Simple Question (Direct)
Simple Question
Q23050738
P680
Q44424
USER
Which chemical bond represents molecular function of protein translocase subunit secA    RSP_1169 ?
(Q23050738,P680,c(Q44424))
action filter_type
action find
entity Q23050738
relation P680
type Q44424
['Q23050738', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?n WHERE { resource:Q23050738 property:P680 ?n . ?n rdf:type ontology:Q44424 }
protein translocase subunit secA    RSP_1169
action filter_type
action find
entity protein translocase subunit secA    RSP_1169
relation molecular function
type chemical bond
['protein translocase subunit secA    RSP_1169', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?n WHERE { resource:protein_translocase_subunit_secA____RSP_1169 property:molecular_function ?n . ?n rdf:type ontology:chemical_bond }
[]
chemical bond
Q13667380
SYSTEM
metal ion binding
Q13667380
(Q23050738,P680,c(Q44424))
action filter_type
action find
entity Q23050738
relation P680
type Q44424
[ANSWER]
['Q23050738', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?n WHERE { resource:Q23050738 property:P680 ?n . ?n rdf:type ontology:Q44424 }
metal ion binding
metal ion binding
action filter_type
action find
entity protein translocase subunit secA    RSP_1169
relation molecular function
type chemical bond
['protein translocase subunit secA    RSP_1169', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?n WHERE { resource:protein_translocase_subunit_secA____RSP_1169 property:molecular_function ?n . ?n rdf:type ontology:chemical_bond }
[]
Comparative Reasoning (All)
Comparative|More/Less|Single entity type
Q21102309
P682
Q2996394 Q181394
USER
Which biological processes are around the same number of nutrients involved in as response to abiotic stimulus ?
(c(Q181394),P682,c(Q2996394))
action approx
action find_reverse_tuple_counts
relation P682
type Q2996394
type Q181394
action count
action filter_type
action find
entity Q21102309
relation P682
type Q2996394
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?j WHERE { { SELECT DISTINCT ?j ( COUNT ( ?t ) AS ?w ) WHERE { ?t property:P682 ?j . ?j rdf:type ontology:Q2996394 . ?t rdf:type ontology:Q181394 } GROUP BY ?j } . { SELECT DISTINCT ( COUNT ( ?v ) AS ?n ) WHERE { ?v rdf:type ontology:Q2996394 . resource:Q21102309 property:P682 ?v } } . FILTER ( ?w = ?n ) }
response to abiotic stimulus
action approx
action find_reverse_tuple_counts
relation biological process
type biological process
type nutrient
action count
action filter_type
action find
entity response to abiotic stimulus
relation biological process
type biological process
[{'concept': 'nutrient'}, 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?j WHERE { { SELECT DISTINCT ?j ( COUNT ( ?t ) AS ?w ) WHERE { ?t property:biological_process ?j . ?j rdf:type ontology:biological_process . ?t rdf:type ontology:nutrient } GROUP BY ?j } . { SELECT DISTINCT ( COUNT ( ?v ) AS ?n ) WHERE { ?v rdf:type ontology:biological_process . resource:response_to_abiotic_stimulus property:biological_process ?v } } . FILTER ( ?w = ?n ) }
[]
biological process nutrient
Q14877671 Q21750263 Q21108938
SYSTEM
cartilage condensation, FtsZ-dependent cytokinesis, preantral ovarian follicle growth
Q22294591 Q21172195 Q14862258 Q21107328 Q22295734 Q14860201 Q288322 Q14902079 Q14863388 Q14904219 Q14911711 Q22271492 Q22271494 Q14864899 Q22294585 Q21122953 Q21104659 Q14860196 Q22294349 Q14860198 Q14864005 Q15325345 Q22269626 Q22269531 Q24459941 Q21438150 Q14897640 Q208353 Q21114926 Q14865609 Q21116174 Q14876119 Q14877671 Q22272257 Q21097540 Q14864099 Q21103041 Q21444598 Q21136671 Q21111890 Q22253821 Q21101822 Q14863654 Q21109007 Q22271536 Q22279989 Q21127160 Q14865397 Q15314382 Q14859996 Q14865659 Q22294730 Q21171796 Q14331109 Q21149516 Q21130714 Q2663023 Q21120908 Q189159 Q22271501 Q22281166 Q22299432 Q14908045 Q14863467 Q21105147 Q21123910 Q15320925 Q163261 Q22298156 Q22271697 Q22269715 Q21119405 Q22297692 Q21130764 Q21750263 Q21762806 Q333666 Q21418091 Q14864443 Q14820875 Q21124921 Q21106668 Q14904764 Q21104990 Q14863664 Q22250139 Q14863667 Q21108563 Q21111494 Q14914540 Q17304930 Q21758676 Q22284328 Q21108938 Q21106266 Q14864210 Q14907898 Q21106018 Q22271479 Q22272219 Q14904772 Q14904771 Q14819471 Q14912956 Q21108839 Q22279704 Q14863453 Q14882364 Q14819856 Q21104832 Q21102309 Q22289134 Q14863538 Q22269699 Q14599729 Q22284230 Q14851921 Q21115753 Q24459846 Q22274350 Q21115817 Q14876924 Q14864904 Q14645719 Q14873676 Q21104842 Q21132115 Q21114820
(c(Q181394),P682,c(Q2996394))
action approx
action find_reverse_tuple_counts
relation P682
type Q2996394
type Q181394
action count
action filter_type
action find
entity Q21102309
relation P682
type Q2996394
[ANSWERS]
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?j WHERE { { SELECT DISTINCT ?j ( COUNT ( ?t ) AS ?w ) WHERE { ?t property:P682 ?j . ?j rdf:type ontology:Q2996394 . ?t rdf:type ontology:Q181394 } GROUP BY ?j } . { SELECT DISTINCT ( COUNT ( ?v ) AS ?n ) WHERE { ?v rdf:type ontology:Q2996394 . resource:Q21102309 property:P682 ?v } } . FILTER ( ?w = ?n ) }
mitotic cell cycle arrest in response to pheromone positive regulation of growth factor dependent skeletal muscle satellite cell proliferation dopamine uptake involved in synaptic transmission development involved in symbiotic interaction leukocyte activation anatomical structure development autophagy T cell mediated cytotoxicity response to external stimulus developmental process involved in reproduction male meiosis detoxification of zinc ion detoxification of arsenic-containing substance acrosome matrix dispersal adaptation of signaling pathway by response to pheromone involved in conjugation with cellular fusion male pronucleus assembly detoxification of nitrogen compound developmental growth dormancy process anatomical structure formation involved in morphogenesis ovulation cycle pronuclear fusion single-organism developmental process filamentous growth manchette assembly protein activation cascade synaptic vesicle docking circadian rhythm complement-dependent cytotoxicity myeloid cell homeostasis synaptic vesicle targeting antigen processing and presentation cartilage condensation meiosis I DNA methylation involved in gamete generation ovulation cycle process protein unfolding positive regulation of flagellated sperm motility involved in capacitation female pronucleus assembly synaptic vesicle priming regulation of transcription involved in meiotic cell cycle response to redox state multicellular organismal reproductive process developmental induction response to pheromone involved in conjugation with cellular fusion gene conversion at mating-type locus, DNA double-strand break processing fertilization, exchange of chromosomal proteins T cell selection natural killer cell mediated cytotoxicity mesenchymal smoothened signaling pathway involved in prostate gland development tolerance induction karyogamy involved in conjugation with cellular fusion nitric oxide storage receptor localization to synapse organic substance metabolic process catabolic process cytolysis cellular localization cell growth multi-organism cellular process gene conversion at mating-type locus, DNA double-strand break formation nitrogen utilization menstrual cycle phase immune system development single organism reproductive process leukocyte mediated cytotoxicity locomotion involved in locomotory behavior acrosome reaction maintenance of cell number activation of immune response budding cell bud growth single-organism behavior spore germination ultradian rhythm FtsZ-dependent cytokinesis primary metabolic process abscission antibody-dependent cellular cytotoxicity response to inactivity response to activity P granule organization synaptic vesicle fusion to presynaptic active zone membrane primary ovarian follicle growth spermatid nucleus differentiation neurotransmitter secretion meiotic cell cycle process rhythmic behavior cellular response to stimulus activation of meiosis involved in egg activation female meiotic division cell cycle process carbon utilization peptide mating pheromone maturation involved in conjugation with cellular fusion preantral ovarian follicle growth carbohydrate utilization anatomical structure morphogenesis response to other organism cell separation after cytokinesis mycothiol-dependent detoxification detection of stimulus spermatogenesis, exchange of chromosomal proteins sperm chromatin condensation leukocyte migration ovarian cumulus expansion adhesion of symbiont to host gene conversion at mating-type locus, DNA repair synthesis leukocyte homeostasis killing of cells of other organism feeding behavior synaptic vesicle exocytosis response to abiotic stimulus cellular component organization pigmentation growth involved in symbiotic interaction response to estrogen cell wall organization or biogenesis hormone metabolic process behavioral response to nutrient intermicrovillar adhesion phenotypic switching directional locomotion cellular metabolic process response to biotic stimulus locomotory behavior cell motility chromosome localization to nuclear envelope involved in homologous chromosome segregation prevention of polyspermy spermatid nucleus elongation
cartilage condensation FtsZ-dependent cytokinesis preantral ovarian follicle growth
action approx
action find_reverse_tuple_counts
relation biological process
type biological process
type nutrient
action count
action filter_type
action find
entity response to abiotic stimulus
relation biological process
type biological process
[{'concept': 'nutrient'}, 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?j WHERE { { SELECT DISTINCT ?j ( COUNT ( ?t ) AS ?w ) WHERE { ?t property:biological_process ?j . ?j rdf:type ontology:biological_process . ?t rdf:type ontology:nutrient } GROUP BY ?j } . { SELECT DISTINCT ( COUNT ( ?v ) AS ?n ) WHERE { ?v rdf:type ontology:biological_process . resource:response_to_abiotic_stimulus property:biological_process ?v } } . FILTER ( ?w = ?n ) }
[]
Clarification
Comparative|Count over More/Less|Single entity type|Indirect
P361
Q5962346 Q2996394
USER
How many biological processes are a component of approximately the same number of classification schemes as that biological process ?
(c(Q2996394),P361,c(Q5962346))
[{'concept': 'Q2996394'}, 'P361', {'concept': 'Q5962346'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?x ) WHERE { ?z property:P361 ?y . ?z rdf:type ontology:Q2996394 . ?y rdf:type ontology:Q5962346 }
[{'concept': 'biological process'}, 'part of', {'concept': 'classification scheme'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?x ) WHERE { ?z property:part_of ?y . ?z rdf:type ontology:biological_process . ?y rdf:type ontology:classification_scheme }
[]
classification scheme biological process
Comparative|Count over More/Less|Single entity type|Clarification
Q21750263
SYSTEM
Did you mean FtsZ-dependent cytokinesis ?
(c(Q2996394),P361,c(Q5962346))
[ANSWER]
[{'concept': 'Q2996394'}, 'P361', {'concept': 'Q5962346'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?x ) WHERE { ?z property:P361 ?y . ?z rdf:type ontology:Q2996394 . ?y rdf:type ontology:Q5962346 }
Did you mean FtsZ-dependent cytokinesis ?
FtsZ-dependent cytokinesis
[{'concept': 'biological process'}, 'part of', {'concept': 'classification scheme'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?x ) WHERE { ?z property:part_of ?y . ?z rdf:type ontology:biological_process . ?y rdf:type ontology:classification_scheme }
[]
Comparative Reasoning (Count) (All)
USER
Yes
(c(Q2996394),P361,c(Q5962346))
[{'concept': 'Q2996394'}, 'P361', {'concept': 'Q5962346'}]
[{'concept': 'biological process'}, 'part of', {'concept': 'classification scheme'}]
[]
SYSTEM
131
Q22294591 Q22294593 Q22290970 Q22294595 Q22272234 Q14862258 Q24457453 Q21107328 Q14904219 Q83944 Q22289032 Q22271492 Q22271494 Q22294752 Q21368803 Q17342249 Q22294585 Q21122953 Q21104659 Q22294615 Q14860198 Q15325345 Q1115221 Q1759895 Q24459941 Q22291478 Q949618 Q14897640 Q21116174 Q14877671 Q21097540 Q14864099 Q21103041 Q21444598 Q21136671 Q22280551 Q21111890 Q22292538 Q14863654 Q22269731 Q22271536 Q22279989 Q27122058 Q14865397 Q22294630 Q14859996 Q14865659 Q14914558 Q22294730 Q21171796 Q22294732 Q22294734 Q22294736 Q22294738 Q22294637 Q22269960 Q21149516 Q22279515 Q22279517 Q22281166 Q11995 Q22284167 Q22289068 Q16007097 Q22279591 Q22289779 Q22294644 Q22294647 Q15320925 Q22291145 Q22294723 Q22311434 Q163261 Q22294726 Q22294880 Q614138 Q22294728 Q22294486 Q21127160 Q22269715 Q21750263 Q333666 Q22289309 Q22293217 Q22284494 Q22270384 Q22291156 Q22294650 Q21106668 Q22255228 Q22280424 Q14904764 Q21104990 Q14863664 Q22294461 Q22250139 Q21111494 Q22272687 Q17304930 Q22283440 Q22284328 Q21108938 Q14864210 Q22302766 Q21106018 Q22294463 Q14864899 Q22271479 Q14904772 Q14904771 Q14912956 Q21108839 Q22311529 Q22279704 Q22282635 Q21104832 Q22253821 Q21124921 Q22294678 Q22269699 Q22273805 Q22284232 Q21115753 Q24459846 Q14873676 Q22269557 Q21104842 Q21132115 Q21114820 Q22253568 Q22272875
(c(Q2996394),P361,c(Q5962346))
[ANSWER]
[{'concept': 'Q2996394'}, 'P361', {'concept': 'Q5962346'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?x ) WHERE { ?z property:P361 ?y . ?z rdf:type ontology:Q2996394 . ?y rdf:type ontology:Q5962346 }
mitotic cell cycle arrest in response to pheromone cell wall organization involved in conjugation with cellular fusion protein localization to meiotic spindle pole body reproductive behavior detection of stimulus involved in meiotic cell cycle checkpoint dopamine uptake involved in synaptic transmission induction of synaptic vesicle exocytosis by positive regulation of presynaptic cytosolic calcium ion concentration development involved in symbiotic interaction developmental process involved in reproduction human evolution actomyosin contractile ring localization detoxification of zinc ion detoxification of arsenic-containing substance modification of morphology or physiology of other organism watercraft rowing Ethical attitude adaptation of signaling pathway by response to pheromone involved in conjugation with cellular fusion male pronucleus assembly detoxification of nitrogen compound luteinizing hormone signaling pathway involved in ovarian follicle development anatomical structure formation involved in morphogenesis pronuclear fusion mores coping manchette assembly pole plasm protein localization Taxis synaptic vesicle docking synaptic vesicle targeting cartilage condensation DNA methylation involved in gamete generation ovulation cycle process protein unfolding positive regulation of flagellated sperm motility involved in capacitation female pronucleus assembly gene conversion at mating-type locus, termination of copy-synthesis synaptic vesicle priming cytoplasmic transport, nurse cell to oocyte multicellular organismal reproductive process movement in environment of other organism involved in symbiotic interaction response to pheromone involved in conjugation with cellular fusion gene conversion at mating-type locus, DNA double-strand break processing synaptic vesicle tethering involved in synaptic vesicle exocytosis T cell selection fusome organization mesenchymal smoothened signaling pathway involved in prostate gland development tolerance induction nitrogen compound metabolic process karyogamy involved in conjugation with cellular fusion nitric oxide storage maintenance of floral organ identity negative regulation of progesterone biosynthesis involved in luteolysis transmembrane receptor protein serine/threonine kinase signaling pathway involved in floral organ abscission cell adhesion involved in prostatic bud elongation karyosome formation pollen tube guidance organic substance metabolic process gene conversion at mating-type locus heteroduplex formation involved in gene conversion at mating-type locus gene conversion at mating-type locus, DNA double-strand break formation pregnancy peptidyl-serine phosphorylation involved in acrosome reaction pole plasm RNA localization habit strand invasion involved in gene conversion at mating-type locus bicoid mRNA localization Wnt signaling pathway involved in animal/vegetal axis specification female germline ring canal formation, actin assembly locomotion involved in locomotory behavior establishment of oocyte nucleus localization involved in oocyte dorsal/ventral axis specification nurse cell nucleus anchoring B cell selection acrosome reaction DNA recombinase assembly involved in gene conversion at mating-type locus acquisition of nutrients from other organism during symbiotic interaction vital function seed oilbody biogenesis signal transduction involved in meiotic cell cycle checkpoint fertilization, exchange of chromosomal proteins budding cell bud growth FtsZ-dependent cytokinesis abscission oocyte nucleus localization involved in oocyte dorsal/ventral axis specification oocyte localization involved in germarium-derived egg chamber formation reproductive process in single-celled organism dissemination or transmission of organism from other organism involved in symbiotic interaction pronuclear migration generative cell mitosis synaptic vesicle fusion to presynaptic active zone membrane regulation of transcription from RNA polymerase II promoter involved in spermatogenesis somatic diversification of immune receptors primary ovarian follicle growth spermatid nucleus differentiation neurotransmitter secretion border follicle cell delamination meiotic cell cycle process activation of meiosis involved in egg activation response to stimulus involved in regulation of muscle adaptation cell cycle process mucilage metabolic process involved in seed coat development peptide mating pheromone maturation involved in conjugation with cellular fusion preantral ovarian follicle growth anatomical structure morphogenesis calcium-dependent activation of synaptic vesicle fusion cell separation after cytokinesis sperm chromatin decondensation acrosome matrix dispersal mycothiol-dependent detoxification spermatogenesis, exchange of chromosomal proteins sperm chromatin condensation ovarian cumulus expansion adhesion of symbiont to host antigen sampling in mucosal-associated lymphoid tissue gene conversion at mating-type locus, DNA repair synthesis cell wall macromolecule catabolic process involved in cytogamy synaptic vesicle exocytosis regulation of transcription involved in meiotic cell cycle P granule organization secondary cell wall biogenesis involved in seed trichome differentiation growth involved in symbiotic interaction photoperiodism, flowering signal transduction involved in conjugation with cellular fusion behavioral response to nutrient intermicrovillar adhesion cell motility uterine wall growth chromosome localization to nuclear envelope involved in homologous chromosome segregation prevention of polyspermy spermatid nucleus elongation positive regulation of transcription involved in egg activation detection of stimulus involved in meiotic spindle checkpoint
131
[{'concept': 'biological process'}, 'part of', {'concept': 'classification scheme'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?x ) WHERE { ?z property:part_of ?y . ?z rdf:type ontology:biological_process . ?y rdf:type ontology:classification_scheme }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23050738
P681
Q15989253
USER
Which are the parts that are a component of protein translocase subunit secA    RSP_1169 ?
(Q23050738,P681,c(Q15989253))
action filter_type
action find
entity Q23050738
relation P681
type Q15989253
['Q23050738', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?t WHERE { resource:Q23050738 property:P681 ?t . ?t rdf:type ontology:Q15989253 }
protein translocase subunit secA    RSP_1169
action filter_type
action find
entity protein translocase subunit secA    RSP_1169
relation cell component
type part
['protein translocase subunit secA    RSP_1169', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?t WHERE { resource:protein_translocase_subunit_secA____RSP_1169 property:cell_component ?t . ?t rdf:type ontology:part }
[]
part
Q79899 Q14349455
SYSTEM
cytoplasm, membrane
Q79899 Q14349455
(Q23050738,P681,c(Q15989253))
action filter_type
action find
entity Q23050738
relation P681
type Q15989253
[ANSWERS]
['Q23050738', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?t WHERE { resource:Q23050738 property:P681 ?t . ?t rdf:type ontology:Q15989253 }
cytoplasm membrane
cytoplasm membrane
action filter_type
action find
entity protein translocase subunit secA    RSP_1169
relation cell component
type part
['protein translocase subunit secA    RSP_1169', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?t WHERE { resource:protein_translocase_subunit_secA____RSP_1169 property:cell_component ?t . ?t rdf:type ontology:part }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23050738
P702
Q863908
USER
What is the gene that encodes protein translocase subunit secA    RSP_1169 ?
(Q23050738,P702,c(Q863908))
action filter_type
action find
entity Q23050738
relation P702
type Q863908
['Q23050738', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?d WHERE { resource:Q23050738 property:P702 ?d . ?d rdf:type ontology:Q863908 }
protein translocase subunit secA    RSP_1169
action filter_type
action find
entity protein translocase subunit secA    RSP_1169
relation encoded by
type nucleic acid sequence
['protein translocase subunit secA    RSP_1169', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?d WHERE { resource:protein_translocase_subunit_secA____RSP_1169 property:encoded_by ?d . ?d rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23028456
SYSTEM
protein translocase subunit secA    RSP_1169
Q23028456
(Q23050738,P702,c(Q863908))
action filter_type
action find
entity Q23050738
relation P702
type Q863908
[ANSWER]
['Q23050738', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?d WHERE { resource:Q23050738 property:P702 ?d . ?d rdf:type ontology:Q863908 }
protein translocase subunit secA    RSP_1169
protein translocase subunit secA    RSP_1169
action filter_type
action find
entity protein translocase subunit secA    RSP_1169
relation encoded by
type nucleic acid sequence
['protein translocase subunit secA    RSP_1169', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?d WHERE { resource:protein_translocase_subunit_secA____RSP_1169 property:encoded_by ?d . ?d rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23050738
P703
Q631147
USER
Which infraspecific name is protein translocase subunit secA    RSP_1169 found in ?
(Q23050738,P703,c(Q631147))
action filter_type
action find
entity Q23050738
relation P703
type Q631147
['Q23050738', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?b WHERE { resource:Q23050738 property:P703 ?b . ?b rdf:type ontology:Q631147 }
protein translocase subunit secA    RSP_1169
action filter_type
action find
entity protein translocase subunit secA    RSP_1169
relation found in taxon
type infraspecific name
['protein translocase subunit secA    RSP_1169', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?b WHERE { resource:protein_translocase_subunit_secA____RSP_1169 property:found_in_taxon ?b . ?b rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102953
SYSTEM
Rhodobacter sphaeroides 2.4.1
Q21102953
(Q23050738,P703,c(Q631147))
action filter_type
action find
entity Q23050738
relation P703
type Q631147
[ANSWER]
['Q23050738', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?b WHERE { resource:Q23050738 property:P703 ?b . ?b rdf:type ontology:Q631147 }
Rhodobacter sphaeroides 2.4.1
Rhodobacter sphaeroides 2.4.1
action filter_type
action find
entity protein translocase subunit secA    RSP_1169
relation found in taxon
type infraspecific name
['protein translocase subunit secA    RSP_1169', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?b WHERE { resource:protein_translocase_subunit_secA____RSP_1169 property:found_in_taxon ?b . ?b rdf:type ontology:infraspecific_name }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q23262767
Q631147
USER
And also tell me about 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase    ML0226?
(Q23262767,P703,c(Q631147))
action filter_type
action find
entity Q23262767
relation P703
type Q631147
['Q23262767', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?i WHERE { resource:Q23262767 property:P703 ?i . ?i rdf:type ontology:Q631147 }
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase    ML0226
action filter_type
action find
entity 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase    ML0226
relation found in taxon
type infraspecific name
['2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase    ML0226', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?i WHERE { resource:2-amino-4-hydroxy-6-hydroxymethyldihydropteridine_pyrophosphokinase____ML0226 property:found_in_taxon ?i . ?i rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102985
SYSTEM
Mycobacterium leprae TN
Q21102985
(Q23262767,P703,c(Q631147))
action filter_type
action find
entity Q23262767
relation P703
type Q631147
[ANSWER]
['Q23262767', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?i WHERE { resource:Q23262767 property:P703 ?i . ?i rdf:type ontology:Q631147 }
Mycobacterium leprae TN
Mycobacterium leprae TN
action filter_type
action find
entity 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase    ML0226
relation found in taxon
type infraspecific name
['2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase    ML0226', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?i WHERE { resource:2-amino-4-hydroxy-6-hydroxymethyldihydropteridine_pyrophosphokinase____ML0226 property:found_in_taxon ?i . ?i rdf:type ontology:infraspecific_name }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q21126478 Q23050738
P681
Q5058355
USER
Which cellular components are the cell components of protein translocase subunit secA    RSP_1169 or Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B ?
OR((Q23050738,P681,c(Q5058355)), (Q21126478,P681,c(Q5058355)))
action filter_type
action union
action find
entity Q23050738
relation P681
action find
entity Q21126478
relation P681
type Q5058355
{'OR': [['Q23050738', 'P681', {'concept': 'Q5058355'}], ['Q21126478', 'P681', {'concept': 'Q5058355'}]]}
SELECT DISTINCT ?f WHERE { ?f rdf:type ontology:Q5058355 . { { resource:Q23050738 property:P681 ?f } UNION { resource:Q21126478 property:P681 ?f } } }
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B protein translocase subunit secA    RSP_1169
action filter_type
action union
action find
entity protein translocase subunit secA    RSP_1169
relation cell component
action find
entity Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B
relation cell component
type cellular component
{'OR': [['protein translocase subunit secA    RSP_1169', 'cell component', {'concept': 'cellular component'}], ['Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B', 'cell component', {'concept': 'cellular component'}]]}
SELECT DISTINCT ?f WHERE { ?f rdf:type ontology:cellular_component . { { resource:protein_translocase_subunit_secA____RSP_1169 property:cell_component ?f } UNION { resource:Dolichyl-diphosphooligosaccharide--protein_glycosyltransferase_subunit_STT3B property:cell_component ?f } } }
[]
cellular component
Q21971286 Q29548 Q14329032 Q79927
SYSTEM
oligosaccharyltransferase complex, plasma membrane, endoplasmic reticulum membrane, endoplasmic reticulum
Q21971286 Q29548 Q14329032 Q79927
OR((Q23050738,P681,c(Q5058355)), (Q21126478,P681,c(Q5058355)))
action filter_type
action union
action find
entity Q23050738
relation P681
action find
entity Q21126478
relation P681
type Q5058355
[ANSWERS]
{'OR': [['Q23050738', 'P681', {'concept': 'Q5058355'}], ['Q21126478', 'P681', {'concept': 'Q5058355'}]]}
SELECT DISTINCT ?f WHERE { ?f rdf:type ontology:Q5058355 . { { resource:Q23050738 property:P681 ?f } UNION { resource:Q21126478 property:P681 ?f } } }
oligosaccharyltransferase complex plasma membrane endoplasmic reticulum membrane endoplasmic reticulum
oligosaccharyltransferase complex plasma membrane endoplasmic reticulum membrane endoplasmic reticulum
action filter_type
action union
action find
entity protein translocase subunit secA    RSP_1169
relation cell component
action find
entity Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B
relation cell component
type cellular component
{'OR': [['protein translocase subunit secA    RSP_1169', 'cell component', {'concept': 'cellular component'}], ['Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B', 'cell component', {'concept': 'cellular component'}]]}
SELECT DISTINCT ?f WHERE { ?f rdf:type ontology:cellular_component . { { resource:protein_translocase_subunit_secA____RSP_1169 property:cell_component ?f } UNION { resource:Dolichyl-diphosphooligosaccharide--protein_glycosyltransferase_subunit_STT3B property:cell_component ?f } } }
[]
Clarification
Simple Question|Single Entity|Indirect
Q79927
P361
Q5058355
USER
What is that one a component of ?
(Q79927,P361,c(Q5058355))
action filter_type
action find
entity Q79927
relation P361
type Q5058355
['Q79927', 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ?u WHERE { resource:Q79927 property:P361 ?u . ?u rdf:type ontology:Q5058355 }
endoplasmic reticulum
action filter_type
action find
entity endoplasmic reticulum
relation part of
type cellular component
['endoplasmic reticulum', 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ?u WHERE { resource:endoplasmic_reticulum property:part_of ?u . ?u rdf:type ontology:cellular_component }
[]
cellular component
Clarification for simple ques.
Q21971286
SYSTEM
Did you mean oligosaccharyltransferase complex ?
Q21971286 Q29548 Q14329032 Q79927
(Q21971286,P361,c(Q5058355)) (Q29548,P361,c(Q5058355)) (Q14329032,P361,c(Q5058355)) (Q79927,P361,c(Q5058355))
[ANSWER]
['Q21971286', 'P361', {'concept': 'Q5058355'}] ['Q29548', 'P361', {'concept': 'Q5058355'}] ['Q14329032', 'P361', {'concept': 'Q5058355'}] ['Q79927', 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ?u WHERE { resource:Q79927 property:P361 ?u . ?u rdf:type ontology:Q5058355 }
oligosaccharyltransferase complex plasma membrane endoplasmic reticulum membrane endoplasmic reticulum
Did you mean oligosaccharyltransferase complex ?
oligosaccharyltransferase complex
['oligosaccharyltransferase complex', 'part of', {'concept': 'cellular component'}] ['plasma membrane', 'part of', {'concept': 'cellular component'}] ['endoplasmic reticulum membrane', 'part of', {'concept': 'cellular component'}] ['endoplasmic reticulum', 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ?u WHERE { resource:endoplasmic_reticulum property:part_of ?u . ?u rdf:type ontology:cellular_component }
[]
Simple Question (Coreferenced)
USER
No, I meant endoplasmic reticulum. Could you tell me the answer for that?
(Q79927,P361,c(Q5058355))
Q79927
['Q79927', 'P361', {'concept': 'Q5058355'}]
['endoplasmic reticulum', 'part of', {'concept': 'cellular component'}]
[]
Q899827
SYSTEM
endomembrane system
Q899827
(Q79927,P361,c(Q5058355))
action filter_type
action find
entity Q79927
relation P361
type Q5058355
[ANSWER]
['Q79927', 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ?u WHERE { resource:Q79927 property:P361 ?u . ?u rdf:type ontology:Q5058355 }
endomembrane system
endomembrane system
action filter_type
action find
entity endoplasmic reticulum
relation part of
type cellular component
['endoplasmic reticulum', 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ?u WHERE { resource:endoplasmic_reticulum property:part_of ?u . ?u rdf:type ontology:cellular_component }
[]