Simple Question (Direct)
Simple Question
Q27548063
P703
Q631147
USER
Which taxon is NAD-dependent histone deacetylase HST4 YDR191W a part of ?
(Q27548063,P703,c(Q631147))
action filter_type
action find
entity Q27548063
relation P703
type Q631147
['Q27548063', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:Q631147 . resource:Q27548063 property:P703 ?u }
NAD-dependent histone deacetylase HST4 YDR191W
action filter_type
action find
entity NAD-dependent histone deacetylase HST4 YDR191W
relation found in taxon
type infraspecific name
['NAD-dependent histone deacetylase HST4 YDR191W', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:infraspecific_name . resource:NAD-dependent_histone_deacetylase_HST4_YDR191W property:found_in_taxon ?u }
[]
infraspecific name
Q27510868
SYSTEM
Saccharomyces cerevisiae S288c
Q27510868
(Q27548063,P703,c(Q631147))
action filter_type
action find
entity Q27548063
relation P703
type Q631147
E [ANSWER] is NAD-dependent histone deacetylase HST4 YDR191W a part of
['Q27548063', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:Q631147 . resource:Q27548063 property:P703 ?u }
Saccharomyces cerevisiae S288c
E Saccharomyces cerevisiae S288c is NAD-dependent histone deacetylase HST4 YDR191W a part of
Saccharomyces cerevisiae S288c
action filter_type
action find
entity NAD-dependent histone deacetylase HST4 YDR191W
relation found in taxon
type infraspecific name
['NAD-dependent histone deacetylase HST4 YDR191W', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:infraspecific_name . resource:NAD-dependent_histone_deacetylase_HST4_YDR191W property:found_in_taxon ?u }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q27548063
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(c(Q863908),P688,Q27510868)
action filter_type
action find_reverse
entity Q27548063
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q27510868']
SELECT DISTINCT ?q WHERE { ?q property:P688 resource:Q27548063 . ?q rdf:type ontology:Q863908 }
NAD-dependent histone deacetylase HST4 YDR191W
action filter_type
action find_reverse
entity NAD-dependent histone deacetylase HST4 YDR191W
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Saccharomyces cerevisiae S288c']
SELECT DISTINCT ?q WHERE { ?q property:encodes resource:NAD-dependent_histone_deacetylase_HST4_YDR191W . ?q rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q27540909
SYSTEM
NAD-dependent histone deacetylase HST4 YDR191W
Q27540909
(c(Q863908),P688,Q27510868)
action filter_type
action find_reverse
entity Q27548063
relation P688
type Q863908
The [ANSWER] encodes that nutrient
[{'concept': 'Q863908'}, 'P688', 'Q27510868']
SELECT DISTINCT ?q WHERE { ?q property:P688 resource:Q27548063 . ?q rdf:type ontology:Q863908 }
NAD-dependent histone deacetylase HST4 YDR191W
The NAD-dependent histone deacetylase HST4 YDR191W encodes that nutrient
NAD-dependent histone deacetylase HST4 YDR191W
action filter_type
action find_reverse
entity NAD-dependent histone deacetylase HST4 YDR191W
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Saccharomyces cerevisiae S288c']
SELECT DISTINCT ?q WHERE { ?q property:encodes resource:NAD-dependent_histone_deacetylase_HST4_YDR191W . ?q rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, subject is indirect
Q27540909 Q27548063
P688
Q181394
USER
Is NAD-dependent histone deacetylase HST4 YDR191W encoded by that nucleic acid sequence ?
(Q27540909,P688,Q27548063)
action is_in
entity Q27548063
action find
entity Q27540909
relation P688
['Q27540909', 'P688', 'Q27548063']
ASK WHERE { resource:Q27540909 property:P688 resource:Q27548063 }
NAD-dependent histone deacetylase HST4 YDR191W NAD-dependent histone deacetylase HST4 YDR191W
action is_in
entity NAD-dependent histone deacetylase HST4 YDR191W
action find
entity NAD-dependent histone deacetylase HST4 YDR191W
relation encodes
['NAD-dependent histone deacetylase HST4 YDR191W', 'encodes', 'NAD-dependent histone deacetylase HST4 YDR191W']
ASK WHERE { resource:NAD-dependent_histone_deacetylase_HST4_YDR191W property:encodes resource:NAD-dependent_histone_deacetylase_HST4_YDR191W }
[]
nutrient
SYSTEM
YES
(Q27540909,P688,Q27548063)
action is_in
entity Q27548063
action find
entity Q27540909
relation P688
[ANSWER]
['Q27540909', 'P688', 'Q27548063']
ASK WHERE { resource:Q27540909 property:P688 resource:Q27548063 }
Yes
action is_in
entity NAD-dependent histone deacetylase HST4 YDR191W
action find
entity NAD-dependent histone deacetylase HST4 YDR191W
relation encodes
['NAD-dependent histone deacetylase HST4 YDR191W', 'encodes', 'NAD-dependent histone deacetylase HST4 YDR191W']
ASK WHERE { resource:NAD-dependent_histone_deacetylase_HST4_YDR191W property:encodes resource:NAD-dependent_histone_deacetylase_HST4_YDR191W }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q27548063
P680
Q44424
USER
Which the chemical bond that represents the molecular function of NAD-dependent histone deacetylase HST4 YDR191W ?
(Q27548063,P680,c(Q44424))
action filter_type
action find
entity Q27548063
relation P680
type Q44424
['Q27548063', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?n WHERE { resource:Q27548063 property:P680 ?n . ?n rdf:type ontology:Q44424 }
NAD-dependent histone deacetylase HST4 YDR191W
action filter_type
action find
entity NAD-dependent histone deacetylase HST4 YDR191W
relation molecular function
type chemical bond
['NAD-dependent histone deacetylase HST4 YDR191W', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?n WHERE { resource:NAD-dependent_histone_deacetylase_HST4_YDR191W property:molecular_function ?n . ?n rdf:type ontology:chemical_bond }
[]
chemical bond
Q13667380
SYSTEM
metal ion binding
Q13667380
(Q27548063,P680,c(Q44424))
action filter_type
action find
entity Q27548063
relation P680
type Q44424
Represents of [ANSWER]
['Q27548063', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?n WHERE { resource:Q27548063 property:P680 ?n . ?n rdf:type ontology:Q44424 }
metal ion binding
Represents of metal ion binding
metal ion binding
action filter_type
action find
entity NAD-dependent histone deacetylase HST4 YDR191W
relation molecular function
type chemical bond
['NAD-dependent histone deacetylase HST4 YDR191W', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?n WHERE { resource:NAD-dependent_histone_deacetylase_HST4_YDR191W property:molecular_function ?n . ?n rdf:type ontology:chemical_bond }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q181394 Q181394 Q79529
USER
How many nutrients do approximately 24 nutrients and chemical substances collaborate with ?
(c(Q181394)|c(Q79529),P129,c(Q181394))
action count
action approx
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
value 24
[[{'concept': 'Q181394'}, {'concept': 'Q79529'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?k ) AS ?d ) WHERE { { SELECT DISTINCT ( COUNT ( ?u ) AS ?b ) ?k WHERE { { ?u property:P129 ?k . ?u rdf:type ontology:Q181394 . ?k rdf:type ontology:Q181394 } UNION { ?u property:P129 ?k . ?u rdf:type ontology:Q79529 . ?k rdf:type ontology:Q181394 } } GROUP BY ?k } . FILTER ( ?b = 24 ) }
action count
action approx
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
value 24
[[{'concept': 'nutrient'}, {'concept': 'chemical substance'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?k ) AS ?d ) WHERE { { SELECT DISTINCT ( COUNT ( ?u ) AS ?b ) ?k WHERE { { ?u property:physically_interacts_with ?k . ?u rdf:type ontology:nutrient . ?k rdf:type ontology:nutrient } UNION { ?u property:physically_interacts_with ?k . ?u rdf:type ontology:chemical_substance . ?k rdf:type ontology:nutrient } } GROUP BY ?k } . FILTER ( ?b = 24 ) }
[]
nutrient nutrient chemical substance
SYSTEM
3
Q288797 Q21115051 Q21109363
(c(Q181394)|c(Q79529),P129,c(Q181394))
action count
action approx
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
value 24
[ANSWER]
[[{'concept': 'Q181394'}, {'concept': 'Q79529'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?k ) AS ?d ) WHERE { { SELECT DISTINCT ( COUNT ( ?u ) AS ?b ) ?k WHERE { { ?u property:P129 ?k . ?u rdf:type ontology:Q181394 . ?k rdf:type ontology:Q181394 } UNION { ?u property:P129 ?k . ?u rdf:type ontology:Q79529 . ?k rdf:type ontology:Q181394 } } GROUP BY ?k } . FILTER ( ?b = 24 ) }
5-hydroxytryptamine receptor 1B 5-hydroxytryptamine receptor 1E 5-hydroxytryptamine receptor 6
3
action count
action approx
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
value 24
[[{'concept': 'nutrient'}, {'concept': 'chemical substance'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?k ) AS ?d ) WHERE { { SELECT DISTINCT ( COUNT ( ?u ) AS ?b ) ?k WHERE { { ?u property:physically_interacts_with ?k . ?u rdf:type ontology:nutrient . ?k rdf:type ontology:nutrient } UNION { ?u property:physically_interacts_with ?k . ?u rdf:type ontology:chemical_substance . ?k rdf:type ontology:nutrient } } GROUP BY ?k } . FILTER ( ?b = 24 ) }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Mult. entity type
Q27548063 Q183011
P688
Q863908
USER
How many nucleic acid sequences encodes NAD-dependent histone deacetylase HST4 YDR191W or vasopressin ?
(c(Q863908),P688,Q27548063) (c(Q863908),P688,Q183011)
action count
action union
action filter_type
action find_reverse
entity Q27548063
relation P688
type Q863908
action filter_type
action find_reverse
entity Q183011
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q27548063'] [{'concept': 'Q863908'}, 'P688', 'Q183011']
SELECT DISTINCT ( COUNT ( ?g ) AS ?e ) WHERE { { ?g property:P688 resource:Q27548063 . ?g rdf:type ontology:Q863908 } UNION { ?g property:P688 resource:Q183011 . ?g rdf:type ontology:Q863908 } }
NAD-dependent histone deacetylase HST4 YDR191W vasopressin
action count
action union
action filter_type
action find_reverse
entity NAD-dependent histone deacetylase HST4 YDR191W
relation encodes
type nucleic acid sequence
action filter_type
action find_reverse
entity vasopressin
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'NAD-dependent histone deacetylase HST4 YDR191W'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'vasopressin']
SELECT DISTINCT ( COUNT ( ?g ) AS ?e ) WHERE { { ?g property:encodes resource:NAD-dependent_histone_deacetylase_HST4_YDR191W . ?g rdf:type ontology:nucleic_acid_sequence } UNION { ?g property:encodes resource:vasopressin . ?g rdf:type ontology:nucleic_acid_sequence } }
[]
nucleic acid sequence
SYSTEM
2
Q14820686 Q27540909
(c(Q863908),P688,Q27548063) (c(Q863908),P688,Q183011)
action count
action union
action filter_type
action find_reverse
entity Q27548063
relation P688
type Q863908
action filter_type
action find_reverse
entity Q183011
relation P688
type Q863908
[ANSWER]
[{'concept': 'Q863908'}, 'P688', 'Q27548063'] [{'concept': 'Q863908'}, 'P688', 'Q183011']
SELECT DISTINCT ( COUNT ( ?g ) AS ?e ) WHERE { { ?g property:P688 resource:Q27548063 . ?g rdf:type ontology:Q863908 } UNION { ?g property:P688 resource:Q183011 . ?g rdf:type ontology:Q863908 } }
AVP NAD-dependent histone deacetylase HST4 YDR191W
2
action count
action union
action filter_type
action find_reverse
entity NAD-dependent histone deacetylase HST4 YDR191W
relation encodes
type nucleic acid sequence
action filter_type
action find_reverse
entity vasopressin
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'NAD-dependent histone deacetylase HST4 YDR191W'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'vasopressin']
SELECT DISTINCT ( COUNT ( ?g ) AS ?e ) WHERE { { ?g property:encodes resource:NAD-dependent_histone_deacetylase_HST4_YDR191W . ?g rdf:type ontology:nucleic_acid_sequence } UNION { ?g property:encodes resource:vasopressin . ?g rdf:type ontology:nucleic_acid_sequence } }
[]
Logical Reasoning (All)
Logical|Intersection|Single_Relation
Q23489496 Q27548063
P681
Q15989253
USER
Which parts are the components of NAD-dependent histone deacetylase HST4 YDR191W and recombination regulator RecX    SSUBM407_0385 ?
AND((Q27548063,P681,c(Q15989253)), (Q23489496,P681,c(Q15989253)))
action filter_type
action intersection
action find
entity Q27548063
relation P681
action find
entity Q23489496
relation P681
type Q15989253
{'AND': [['Q27548063', 'P681', {'concept': 'Q15989253'}], ['Q23489496', 'P681', {'concept': 'Q15989253'}]]}
SELECT DISTINCT ?b WHERE { resource:Q23489496 property:P681 ?b . resource:Q27548063 property:P681 ?b . ?b rdf:type ontology:Q15989253 }
recombination regulator RecX    SSUBM407_0385 NAD-dependent histone deacetylase HST4 YDR191W
action filter_type
action intersection
action find
entity NAD-dependent histone deacetylase HST4 YDR191W
relation cell component
action find
entity recombination regulator RecX    SSUBM407_0385
relation cell component
type part
{'AND': [['NAD-dependent histone deacetylase HST4 YDR191W', 'cell component', {'concept': 'part'}], ['recombination regulator RecX    SSUBM407_0385', 'cell component', {'concept': 'part'}]]}
SELECT DISTINCT ?b WHERE { resource:recombination_regulator_RecX____SSUBM407_0385 property:cell_component ?b . resource:NAD-dependent_histone_deacetylase_HST4_YDR191W property:cell_component ?b . ?b rdf:type ontology:part }
[]
part
Q79899
SYSTEM
cytoplasm
Q79899
AND((Q27548063,P681,c(Q15989253)), (Q23489496,P681,c(Q15989253)))
action filter_type
action intersection
action find
entity Q27548063
relation P681
action find
entity Q23489496
relation P681
type Q15989253
[ANSWER] is the components of NAD-dependent histone deacetylase HST4 YDR191W and recombination regulator RecX SSUBM407_0385
{'AND': [['Q27548063', 'P681', {'concept': 'Q15989253'}], ['Q23489496', 'P681', {'concept': 'Q15989253'}]]}
SELECT DISTINCT ?b WHERE { resource:Q23489496 property:P681 ?b . resource:Q27548063 property:P681 ?b . ?b rdf:type ontology:Q15989253 }
cytoplasm
Cytoplasm is the components of NAD-dependent histone deacetylase HST4 YDR191W and recombination regulator RecX SSUBM407_0385
cytoplasm
action filter_type
action intersection
action find
entity NAD-dependent histone deacetylase HST4 YDR191W
relation cell component
action find
entity recombination regulator RecX    SSUBM407_0385
relation cell component
type part
{'AND': [['NAD-dependent histone deacetylase HST4 YDR191W', 'cell component', {'concept': 'part'}], ['recombination regulator RecX    SSUBM407_0385', 'cell component', {'concept': 'part'}]]}
SELECT DISTINCT ?b WHERE { resource:recombination_regulator_RecX____SSUBM407_0385 property:cell_component ?b . resource:NAD-dependent_histone_deacetylase_HST4_YDR191W property:cell_component ?b . ?b rdf:type ontology:part }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type
Q23489496
P688
Q863908
USER
How many nucleic acid sequences encode recombination regulator RecX    SSUBM407_0385 ?
(c(Q863908),P688,Q23489496)
action count
action filter_type
action find_reverse
entity Q23489496
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q23489496']
SELECT DISTINCT ( COUNT ( ?s ) AS ?l ) WHERE { ?s property:P688 resource:Q23489496 . ?s rdf:type ontology:Q863908 }
recombination regulator RecX    SSUBM407_0385
action count
action filter_type
action find_reverse
entity recombination regulator RecX    SSUBM407_0385
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'recombination regulator RecX    SSUBM407_0385']
SELECT DISTINCT ( COUNT ( ?s ) AS ?l ) WHERE { ?s property:encodes resource:recombination_regulator_RecX____SSUBM407_0385 . ?s rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
SYSTEM
1
Q23215924
(c(Q863908),P688,Q23489496)
action count
action filter_type
action find_reverse
entity Q23489496
relation P688
type Q863908
[ANSWER]
[{'concept': 'Q863908'}, 'P688', 'Q23489496']
SELECT DISTINCT ( COUNT ( ?s ) AS ?l ) WHERE { ?s property:P688 resource:Q23489496 . ?s rdf:type ontology:Q863908 }
recombination regulator RecX    SSUBM407_0385
1
action count
action filter_type
action find_reverse
entity recombination regulator RecX    SSUBM407_0385
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'recombination regulator RecX    SSUBM407_0385']
SELECT DISTINCT ( COUNT ( ?s ) AS ?l ) WHERE { ?s property:encodes resource:recombination_regulator_RecX____SSUBM407_0385 . ?s rdf:type ontology:nucleic_acid_sequence }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type|Incomplete
Q23421082
P688
Q863908
USER
And what about nickel ABC transporter permease NikC    SF3496?
(c(Q863908),P688,Q23421082)
action count
action filter_type
action find_reverse
entity Q23421082
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q23421082']
SELECT DISTINCT ( COUNT ( ?k ) AS ?b ) WHERE { ?k property:P688 resource:Q23421082 . ?k rdf:type ontology:Q863908 }
nickel ABC transporter permease NikC    SF3496
action count
action filter_type
action find_reverse
entity nickel ABC transporter permease NikC    SF3496
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'nickel ABC transporter permease NikC    SF3496']
SELECT DISTINCT ( COUNT ( ?k ) AS ?b ) WHERE { ?k property:encodes resource:nickel_ABC_transporter_permease_NikC____SF3496 . ?k rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
SYSTEM
1
Q23094140
(c(Q863908),P688,Q23421082)
action count
action filter_type
action find_reverse
entity Q23421082
relation P688
type Q863908
[ANSWER]
[{'concept': 'Q863908'}, 'P688', 'Q23421082']
SELECT DISTINCT ( COUNT ( ?k ) AS ?b ) WHERE { ?k property:P688 resource:Q23421082 . ?k rdf:type ontology:Q863908 }
nickel ABC transporter permease NikC    SF3496
1
action count
action filter_type
action find_reverse
entity nickel ABC transporter permease NikC    SF3496
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'nickel ABC transporter permease NikC    SF3496']
SELECT DISTINCT ( COUNT ( ?k ) AS ?b ) WHERE { ?k property:encodes resource:nickel_ABC_transporter_permease_NikC____SF3496 . ?k rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23421082
P702
Q863908
USER
What encodes that nutrient ?
action filter_type
action find
entity Q23421082
relation P702
type Q863908
SELECT DISTINCT ?f WHERE { resource:Q23421082 property:P702 ?f . ?f rdf:type ontology:Q863908 }
nickel ABC transporter permease NikC    SF3496
action filter_type
action find
entity nickel ABC transporter permease NikC    SF3496
relation encoded by
type nucleic acid sequence
SELECT DISTINCT ?f WHERE { resource:nickel_ABC_transporter_permease_NikC____SF3496 property:encoded_by ?f . ?f rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23094140
SYSTEM
nickel ABC transporter permease NikC    SF3496
Q23094140
action filter_type
action find
entity Q23421082
relation P702
type Q863908
Nickel ABC transporter permease NikC SF3496 encodes that nutrient
SELECT DISTINCT ?f WHERE { resource:Q23421082 property:P702 ?f . ?f rdf:type ontology:Q863908 }
nickel ABC transporter permease NikC    SF3496
Nickel ABC transporter permease NikC SF3496 encodes that nutrient
nickel ABC transporter permease NikC    SF3496
action filter_type
action find
entity nickel ABC transporter permease NikC    SF3496
relation encoded by
type nucleic acid sequence
SELECT DISTINCT ?f WHERE { resource:nickel_ABC_transporter_permease_NikC____SF3496 property:encoded_by ?f . ?f rdf:type ontology:nucleic_acid_sequence }
[]