Simple Question (Direct)
Simple Question
Q21605366
P703
Q16521
USER
Which taxon is diphosphomevalonate decarboxylase    BB_0686 found in ?
(Q21605366,P703,c(Q16521))
action filter_type
action find
entity Q21605366
relation P703
type Q16521
['Q21605366', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:Q16521 . resource:Q21605366 property:P703 ?s }
diphosphomevalonate decarboxylase    BB_0686
action filter_type
action find
entity diphosphomevalonate decarboxylase    BB_0686
relation found in taxon
type taxon
['diphosphomevalonate decarboxylase    BB_0686', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:taxon . resource:diphosphomevalonate_decarboxylase____BB_0686 property:found_in_taxon ?s }
[]
taxon
Q21065227
SYSTEM
Borrelia burgdorferi B31
Q21065227
(Q21605366,P703,c(Q16521))
action filter_type
action find
entity Q21605366
relation P703
type Q16521
Which taxon is diphosphomevalonate decarboxylase BB_0686 found in
['Q21605366', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:Q16521 . resource:Q21605366 property:P703 ?s }
Borrelia burgdorferi B31
Which taxon is diphosphomevalonate decarboxylase BB_0686 found in
Borrelia burgdorferi B31
action filter_type
action find
entity diphosphomevalonate decarboxylase    BB_0686
relation found in taxon
type taxon
['diphosphomevalonate decarboxylase    BB_0686', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:taxon . resource:diphosphomevalonate_decarboxylase____BB_0686 property:found_in_taxon ?s }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21605366
P702
Q863908
USER
What encodes that nutrient ?
(Q21065227,P702,c(Q863908))
action filter_type
action find
entity Q21605366
relation P702
type Q863908
['Q21065227', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?q WHERE { resource:Q21605366 property:P702 ?q . ?q rdf:type ontology:Q863908 }
diphosphomevalonate decarboxylase    BB_0686
action filter_type
action find
entity diphosphomevalonate decarboxylase    BB_0686
relation encoded by
type nucleic acid sequence
['Borrelia burgdorferi B31', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?q WHERE { resource:diphosphomevalonate_decarboxylase____BB_0686 property:encoded_by ?q . ?q rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q21603389
SYSTEM
diphosphomevalonate decarboxylase    BB_0686
Q21603389
(Q21065227,P702,c(Q863908))
action filter_type
action find
entity Q21605366
relation P702
type Q863908
The diphosphomevalonate decarboxylase BB 0686 encodes that nutrient
['Q21065227', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?q WHERE { resource:Q21605366 property:P702 ?q . ?q rdf:type ontology:Q863908 }
diphosphomevalonate decarboxylase    BB_0686
The diphosphomevalonate decarboxylase BB 0686 encodes that nutrient
diphosphomevalonate decarboxylase    BB_0686
action filter_type
action find
entity diphosphomevalonate decarboxylase    BB_0686
relation encoded by
type nucleic acid sequence
['Borrelia burgdorferi B31', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?q WHERE { resource:diphosphomevalonate_decarboxylase____BB_0686 property:encoded_by ?q . ?q rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|3 entities, 2 direct, 2(direct) are query entities, subject is indirect
Q21603389 Q21984178 Q21605366
P688
Q181394
USER
Does that nucleic acid sequence encodes D(1A) dopamine receptor and diphosphomevalonate decarboxylase    BB_0686 ?
(Q21603389,P688,Q21984178) (Q21603389,P688,Q21605366)
action is_in
entity Q21603389
action intersection
action find_reverse
entity Q21984178
relation P688
action find_reverse
entity Q21605366
relation P688
['Q21603389', 'P688', 'Q21984178'] ['Q21603389', 'P688', 'Q21605366']
ASK WHERE { resource:Q21603389 property:P688 resource:Q21984178 . resource:Q21603389 property:P688 resource:Q21605366 }
diphosphomevalonate decarboxylase    BB_0686 D(1A) dopamine receptor diphosphomevalonate decarboxylase    BB_0686
action is_in
entity diphosphomevalonate decarboxylase    BB_0686
action intersection
action find_reverse
entity D(1A) dopamine receptor
relation encodes
action find_reverse
entity diphosphomevalonate decarboxylase    BB_0686
relation encodes
['diphosphomevalonate decarboxylase    BB_0686', 'encodes', 'D(1A) dopamine receptor'] ['diphosphomevalonate decarboxylase    BB_0686', 'encodes', 'diphosphomevalonate decarboxylase    BB_0686']
ASK WHERE { resource:diphosphomevalonate_decarboxylase____BB_0686 property:encodes resource:D(1A)_dopamine_receptor . resource:diphosphomevalonate_decarboxylase____BB_0686 property:encodes resource:diphosphomevalonate_decarboxylase____BB_0686 }
[]
nutrient
SYSTEM
NO and YES respectively
(Q21603389,P688,Q21984178) (Q21603389,P688,Q21605366)
action is_in
entity Q21603389
action intersection
action find_reverse
entity Q21984178
relation P688
action find_reverse
entity Q21605366
relation P688
[ANSWER]
['Q21603389', 'P688', 'Q21984178'] ['Q21603389', 'P688', 'Q21605366']
ASK WHERE { resource:Q21603389 property:P688 resource:Q21984178 . resource:Q21603389 property:P688 resource:Q21605366 }
NO and YES respectively
action is_in
entity diphosphomevalonate decarboxylase    BB_0686
action intersection
action find_reverse
entity D(1A) dopamine receptor
relation encodes
action find_reverse
entity diphosphomevalonate decarboxylase    BB_0686
relation encodes
['diphosphomevalonate decarboxylase    BB_0686', 'encodes', 'D(1A) dopamine receptor'] ['diphosphomevalonate decarboxylase    BB_0686', 'encodes', 'diphosphomevalonate decarboxylase    BB_0686']
ASK WHERE { resource:diphosphomevalonate_decarboxylase____BB_0686 property:encodes resource:D(1A)_dopamine_receptor . resource:diphosphomevalonate_decarboxylase____BB_0686 property:encodes resource:diphosphomevalonate_decarboxylase____BB_0686 }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q21109000 Q21984178
P681
Q5058355
USER
Which cellular components are components of D(1A) dopamine receptor or Semaphorin-7A ?
OR((Q21984178,P681,c(Q5058355)), (Q21109000,P681,c(Q5058355)))
action filter_type
action union
action find
entity Q21984178
relation P681
action find
entity Q21109000
relation P681
type Q5058355
{'OR': [['Q21984178', 'P681', {'concept': 'Q5058355'}], ['Q21109000', 'P681', {'concept': 'Q5058355'}]]}
SELECT DISTINCT ?w WHERE { { ?g property:P681 ?w . VALUES ( ?g ) { ( resource:Q21984178 ) ( resource:Q21109000 ) } } . ?w rdf:type ontology:Q5058355 }
Semaphorin-7A D(1A) dopamine receptor
action filter_type
action union
action find
entity D(1A) dopamine receptor
relation cell component
action find
entity Semaphorin-7A
relation cell component
type cellular component
{'OR': [['D(1A) dopamine receptor', 'cell component', {'concept': 'cellular component'}], ['Semaphorin-7A', 'cell component', {'concept': 'cellular component'}]]}
SELECT DISTINCT ?w WHERE { { ?g property:cell_component ?w . VALUES ( ?g ) { ( resource:D(1A)_dopamine_receptor ) ( resource:Semaphorin-7A ) } } . ?w rdf:type ontology:cellular_component }
[]
cellular component
Q2914458 Q79927 Q899827 Q14329032 Q29548
SYSTEM
extracellular space, endoplasmic reticulum, endomembrane system, endoplasmic reticulum membrane, plasma membrane
Q2914458 Q79927 Q899827 Q14329032 Q29548
OR((Q21984178,P681,c(Q5058355)), (Q21109000,P681,c(Q5058355)))
action filter_type
action union
action find
entity Q21984178
relation P681
action find
entity Q21109000
relation P681
type Q5058355
[ANSWERS] are components of D(1A) dopamine receptor or Semaphorin-7A
{'OR': [['Q21984178', 'P681', {'concept': 'Q5058355'}], ['Q21109000', 'P681', {'concept': 'Q5058355'}]]}
SELECT DISTINCT ?w WHERE { { ?g property:P681 ?w . VALUES ( ?g ) { ( resource:Q21984178 ) ( resource:Q21109000 ) } } . ?w rdf:type ontology:Q5058355 }
extracellular space endoplasmic reticulum endomembrane system endoplasmic reticulum membrane plasma membrane
Extracellular space, endoplasmic reticulum, endomembrane system, endoplasmic reticulum membrane and plasma membrane are components of D(1A) dopamine receptor or Semaphorin-7A
extracellular space endoplasmic reticulum endomembrane system endoplasmic reticulum membrane plasma membrane
action filter_type
action union
action find
entity D(1A) dopamine receptor
relation cell component
action find
entity Semaphorin-7A
relation cell component
type cellular component
{'OR': [['D(1A) dopamine receptor', 'cell component', {'concept': 'cellular component'}], ['Semaphorin-7A', 'cell component', {'concept': 'cellular component'}]]}
SELECT DISTINCT ?w WHERE { { ?g property:cell_component ?w . VALUES ( ?g ) { ( resource:D(1A)_dopamine_receptor ) ( resource:Semaphorin-7A ) } } . ?w rdf:type ontology:cellular_component }
[]
Verification (Boolean) (All)
Verification|one entity, multiple entities (as object) referred indirectly
Q27484851
P681
Q181394
USER
Are those ones a cell component of hypothetical protein    YPO3559 ?
(Q27484851,P681,Q2914458) (Q27484851,P681,Q79927) (Q27484851,P681,Q899827) (Q27484851,P681,Q14329032) (Q27484851,P681,Q29548)
action is_in
entity prev_answer
action find
entity Q27484851
relation P681
['Q27484851', 'P681', 'Q2914458'] ['Q27484851', 'P681', 'Q79927'] ['Q27484851', 'P681', 'Q899827'] ['Q27484851', 'P681', 'Q14329032'] ['Q27484851', 'P681', 'Q29548']
ASK WHERE { VALUES ( ?g ) { ( resource:Q2914458 ) ( resource:Q79927 ) ( resource:Q899827 ) } . resource:Q27484851 property:P681 ?g }
hypothetical protein    YPO3559
action is_in
entity prev_answer
action find
entity hypothetical protein    YPO3559
relation cell component
['hypothetical protein    YPO3559', 'cell component', 'extracellular space'] ['hypothetical protein    YPO3559', 'cell component', 'endoplasmic reticulum'] ['hypothetical protein    YPO3559', 'cell component', 'endomembrane system'] ['hypothetical protein    YPO3559', 'cell component', 'endoplasmic reticulum membrane'] ['hypothetical protein    YPO3559', 'cell component', 'plasma membrane']
ASK WHERE { VALUES ( ?g ) { ( resource:extracellular_space ) ( resource:endoplasmic_reticulum ) ( resource:endomembrane_system ) } . resource:hypothetical_protein____YPO3559 property:cell_component ?g }
[]
nutrient
SYSTEM
NO
(Q27484851,P681,Q2914458) (Q27484851,P681,Q79927) (Q27484851,P681,Q899827) (Q27484851,P681,Q14329032) (Q27484851,P681,Q29548)
action is_in
entity prev_answer
action find
entity Q27484851
relation P681
[ANSWER]
['Q27484851', 'P681', 'Q2914458'] ['Q27484851', 'P681', 'Q79927'] ['Q27484851', 'P681', 'Q899827'] ['Q27484851', 'P681', 'Q14329032'] ['Q27484851', 'P681', 'Q29548']
ASK WHERE { VALUES ( ?g ) { ( resource:Q2914458 ) ( resource:Q79927 ) ( resource:Q899827 ) } . resource:Q27484851 property:P681 ?g }
No
action is_in
entity prev_answer
action find
entity hypothetical protein    YPO3559
relation cell component
['hypothetical protein    YPO3559', 'cell component', 'extracellular space'] ['hypothetical protein    YPO3559', 'cell component', 'endoplasmic reticulum'] ['hypothetical protein    YPO3559', 'cell component', 'endomembrane system'] ['hypothetical protein    YPO3559', 'cell component', 'endoplasmic reticulum membrane'] ['hypothetical protein    YPO3559', 'cell component', 'plasma membrane']
ASK WHERE { VALUES ( ?g ) { ( resource:extracellular_space ) ( resource:endoplasmic_reticulum ) ( resource:endomembrane_system ) } . resource:hypothetical_protein____YPO3559 property:cell_component ?g }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q2914458
P361
Q5058355
USER
Which cellular components are a component of extracellular space ?
(c(Q5058355),P361,Q2914458)
action filter_type
action find_reverse
entity Q2914458
relation P361
type Q5058355
[{'concept': 'Q5058355'}, 'P361', 'Q2914458']
SELECT DISTINCT ?n WHERE { ?n property:P361 resource:Q2914458 . ?n rdf:type ontology:Q5058355 }
extracellular space
action filter_type
action find_reverse
entity extracellular space
relation part of
type cellular component
[{'concept': 'cellular component'}, 'part of', 'extracellular space']
SELECT DISTINCT ?n WHERE { ?n property:part_of resource:extracellular_space . ?n rdf:type ontology:cellular_component }
[]
cellular component
Q22325981 Q22327407 Q22327448
SYSTEM
classical-complement-pathway C3/C5 convertase complex, activin complex, interleukin-35 complex
Q22325981 Q22327407 Q22327448 Q21971414 Q21095089 Q22327447 Q21116899 Q14819441 Q14863683 Q22327419 Q21136996 Q22325973 Q14906187 Q21120634 Q21120639 Q22327421 Q21108411
(c(Q5058355),P361,Q2914458)
action filter_type
action find_reverse
entity Q2914458
relation P361
type Q5058355
[ANSWERS] are a component of extracellular space
[{'concept': 'Q5058355'}, 'P361', 'Q2914458']
SELECT DISTINCT ?n WHERE { ?n property:P361 resource:Q2914458 . ?n rdf:type ontology:Q5058355 }
classical-complement-pathway C3/C5 convertase complex activin complex interleukin-35 complex plasma lipoprotein particle blood microparticle interleukin-27 complex complement component C1 complex fibrinogen complex insulin-like growth factor binding protein complex inhibin complex immunoglobulin complex, circulating larval serum protein complex CRLF-CLCF1 complex interleukin-12 complex interleukin-23 complex bursicon neuropeptide hormone complex CNTFR-CLCF1 complex
Classical-complement-pathway C3/C5 convertase complex, activin complex and interleukin-35 complex are a component of extracellular space
classical-complement-pathway C3/C5 convertase complex activin complex interleukin-35 complex
action filter_type
action find_reverse
entity extracellular space
relation part of
type cellular component
[{'concept': 'cellular component'}, 'part of', 'extracellular space']
SELECT DISTINCT ?n WHERE { ?n property:part_of resource:extracellular_space . ?n rdf:type ontology:cellular_component }
[]
Simple Question (Coreferenced)
Simple Question|Mult. Entity
Q22325981 Q22327407 Q22327448
P361
Q5058355
USER
Which cellular components are those ones a component of ?
(Q22325981,P361,c(Q5058355)) (Q22327407,P361,c(Q5058355)) (Q22327448,P361,c(Q5058355))
action filter_type
action find
entity prev_answer
relation P361
type Q5058355
['Q22325981', 'P361', {'concept': 'Q5058355'}] ['Q22327407', 'P361', {'concept': 'Q5058355'}] ['Q22327448', 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:Q5058355 . ?u property:P361 ?m . VALUES ( ?u ) { ( resource:Q22325981 ) ( resource:Q22327407 ) ( resource:Q22327448 ) } }
classical-complement-pathway C3/C5 convertase complex activin complex interleukin-35 complex
action filter_type
action find
entity prev_answer
relation part of
type cellular component
['classical-complement-pathway C3/C5 convertase complex', 'part of', {'concept': 'cellular component'}] ['activin complex', 'part of', {'concept': 'cellular component'}] ['interleukin-35 complex', 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:cellular_component . ?u property:part_of ?m . VALUES ( ?u ) { ( resource:classical-complement-pathway_C3/C5_convertase_complex ) ( resource:activin_complex ) ( resource:interleukin-35_complex ) } }
[]
cellular component
Q2914458 Q2914458 Q2914458
SYSTEM
extracellular space
Q2914458 Q2914458 Q2914458
(Q22325981,P361,c(Q5058355)) (Q22327407,P361,c(Q5058355)) (Q22327448,P361,c(Q5058355))
action filter_type
action find
entity prev_answer
relation P361
type Q5058355
[ANSWER], [ANSWER] and [ANSWER] are those ones a component of
['Q22325981', 'P361', {'concept': 'Q5058355'}] ['Q22327407', 'P361', {'concept': 'Q5058355'}] ['Q22327448', 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:Q5058355 . ?u property:P361 ?m . VALUES ( ?u ) { ( resource:Q22325981 ) ( resource:Q22327407 ) ( resource:Q22327448 ) } }
extracellular space extracellular space extracellular space
Extracellular space, extracellular space and extracellular space are those ones a component of
extracellular space extracellular space extracellular space
action filter_type
action find
entity prev_answer
relation part of
type cellular component
['classical-complement-pathway C3/C5 convertase complex', 'part of', {'concept': 'cellular component'}] ['activin complex', 'part of', {'concept': 'cellular component'}] ['interleukin-35 complex', 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:cellular_component . ?u property:part_of ?m . VALUES ( ?u ) { ( resource:classical-complement-pathway_C3/C5_convertase_complex ) ( resource:activin_complex ) ( resource:interleukin-35_complex ) } }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Single entity type
P361
Q5058355 Q5058355
USER
How many cellular components are atmost 16 cellular components a part of ?
(c(Q5058355),P361,c(Q5058355))
action count
action atmost
action find_reverse_tuple_counts
relation P361
type Q5058355
type Q5058355
value 16
[{'concept': 'Q5058355'}, 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ( COUNT ( ?q ) AS ?m ) WHERE { FILTER ( ?a <= 16 ) . { SELECT DISTINCT ?q ( COUNT ( ?v ) AS ?a ) WHERE { ?v property:P361 ?q . ?v rdf:type ontology:Q5058355 . ?q rdf:type ontology:Q5058355 } GROUP BY ?q } }
action count
action atmost
action find_reverse_tuple_counts
relation part of
type cellular component
type cellular component
value 16
[{'concept': 'cellular component'}, 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ( COUNT ( ?q ) AS ?m ) WHERE { FILTER ( ?a <= 16 ) . { SELECT DISTINCT ?q ( COUNT ( ?v ) AS ?a ) WHERE { ?v property:part_of ?q . ?v rdf:type ontology:cellular_component . ?q rdf:type ontology:cellular_component } GROUP BY ?q } }
[]
cellular component cellular component
SYSTEM
92
Q22329450 Q21106124 Q15320191 Q14912978 Q14864171 Q14876131 Q14878067 Q1604780 Q22327994 Q22327622 Q14860843 Q22327479 Q22327686 Q22327683 Q22330482 Q671136 Q22326188 Q22330431 Q189094 Q24576572 Q3824358 Q22329021 Q14864391 Q14864390 Q22328085 Q21095183 Q14329032 Q14905221 Q21199358 Q22327411 Q22327418 Q22329159 Q21109092 Q22329397 Q14864382 Q14353100 Q22327884 Q22329851 Q14863372 Q21423046 Q47263 Q22327652 Q22329848 Q180436 Q22329162 Q22329846 Q22329160 Q24570682 Q22330051 Q22327498 Q14911512 Q14819352 Q22327494 Q22327889 Q14762605 Q14864266 Q21750262 Q21198990 Q776995 Q22329401 Q24570673 Q14349538 Q22328884 Q22329076 Q22330231 Q5419646 Q21126899 Q22325459 Q22327714 Q22327805 Q21107481 Q22327505 Q21102478 Q22327502 Q22327500 Q138639 Q22329104 Q21095308 Q14864857 Q1065756 Q79927 Q180951 Q22327475 Q14864520 Q29548 Q22328105 Q14860546 Q14860540 Q14864866 Q899827 Q6414172 Q193825
(c(Q5058355),P361,c(Q5058355))
action count
action atmost
action find_reverse_tuple_counts
relation P361
type Q5058355
type Q5058355
value 16
[ANSWER]
[{'concept': 'Q5058355'}, 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ( COUNT ( ?q ) AS ?m ) WHERE { FILTER ( ?a <= 16 ) . { SELECT DISTINCT ?q ( COUNT ( ?v ) AS ?a ) WHERE { ?v property:P361 ?q . ?v rdf:type ontology:Q5058355 . ?q rdf:type ontology:Q5058355 } GROUP BY ?q } }
lateral part of cell viral capsid synaptic cleft mitochondrial nucleoid cell periphery compact myelin organelle membrane hemidesmosome rhoptry side of membrane nuclear outer membrane presynapse prospore membrane eisosome ventral disc supernumerary microtubule array synaptic vesicle aster unencapsulated part of cell cell surface presynaptic endosome membrane intracellular apical complex intracellular organelle synaptic vesicle membrane external encapsulating structure dendritic spine head endoplasmic reticulum membrane symbiont-containing vacuole membrane bacterial nucleoid extracellular space of host host ventral disc microtubule array nuclear outer membrane-endoplasmic reticulum membrane network cluster of actin-based cell projections presynaptic active zone cell projection cellular bud virus tail myelin sheath membrane-bounded organelle chloroplast whole membrane icosahedral viral capsid, collar cilium ventral disc icosahedral viral capsid, neck ventral disc overlap zone spine apparatus membrane dinoflagellate hypocone postsynaptic endocytic zone stereocilium respiratory chain postsynaptic endosome cell trailing edge midbody cell-substrate junction cell division site periplasmic space neuromuscular junction pellicle postsynaptic endosome membrane apical part of cell organellar ribosome plastid nucleoid dinoflagellate epicone excitatory synapse cell tip sperm individualization complex coated membrane photosynthetic membrane site of polarized growth presynaptic endosome other organism cell presynaptic active zone cytoplasmic component presynaptic endocytic zone peroxisome germ tube retromer complex cell leading edge melanosome endoplasmic reticulum chromatin postsynapse extrinsic component of membrane plasma membrane cell septum basal part of cell clathrin-coated pit cell body endomembrane system kinocilium extracellular matrix
92
action count
action atmost
action find_reverse_tuple_counts
relation part of
type cellular component
type cellular component
value 16
[{'concept': 'cellular component'}, 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ( COUNT ( ?q ) AS ?m ) WHERE { FILTER ( ?a <= 16 ) . { SELECT DISTINCT ?q ( COUNT ( ?v ) AS ?a ) WHERE { ?v property:part_of ?q . ?v rdf:type ontology:cellular_component . ?q rdf:type ontology:cellular_component } GROUP BY ?q } }
[]
Quantitative Reasoning (All)
Quantitative|Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P361
Q15989253 Q223557 Q5058355
USER
Which cellular components are parts of around 1 parts and physical objects ?
(c(Q5058355),P361,c(Q15989253)|c(Q223557))
action approx
action union
action find_tuple_counts
relation P361
type Q5058355
type Q15989253
action find_tuple_counts
relation P361
type Q5058355
type Q223557
value 1
[{'concept': 'Q5058355'}, 'P361', [{'concept': 'Q15989253'}, {'concept': 'Q223557'}]]
SELECT DISTINCT ?b WHERE { FILTER ( ?m = 1 ) . { SELECT DISTINCT ?b ( COUNT ( ?t ) AS ?m ) WHERE { { ?b rdf:type ontology:Q5058355 . ?t rdf:type ontology:Q15989253 . ?b property:P361 ?t } UNION { ?b property:P361 ?t . ?b rdf:type ontology:Q5058355 . ?t rdf:type ontology:Q223557 } } GROUP BY ?b } }
action approx
action union
action find_tuple_counts
relation part of
type cellular component
type part
action find_tuple_counts
relation part of
type cellular component
type physical object
value 1
[{'concept': 'cellular component'}, 'part of', [{'concept': 'part'}, {'concept': 'physical object'}]]
SELECT DISTINCT ?b WHERE { FILTER ( ?m = 1 ) . { SELECT DISTINCT ?b ( COUNT ( ?t ) AS ?m ) WHERE { { ?b rdf:type ontology:cellular_component . ?t rdf:type ontology:part . ?b property:part_of ?t } UNION { ?b property:part_of ?t . ?b rdf:type ontology:cellular_component . ?t rdf:type ontology:physical_object } } GROUP BY ?b } }
[]
part physical object cellular component
Q14912978 Q22329076 Q22326356
SYSTEM
mitochondrial nucleoid, plastid nucleoid, membrane protein complex
Q14912978 Q22326356 Q22327622 Q22327479 Q22327475 Q22326870 Q14914004 Q15320191 Q22328035 Q22329249 Q22327061 Q22326951 Q22328884 Q22328762 Q22327083 Q14873267 Q22329076 Q2914458 Q193825 Q22327423
(c(Q5058355),P361,c(Q15989253)|c(Q223557))
action approx
action union
action find_tuple_counts
relation P361
type Q5058355
type Q15989253
action find_tuple_counts
relation P361
type Q5058355
type Q223557
value 1
[ANSWERS] are parts of around 1 parts and physical objects
[{'concept': 'Q5058355'}, 'P361', [{'concept': 'Q15989253'}, {'concept': 'Q223557'}]]
SELECT DISTINCT ?b WHERE { FILTER ( ?m = 1 ) . { SELECT DISTINCT ?b ( COUNT ( ?t ) AS ?m ) WHERE { { ?b rdf:type ontology:Q5058355 . ?t rdf:type ontology:Q15989253 . ?b property:P361 ?t } UNION { ?b property:P361 ?t . ?b rdf:type ontology:Q5058355 . ?t rdf:type ontology:Q223557 } } GROUP BY ?b } }
mitochondrial nucleoid membrane protein complex side of membrane presynapse postsynapse DAPK1-calmodulin complex synaptic membrane synaptic cleft organelle lumen virion nucleoid extracellular isoamylase complex oxidoreductase complex organellar ribosome Dxr protein complex PTEN phosphatase complex cell-cell junction plastid nucleoid extracellular space extracellular matrix extracellular organelle
Mitochondrial nucleoid, plastid nucleoid and membrane protein complex are parts of around 1 parts and physical objects
mitochondrial nucleoid plastid nucleoid membrane protein complex
action approx
action union
action find_tuple_counts
relation part of
type cellular component
type part
action find_tuple_counts
relation part of
type cellular component
type physical object
value 1
[{'concept': 'cellular component'}, 'part of', [{'concept': 'part'}, {'concept': 'physical object'}]]
SELECT DISTINCT ?b WHERE { FILTER ( ?m = 1 ) . { SELECT DISTINCT ?b ( COUNT ( ?t ) AS ?m ) WHERE { { ?b rdf:type ontology:cellular_component . ?t rdf:type ontology:part . ?b property:part_of ?t } UNION { ?b property:part_of ?t . ?b rdf:type ontology:cellular_component . ?t rdf:type ontology:physical_object } } GROUP BY ?b } }
[]
Clarification
Comparative|More/Less|Single entity type|Indirect
P681
Q5058355 Q181394
USER
Which cellular components are the cell components of less number of nutrients than that cellular component ?
(c(Q181394),P681,c(Q5058355))
[{'concept': 'Q181394'}, 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?y WHERE { ?z property:P681 ?y . ?z rdf:type ontology:Q181394 . ?y rdf:type ontology:Q5058355 }
[{'concept': 'nutrient'}, 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?y WHERE { ?z property:cell_component ?y . ?z rdf:type ontology:nutrient . ?y rdf:type ontology:cellular_component }
[]
cellular component nutrient
Comparative|More/Less|Single entity type|Clarification
Q22326356
SYSTEM
Did you mean membrane protein complex ?
(c(Q181394),P681,c(Q5058355))
[ANSWER]
[{'concept': 'Q181394'}, 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?y WHERE { ?z property:P681 ?y . ?z rdf:type ontology:Q181394 . ?y rdf:type ontology:Q5058355 }
Did you mean membrane protein complex ?
membrane protein complex
[{'concept': 'nutrient'}, 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?y WHERE { ?z property:cell_component ?y . ?z rdf:type ontology:nutrient . ?y rdf:type ontology:cellular_component }
[]
Comparative Reasoning (All)
USER
No, I meant mitochondrial nucleoid. Could you tell me the answer for that?
(c(Q181394),P681,c(Q5058355))
Q14912978
[{'concept': 'Q181394'}, 'P681', {'concept': 'Q5058355'}]
[{'concept': 'nutrient'}, 'cell component', {'concept': 'cellular component'}]
[]
Q24576567 Q22326799 Q22327015
SYSTEM
perisynaptic extracellular matrix, alpha-1,6-mannosyltransferase complex, photosystem II oxygen evolving complex
Q7322268 Q21106124 Q21978575 Q21116315 Q21108229 Q22328732 Q21110192 Q21146508 Q14864978 Q24629101 Q14864977 Q14864971 Q1604780 Q21124326 Q21116899 Q14860843 Q22327688 Q22327686 Q14330626 Q22327683 Q21172343 Q21172341 Q24576567 Q21108045 Q22326188 Q21469807 Q14876131 Q24629096 Q22328493 Q21120634 Q14864391 Q14914004 Q21095183 Q14873624 Q21199165 Q14905221 Q22326802 Q21199358 Q21759948 Q21097473 Q21105647 Q21198643 Q21106212 Q21423046 Q14864382 Q22326799 Q14911512 Q22325164 Q26253851 Q21136996 Q21103154 Q22327404 Q22327654 Q22327015 Q21109092 Q22327525 Q14905147 Q22329412 Q22327092 Q21763002 Q15320191 Q21971414 Q22327884 Q21118409 Q14864266 Q21108411 Q21468808 Q21104759 Q14876059 Q21484280 Q22329407 Q22328605 Q14877492 Q22327128 Q21760978 Q21107992 Q22328801 Q5419646 Q21126899 Q14819441 Q1640852 Q21107481 Q21105674 Q21097505 Q22327033 Q14863683 Q21102478 Q22328819 Q21120639 Q14330629 Q776995 Q21971286 Q21105988 Q21095308 Q21115425 Q14864857 Q14888035 Q22326843 Q7168931 Q14906187 Q22327475 Q21112489 Q22328743 Q22328105 Q14860546 Q22328121 Q6414172 Q21109697 Q22327736 Q14906135 Q22326919 Q14882095 Q21095620 Q22327423
(c(Q181394),P681,c(Q5058355))
[ANSWERS] are the cell components of less number of nutrients than that cellular component
[{'concept': 'Q181394'}, 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?y WHERE { ?z property:P681 ?y . ?z rdf:type ontology:Q181394 . ?y rdf:type ontology:Q5058355 }
ribbon synapse viral capsid tripartite ATP-independent periplasmic transporter complex viral nucleocapsid subapical complex Pex17p-Pex14p docking complex organelle membrane contact site mucus layer lipopolysaccharide receptor complex glutamatergic synapse plasma membrane part succinate dehydrogenase complex hemidesmosome protein serine/threonine phosphatase complex complement component C1 complex nuclear outer membrane prospore membrane leading edge prospore membrane myelin sheath abaxonal region eisosome inner dense plaque of desmosome outer dense plaque of desmosome perisynaptic extracellular matrix molybdopterin synthase complex aster dolichyl-phosphate-mannose-protein mannosyltransferase complex compact myelin GABA-ergic synapse cell envelope Sec protein transport complex interleukin-12 complex intracellular organelle synaptic membrane dendritic spine head intercellular bridge type III protein secretion system complex symbiont-containing vacuole membrane endoplasmic reticulum palmitoyltransferase complex bacterial nucleoid NADH dehydrogenase complex cell pole transmembrane transporter complex riboflavin synthase complex GPI-anchor transamidase complex membrane-bounded organelle presynaptic active zone alpha-1,6-mannosyltransferase complex stereocilium protein-lipid complex integral component of spine apparatus membrane immunoglobulin complex, circulating inhibitory synapse ribonucleoprotein complex annulate lamellae photosystem II oxygen evolving complex nuclear outer membrane-endoplasmic reticulum membrane network cytoplasmic side of dendritic spine plasma membrane intrinsic component of membrane cytoophidium protein complex involved in cell adhesion polyphosphate kinase complex synaptic cleft plasma lipoprotein particle cellular bud hyaluranon cable cell-substrate junction CNTFR-CLCF1 complex retromer, tubulation complex perinuclear endoplasmic reticulum membrane phosphatidylinositol 3-kinase complex retromer, cargo-selective complex envelope PET complex lateral loop fatty acid beta-oxidation multienzyme complex type I protein secretion system complex ER ubiquitin ligase complex TRAPPI protein complex excitatory synapse cell tip fibrinogen complex Schmidt-Lanterman incisure site of polarized growth Nem1-Spo7 phosphatase complex dendritic spine neck DNA repair complex insulin-like growth factor binding protein complex other organism cell HICS complex interleukin-23 complex myelin sheath adaxonal region neuromuscular junction oligosaccharyltransferase complex stereocilium membrane retromer complex Ire1 complex cell leading edge protein-DNA complex Dsc E3 ubiquitin ligase complex perivitelline space CRLF-CLCF1 complex postsynapse stereocilium tip RNA cap binding complex cell septum basal part of cell intracellular immature spore kinocilium cyclin-dependent protein kinase 5 holoenzyme complex chaperone-mediated autophagy translocation complex contractile ring aspartate carbamoyltransferase complex angiogenin-PRI complex Flemming body extracellular organelle
Perisynaptic extracellular matrix, alpha-1,6-mannosyltransferase complex and photosystem II oxygen evolving complex are the cell components of less number of nutrients than that cellular component
perisynaptic extracellular matrix alpha-1,6-mannosyltransferase complex photosystem II oxygen evolving complex
[{'concept': 'nutrient'}, 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?y WHERE { ?z property:cell_component ?y . ?z rdf:type ontology:nutrient . ?y rdf:type ontology:cellular_component }
[]
Simple Question (Direct)
Simple Question|Mult. Entity|Indirect
Q24576567 Q22326799 Q22327015
P681
Q181394
USER
Which nutrients have perisynaptic extracellular matrix, alpha-1,6-mannosyltransferase complex and photosystem II oxygen evolving complex as cell component ?
(c(Q181394),P681,Q24576567) (c(Q181394),P681,Q22326799) (c(Q181394),P681,Q22327015)
action union
action filter_type
action find_reverse
entity Q24576567
relation P681
type Q181394
action filter_type
action find_reverse
entity Q22326799
relation P681
type Q181394
action filter_type
action find_reverse
entity Q22327015
relation P681
type Q181394
[{'concept': 'Q181394'}, 'P681', 'Q24576567'] [{'concept': 'Q181394'}, 'P681', 'Q22326799'] [{'concept': 'Q181394'}, 'P681', 'Q22327015']
SELECT DISTINCT ?n WHERE { VALUES ( ?d ) { ( resource:Q24576567 ) ( resource:Q22326799 ) } . ?n property:P681 ?d }
perisynaptic extracellular matrix alpha-1,6-mannosyltransferase complex photosystem II oxygen evolving complex
action union
action filter_type
action find_reverse
entity perisynaptic extracellular matrix
relation cell component
type nutrient
action filter_type
action find_reverse
entity alpha-1,6-mannosyltransferase complex
relation cell component
type nutrient
action filter_type
action find_reverse
entity photosystem II oxygen evolving complex
relation cell component
type nutrient
[{'concept': 'nutrient'}, 'cell component', 'perisynaptic extracellular matrix'] [{'concept': 'nutrient'}, 'cell component', 'alpha-1,6-mannosyltransferase complex'] [{'concept': 'nutrient'}, 'cell component', 'photosystem II oxygen evolving complex']
SELECT DISTINCT ?n WHERE { VALUES ( ?d ) { ( resource:perisynaptic_extracellular_matrix ) ( resource:alpha-1,6-mannosyltransferase_complex ) } . ?n property:cell_component ?d }
[]
nutrient
Q27547876 Q27549815 Q27549965
SYSTEM
Och1p YGL038C, alpha-1,6-mannosyltransferase YDR245W, Van1p YML115C
Q21172570 Q27547938 Q27548535 Q27549815 Q27547525 Q27549965 Q27547876 Q27549723 Q23613141 Q22291140 Q23477525 Q23477464 Q23476603 Q23569397 Q23572468 Q23611655
(c(Q181394),P681,Q24576567) (c(Q181394),P681,Q22326799) (c(Q181394),P681,Q22327015)
action union
action filter_type
action find_reverse
entity Q24576567
relation P681
type Q181394
action filter_type
action find_reverse
entity Q22326799
relation P681
type Q181394
action filter_type
action find_reverse
entity Q22327015
relation P681
type Q181394
[ANSWERS] have perisynaptic extracellular matrix, alpha-1,6-mannosyltransferase complex and photosystem II oxygen evolving complex as cell component
[{'concept': 'Q181394'}, 'P681', 'Q24576567'] [{'concept': 'Q181394'}, 'P681', 'Q22326799'] [{'concept': 'Q181394'}, 'P681', 'Q22327015']
SELECT DISTINCT ?n WHERE { VALUES ( ?d ) { ( resource:Q24576567 ) ( resource:Q22326799 ) } . ?n property:P681 ?d }
phosphoenolpyruvate-protein phosphotransferase    CTL0590 alpha-1,6-mannosyltransferase YJR075W Anp1p YEL036C alpha-1,6-mannosyltransferase YDR245W mannosyltransferase complex subunit MNN9 YPL050C Van1p YML115C Och1p YGL038C alpha-1,6-mannosyltransferase YJL183W photosystem II manganese-stabilizing polypeptide    tll0444 hypothetical protein    TDE0457 Photosystem II reaction centre W protein    Pro_0771 Photosystem II protein P PsbP    Pro_1097 Photosystem II manganese-stabilizing protein PsbO    Pro_0257 photosystem II manganese-stabilizing polypeptide    gvip499 hypothetical protein    gvip391 photosystem II oxygen-evolving complex 23K protein PsbP-like protein    tlr2075
Och1p YGL038C, alpha-1,6-mannosyltransferase YDR245W and Van1p YML115C have perisynaptic extracellular matrix, alpha-1,6-mannosyltransferase complex and photosystem II oxygen evolving complex as cell component
Och1p YGL038C alpha-1,6-mannosyltransferase YDR245W Van1p YML115C
action union
action filter_type
action find_reverse
entity perisynaptic extracellular matrix
relation cell component
type nutrient
action filter_type
action find_reverse
entity alpha-1,6-mannosyltransferase complex
relation cell component
type nutrient
action filter_type
action find_reverse
entity photosystem II oxygen evolving complex
relation cell component
type nutrient
[{'concept': 'nutrient'}, 'cell component', 'perisynaptic extracellular matrix'] [{'concept': 'nutrient'}, 'cell component', 'alpha-1,6-mannosyltransferase complex'] [{'concept': 'nutrient'}, 'cell component', 'photosystem II oxygen evolving complex']
SELECT DISTINCT ?n WHERE { VALUES ( ?d ) { ( resource:perisynaptic_extracellular_matrix ) ( resource:alpha-1,6-mannosyltransferase_complex ) } . ?n property:cell_component ?d }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q21109162
Q181394
USER
And how about Apoptotic protease-activating factor 1?
(Q21109162,P681,c(Q181394))
action filter_type
action find
entity Q21109162
relation P681
type Q181394
['Q21109162', 'P681', {'concept': 'Q181394'}]
SELECT DISTINCT ?y WHERE { resource:Q21109162 property:P681 ?y . ?y rdf:type ontology:Q181394 }
Apoptotic protease-activating factor 1
action filter_type
action find
entity Apoptotic protease-activating factor 1
relation cell component
type nutrient
['Apoptotic protease-activating factor 1', 'cell component', {'concept': 'nutrient'}]
SELECT DISTINCT ?y WHERE { resource:Apoptotic_protease-activating_factor_1 property:cell_component ?y . ?y rdf:type ontology:nutrient }
[]
nutrient
Q2061363
SYSTEM
apoptosome
Q2061363
(Q21109162,P681,c(Q181394))
action filter_type
action find
entity Q21109162
relation P681
type Q181394
[ANSWER]
['Q21109162', 'P681', {'concept': 'Q181394'}]
SELECT DISTINCT ?y WHERE { resource:Q21109162 property:P681 ?y . ?y rdf:type ontology:Q181394 }
apoptosome
apoptosome
action filter_type
action find
entity Apoptotic protease-activating factor 1
relation cell component
type nutrient
['Apoptotic protease-activating factor 1', 'cell component', {'concept': 'nutrient'}]
SELECT DISTINCT ?y WHERE { resource:Apoptotic_protease-activating_factor_1 property:cell_component ?y . ?y rdf:type ontology:nutrient }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q2061363 Q27745770
P681
Q181394
USER
Is that one a cell component of 3-oxoacyl-ACP reductase    MSMEG_6538 ?
(Q27745770,P681,Q2061363)
action is_in
entity Q27745770
action find
entity Q2061363
relation P681
['Q27745770', 'P681', 'Q2061363']
ASK WHERE { resource:Q2061363 property:P681 resource:Q27745770 }
apoptosome 3-oxoacyl-ACP reductase    MSMEG_6538
action is_in
entity 3-oxoacyl-ACP reductase    MSMEG_6538
action find
entity apoptosome
relation cell component
['3-oxoacyl-ACP reductase    MSMEG_6538', 'cell component', 'apoptosome']
ASK WHERE { resource:apoptosome property:cell_component resource:3-oxoacyl-ACP_reductase____MSMEG_6538 }
[]
nutrient
SYSTEM
NO
(Q27745770,P681,Q2061363)
action is_in
entity Q27745770
action find
entity Q2061363
relation P681
[ANSWER]
['Q27745770', 'P681', 'Q2061363']
ASK WHERE { resource:Q2061363 property:P681 resource:Q27745770 }
No
action is_in
entity 3-oxoacyl-ACP reductase    MSMEG_6538
action find
entity apoptosome
relation cell component
['3-oxoacyl-ACP reductase    MSMEG_6538', 'cell component', 'apoptosome']
ASK WHERE { resource:apoptosome property:cell_component resource:3-oxoacyl-ACP_reductase____MSMEG_6538 }
[]