Simple Question (Direct)
Simple Question
Q27740393
P680
Q44424
USER
Which chemical bonds represent molecular function of cytochrome C reductase cytochrome C subunit    ML0881 ?
(Q27740393,P680,c(Q44424))
action filter_type
action find
entity Q27740393
relation P680
type Q44424
['Q27740393', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?o WHERE { resource:Q27740393 property:P680 ?o . ?o rdf:type ontology:Q44424 }
cytochrome C reductase cytochrome C subunit    ML0881
action filter_type
action find
entity cytochrome C reductase cytochrome C subunit    ML0881
relation molecular function
type chemical bond
['cytochrome C reductase cytochrome C subunit    ML0881', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?o WHERE { resource:cytochrome_C_reductase_cytochrome_C_subunit____ML0881 property:molecular_function ?o . ?o rdf:type ontology:chemical_bond }
[]
chemical bond
Q13667380 Q14358439
SYSTEM
metal ion binding, iron ion binding
Q13667380 Q14358439
(Q27740393,P680,c(Q44424))
action filter_type
action find
entity Q27740393
relation P680
type Q44424
The [ANSWERS] represent molecular function of cytochrome C reductase cytochrome C subunit ML0881
['Q27740393', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?o WHERE { resource:Q27740393 property:P680 ?o . ?o rdf:type ontology:Q44424 }
metal ion binding iron ion binding
The metal ion binding and iron ion binding represent molecular function of cytochrome C reductase cytochrome C subunit ML0881
metal ion binding iron ion binding
action filter_type
action find
entity cytochrome C reductase cytochrome C subunit    ML0881
relation molecular function
type chemical bond
['cytochrome C reductase cytochrome C subunit    ML0881', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?o WHERE { resource:cytochrome_C_reductase_cytochrome_C_subunit____ML0881 property:molecular_function ?o . ?o rdf:type ontology:chemical_bond }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q27740393
P703
Q631147
USER
What is the taxon to which cytochrome C reductase cytochrome C subunit    ML0881 belongs to ?
(Q27740393,P703,c(Q631147))
action filter_type
action find
entity Q27740393
relation P703
type Q631147
['Q27740393', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?o WHERE { resource:Q27740393 property:P703 ?o . ?o rdf:type ontology:Q631147 }
cytochrome C reductase cytochrome C subunit    ML0881
action filter_type
action find
entity cytochrome C reductase cytochrome C subunit    ML0881
relation found in taxon
type infraspecific name
['cytochrome C reductase cytochrome C subunit    ML0881', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?o WHERE { resource:cytochrome_C_reductase_cytochrome_C_subunit____ML0881 property:found_in_taxon ?o . ?o rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102985
SYSTEM
Mycobacterium leprae TN
Q21102985
(Q27740393,P703,c(Q631147))
action filter_type
action find
entity Q27740393
relation P703
type Q631147
[ANSWER]
['Q27740393', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?o WHERE { resource:Q27740393 property:P703 ?o . ?o rdf:type ontology:Q631147 }
Mycobacterium leprae TN
Mycobacterium leprae TN
Mycobacterium leprae TN
action filter_type
action find
entity cytochrome C reductase cytochrome C subunit    ML0881
relation found in taxon
type infraspecific name
['cytochrome C reductase cytochrome C subunit    ML0881', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?o WHERE { resource:cytochrome_C_reductase_cytochrome_C_subunit____ML0881 property:found_in_taxon ?o . ?o rdf:type ontology:infraspecific_name }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q27740393
P682
Q1057
USER
Which metabolic process is that nutrient involved in ?
(Q21102985,P682,c(Q1057))
action filter_type
action find
entity Q27740393
relation P682
type Q1057
['Q21102985', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?x WHERE { resource:Q27740393 property:P682 ?x . ?x rdf:type ontology:Q1057 }
cytochrome C reductase cytochrome C subunit    ML0881
action filter_type
action find
entity cytochrome C reductase cytochrome C subunit    ML0881
relation biological process
type metabolic process
['Mycobacterium leprae TN', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?x WHERE { resource:cytochrome_C_reductase_cytochrome_C_subunit____ML0881 property:biological_process ?x . ?x rdf:type ontology:metabolic_process }
[]
metabolic process
Q14349764
SYSTEM
oxidation-reduction process
Q14349764
(Q21102985,P682,c(Q1057))
action filter_type
action find
entity Q27740393
relation P682
type Q1057
That nutrient is an [ANSWER]
['Q21102985', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?x WHERE { resource:Q27740393 property:P682 ?x . ?x rdf:type ontology:Q1057 }
oxidation-reduction process
That nutrient is an oxidation-reduction process
oxidation-reduction process
action filter_type
action find
entity cytochrome C reductase cytochrome C subunit    ML0881
relation biological process
type metabolic process
['Mycobacterium leprae TN', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?x WHERE { resource:cytochrome_C_reductase_cytochrome_C_subunit____ML0881 property:biological_process ?x . ?x rdf:type ontology:metabolic_process }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q27740393
P681
Q15989253
USER
Which is the cell component of that nutrient ?
(Q14349764,P681,c(Q15989253))
action filter_type
action find
entity Q27740393
relation P681
type Q15989253
['Q14349764', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?t WHERE { resource:Q27740393 property:P681 ?t . ?t rdf:type ontology:Q15989253 }
cytochrome C reductase cytochrome C subunit    ML0881
action filter_type
action find
entity cytochrome C reductase cytochrome C subunit    ML0881
relation cell component
type part
['oxidation-reduction process', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?t WHERE { resource:cytochrome_C_reductase_cytochrome_C_subunit____ML0881 property:cell_component ?t . ?t rdf:type ontology:part }
[]
part
Q14349455
SYSTEM
membrane
Q14349455
(Q14349764,P681,c(Q15989253))
action filter_type
action find
entity Q27740393
relation P681
type Q15989253
The [ANSWER] is the cell component of that nutrient
['Q14349764', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?t WHERE { resource:Q27740393 property:P681 ?t . ?t rdf:type ontology:Q15989253 }
membrane
The membrane is the cell component of that nutrient
membrane
action filter_type
action find
entity cytochrome C reductase cytochrome C subunit    ML0881
relation cell component
type part
['oxidation-reduction process', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?t WHERE { resource:cytochrome_C_reductase_cytochrome_C_subunit____ML0881 property:cell_component ?t . ?t rdf:type ontology:part }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q14349455 Q21104796
P681
Q181394
USER
Does Abelson tyrosine-protein kinase 2 have that part as its cell component ?
(Q21104796,P681,Q14349455)
action is_in
entity Q21104796
action find
entity Q14349455
relation P681
['Q21104796', 'P681', 'Q14349455']
ASK WHERE { resource:Q14349455 property:P681 resource:Q21104796 }
membrane Abelson tyrosine-protein kinase 2
action is_in
entity Abelson tyrosine-protein kinase 2
action find
entity membrane
relation cell component
['Abelson tyrosine-protein kinase 2', 'cell component', 'membrane']
ASK WHERE { resource:membrane property:cell_component resource:Abelson_tyrosine-protein_kinase_2 }
[]
nutrient
SYSTEM
NO
(Q21104796,P681,Q14349455)
action is_in
entity Q21104796
action find
entity Q14349455
relation P681
[ANSWER]
['Q21104796', 'P681', 'Q14349455']
ASK WHERE { resource:Q14349455 property:P681 resource:Q21104796 }
No
action is_in
entity Abelson tyrosine-protein kinase 2
action find
entity membrane
relation cell component
['Abelson tyrosine-protein kinase 2', 'cell component', 'membrane']
ASK WHERE { resource:membrane property:cell_component resource:Abelson_tyrosine-protein_kinase_2 }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23490224 Q27740393
P702
Q863908
USER
Which nucleic acid sequences are the gene that encodes cytochrome C reductase cytochrome C subunit    ML0881 or accessory pilus subunit    SSUBM407_1955 ?
OR((Q27740393,P702,c(Q863908)), (Q23490224,P702,c(Q863908)))
action filter_type
action union
action find
entity Q27740393
relation P702
action find
entity Q23490224
relation P702
type Q863908
{'OR': [['Q27740393', 'P702', {'concept': 'Q863908'}], ['Q23490224', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?l WHERE { { { resource:Q27740393 property:P702 ?l } UNION { resource:Q23490224 property:P702 ?l } } . ?l rdf:type ontology:Q863908 }
accessory pilus subunit    SSUBM407_1955 cytochrome C reductase cytochrome C subunit    ML0881
action filter_type
action union
action find
entity cytochrome C reductase cytochrome C subunit    ML0881
relation encoded by
action find
entity accessory pilus subunit    SSUBM407_1955
relation encoded by
type nucleic acid sequence
{'OR': [['cytochrome C reductase cytochrome C subunit    ML0881', 'encoded by', {'concept': 'nucleic acid sequence'}], ['accessory pilus subunit    SSUBM407_1955', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?l WHERE { { { resource:cytochrome_C_reductase_cytochrome_C_subunit____ML0881 property:encoded_by ?l } UNION { resource:accessory_pilus_subunit____SSUBM407_1955 property:encoded_by ?l } } . ?l rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23216694 Q23263443
SYSTEM
accessory pilus subunit    SSUBM407_1955, cytochrome C reductase cytochrome C subunit    ML0881
Q23216694 Q23263443
OR((Q27740393,P702,c(Q863908)), (Q23490224,P702,c(Q863908)))
action filter_type
action union
action find
entity Q27740393
relation P702
action find
entity Q23490224
relation P702
type Q863908
[ANSWERS]
{'OR': [['Q27740393', 'P702', {'concept': 'Q863908'}], ['Q23490224', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?l WHERE { { { resource:Q27740393 property:P702 ?l } UNION { resource:Q23490224 property:P702 ?l } } . ?l rdf:type ontology:Q863908 }
accessory pilus subunit    SSUBM407_1955 cytochrome C reductase cytochrome C subunit    ML0881
Accessory pilus subunit SSUBM407 1955 and cytochrome C reductase cytochrome C subunit ML0881 are the gene that encodes cytochrome C reductase cytochrome C subunit ML0881 or accessory pilus subunit SSUBM407_1955
accessory pilus subunit    SSUBM407_1955 cytochrome C reductase cytochrome C subunit    ML0881
action filter_type
action union
action find
entity cytochrome C reductase cytochrome C subunit    ML0881
relation encoded by
action find
entity accessory pilus subunit    SSUBM407_1955
relation encoded by
type nucleic acid sequence
{'OR': [['cytochrome C reductase cytochrome C subunit    ML0881', 'encoded by', {'concept': 'nucleic acid sequence'}], ['accessory pilus subunit    SSUBM407_1955', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?l WHERE { { { resource:cytochrome_C_reductase_cytochrome_C_subunit____ML0881 property:encoded_by ?l } UNION { resource:accessory_pilus_subunit____SSUBM407_1955 property:encoded_by ?l } } . ?l rdf:type ontology:nucleic_acid_sequence }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23384900 Q23216694
P702
Q181394
USER
Which nutrients do accessory pilus subunit    SSUBM407_1955 or hypothetical protein    BT9727_2393 encode ?
OR((c(Q181394),P702,Q23216694), (c(Q181394),P702,Q23384900))
action filter_type
action union
action find_reverse
entity Q23216694
relation P702
action find_reverse
entity Q23384900
relation P702
type Q181394
{'OR': [[{'concept': 'Q181394'}, 'P702', 'Q23216694'], [{'concept': 'Q181394'}, 'P702', 'Q23384900']]}
SELECT DISTINCT ?u WHERE { { { ?u property:P702 resource:Q23216694 } UNION { ?u property:P702 resource:Q23384900 } } . ?u rdf:type ontology:Q181394 }
hypothetical protein    BT9727_2393 accessory pilus subunit    SSUBM407_1955
action filter_type
action union
action find_reverse
entity accessory pilus subunit    SSUBM407_1955
relation encoded by
action find_reverse
entity hypothetical protein    BT9727_2393
relation encoded by
type nutrient
{'OR': [[{'concept': 'nutrient'}, 'encoded by', 'accessory pilus subunit    SSUBM407_1955'], [{'concept': 'nutrient'}, 'encoded by', 'hypothetical protein    BT9727_2393']]}
SELECT DISTINCT ?u WHERE { { { ?u property:encoded_by resource:accessory_pilus_subunit____SSUBM407_1955 } UNION { ?u property:encoded_by resource:hypothetical_protein____BT9727_2393 } } . ?u rdf:type ontology:nutrient }
[]
nutrient
Q23490224 Q23521941
SYSTEM
accessory pilus subunit    SSUBM407_1955, hypothetical protein    BT9727_2393
Q23490224 Q23521941
OR((c(Q181394),P702,Q23216694), (c(Q181394),P702,Q23384900))
action filter_type
action union
action find_reverse
entity Q23216694
relation P702
action find_reverse
entity Q23384900
relation P702
type Q181394
[ANSWERS]
{'OR': [[{'concept': 'Q181394'}, 'P702', 'Q23216694'], [{'concept': 'Q181394'}, 'P702', 'Q23384900']]}
SELECT DISTINCT ?u WHERE { { { ?u property:P702 resource:Q23216694 } UNION { ?u property:P702 resource:Q23384900 } } . ?u rdf:type ontology:Q181394 }
accessory pilus subunit    SSUBM407_1955 hypothetical protein    BT9727_2393
Accessory pilus subunit SSUBM407 1955 and hypothetical protein BT9727 2393 accessory pilus subunit SSUBM407_1955 or hypothetical protein BT9727_2393 encode
accessory pilus subunit    SSUBM407_1955 hypothetical protein    BT9727_2393
action filter_type
action union
action find_reverse
entity accessory pilus subunit    SSUBM407_1955
relation encoded by
action find_reverse
entity hypothetical protein    BT9727_2393
relation encoded by
type nutrient
{'OR': [[{'concept': 'nutrient'}, 'encoded by', 'accessory pilus subunit    SSUBM407_1955'], [{'concept': 'nutrient'}, 'encoded by', 'hypothetical protein    BT9727_2393']]}
SELECT DISTINCT ?u WHERE { { { ?u property:encoded_by resource:accessory_pilus_subunit____SSUBM407_1955 } UNION { ?u property:encoded_by resource:hypothetical_protein____BT9727_2393 } } . ?u rdf:type ontology:nutrient }
[]
Simple Question (Direct)
Simple Question|Mult. Entity|Indirect
Q23490224 Q23521941
P702
Q863908
USER
What encodes accessory pilus subunit    SSUBM407_1955 and hypothetical protein    BT9727_2393 ?
(Q23490224,P702,c(Q863908)) (Q23521941,P702,c(Q863908))
action union
action filter_type
action find
entity Q23490224
relation P702
type Q863908
action filter_type
action find
entity Q23521941
relation P702
type Q863908
['Q23490224', 'P702', {'concept': 'Q863908'}] ['Q23521941', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?e WHERE { { resource:Q23490224 property:P702 ?e . ?e rdf:type ontology:Q863908 } UNION { resource:Q23521941 property:P702 ?e . ?e rdf:type ontology:Q863908 } }
accessory pilus subunit    SSUBM407_1955 hypothetical protein    BT9727_2393
action union
action filter_type
action find
entity accessory pilus subunit    SSUBM407_1955
relation encoded by
type nucleic acid sequence
action filter_type
action find
entity hypothetical protein    BT9727_2393
relation encoded by
type nucleic acid sequence
['accessory pilus subunit    SSUBM407_1955', 'encoded by', {'concept': 'nucleic acid sequence'}] ['hypothetical protein    BT9727_2393', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?e WHERE { { resource:accessory_pilus_subunit____SSUBM407_1955 property:encoded_by ?e . ?e rdf:type ontology:nucleic_acid_sequence } UNION { resource:hypothetical_protein____BT9727_2393 property:encoded_by ?e . ?e rdf:type ontology:nucleic_acid_sequence } }
[]
nucleic acid sequence
Q23216694 Q23384900
SYSTEM
accessory pilus subunit    SSUBM407_1955, hypothetical protein    BT9727_2393
Q23216694 Q23384900
(Q23490224,P702,c(Q863908)) (Q23521941,P702,c(Q863908))
action union
action filter_type
action find
entity Q23490224
relation P702
type Q863908
action filter_type
action find
entity Q23521941
relation P702
type Q863908
[ANSWERS]
['Q23490224', 'P702', {'concept': 'Q863908'}] ['Q23521941', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?e WHERE { { resource:Q23490224 property:P702 ?e . ?e rdf:type ontology:Q863908 } UNION { resource:Q23521941 property:P702 ?e . ?e rdf:type ontology:Q863908 } }
accessory pilus subunit    SSUBM407_1955 hypothetical protein    BT9727_2393
Accessory pilus subunit SSUBM407 1955 and hypothetical protein BT9727 2393 encode accessory pilus subunit SSUBM407_1955 and hypothetical protein BT9727_2393
accessory pilus subunit    SSUBM407_1955 hypothetical protein    BT9727_2393
action union
action filter_type
action find
entity accessory pilus subunit    SSUBM407_1955
relation encoded by
type nucleic acid sequence
action filter_type
action find
entity hypothetical protein    BT9727_2393
relation encoded by
type nucleic acid sequence
['accessory pilus subunit    SSUBM407_1955', 'encoded by', {'concept': 'nucleic acid sequence'}] ['hypothetical protein    BT9727_2393', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?e WHERE { { resource:accessory_pilus_subunit____SSUBM407_1955 property:encoded_by ?e . ?e rdf:type ontology:nucleic_acid_sequence } UNION { resource:hypothetical_protein____BT9727_2393 property:encoded_by ?e . ?e rdf:type ontology:nucleic_acid_sequence } }
[]