloproteinase-25 . ?a rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18298824
P684
Q863908
USER
Which nucleic acid sequence is that one an orthlogous gene of ?
(c(Q863908),P684,Q18298824)
action filter_type
action find
entity Q18298824
relation P684
type Q863908
[{'concept': 'Q863908'}, 'P684', 'Q18298824']
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:Q863908 . resource:Q18298824 property:P684 ?s }
Mmp25
action filter_type
action find
entity Mmp25
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'Mmp25']
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:nucleic_acid_sequence . resource:Mmp25 property:ortholog ?s }
[]
nucleic acid sequence
Q18045648
SYSTEM
MMP25
Q18045648
(c(Q863908),P684,Q18298824)
action filter_type
action find
entity Q18298824
relation P684
type Q863908
[ANSWER] is that one an orthlogous gene of
[{'concept': 'Q863908'}, 'P684', 'Q18298824']
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:Q863908 . resource:Q18298824 property:P684 ?s }
MMP25
MMP25 is that one an orthlogous gene of
MMP25
action filter_type
action find
entity Mmp25
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'Mmp25']
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:nucleic_acid_sequence . resource:Mmp25 property:ortholog ?s }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18045648
P702
Q181394
USER
What gene does that nucleic acid sequence encode ?
(c(Q181394),P702,Q18045648)
action filter_type
action find_reverse
entity Q18045648
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q18045648']
SELECT DISTINCT ?i WHERE { ?i property:P702 resource:Q18045648 . ?i rdf:type ontology:Q181394 }
MMP25
action filter_type
action find_reverse
entity MMP25
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'MMP25']
SELECT DISTINCT ?i WHERE { ?i property:encoded_by resource:MMP25 . ?i rdf:type ontology:nutrient }
[]
nutrient
Q21119457
SYSTEM
Matrix metalloproteinase-25
Q21119457
(c(Q181394),P702,Q18045648)
action filter_type
action find_reverse
entity Q18045648
relation P702
type Q181394
That nucleic acid sequence encodes the [ANSWER]
[{'concept': 'Q181394'}, 'P702', 'Q18045648']
SELECT DISTINCT ?i WHERE { ?i property:P702 resource:Q18045648 . ?i rdf:type ontology:Q181394 }
Matrix metalloproteinase-25
That nucleic acid sequence encodes the Matrix metalloproteinase-25
Matrix metalloproteinase-25
action filter_type
action find_reverse
entity MMP25
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'MMP25']
SELECT DISTINCT ?i WHERE { ?i property:encoded_by resource:MMP25 . ?i rdf:type ontology:nutrient }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q18054299 Q18298824
P688
Q181394
USER
Which nutrients are encoded by Mmp25 or LYPD5 ?
OR((Q18298824,P688,c(Q181394)), (Q18054299,P688,c(Q181394)))
action filter_type
action union
action find
entity Q18298824
relation P688
action find
entity Q18054299
relation P688
type Q181394
{'OR': [['Q18298824', 'P688', {'concept': 'Q181394'}], ['Q18054299', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?f WHERE { { VALUES ( ?w ) { ( resource:Q18298824 ) ( resource:Q18054299 ) } . ?w property:P688 ?f } . ?f rdf:type ontology:Q181394 }
LYPD5 Mmp25
action filter_type
action union
action find
entity Mmp25
relation encodes
action find
entity LYPD5
relation encodes
type nutrient
{'OR': [['Mmp25', 'encodes', {'concept': 'nutrient'}], ['LYPD5', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?f WHERE { { VALUES ( ?w ) { ( resource:Mmp25 ) ( resource:LYPD5 ) } . ?w property:encodes ?f } . ?f rdf:type ontology:nutrient }
[]
nutrient
Q21496030 Q21142941 Q21118667
SYSTEM
Matrix metalloproteinase-25, Ly6/PLAUR domain-containing protein 5, Ly6/PLAUR domain-containing protein 5
Q21496030 Q21142941 Q21118667
OR((Q18298824,P688,c(Q181394)), (Q18054299,P688,c(Q181394)))
action filter_type
action union
action find
entity Q18298824
relation P688
action find
entity Q18054299
relation P688
type Q181394
[ANSWERS] are encoded by Mmp25 or LYPD5
{'OR': [['Q18298824', 'P688', {'concept': 'Q181394'}], ['Q18054299', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?f WHERE { { VALUES ( ?w ) { ( resource:Q18298824 ) ( resource:Q18054299 ) } . ?w property:P688 ?f } . ?f rdf:type ontology:Q181394 }
Matrix metalloproteinase-25 Ly6/PLAUR domain-containing protein 5 Ly6/PLAUR domain-containing protein 5
Matrix metalloproteinase-25, Ly6/PLAUR domain-containing protein 5 and Ly6/PLAUR domain-containing protein 5 are encoded by Mmp25 or LYPD5
Matrix metalloproteinase-25 Ly6/PLAUR domain-containing protein 5 Ly6/PLAUR domain-containing protein 5
action filter_type
action union
action find
entity Mmp25
relation encodes
action find
entity LYPD5
relation encodes
type nutrient
{'OR': [['Mmp25', 'encodes', {'concept': 'nutrient'}], ['LYPD5', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?f WHERE { { VALUES ( ?w ) { ( resource:Mmp25 ) ( resource:LYPD5 ) } . ?w property:encodes ?f } . ?f rdf:type ontology:nutrient }
[]
Quantitative Reasoning (All)
Quantitative|Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q181394 Q181394 Q8386
USER
Which nutrients do exactly 7 nutrients and drugs communicate with ?
(c(Q181394)|c(Q8386),P129,c(Q181394))
action equal
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
value 7
[[{'concept': 'Q181394'}, {'concept': 'Q8386'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?d WHERE { { SELECT DISTINCT ( COUNT ( ?s ) AS ?t ) ?d WHERE { { ?s property:P129 ?d . ?d rdf:type ontology:Q181394 . ?s rdf:type ontology:Q181394 } UNION { ?s property:P129 ?d . ?d rdf:type ontology:Q181394 . ?s rdf:type ontology:Q8386 } } GROUP BY ?d } . FILTER ( ?t = 7 ) }
action equal
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
value 7
[[{'concept': 'nutrient'}, {'concept': 'drug'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?d WHERE { { SELECT DISTINCT ( COUNT ( ?s ) AS ?t ) ?d WHERE { { ?s property:physically_interacts_with ?d . ?d rdf:type ontology:nutrient . ?s rdf:type ontology:nutrient } UNION { ?s property:physically_interacts_with ?d . ?d rdf:type ontology:nutrient . ?s rdf:type ontology:drug } } GROUP BY ?d } . FILTER ( ?t = 7 ) }
[]
nutrient nutrient drug
Q1084878 Q21096394 Q415607
SYSTEM
Peroxisome proliferator-activated receptor gamma, Potassium voltage-gated channel subfamily A member 5, 3-hydroxy-3-methylglutaryl-coenzyme A reductase
Q1084878 Q415607 Q5401857 Q5513985 Q21114578 Q2819188 Q12746120 Q21114582 Q21096394 Q21109359 Q5520260 Q21134814
(c(Q181394)|c(Q8386),P129,c(Q181394))
action equal
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
value 7
[ANSWERS] exactly 7 nutrients and drugs communicate with
[[{'concept': 'Q181394'}, {'concept': 'Q8386'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?d WHERE { { SELECT DISTINCT ( COUNT ( ?s ) AS ?t ) ?d WHERE { { ?s property:P129 ?d . ?d rdf:type ontology:Q181394 . ?s rdf:type ontology:Q181394 } UNION { ?s property:P129 ?d . ?d rdf:type ontology:Q181394 . ?s rdf:type ontology:Q8386 } } GROUP BY ?d } . FILTER ( ?t = 7 ) }
Peroxisome proliferator-activated receptor gamma 3-hydroxy-3-methylglutaryl-coenzyme A reductase Estrogen receptor beta Gonadotropin-releasing hormone receptor Gamma-aminobutyric acid receptor subunit alpha-3 Type-1 angiotensin II receptor Muscarinic acetylcholine receptor M5 Gamma-aminobutyric acid receptor subunit alpha-2 Potassium voltage-gated channel subfamily A member 5 5-hydroxytryptamine receptor 5A Gamma-aminobutyric acid receptor subunit alpha-1 Equilibrative nucleoside transporter 4
Peroxisome proliferator-activated receptor gamma, Potassium voltage-gated channel subfamily A member 5 and 3-hydroxy-3-methylglutaryl-coenzyme A reductase exactly 7 nutrients and drugs communicate with
Peroxisome proliferator-activated receptor gamma Potassium voltage-gated channel subfamily A member 5 3-hydroxy-3-methylglutaryl-coenzyme A reductase
action equal
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
value 7
[[{'concept': 'nutrient'}, {'concept': 'drug'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?d WHERE { { SELECT DISTINCT ( COUNT ( ?s ) AS ?t ) ?d WHERE { { ?s property:physically_interacts_with ?d . ?d rdf:type ontology:nutrient . ?s rdf:type ontology:nutrient } UNION { ?s property:physically_interacts_with ?d . ?d rdf:type ontology:nutrient . ?s rdf:type ontology:drug } } GROUP BY ?d } . FILTER ( ?t = 7 ) }
[]
Simple Question (Direct)
Simple Question|Mult. Entity|Indirect
Q1084878 Q21096394 Q415607
P681
Q15989253
USER
Which are the cell components of Peroxisome proliferator-activated receptor gamma, Potassium voltage-gated channel subfamily A member 5 and 3-hydroxy-3-methylglutaryl-coenzyme A reductase ?
(Q1084878,P681,c(Q15989253)) (Q21096394,P681,c(Q15989253)) (Q415607,P681,c(Q15989253))
action union
action filter_type
action find
entity Q1084878
relation P681
type Q15989253
action filter_type
action find
entity Q21096394
relation P681
type Q15989253
action filter_type
action find
entity Q415607
relation P681
type Q15989253
['Q1084878', 'P681', {'concept': 'Q15989253'}] ['Q21096394', 'P681', {'concept': 'Q15989253'}] ['Q415607', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?j WHERE { ?z property:P681 ?j . VALUES ( ?z ) { ( resource:Q1084878 ) ( resource:Q21096394 ) } }
Peroxisome proliferator-activated receptor gamma Potassium voltage-gated channel subfamily A member 5 3-hydroxy-3-methylglutaryl-coenzyme A reductase
action union
action filter_type
action find
entity Peroxisome proliferator-activated receptor gamma
relation cell component
type part
action filter_type
action find
entity Potassium voltage-gated channel subfamily A member 5
relation cell component
type part
action filter_type
action find
entity 3-hydroxy-3-methylglutaryl-coenzyme A reductase
relation cell component
type part
['Peroxisome proliferator-activated receptor gamma', 'cell component', {'concept': 'part'}] ['Potassium voltage-gated channel subfamily A member 5', 'cell component', {'concept': 'part'}] ['3-hydroxy-3-methylglutaryl-coenzyme A reductase', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?j WHERE { ?z property:cell_component ?j . VALUES ( ?z ) { ( resource:Peroxisome_proliferator-activated_receptor_gamma ) ( resource:Potassium_voltage-gated_channel_subfamily_A_member_5 ) } }
[]
part
Q40260 Q79899 Q14349455
SYSTEM
nucleus, cytoplasm, membrane
Q40260 Q79899 Q14349455 Q14349455
(Q1084878,P681,c(Q15989253)) (Q21096394,P681,c(Q15989253)) (Q415607,P681,c(Q15989253))
action union
action filter_type
action find
entity Q1084878
relation P681
type Q15989253
action filter_type
action find
entity Q21096394
relation P681
type Q15989253
action filter_type
action find
entity Q415607
relation P681
type Q15989253
[ANSWERS] are the cell components of Peroxisome proliferator-activated receptor gamma, Potassium voltage-gated channel subfamily A member 5 and 3-hydroxy-3-methylglutaryl-coenzyme A reductase
['Q1084878', 'P681', {'concept': 'Q15989253'}] ['Q21096394', 'P681', {'concept': 'Q15989253'}] ['Q415607', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?j WHERE { ?z property:P681 ?j . VALUES ( ?z ) { ( resource:Q1084878 ) ( resource:Q21096394 ) } }
nucleus cytoplasm membrane membrane
Nucleus, cytoplasm and membrane are the cell components of Peroxisome proliferator-activated receptor gamma, Potassium voltage-gated channel subfamily A member 5 and 3-hydroxy-3-methylglutaryl-coenzyme A reductase
nucleus cytoplasm membrane
action union
action filter_type
action find
entity Peroxisome proliferator-activated receptor gamma
relation cell component
type part
action filter_type
action find
entity Potassium voltage-gated channel subfamily A member 5
relation cell component
type part
action filter_type
action find
entity 3-hydroxy-3-methylglutaryl-coenzyme A reductase
relation cell component
type part
['Peroxisome proliferator-activated receptor gamma', 'cell component', {'concept': 'part'}] ['Potassium voltage-gated channel subfamily A member 5', 'cell component', {'concept': 'part'}] ['3-hydroxy-3-methylglutaryl-coenzyme A reductase', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?j WHERE { ?z property:cell_component ?j . VALUES ( ?z ) { ( resource:Peroxisome_proliferator-activated_receptor_gamma ) ( resource:Potassium_voltage-gated_channel_subfamily_A_member_5 ) } }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q1084878
P682
Q3249551
USER
Which process is Peroxisome proliferator-activated receptor gamma involved in ?
(Q1084878,P682,c(Q3249551))
action filter_type
action find
entity Q1084878
relation P682
type Q3249551
['Q1084878', 'P682', {'concept': 'Q3249551'}]
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:Q3249551 . resource:Q1084878 property:P682 ?s }
Peroxisome proliferator-activated receptor gamma
action filter_type
action find
entity Peroxisome proliferator-activated receptor gamma
relation biological process
type process
['Peroxisome proliferator-activated receptor gamma', 'biological process', {'concept': 'process'}]
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:process . resource:Peroxisome_proliferator-activated_receptor_gamma property:biological_process ?s }
[]
process
Q14864472
SYSTEM
rhythmic process
Q14864472
(Q1084878,P682,c(Q3249551))
action filter_type
action find
entity Q1084878
relation P682
type Q3249551
Peroxisome proliferator-activated receptor gamma is involved in [ANSWER]
['Q1084878', 'P682', {'concept': 'Q3249551'}]
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:Q3249551 . resource:Q1084878 property:P682 ?s }
rhythmic process
Peroxisome proliferator-activated receptor gamma is involved in rhythmic process
rhythmic process
action filter_type
action find
entity Peroxisome proliferator-activated receptor gamma
relation biological process
type process
['Peroxisome proliferator-activated receptor gamma', 'biological process', {'concept': 'process'}]
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:process . resource:Peroxisome_proliferator-activated_receptor_gamma property:biological_process ?s }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q1084878
P703
Q16521
USER
Where is Peroxisome proliferator-activated receptor gamma found ?
(Q1084878,P703,c(Q16521))
action filter_type
action find
entity Q1084878
relation P703
type Q16521
['Q1084878', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?u WHERE { resource:Q1084878 property:P703 ?u . ?u rdf:type ontology:Q16521 }
Peroxisome proliferator-activated receptor gamma
action filter_type
action find
entity Peroxisome proliferator-activated receptor gamma
relation found in taxon
type taxon
['Peroxisome proliferator-activated receptor gamma', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?u WHERE { resource:Peroxisome_proliferator-activated_receptor_gamma property:found_in_taxon ?u . ?u rdf:type ontology:taxon }
[]
taxon
Q15978631
SYSTEM
Homo sapiens
Q15978631
(Q1084878,P703,c(Q16521))
action filter_type
action find
entity Q1084878
relation P703
type Q16521
Peroxisome proliferator-activated receptor gamma is found in [ANSWER]
['Q1084878', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?u WHERE { resource:Q1084878 property:P703 ?u . ?u rdf:type ontology:Q16521 }
Homo sapiens
Peroxisome proliferator-activated receptor gamma is found in Homo sapiens
Homo sapiens
action filter_type
action find
entity Peroxisome proliferator-activated receptor gamma
relation found in taxon
type taxon
['Peroxisome proliferator-activated receptor gamma', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?u WHERE { resource:Peroxisome_proliferator-activated_receptor_gamma property:found_in_taxon ?u . ?u rdf:type ontology:taxon }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q15978631 Q18071941
P703
Q863908
USER
Does RNA5SP400 specy belongs to the taxon that one ?
(Q18071941,P703,Q15978631)
action is_in
entity Q15978631
action find
entity Q18071941
relation P703
['Q18071941', 'P703', 'Q15978631']
ASK WHERE { resource:Q18071941 property:P703 resource:Q15978631 }
Homo sapiens RNA5SP400
action is_in
entity Homo sapiens
action find
entity RNA5SP400
relation found in taxon
['RNA5SP400', 'found in taxon', 'Homo sapiens']
ASK WHERE { resource:RNA5SP400 property:found_in_taxon resource:Homo_sapiens }
[]
nucleic acid sequence
SYSTEM
YES
(Q18071941,P703,Q15978631)
action is_in
entity Q15978631
action find
entity Q18071941
relation P703
[ANSWER]
['Q18071941', 'P703', 'Q15978631']
ASK WHERE { resource:Q18071941 property:P703 resource:Q15978631 }
Yes
action is_in
entity Homo sapiens
action find
entity RNA5SP400
relation found in taxon
['RNA5SP400', 'found in taxon', 'Homo sapiens']
ASK WHERE { resource:RNA5SP400 property:found_in_taxon resource:Homo_sapiens }
[]