Simple Question (Direct)
Simple Question
Q21172802
P702
Q863908
USER
What encodes 30S ribosomal protein S19    CTL0786 ?
(Q21172802,P702,c(Q863908))
action filter_type
action find
entity Q21172802
relation P702
type Q863908
['Q21172802', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?g WHERE { resource:Q21172802 property:P702 ?g . ?g rdf:type ontology:Q863908 }
30S ribosomal protein S19    CTL0786
action filter_type
action find
entity 30S ribosomal protein S19    CTL0786
relation encoded by
type nucleic acid sequence
['30S ribosomal protein S19    CTL0786', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?g WHERE { resource:30S_ribosomal_protein_S19____CTL0786 property:encoded_by ?g . ?g rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q21171927
SYSTEM
30S ribosomal protein S19    CTL0786
Q21171927
(Q21172802,P702,c(Q863908))
action filter_type
action find
entity Q21172802
relation P702
type Q863908
[ANSWER]
['Q21172802', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?g WHERE { resource:Q21172802 property:P702 ?g . ?g rdf:type ontology:Q863908 }
30S ribosomal protein S19    CTL0786
30S ribosomal protein S19    CTL0786
action filter_type
action find
entity 30S ribosomal protein S19    CTL0786
relation encoded by
type nucleic acid sequence
['30S ribosomal protein S19    CTL0786', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?g WHERE { resource:30S_ribosomal_protein_S19____CTL0786 property:encoded_by ?g . ?g rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, subject is indirect
Q21171927 Q24106046
P688
Q181394
USER
Is thymidine phosphorylase    NGR_c34550 encoded by that nucleic acid sequence ?
(Q21171927,P688,Q24106046)
action is_in
entity Q24106046
action find
entity Q21171927
relation P688
['Q21171927', 'P688', 'Q24106046']
ASK WHERE { resource:Q21171927 property:P688 resource:Q24106046 }
30S ribosomal protein S19    CTL0786 thymidine phosphorylase    NGR_c34550
action is_in
entity thymidine phosphorylase    NGR_c34550
action find
entity 30S ribosomal protein S19    CTL0786
relation encodes
['30S ribosomal protein S19    CTL0786', 'encodes', 'thymidine phosphorylase    NGR_c34550']
ASK WHERE { resource:30S_ribosomal_protein_S19____CTL0786 property:encodes resource:thymidine_phosphorylase____NGR_c34550 }
[]
nutrient
SYSTEM
NO
(Q21171927,P688,Q24106046)
action is_in
entity Q24106046
action find
entity Q21171927
relation P688
[ANSWER]
['Q21171927', 'P688', 'Q24106046']
ASK WHERE { resource:Q21171927 property:P688 resource:Q24106046 }
No
action is_in
entity thymidine phosphorylase    NGR_c34550
action find
entity 30S ribosomal protein S19    CTL0786
relation encodes
['30S ribosomal protein S19    CTL0786', 'encodes', 'thymidine phosphorylase    NGR_c34550']
ASK WHERE { resource:30S_ribosomal_protein_S19____CTL0786 property:encodes resource:thymidine_phosphorylase____NGR_c34550 }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21171927
P703
Q16521
USER
Which taxon is that nucleic acid sequence found in ?
action filter_type
action find
entity Q21171927
relation P703
type Q16521
SELECT DISTINCT ?u WHERE { resource:Q21171927 property:P703 ?u . ?u rdf:type ontology:Q16521 }
30S ribosomal protein S19    CTL0786
action filter_type
action find
entity 30S ribosomal protein S19    CTL0786
relation found in taxon
type taxon
SELECT DISTINCT ?u WHERE { resource:30S_ribosomal_protein_S19____CTL0786 property:found_in_taxon ?u . ?u rdf:type ontology:taxon }
[]
taxon
Q20800254
SYSTEM
Chlamydia trachomatis 434/BU
Q20800254
action filter_type
action find
entity Q21171927
relation P703
type Q16521
[ANSWER]
SELECT DISTINCT ?u WHERE { resource:Q21171927 property:P703 ?u . ?u rdf:type ontology:Q16521 }
Chlamydia trachomatis 434/BU
Chlamydia trachomatis 434/BU
action filter_type
action find
entity 30S ribosomal protein S19    CTL0786
relation found in taxon
type taxon
SELECT DISTINCT ?u WHERE { resource:30S_ribosomal_protein_S19____CTL0786 property:found_in_taxon ?u . ?u rdf:type ontology:taxon }
[]
Logical Reasoning (All)
Logical|Intersection|Multiple_Relation
Q23309229 Q24106046
P703 P688
Q863908
USER
Which nucleic acid sequences encodes thymidine phosphorylase    NGR_c34550 and species belongs to the taxon Sinorhizobium fredii NGR234 ?
AND((c(Q863908),P688,Q24106046), (c(Q863908),P703,Q23309229))
action filter_type
action intersection
action find_reverse
entity Q24106046
relation P688
action find_reverse
entity Q23309229
relation P703
type Q863908
{'AND': [[{'concept': 'Q863908'}, 'P688', 'Q24106046'], [{'concept': 'Q863908'}, 'P703', 'Q23309229']]}
SELECT DISTINCT ?j WHERE { ?j property:P688 resource:Q24106046 . ?j property:P703 resource:Q23309229 . ?j rdf:type ontology:Q863908 }
Sinorhizobium fredii NGR234 thymidine phosphorylase    NGR_c34550
action filter_type
action intersection
action find_reverse
entity thymidine phosphorylase    NGR_c34550
relation encodes
action find_reverse
entity Sinorhizobium fredii NGR234
relation found in taxon
type nucleic acid sequence
{'AND': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'thymidine phosphorylase    NGR_c34550'], [{'concept': 'nucleic acid sequence'}, 'found in taxon', 'Sinorhizobium fredii NGR234']]}
SELECT DISTINCT ?j WHERE { ?j property:encodes resource:thymidine_phosphorylase____NGR_c34550 . ?j property:found_in_taxon resource:Sinorhizobium_fredii_NGR234 . ?j rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23321868
SYSTEM
thymidine phosphorylase    NGR_c34550
Q23321868
AND((c(Q863908),P688,Q24106046), (c(Q863908),P703,Q23309229))
action filter_type
action intersection
action find_reverse
entity Q24106046
relation P688
action find_reverse
entity Q23309229
relation P703
type Q863908
[ANSWER]
{'AND': [[{'concept': 'Q863908'}, 'P688', 'Q24106046'], [{'concept': 'Q863908'}, 'P703', 'Q23309229']]}
SELECT DISTINCT ?j WHERE { ?j property:P688 resource:Q24106046 . ?j property:P703 resource:Q23309229 . ?j rdf:type ontology:Q863908 }
thymidine phosphorylase    NGR_c34550
thymidine phosphorylase    NGR_c34550
action filter_type
action intersection
action find_reverse
entity thymidine phosphorylase    NGR_c34550
relation encodes
action find_reverse
entity Sinorhizobium fredii NGR234
relation found in taxon
type nucleic acid sequence
{'AND': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'thymidine phosphorylase    NGR_c34550'], [{'concept': 'nucleic acid sequence'}, 'found in taxon', 'Sinorhizobium fredii NGR234']]}
SELECT DISTINCT ?j WHERE { ?j property:encodes resource:thymidine_phosphorylase____NGR_c34550 . ?j property:found_in_taxon resource:Sinorhizobium_fredii_NGR234 . ?j rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q23321868 Q22292886
P702
Q181394
USER
Is pentapeptide repeat-containing protein    TDE1228 encoded by that nucleic acid sequence ?
(Q22292886,P702,Q23321868)
action is_in
entity Q22292886
action find
entity Q23321868
relation P702
['Q22292886', 'P702', 'Q23321868']
ASK WHERE { resource:Q23321868 property:P702 resource:Q22292886 }
thymidine phosphorylase    NGR_c34550 pentapeptide repeat-containing protein    TDE1228
action is_in
entity pentapeptide repeat-containing protein    TDE1228
action find
entity thymidine phosphorylase    NGR_c34550
relation encoded by
['pentapeptide repeat-containing protein    TDE1228', 'encoded by', 'thymidine phosphorylase    NGR_c34550']
ASK WHERE { resource:thymidine_phosphorylase____NGR_c34550 property:encoded_by resource:pentapeptide_repeat-containing_protein____TDE1228 }
[]
nutrient
SYSTEM
NO
(Q22292886,P702,Q23321868)
action is_in
entity Q22292886
action find
entity Q23321868
relation P702
[ANSWER]
['Q22292886', 'P702', 'Q23321868']
ASK WHERE { resource:Q23321868 property:P702 resource:Q22292886 }
No
action is_in
entity pentapeptide repeat-containing protein    TDE1228
action find
entity thymidine phosphorylase    NGR_c34550
relation encoded by
['pentapeptide repeat-containing protein    TDE1228', 'encoded by', 'thymidine phosphorylase    NGR_c34550']
ASK WHERE { resource:thymidine_phosphorylase____NGR_c34550 property:encoded_by resource:pentapeptide_repeat-containing_protein____TDE1228 }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q21171927 Q21172802
P688
Q181394
USER
Is 30S ribosomal protein S19    CTL0786 an encoding of 30S ribosomal protein S19    CTL0786 ?
(Q21171927,P688,Q21172802)
action is_in
entity Q21172802
action find
entity Q21171927
relation P688
['Q21171927', 'P688', 'Q21172802']
ASK WHERE { resource:Q21171927 property:P688 resource:Q21172802 }
30S ribosomal protein S19    CTL0786 30S ribosomal protein S19    CTL0786
action is_in
entity 30S ribosomal protein S19    CTL0786
action find
entity 30S ribosomal protein S19    CTL0786
relation encodes
['30S ribosomal protein S19    CTL0786', 'encodes', '30S ribosomal protein S19    CTL0786']
ASK WHERE { resource:30S_ribosomal_protein_S19____CTL0786 property:encodes resource:30S_ribosomal_protein_S19____CTL0786 }
[]
nutrient
SYSTEM
YES
(Q21171927,P688,Q21172802)
action is_in
entity Q21172802
action find
entity Q21171927
relation P688
[ANSWER]
['Q21171927', 'P688', 'Q21172802']
ASK WHERE { resource:Q21171927 property:P688 resource:Q21172802 }
Yes
action is_in
entity 30S ribosomal protein S19    CTL0786
action find
entity 30S ribosomal protein S19    CTL0786
relation encodes
['30S ribosomal protein S19    CTL0786', 'encodes', '30S ribosomal protein S19    CTL0786']
ASK WHERE { resource:30S_ribosomal_protein_S19____CTL0786 property:encodes resource:30S_ribosomal_protein_S19____CTL0786 }
[]
Verification (Boolean) (All)
Verification|3 entities, all direct, 2 are query entities
Q20800254 Q694552 Q484797
P1542
Q2057971
USER
Is Chlamydia trachomatis 434/BU the cause of lymphogranuloma venereum and anus disease ?
(Q20800254,P1542,Q694552) (Q20800254,P1542,Q484797)
action is_in
entity Q20800254
action intersection
action find_reverse
entity Q694552
relation P1542
action find_reverse
entity Q484797
relation P1542
['Q20800254', 'P1542', 'Q694552'] ['Q20800254', 'P1542', 'Q484797']
ASK WHERE { resource:Q20800254 property:P1542 resource:Q484797 . resource:Q20800254 property:P1542 resource:Q694552 }
Chlamydia trachomatis 434/BU lymphogranuloma venereum anus disease
action is_in
entity Chlamydia trachomatis 434/BU
action intersection
action find_reverse
entity lymphogranuloma venereum
relation cause of
action find_reverse
entity anus disease
relation cause of
['Chlamydia trachomatis 434/BU', 'cause of', 'lymphogranuloma venereum'] ['Chlamydia trachomatis 434/BU', 'cause of', 'anus disease']
ASK WHERE { resource:Chlamydia_trachomatis_434/BU property:cause_of resource:anus_disease . resource:Chlamydia_trachomatis_434/BU property:cause_of resource:lymphogranuloma_venereum }
[]
health problem
SYSTEM
YES and NO respectively
(Q20800254,P1542,Q694552) (Q20800254,P1542,Q484797)
action is_in
entity Q20800254
action intersection
action find_reverse
entity Q694552
relation P1542
action find_reverse
entity Q484797
relation P1542
[ANSWER]
['Q20800254', 'P1542', 'Q694552'] ['Q20800254', 'P1542', 'Q484797']
ASK WHERE { resource:Q20800254 property:P1542 resource:Q484797 . resource:Q20800254 property:P1542 resource:Q694552 }
YES and NO respectively
action is_in
entity Chlamydia trachomatis 434/BU
action intersection
action find_reverse
entity lymphogranuloma venereum
relation cause of
action find_reverse
entity anus disease
relation cause of
['Chlamydia trachomatis 434/BU', 'cause of', 'lymphogranuloma venereum'] ['Chlamydia trachomatis 434/BU', 'cause of', 'anus disease']
ASK WHERE { resource:Chlamydia_trachomatis_434/BU property:cause_of resource:anus_disease . resource:Chlamydia_trachomatis_434/BU property:cause_of resource:lymphogranuloma_venereum }
[]
Verification (Boolean) (All)
Verification|3 entities, all direct, 2 are query entities
Q21171927 Q23543410 Q21172802
P688
Q181394
USER
Does 30S ribosomal protein S19    CTL0786 encode aldehyde dehydrogenase    BMAA0543 and 30S ribosomal protein S19    CTL0786 ?
(Q21171927,P688,Q23543410) (Q21171927,P688,Q21172802)
action is_in
entity Q21171927
action intersection
action find_reverse
entity Q23543410
relation P688
action find_reverse
entity Q21172802
relation P688
['Q21171927', 'P688', 'Q23543410'] ['Q21171927', 'P688', 'Q21172802']
ASK WHERE { resource:Q21171927 property:P688 resource:Q23543410 . resource:Q21171927 property:P688 resource:Q21172802 }
30S ribosomal protein S19    CTL0786 aldehyde dehydrogenase    BMAA0543 30S ribosomal protein S19    CTL0786
action is_in
entity 30S ribosomal protein S19    CTL0786
action intersection
action find_reverse
entity aldehyde dehydrogenase    BMAA0543
relation encodes
action find_reverse
entity 30S ribosomal protein S19    CTL0786
relation encodes
['30S ribosomal protein S19    CTL0786', 'encodes', 'aldehyde dehydrogenase    BMAA0543'] ['30S ribosomal protein S19    CTL0786', 'encodes', '30S ribosomal protein S19    CTL0786']
ASK WHERE { resource:30S_ribosomal_protein_S19____CTL0786 property:encodes resource:aldehyde_dehydrogenase____BMAA0543 . resource:30S_ribosomal_protein_S19____CTL0786 property:encodes resource:30S_ribosomal_protein_S19____CTL0786 }
[]
nutrient
SYSTEM
NO and YES respectively
(Q21171927,P688,Q23543410) (Q21171927,P688,Q21172802)
action is_in
entity Q21171927
action intersection
action find_reverse
entity Q23543410
relation P688
action find_reverse
entity Q21172802
relation P688
[ANSWER]
['Q21171927', 'P688', 'Q23543410'] ['Q21171927', 'P688', 'Q21172802']
ASK WHERE { resource:Q21171927 property:P688 resource:Q23543410 . resource:Q21171927 property:P688 resource:Q21172802 }
NO and YES respectively
action is_in
entity 30S ribosomal protein S19    CTL0786
action intersection
action find_reverse
entity aldehyde dehydrogenase    BMAA0543
relation encodes
action find_reverse
entity 30S ribosomal protein S19    CTL0786
relation encodes
['30S ribosomal protein S19    CTL0786', 'encodes', 'aldehyde dehydrogenase    BMAA0543'] ['30S ribosomal protein S19    CTL0786', 'encodes', '30S ribosomal protein S19    CTL0786']
ASK WHERE { resource:30S_ribosomal_protein_S19____CTL0786 property:encodes resource:aldehyde_dehydrogenase____BMAA0543 . resource:30S_ribosomal_protein_S19____CTL0786 property:encodes resource:30S_ribosomal_protein_S19____CTL0786 }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q20800254 Q189580
P1542
Q2057971
USER
Does Chlamydia trachomatis 434/BU result in acromegaly ?
(Q20800254,P1542,Q189580)
action is_in
entity Q189580
action find
entity Q20800254
relation P1542
['Q20800254', 'P1542', 'Q189580']
ASK WHERE { resource:Q20800254 property:P1542 resource:Q189580 }
Chlamydia trachomatis 434/BU acromegaly
action is_in
entity acromegaly
action find
entity Chlamydia trachomatis 434/BU
relation cause of
['Chlamydia trachomatis 434/BU', 'cause of', 'acromegaly']
ASK WHERE { resource:Chlamydia_trachomatis_434/BU property:cause_of resource:acromegaly }
[]
health problem
SYSTEM
NO
(Q20800254,P1542,Q189580)
action is_in
entity Q189580
action find
entity Q20800254
relation P1542
[ANSWER]
['Q20800254', 'P1542', 'Q189580']
ASK WHERE { resource:Q20800254 property:P1542 resource:Q189580 }
No
action is_in
entity acromegaly
action find
entity Chlamydia trachomatis 434/BU
relation cause of
['Chlamydia trachomatis 434/BU', 'cause of', 'acromegaly']
ASK WHERE { resource:Chlamydia_trachomatis_434/BU property:cause_of resource:acromegaly }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q21171927 Q23577388
P688
Q181394
USER
Does 30S ribosomal protein S19    CTL0786 encode sugar ABC transporter permease    AMED_1081 ?
(Q21171927,P688,Q23577388)
action is_in
entity Q23577388
action find
entity Q21171927
relation P688
['Q21171927', 'P688', 'Q23577388']
ASK WHERE { resource:Q21171927 property:P688 resource:Q23577388 }
30S ribosomal protein S19    CTL0786 sugar ABC transporter permease    AMED_1081
action is_in
entity sugar ABC transporter permease    AMED_1081
action find
entity 30S ribosomal protein S19    CTL0786
relation encodes
['30S ribosomal protein S19    CTL0786', 'encodes', 'sugar ABC transporter permease    AMED_1081']
ASK WHERE { resource:30S_ribosomal_protein_S19____CTL0786 property:encodes resource:sugar_ABC_transporter_permease____AMED_1081 }
[]
nutrient
SYSTEM
NO
(Q21171927,P688,Q23577388)
action is_in
entity Q23577388
action find
entity Q21171927
relation P688
[ANSWER]
['Q21171927', 'P688', 'Q23577388']
ASK WHERE { resource:Q21171927 property:P688 resource:Q23577388 }
No
action is_in
entity sugar ABC transporter permease    AMED_1081
action find
entity 30S ribosomal protein S19    CTL0786
relation encodes
['30S ribosomal protein S19    CTL0786', 'encodes', 'sugar ABC transporter permease    AMED_1081']
ASK WHERE { resource:30S_ribosomal_protein_S19____CTL0786 property:encodes resource:sugar_ABC_transporter_permease____AMED_1081 }
[]