Simple Question (Direct)
Simple Question
Q23611310
P682
Q1057
USER
What is the metabolic process that photosystem I reaction center protein subunit XI    tlr2404 is involved in ?
(Q23611310,P682,c(Q1057))
action filter_type
action find
entity Q23611310
relation P682
type Q1057
['Q23611310', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:Q1057 . resource:Q23611310 property:P682 ?u }
photosystem I reaction center protein subunit XI    tlr2404
action filter_type
action find
entity photosystem I reaction center protein subunit XI    tlr2404
relation biological process
type metabolic process
['photosystem I reaction center protein subunit XI    tlr2404', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:metabolic_process . resource:photosystem_I_reaction_center_protein_subunit_XI____tlr2404 property:biological_process ?u }
[]
metabolic process
Q21761098
SYSTEM
photosynthesis
Q21761098
(Q23611310,P682,c(Q1057))
action filter_type
action find
entity Q23611310
relation P682
type Q1057
The metabolic process that photosystem I reaction center protein subunit XI tlr2404 is involved in is l [ANSWER]
['Q23611310', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:Q1057 . resource:Q23611310 property:P682 ?u }
photosynthesis
The metabolic process that photosystem I reaction center protein subunit XI tlr2404 is involved in is l photosynthesis
photosynthesis
action filter_type
action find
entity photosystem I reaction center protein subunit XI    tlr2404
relation biological process
type metabolic process
['photosystem I reaction center protein subunit XI    tlr2404', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:metabolic_process . resource:photosystem_I_reaction_center_protein_subunit_XI____tlr2404 property:biological_process ?u }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23611310
P703
Q16521
USER
Where is photosystem I reaction center protein subunit XI    tlr2404 found ?
(Q23611310,P703,c(Q16521))
action filter_type
action find
entity Q23611310
relation P703
type Q16521
['Q23611310', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?r WHERE { ?r rdf:type ontology:Q16521 . resource:Q23611310 property:P703 ?r }
photosystem I reaction center protein subunit XI    tlr2404
action filter_type
action find
entity photosystem I reaction center protein subunit XI    tlr2404
relation found in taxon
type taxon
['photosystem I reaction center protein subunit XI    tlr2404', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?r WHERE { ?r rdf:type ontology:taxon . resource:photosystem_I_reaction_center_protein_subunit_XI____tlr2404 property:found_in_taxon ?r }
[]
taxon
Q21398614
SYSTEM
Thermosynechococcus elongatus BP-1
Q21398614
(Q23611310,P703,c(Q16521))
action filter_type
action find
entity Q23611310
relation P703
type Q16521
Photosystem I reaction center protein subunit XI tlr2404 is found in [ANSWER]
['Q23611310', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?r WHERE { ?r rdf:type ontology:Q16521 . resource:Q23611310 property:P703 ?r }
Thermosynechococcus elongatus BP-1
Photosystem I reaction center protein subunit XI tlr2404 is found in Thermosynechococcus elongatus BP-1
Thermosynechococcus elongatus BP-1
action filter_type
action find
entity photosystem I reaction center protein subunit XI    tlr2404
relation found in taxon
type taxon
['photosystem I reaction center protein subunit XI    tlr2404', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?r WHERE { ?r rdf:type ontology:taxon . resource:photosystem_I_reaction_center_protein_subunit_XI____tlr2404 property:found_in_taxon ?r }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23611310
P681
Q15989253
USER
Which part is a component of photosystem I reaction center protein subunit XI    tlr2404 ?
(Q23611310,P681,c(Q15989253))
action filter_type
action find
entity Q23611310
relation P681
type Q15989253
['Q23611310', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?g WHERE { resource:Q23611310 property:P681 ?g . ?g rdf:type ontology:Q15989253 }
photosystem I reaction center protein subunit XI    tlr2404
action filter_type
action find
entity photosystem I reaction center protein subunit XI    tlr2404
relation cell component
type part
['photosystem I reaction center protein subunit XI    tlr2404', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?g WHERE { resource:photosystem_I_reaction_center_protein_subunit_XI____tlr2404 property:cell_component ?g . ?g rdf:type ontology:part }
[]
part
Q14349455
SYSTEM
membrane
Q14349455
(Q23611310,P681,c(Q15989253))
action filter_type
action find
entity Q23611310
relation P681
type Q15989253
The [ANSWER] is a component of photosystem I reaction center protein subunit XI tlr2404
['Q23611310', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?g WHERE { resource:Q23611310 property:P681 ?g . ?g rdf:type ontology:Q15989253 }
membrane
The membrane is a component of photosystem I reaction center protein subunit XI tlr2404
membrane
action filter_type
action find
entity photosystem I reaction center protein subunit XI    tlr2404
relation cell component
type part
['photosystem I reaction center protein subunit XI    tlr2404', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?g WHERE { resource:photosystem_I_reaction_center_protein_subunit_XI____tlr2404 property:cell_component ?g . ?g rdf:type ontology:part }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q22293933
Q15989253
USER
And how about glycosyl transferase, group 4    TDE2670?
(Q22293933,P681,c(Q15989253))
action filter_type
action find
entity Q22293933
relation P681
type Q15989253
['Q22293933', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?l WHERE { ?l rdf:type ontology:Q15989253 . resource:Q22293933 property:P681 ?l }
glycosyl transferase, group 4    TDE2670
action filter_type
action find
entity glycosyl transferase, group 4    TDE2670
relation cell component
type part
['glycosyl transferase, group 4    TDE2670', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?l WHERE { ?l rdf:type ontology:part . resource:glycosyl_transferase,_group_4____TDE2670 property:cell_component ?l }
[]
part
Q14349455
SYSTEM
membrane
Q14349455
(Q22293933,P681,c(Q15989253))
action filter_type
action find
entity Q22293933
relation P681
type Q15989253
[ANSWER]
['Q22293933', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?l WHERE { ?l rdf:type ontology:Q15989253 . resource:Q22293933 property:P681 ?l }
membrane
membrane
action filter_type
action find
entity glycosyl transferase, group 4    TDE2670
relation cell component
type part
['glycosyl transferase, group 4    TDE2670', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?l WHERE { ?l rdf:type ontology:part . resource:glycosyl_transferase,_group_4____TDE2670 property:cell_component ?l }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q14349455
P361
Q5058355
USER
Which cellular components are a portion of that part ?
(c(Q5058355),P361,Q14349455)
action filter_type
action find_reverse
entity Q14349455
relation P361
type Q5058355
[{'concept': 'Q5058355'}, 'P361', 'Q14349455']
SELECT DISTINCT ?k WHERE { ?k property:P361 resource:Q14349455 . ?k rdf:type ontology:Q5058355 }
membrane
action filter_type
action find_reverse
entity membrane
relation part of
type cellular component
[{'concept': 'cellular component'}, 'part of', 'membrane']
SELECT DISTINCT ?k WHERE { ?k property:part_of resource:membrane . ?k rdf:type ontology:cellular_component }
[]
cellular component
Q22326356 Q22327622
SYSTEM
membrane protein complex, side of membrane
Q22326356 Q22327622
(c(Q5058355),P361,Q14349455)
action filter_type
action find_reverse
entity Q14349455
relation P361
type Q5058355
[ANSWERS] are a portion of that part
[{'concept': 'Q5058355'}, 'P361', 'Q14349455']
SELECT DISTINCT ?k WHERE { ?k property:P361 resource:Q14349455 . ?k rdf:type ontology:Q5058355 }
membrane protein complex side of membrane
Membrane protein complex and side of membrane are a portion of that part
membrane protein complex side of membrane
action filter_type
action find_reverse
entity membrane
relation part of
type cellular component
[{'concept': 'cellular component'}, 'part of', 'membrane']
SELECT DISTINCT ?k WHERE { ?k property:part_of resource:membrane . ?k rdf:type ontology:cellular_component }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Single entity type
Q22327043
P361
Q5058355 Q5058355
USER
How many cellular components are parts of approximately the same number of cellular components as plasma membrane-derived thylakoid ribulose bisphosphate carboxylase complex ?
(c(Q5058355),P361,c(Q5058355))
action count
action approx
action find_tuple_counts
relation P361
type Q5058355
type Q5058355
action count
action filter_type
action find
entity Q22327043
relation P361
type Q5058355
[{'concept': 'Q5058355'}, 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ( COUNT ( ?m ) AS ?w ) WHERE { { SELECT DISTINCT ?m ( COUNT ( ?p ) AS ?d ) WHERE { ?m property:P361 ?p . ?p rdf:type ontology:Q5058355 . ?m rdf:type ontology:Q5058355 } GROUP BY ?m } . { SELECT DISTINCT ( COUNT ( ?n ) AS ?l ) WHERE { resource:Q22327043 property:P361 ?n . ?n rdf:type ontology:Q5058355 } } . FILTER ( ?d = ?l ) }
plasma membrane-derived thylakoid ribulose bisphosphate carboxylase complex
action count
action approx
action find_tuple_counts
relation part of
type cellular component
type cellular component
action count
action filter_type
action find
entity plasma membrane-derived thylakoid ribulose bisphosphate carboxylase complex
relation part of
type cellular component
[{'concept': 'cellular component'}, 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ( COUNT ( ?m ) AS ?w ) WHERE { { SELECT DISTINCT ?m ( COUNT ( ?p ) AS ?d ) WHERE { ?m property:part_of ?p . ?p rdf:type ontology:cellular_component . ?m rdf:type ontology:cellular_component } GROUP BY ?m } . { SELECT DISTINCT ( COUNT ( ?n ) AS ?l ) WHERE { resource:plasma_membrane-derived_thylakoid_ribulose_bisphosphate_carboxylase_complex property:part_of ?n . ?n rdf:type ontology:cellular_component } } . FILTER ( ?d = ?l ) }
[]
cellular component cellular component
SYSTEM
74
Q22327392 Q22328737 Q14912978 Q21108229 Q22327015 Q22327805 Q14864978 Q14864971 Q22327396 Q22326356 Q22327622 Q24570686 Q22327479 Q22327475 Q21172343 Q21172341 Q22326870 Q22327043 Q22326188 Q22326831 Q14877465 Q22327676 Q22326089 Q22327469 Q24576579 Q14914004 Q21095183 Q14905221 Q22327389 Q21105647 Q15320191 Q21106212 Q22326799 Q22328904 Q22329850 Q26253851 Q22328035 Q22327397 Q22329249 Q22327525 Q22327526 Q22329848 Q22329843 Q22329844 Q22329845 Q22329846 Q24570682 Q14911512 Q24570689 Q22327468 Q22327061 Q22327803 Q24576582 Q22329409 Q22326951 Q22328884 Q22328762 Q22327083 Q14873267 Q22329076 Q22328801 Q22330049 Q2914458 Q22325454 Q21097505 Q16949578 Q22327686 Q22327108 Q22329467 Q22327341 Q6414172 Q22327736 Q193825 Q22327423
(c(Q5058355),P361,c(Q5058355))
action count
action approx
action find_tuple_counts
relation P361
type Q5058355
type Q5058355
action count
action filter_type
action find
entity Q22327043
relation P361
type Q5058355
[ANSWER]
[{'concept': 'Q5058355'}, 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ( COUNT ( ?m ) AS ?w ) WHERE { { SELECT DISTINCT ?m ( COUNT ( ?p ) AS ?d ) WHERE { ?m property:P361 ?p . ?p rdf:type ontology:Q5058355 . ?m rdf:type ontology:Q5058355 } GROUP BY ?m } . { SELECT DISTINCT ( COUNT ( ?n ) AS ?l ) WHERE { resource:Q22327043 property:P361 ?n . ?n rdf:type ontology:Q5058355 } } . FILTER ( ?d = ?l ) }
symbiont-containing vacuolar space iron-sulfur cluster assembly complex mitochondrial nucleoid subapical complex photosystem II oxygen evolving complex photosynthetic membrane lipopolysaccharide receptor complex succinate dehydrogenase complex scaffoldin complex membrane protein complex side of membrane extrinsic component of presynaptic membrane presynapse postsynapse inner dense plaque of desmosome outer dense plaque of desmosome DAPK1-calmodulin complex plasma membrane-derived thylakoid ribulose bisphosphate carboxylase complex aster nuclear membrane part receptor complex plasma membrane-derived thylakoid membrane contractile fiber part female germline ring canal inner rim intrinsic component of presynaptic membrane synaptic membrane dendritic spine head symbiont-containing vacuole membrane host cell part transmembrane transporter complex synaptic cleft GPI-anchor transamidase complex alpha-1,6-mannosyltransferase complex dosage compensation complex icosahedral viral capsid, spike integral component of spine apparatus membrane organelle lumen extracellular exosome complex virion nucleoid cytoplasmic side of dendritic spine plasma membrane subsynaptic reticulum icosahedral viral capsid, collar viral outer capsid viral intermediate capsid viral inner capsid icosahedral viral capsid, neck spine apparatus membrane stereocilium extrinsic component of postsynaptic membrane female germline ring canal outer rim extracellular isoamylase complex nuclear membrane complex Bqt3-Bqt4 intrinsic component of postsynaptic membrane extracellular core region of desmosome oxidoreductase complex organellar ribosome Dxr protein complex PTEN phosphatase complex cell-cell junction plastid nucleoid TRAPPI protein complex eif4e-cup complex extracellular space curli dendritic spine neck Autapse prospore membrane mitochondrial membrane part bacterial-type flagellum part plasma membrane-derived thylakoid photosystem II kinocilium chaperone-mediated autophagy translocation complex extracellular matrix extracellular organelle
74
action count
action approx
action find_tuple_counts
relation part of
type cellular component
type cellular component
action count
action filter_type
action find
entity plasma membrane-derived thylakoid ribulose bisphosphate carboxylase complex
relation part of
type cellular component
[{'concept': 'cellular component'}, 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ( COUNT ( ?m ) AS ?w ) WHERE { { SELECT DISTINCT ?m ( COUNT ( ?p ) AS ?d ) WHERE { ?m property:part_of ?p . ?p rdf:type ontology:cellular_component . ?m rdf:type ontology:cellular_component } GROUP BY ?m } . { SELECT DISTINCT ( COUNT ( ?n ) AS ?l ) WHERE { resource:plasma_membrane-derived_thylakoid_ribulose_bisphosphate_carboxylase_complex property:part_of ?n . ?n rdf:type ontology:cellular_component } } . FILTER ( ?d = ?l ) }
[]
Quantitative Reasoning (Count) (All)
Incomplete count-based ques
Q22329855
Q5058355
USER
And also tell me about virus tail, tube?
(Q22329855,P361,c(Q5058355))
action count
action filter_type
action find
entity Q22329855
relation P361
type Q5058355
['Q22329855', 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ( COUNT ( ?f ) AS ?u ) WHERE { resource:Q22329855 property:P361 ?f . ?f rdf:type ontology:Q5058355 }
virus tail, tube
action count
action filter_type
action find
entity virus tail, tube
relation part of
type cellular component
['virus tail, tube', 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ( COUNT ( ?f ) AS ?u ) WHERE { resource:virus_tail,_tube property:part_of ?f . ?f rdf:type ontology:cellular_component }
[]
cellular component
SYSTEM
1
(Q22329855,P361,c(Q5058355))
action count
action filter_type
action find
entity Q22329855
relation P361
type Q5058355
[ANSWER]
['Q22329855', 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ( COUNT ( ?f ) AS ?u ) WHERE { resource:Q22329855 property:P361 ?f . ?f rdf:type ontology:Q5058355 }
1
action count
action filter_type
action find
entity virus tail, tube
relation part of
type cellular component
['virus tail, tube', 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ( COUNT ( ?f ) AS ?u ) WHERE { resource:virus_tail,_tube property:part_of ?f . ?f rdf:type ontology:cellular_component }
[]