Simple Question (Direct)
Simple Question
Q27475635
P682
Q1057
USER
Which metabolic process is D-arabinose 5-phosphate isomerase    SDY_3378 involved in ?
(Q27475635,P682,c(Q1057))
action filter_type
action find
entity Q27475635
relation P682
type Q1057
['Q27475635', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?h WHERE { resource:Q27475635 property:P682 ?h . ?h rdf:type ontology:Q1057 }
D-arabinose 5-phosphate isomerase    SDY_3378
action filter_type
action find
entity D-arabinose 5-phosphate isomerase    SDY_3378
relation biological process
type metabolic process
['D-arabinose 5-phosphate isomerase    SDY_3378', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?h WHERE { resource:D-arabinose_5-phosphate_isomerase____SDY_3378 property:biological_process ?h . ?h rdf:type ontology:metabolic_process }
[]
metabolic process
Q14762260
SYSTEM
carbohydrate metabolic process
Q14762260
(Q27475635,P682,c(Q1057))
action filter_type
action find
entity Q27475635
relation P682
type Q1057
[ANSWER] is D-arabinose 5-phosphate isomerase SDY_3378 involved in
['Q27475635', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?h WHERE { resource:Q27475635 property:P682 ?h . ?h rdf:type ontology:Q1057 }
carbohydrate metabolic process
Carbohydrate metabolic process is D-arabinose 5-phosphate isomerase SDY_3378 involved in
carbohydrate metabolic process
action filter_type
action find
entity D-arabinose 5-phosphate isomerase    SDY_3378
relation biological process
type metabolic process
['D-arabinose 5-phosphate isomerase    SDY_3378', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?h WHERE { resource:D-arabinose_5-phosphate_isomerase____SDY_3378 property:biological_process ?h . ?h rdf:type ontology:metabolic_process }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q27475635
P703
Q631147
USER
Where is D-arabinose 5-phosphate isomerase    SDY_3378 found ?
(Q27475635,P703,c(Q631147))
action filter_type
action find
entity Q27475635
relation P703
type Q631147
['Q27475635', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?z WHERE { resource:Q27475635 property:P703 ?z . ?z rdf:type ontology:Q631147 }
D-arabinose 5-phosphate isomerase    SDY_3378
action filter_type
action find
entity D-arabinose 5-phosphate isomerase    SDY_3378
relation found in taxon
type infraspecific name
['D-arabinose 5-phosphate isomerase    SDY_3378', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?z WHERE { resource:D-arabinose_5-phosphate_isomerase____SDY_3378 property:found_in_taxon ?z . ?z rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102940
SYSTEM
Shigella dysenteriae Sd197
Q21102940
(Q27475635,P703,c(Q631147))
action filter_type
action find
entity Q27475635
relation P703
type Q631147
D-arabinose 5-phosphate isomerase SDY_3378 is found in [ANSWER]
['Q27475635', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?z WHERE { resource:Q27475635 property:P703 ?z . ?z rdf:type ontology:Q631147 }
Shigella dysenteriae Sd197
D-arabinose 5-phosphate isomerase SDY_3378 is found in Shigella dysenteriae Sd197
Shigella dysenteriae Sd197
action filter_type
action find
entity D-arabinose 5-phosphate isomerase    SDY_3378
relation found in taxon
type infraspecific name
['D-arabinose 5-phosphate isomerase    SDY_3378', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?z WHERE { resource:D-arabinose_5-phosphate_isomerase____SDY_3378 property:found_in_taxon ?z . ?z rdf:type ontology:infraspecific_name }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q23185444
Q631147
USER
And also tell me about hypothetical protein    DR_0553?
(Q23185444,P703,c(Q631147))
action filter_type
action find
entity Q23185444
relation P703
type Q631147
['Q23185444', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?o WHERE { resource:Q23185444 property:P703 ?o . ?o rdf:type ontology:Q631147 }
hypothetical protein    DR_0553
action filter_type
action find
entity hypothetical protein    DR_0553
relation found in taxon
type infraspecific name
['hypothetical protein    DR_0553', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?o WHERE { resource:hypothetical_protein____DR_0553 property:found_in_taxon ?o . ?o rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102959
SYSTEM
Deinococcus radiodurans R1
Q21102959
(Q23185444,P703,c(Q631147))
action filter_type
action find
entity Q23185444
relation P703
type Q631147
[ANSWER]
['Q23185444', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?o WHERE { resource:Q23185444 property:P703 ?o . ?o rdf:type ontology:Q631147 }
Deinococcus radiodurans R1
Deinococcus radiodurans R1
action filter_type
action find
entity hypothetical protein    DR_0553
relation found in taxon
type infraspecific name
['hypothetical protein    DR_0553', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?o WHERE { resource:hypothetical_protein____DR_0553 property:found_in_taxon ?o . ?o rdf:type ontology:infraspecific_name }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q27552534
Q631147
USER
And also tell me about Yro2p YBR054W?
(Q27552534,P703,c(Q631147))
action filter_type
action find
entity Q27552534
relation P703
type Q631147
['Q27552534', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?l WHERE { resource:Q27552534 property:P703 ?l . ?l rdf:type ontology:Q631147 }
Yro2p YBR054W
action filter_type
action find
entity Yro2p YBR054W
relation found in taxon
type infraspecific name
['Yro2p YBR054W', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?l WHERE { resource:Yro2p_YBR054W property:found_in_taxon ?l . ?l rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q27510868
SYSTEM
Saccharomyces cerevisiae S288c
Q27510868
(Q27552534,P703,c(Q631147))
action filter_type
action find
entity Q27552534
relation P703
type Q631147
[ANSWER]
['Q27552534', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?l WHERE { resource:Q27552534 property:P703 ?l . ?l rdf:type ontology:Q631147 }
Saccharomyces cerevisiae S288c
Saccharomyces cerevisiae S288c
action filter_type
action find
entity Yro2p YBR054W
relation found in taxon
type infraspecific name
['Yro2p YBR054W', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?l WHERE { resource:Yro2p_YBR054W property:found_in_taxon ?l . ?l rdf:type ontology:infraspecific_name }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q27552534
P688
Q863908
USER
Which nucleic acid sequence encodes Yro2p YBR054W ?
(c(Q863908),P688,Q27552534)
action filter_type
action find_reverse
entity Q27552534
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q27552534']
SELECT DISTINCT ?b WHERE { ?b property:P688 resource:Q27552534 . ?b rdf:type ontology:Q863908 }
Yro2p YBR054W
action filter_type
action find_reverse
entity Yro2p YBR054W
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Yro2p YBR054W']
SELECT DISTINCT ?b WHERE { ?b property:encodes resource:Yro2p_YBR054W . ?b rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q27545468
SYSTEM
Yro2p YBR054W
Q27545468
(c(Q863908),P688,Q27552534)
action filter_type
action find_reverse
entity Q27552534
relation P688
type Q863908
[ANSWER] encodes [ANSWER]
[{'concept': 'Q863908'}, 'P688', 'Q27552534']
SELECT DISTINCT ?b WHERE { ?b property:P688 resource:Q27552534 . ?b rdf:type ontology:Q863908 }
Yro2p YBR054W
Yro2p YBR054W encodes Yro2p YBR054W
Yro2p YBR054W
action filter_type
action find_reverse
entity Yro2p YBR054W
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Yro2p YBR054W']
SELECT DISTINCT ?b WHERE { ?b property:encodes resource:Yro2p_YBR054W . ?b rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q27552534
P702
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(Q27545468,P702,c(Q863908))
action filter_type
action find
entity Q27552534
relation P702
type Q863908
['Q27545468', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?q WHERE { ?q rdf:type ontology:Q863908 . resource:Q27552534 property:P702 ?q }
Yro2p YBR054W
action filter_type
action find
entity Yro2p YBR054W
relation encoded by
type nucleic acid sequence
['Yro2p YBR054W', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?q WHERE { ?q rdf:type ontology:nucleic_acid_sequence . resource:Yro2p_YBR054W property:encoded_by ?q }
[]
nucleic acid sequence
Q27545468
SYSTEM
Yro2p YBR054W
Q27545468
(Q27545468,P702,c(Q863908))
action filter_type
action find
entity Q27552534
relation P702
type Q863908
[ANSWER] encodes that nutrient
['Q27545468', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?q WHERE { ?q rdf:type ontology:Q863908 . resource:Q27552534 property:P702 ?q }
Yro2p YBR054W
Yro2p YBR054W encodes that nutrient
Yro2p YBR054W
action filter_type
action find
entity Yro2p YBR054W
relation encoded by
type nucleic acid sequence
['Yro2p YBR054W', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?q WHERE { ?q rdf:type ontology:nucleic_acid_sequence . resource:Yro2p_YBR054W property:encoded_by ?q }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type
Q27552534
P681
Q5058355
USER
How many cellular components are the components of Yro2p YBR054W ?
(Q27552534,P681,c(Q5058355))
action count
action filter_type
action find
entity Q27552534
relation P681
type Q5058355
['Q27552534', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ( COUNT ( ?w ) AS ?z ) WHERE { ?w rdf:type ontology:Q5058355 . resource:Q27552534 property:P681 ?w }
Yro2p YBR054W
action count
action filter_type
action find
entity Yro2p YBR054W
relation cell component
type cellular component
['Yro2p YBR054W', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ( COUNT ( ?w ) AS ?z ) WHERE { ?w rdf:type ontology:cellular_component . resource:Yro2p_YBR054W property:cell_component ?w }
[]
cellular component
SYSTEM
3
Q22327884 Q79927 Q29548
(Q27552534,P681,c(Q5058355))
action count
action filter_type
action find
entity Q27552534
relation P681
type Q5058355
[ANSWER]
['Q27552534', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ( COUNT ( ?w ) AS ?z ) WHERE { ?w rdf:type ontology:Q5058355 . resource:Q27552534 property:P681 ?w }
cellular bud endoplasmic reticulum plasma membrane
3
action count
action filter_type
action find
entity Yro2p YBR054W
relation cell component
type cellular component
['Yro2p YBR054W', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ( COUNT ( ?w ) AS ?z ) WHERE { ?w rdf:type ontology:cellular_component . resource:Yro2p_YBR054W property:cell_component ?w }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type|Incomplete
Q27752153
P681
Q5058355
USER
And what about 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase    SCO2050?
(Q27752153,P681,c(Q5058355))
action count
action filter_type
action find
entity Q27752153
relation P681
type Q5058355
['Q27752153', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ( COUNT ( ?b ) AS ?h ) WHERE { resource:Q27752153 property:P681 ?b . ?b rdf:type ontology:Q5058355 }
1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase    SCO2050
action count
action filter_type
action find
entity 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase    SCO2050
relation cell component
type cellular component
['1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase    SCO2050', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ( COUNT ( ?b ) AS ?h ) WHERE { resource:1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide_isomerase____SCO2050 property:cell_component ?b . ?b rdf:type ontology:cellular_component }
[]
cellular component
SYSTEM
1
Q3824358
(Q27752153,P681,c(Q5058355))
action count
action filter_type
action find
entity Q27752153
relation P681
type Q5058355
[ANSWER]
['Q27752153', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ( COUNT ( ?b ) AS ?h ) WHERE { resource:Q27752153 property:P681 ?b . ?b rdf:type ontology:Q5058355 }
intracellular
1
action count
action filter_type
action find
entity 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase    SCO2050
relation cell component
type cellular component
['1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase    SCO2050', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ( COUNT ( ?b ) AS ?h ) WHERE { resource:1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide_isomerase____SCO2050 property:cell_component ?b . ?b rdf:type ontology:cellular_component }
[]