Simple Question (Direct)
Simple Question
Q27548498
P680
Q44424
USER
Which chemical bond represents molecular function of Sut2p YPR009W ?
(Q27548498,P680,c(Q44424))
action filter_type
action find
entity Q27548498
relation P680
type Q44424
['Q27548498', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?c WHERE { resource:Q27548498 property:P680 ?c . ?c rdf:type ontology:Q44424 }
Sut2p YPR009W
action filter_type
action find
entity Sut2p YPR009W
relation molecular function
type chemical bond
['Sut2p YPR009W', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?c WHERE { resource:Sut2p_YPR009W property:molecular_function ?c . ?c rdf:type ontology:chemical_bond }
[]
chemical bond
Q14633865
SYSTEM
zinc ion binding
Q14633865
(Q27548498,P680,c(Q44424))
action filter_type
action find
entity Q27548498
relation P680
type Q44424
The [ANSWER] represents molecular function of Sut2p YPR009W
['Q27548498', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?c WHERE { resource:Q27548498 property:P680 ?c . ?c rdf:type ontology:Q44424 }
zinc ion binding
The zinc ion binding represents molecular function of Sut2p YPR009W
zinc ion binding
action filter_type
action find
entity Sut2p YPR009W
relation molecular function
type chemical bond
['Sut2p YPR009W', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?c WHERE { resource:Sut2p_YPR009W property:molecular_function ?c . ?c rdf:type ontology:chemical_bond }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q27548498
P703
Q631147
USER
Which taxon does that nutrient belong to ?
(Q14633865,P703,c(Q631147))
action filter_type
action find
entity Q27548498
relation P703
type Q631147
['Q14633865', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?y WHERE { resource:Q27548498 property:P703 ?y . ?y rdf:type ontology:Q631147 }
Sut2p YPR009W
action filter_type
action find
entity Sut2p YPR009W
relation found in taxon
type infraspecific name
['zinc ion binding', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?y WHERE { resource:Sut2p_YPR009W property:found_in_taxon ?y . ?y rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q27510868
SYSTEM
Saccharomyces cerevisiae S288c
Q27510868
(Q14633865,P703,c(Q631147))
action filter_type
action find
entity Q27548498
relation P703
type Q631147
That nutrient belongs to [ANSWER]
['Q14633865', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?y WHERE { resource:Q27548498 property:P703 ?y . ?y rdf:type ontology:Q631147 }
Saccharomyces cerevisiae S288c
That nutrient belongs to Saccharomyces cerevisiae S288c
Saccharomyces cerevisiae S288c
action filter_type
action find
entity Sut2p YPR009W
relation found in taxon
type infraspecific name
['zinc ion binding', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?y WHERE { resource:Sut2p_YPR009W property:found_in_taxon ?y . ?y rdf:type ontology:infraspecific_name }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23489770 Q27548498
P702
Q863908
USER
Which nucleic acid sequences are the gene that encodes Sut2p YPR009W or molecular chaperone DnaJ    SSUBM407_0272 ?
OR((Q27548498,P702,c(Q863908)), (Q23489770,P702,c(Q863908)))
action filter_type
action union
action find
entity Q27548498
relation P702
action find
entity Q23489770
relation P702
type Q863908
{'OR': [['Q27548498', 'P702', {'concept': 'Q863908'}], ['Q23489770', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?i WHERE { { { resource:Q27548498 property:P702 ?i } UNION { resource:Q23489770 property:P702 ?i } } . ?i rdf:type ontology:Q863908 }
molecular chaperone DnaJ    SSUBM407_0272 Sut2p YPR009W
action filter_type
action union
action find
entity Sut2p YPR009W
relation encoded by
action find
entity molecular chaperone DnaJ    SSUBM407_0272
relation encoded by
type nucleic acid sequence
{'OR': [['Sut2p YPR009W', 'encoded by', {'concept': 'nucleic acid sequence'}], ['molecular chaperone DnaJ    SSUBM407_0272', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?i WHERE { { { resource:Sut2p_YPR009W property:encoded_by ?i } UNION { resource:molecular_chaperone_DnaJ____SSUBM407_0272 property:encoded_by ?i } } . ?i rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q27541333 Q23216226
SYSTEM
Sut2p YPR009W, molecular chaperone DnaJ    SSUBM407_0272
Q27541333 Q23216226
OR((Q27548498,P702,c(Q863908)), (Q23489770,P702,c(Q863908)))
action filter_type
action union
action find
entity Q27548498
relation P702
action find
entity Q23489770
relation P702
type Q863908
[ANSWERS]
{'OR': [['Q27548498', 'P702', {'concept': 'Q863908'}], ['Q23489770', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?i WHERE { { { resource:Q27548498 property:P702 ?i } UNION { resource:Q23489770 property:P702 ?i } } . ?i rdf:type ontology:Q863908 }
Sut2p YPR009W molecular chaperone DnaJ    SSUBM407_0272
Sut2p YPR009W and molecular chaperone DnaJ SSUBM407 0272 are the gene that encodes Sut2p YPR009W or molecular chaperone DnaJ SSUBM407_0272
Sut2p YPR009W molecular chaperone DnaJ    SSUBM407_0272
action filter_type
action union
action find
entity Sut2p YPR009W
relation encoded by
action find
entity molecular chaperone DnaJ    SSUBM407_0272
relation encoded by
type nucleic acid sequence
{'OR': [['Sut2p YPR009W', 'encoded by', {'concept': 'nucleic acid sequence'}], ['molecular chaperone DnaJ    SSUBM407_0272', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?i WHERE { { { resource:Sut2p_YPR009W property:encoded_by ?i } UNION { resource:molecular_chaperone_DnaJ____SSUBM407_0272 property:encoded_by ?i } } . ?i rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q27548498
P688
Q863908
USER
Which nucleic acid sequence encodes Sut2p YPR009W ?
(c(Q863908),P688,Q27548498)
action filter_type
action find_reverse
entity Q27548498
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q27548498']
SELECT DISTINCT ?r WHERE { ?r property:P688 resource:Q27548498 . ?r rdf:type ontology:Q863908 }
Sut2p YPR009W
action filter_type
action find_reverse
entity Sut2p YPR009W
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Sut2p YPR009W']
SELECT DISTINCT ?r WHERE { ?r property:encodes resource:Sut2p_YPR009W . ?r rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q27541333
SYSTEM
Sut2p YPR009W
Q27541333
(c(Q863908),P688,Q27548498)
action filter_type
action find_reverse
entity Q27548498
relation P688
type Q863908
[ANSWER] encodes [ANSWER]
[{'concept': 'Q863908'}, 'P688', 'Q27548498']
SELECT DISTINCT ?r WHERE { ?r property:P688 resource:Q27548498 . ?r rdf:type ontology:Q863908 }
Sut2p YPR009W
Sut2p YPR009W encodes Sut2p YPR009W
Sut2p YPR009W
action filter_type
action find_reverse
entity Sut2p YPR009W
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Sut2p YPR009W']
SELECT DISTINCT ?r WHERE { ?r property:encodes resource:Sut2p_YPR009W . ?r rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q23257162
Q863908
USER
And what about amidase    Mb2912c?
(Q23257162,P688,c(Q863908))
action filter_type
action find
entity Q23257162
relation P688
type Q863908
['Q23257162', 'P688', {'concept': 'Q863908'}]
SELECT DISTINCT ?s WHERE { resource:Q23257162 property:P688 ?s . ?s rdf:type ontology:Q863908 }
amidase    Mb2912c
action filter_type
action find
entity amidase    Mb2912c
relation encodes
type nucleic acid sequence
['amidase    Mb2912c', 'encodes', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?s WHERE { resource:amidase____Mb2912c property:encodes ?s . ?s rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23257162
SYSTEM
amidase    Mb2912c
Q23257162
(Q23257162,P688,c(Q863908))
action filter_type
action find
entity Q23257162
relation P688
type Q863908
[ANSWER]
['Q23257162', 'P688', {'concept': 'Q863908'}]
SELECT DISTINCT ?s WHERE { resource:Q23257162 property:P688 ?s . ?s rdf:type ontology:Q863908 }
amidase    Mb2912c
amidase    Mb2912c
action filter_type
action find
entity amidase    Mb2912c
relation encodes
type nucleic acid sequence
['amidase    Mb2912c', 'encodes', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?s WHERE { resource:amidase____Mb2912c property:encodes ?s . ?s rdf:type ontology:nucleic_acid_sequence }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q24150109 Q27548498
P702
Q863908
USER
Which nucleic acid sequences encode Sut2p YPR009W or salicylate synthase Irp9    ECUMN_2268 ?
OR((Q27548498,P702,c(Q863908)), (Q24150109,P702,c(Q863908)))
action filter_type
action union
action find
entity Q27548498
relation P702
action find
entity Q24150109
relation P702
type Q863908
{'OR': [['Q27548498', 'P702', {'concept': 'Q863908'}], ['Q24150109', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?x WHERE { { ?m property:P702 ?x . VALUES ( ?m ) { ( resource:Q27548498 ) ( resource:Q24150109 ) } } . ?x rdf:type ontology:Q863908 }
salicylate synthase Irp9    ECUMN_2268 Sut2p YPR009W
action filter_type
action union
action find
entity Sut2p YPR009W
relation encoded by
action find
entity salicylate synthase Irp9    ECUMN_2268
relation encoded by
type nucleic acid sequence
{'OR': [['Sut2p YPR009W', 'encoded by', {'concept': 'nucleic acid sequence'}], ['salicylate synthase Irp9    ECUMN_2268', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?x WHERE { { ?m property:encoded_by ?x . VALUES ( ?m ) { ( resource:Sut2p_YPR009W ) ( resource:salicylate_synthase_Irp9____ECUMN_2268 ) } } . ?x rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q27541333 Q23150931
SYSTEM
Sut2p YPR009W, salicylate synthase Irp9    ECUMN_2268
Q27541333 Q23150931
OR((Q27548498,P702,c(Q863908)), (Q24150109,P702,c(Q863908)))
action filter_type
action union
action find
entity Q27548498
relation P702
action find
entity Q24150109
relation P702
type Q863908
[ANSWERS]
{'OR': [['Q27548498', 'P702', {'concept': 'Q863908'}], ['Q24150109', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?x WHERE { { ?m property:P702 ?x . VALUES ( ?m ) { ( resource:Q27548498 ) ( resource:Q24150109 ) } } . ?x rdf:type ontology:Q863908 }
Sut2p YPR009W salicylate synthase Irp9    ECUMN_2268
Sut2p YPR009W and salicylate synthase Irp9 ECUMN 2268 encode Sut2p YPR009W or salicylate synthase Irp9 ECUMN_2268
Sut2p YPR009W salicylate synthase Irp9    ECUMN_2268
action filter_type
action union
action find
entity Sut2p YPR009W
relation encoded by
action find
entity salicylate synthase Irp9    ECUMN_2268
relation encoded by
type nucleic acid sequence
{'OR': [['Sut2p YPR009W', 'encoded by', {'concept': 'nucleic acid sequence'}], ['salicylate synthase Irp9    ECUMN_2268', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?x WHERE { { ?m property:encoded_by ?x . VALUES ( ?m ) { ( resource:Sut2p_YPR009W ) ( resource:salicylate_synthase_Irp9____ECUMN_2268 ) } } . ?x rdf:type ontology:nucleic_acid_sequence }
[]