Simple Question (Direct)
Simple Question
Q21107502
P681
Q15989253
USER
What is a component of Fascin-3 ?
(Q21107502,P681,c(Q15989253))
action filter_type
action find
entity Q21107502
relation P681
type Q15989253
['Q21107502', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?v WHERE { resource:Q21107502 property:P681 ?v . ?v rdf:type ontology:Q15989253 }
Fascin-3
action filter_type
action find
entity Fascin-3
relation cell component
type part
['Fascin-3', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?v WHERE { resource:Fascin-3 property:cell_component ?v . ?v rdf:type ontology:part }
[]
part
Q79899
SYSTEM
cytoplasm
Q79899
(Q21107502,P681,c(Q15989253))
action filter_type
action find
entity Q21107502
relation P681
type Q15989253
A component of Fascin-3 is the [ANSWER]
['Q21107502', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?v WHERE { resource:Q21107502 property:P681 ?v . ?v rdf:type ontology:Q15989253 }
cytoplasm
A component of Fascin-3 is the cytoplasm
cytoplasm
action filter_type
action find
entity Fascin-3
relation cell component
type part
['Fascin-3', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?v WHERE { resource:Fascin-3 property:cell_component ?v . ?v rdf:type ontology:part }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21107502
P688
Q863908
USER
What is the nucleic acid sequence that is encoded by Fascin-3 ?
(c(Q863908),P688,Q21107502)
action filter_type
action find_reverse
entity Q21107502
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q21107502']
SELECT DISTINCT ?g WHERE { ?g property:P688 resource:Q21107502 . ?g rdf:type ontology:Q863908 }
Fascin-3
action filter_type
action find_reverse
entity Fascin-3
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Fascin-3']
SELECT DISTINCT ?g WHERE { ?g property:encodes resource:Fascin-3 . ?g rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18039761
SYSTEM
FSCN3
Q18039761
(c(Q863908),P688,Q21107502)
action filter_type
action find_reverse
entity Q21107502
relation P688
type Q863908
The nucleic acid sequence that is encoded by Fascin-3 is the [ANSWER]
[{'concept': 'Q863908'}, 'P688', 'Q21107502']
SELECT DISTINCT ?g WHERE { ?g property:P688 resource:Q21107502 . ?g rdf:type ontology:Q863908 }
FSCN3
The nucleic acid sequence that is encoded by Fascin-3 is the FSCN3
FSCN3
action filter_type
action find_reverse
entity Fascin-3
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Fascin-3']
SELECT DISTINCT ?g WHERE { ?g property:encodes resource:Fascin-3 . ?g rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18039761
P684
Q863908
USER
What is the name of the species that has that one as its orthologous gene ?
(c(Q863908),P684,Q18039761)
action filter_type
action find
entity Q18039761
relation P684
type Q863908
[{'concept': 'Q863908'}, 'P684', 'Q18039761']
SELECT DISTINCT ?w WHERE { resource:Q18039761 property:P684 ?w . ?w rdf:type ontology:Q863908 }
FSCN3
action filter_type
action find
entity FSCN3
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'FSCN3']
SELECT DISTINCT ?w WHERE { resource:FSCN3 property:ortholog ?w . ?w rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18258334
SYSTEM
Fscn3
Q18258334
(c(Q863908),P684,Q18039761)
action filter_type
action find
entity Q18039761
relation P684
type Q863908
The name of the species that has that one as its orthologous gene is the [ANSWER]
[{'concept': 'Q863908'}, 'P684', 'Q18039761']
SELECT DISTINCT ?w WHERE { resource:Q18039761 property:P684 ?w . ?w rdf:type ontology:Q863908 }
Fscn3
The name of the species that has that one as its orthologous gene is the Fscn3
Fscn3
action filter_type
action find
entity FSCN3
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'FSCN3']
SELECT DISTINCT ?w WHERE { resource:FSCN3 property:ortholog ?w . ?w rdf:type ontology:nucleic_acid_sequence }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q181394 Q8386 Q79529
USER
How many nutrients do exactly 15 drugs and chemical substances contact with ?
(c(Q8386)|c(Q79529),P129,c(Q181394))
action count
action equal
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
value 15
[[{'concept': 'Q8386'}, {'concept': 'Q79529'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?j ) AS ?b ) WHERE { { SELECT DISTINCT ?j ( COUNT ( ?q ) AS ?l ) WHERE { { ?q property:P129 ?j . ?j rdf:type ontology:Q181394 . ?q rdf:type ontology:Q79529 } UNION { ?q property:P129 ?j . ?j rdf:type ontology:Q181394 . ?q rdf:type ontology:Q8386 } } GROUP BY ?j } . FILTER ( ?l = 15 ) }
action count
action equal
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
value 15
[[{'concept': 'drug'}, {'concept': 'chemical substance'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?j ) AS ?b ) WHERE { { SELECT DISTINCT ?j ( COUNT ( ?q ) AS ?l ) WHERE { { ?q property:physically_interacts_with ?j . ?j rdf:type ontology:nutrient . ?q rdf:type ontology:chemical_substance } UNION { ?q property:physically_interacts_with ?j . ?j rdf:type ontology:nutrient . ?q rdf:type ontology:drug } } GROUP BY ?j } . FILTER ( ?l = 15 ) }
[]
nutrient drug chemical substance
SYSTEM
4
Q2271947 Q21172390 Q5629167 Q21109359
(c(Q8386)|c(Q79529),P129,c(Q181394))
action count
action equal
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
value 15
[ANSWER]
[[{'concept': 'Q8386'}, {'concept': 'Q79529'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?j ) AS ?b ) WHERE { { SELECT DISTINCT ?j ( COUNT ( ?q ) AS ?l ) WHERE { { ?q property:P129 ?j . ?j rdf:type ontology:Q181394 . ?q rdf:type ontology:Q79529 } UNION { ?q property:P129 ?j . ?j rdf:type ontology:Q181394 . ?q rdf:type ontology:Q8386 } } GROUP BY ?j } . FILTER ( ?l = 15 ) }
Sodium-dependent dopamine transporter Vascular endothelial growth factor receptor 2 Histone deacetylase 1 5-hydroxytryptamine receptor 5A
4
action count
action equal
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
value 15
[[{'concept': 'drug'}, {'concept': 'chemical substance'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?j ) AS ?b ) WHERE { { SELECT DISTINCT ?j ( COUNT ( ?q ) AS ?l ) WHERE { { ?q property:physically_interacts_with ?j . ?j rdf:type ontology:nutrient . ?q rdf:type ontology:chemical_substance } UNION { ?q property:physically_interacts_with ?j . ?j rdf:type ontology:nutrient . ?q rdf:type ontology:drug } } GROUP BY ?j } . FILTER ( ?l = 15 ) }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q18258334
P702
Q181394
USER
What is the gene that is encoded by Fscn3 ?
(c(Q181394),P702,Q18258334)
action filter_type
action find_reverse
entity Q18258334
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q18258334']
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:Q181394 . ?m property:P702 resource:Q18258334 }
Fscn3
action filter_type
action find_reverse
entity Fscn3
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'Fscn3']
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:nutrient . ?m property:encoded_by resource:Fscn3 }
[]
nutrient
Q21498498
SYSTEM
Fascin-3
Q21498498
(c(Q181394),P702,Q18258334)
action filter_type
action find_reverse
entity Q18258334
relation P702
type Q181394
The gene that is encoded by Fscn3 is also [ANSWER]
[{'concept': 'Q181394'}, 'P702', 'Q18258334']
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:Q181394 . ?m property:P702 resource:Q18258334 }
Fascin-3
The gene that is encoded by Fscn3 is also Fascin-3
Fascin-3
action filter_type
action find_reverse
entity Fscn3
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'Fscn3']
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:nutrient . ?m property:encoded_by resource:Fscn3 }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q22265503 Q21498498
P702
Q863908
USER
Which nucleic acid sequences genes encode Fascin-3 or ABC transporter ATP-binding protein    NGO1399 ?
OR((Q21498498,P702,c(Q863908)), (Q22265503,P702,c(Q863908)))
action filter_type
action union
action find
entity Q21498498
relation P702
action find
entity Q22265503
relation P702
type Q863908
{'OR': [['Q21498498', 'P702', {'concept': 'Q863908'}], ['Q22265503', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?j WHERE { { { resource:Q21498498 property:P702 ?j } UNION { resource:Q22265503 property:P702 ?j } } . ?j rdf:type ontology:Q863908 }
ABC transporter ATP-binding protein    NGO1399 Fascin-3
action filter_type
action union
action find
entity Fascin-3
relation encoded by
action find
entity ABC transporter ATP-binding protein    NGO1399
relation encoded by
type nucleic acid sequence
{'OR': [['Fascin-3', 'encoded by', {'concept': 'nucleic acid sequence'}], ['ABC transporter ATP-binding protein    NGO1399', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?j WHERE { { { resource:Fascin-3 property:encoded_by ?j } UNION { resource:ABC_transporter_ATP-binding_protein____NGO1399 property:encoded_by ?j } } . ?j rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q22263608 Q18258334
SYSTEM
ABC transporter ATP-binding protein    NGO1399, Fscn3
Q22263608 Q18258334
OR((Q21498498,P702,c(Q863908)), (Q22265503,P702,c(Q863908)))
action filter_type
action union
action find
entity Q21498498
relation P702
action find
entity Q22265503
relation P702
type Q863908
[ANSWERS]
{'OR': [['Q21498498', 'P702', {'concept': 'Q863908'}], ['Q22265503', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?j WHERE { { { resource:Q21498498 property:P702 ?j } UNION { resource:Q22265503 property:P702 ?j } } . ?j rdf:type ontology:Q863908 }
ABC transporter ATP-binding protein    NGO1399 Fscn3
ABC transporter ATP-binding protein NGO1399 and Fscn3 encode Fascin-3 or ABC transporter ATP-binding protein NGO1399
ABC transporter ATP-binding protein    NGO1399 Fscn3
action filter_type
action union
action find
entity Fascin-3
relation encoded by
action find
entity ABC transporter ATP-binding protein    NGO1399
relation encoded by
type nucleic acid sequence
{'OR': [['Fascin-3', 'encoded by', {'concept': 'nucleic acid sequence'}], ['ABC transporter ATP-binding protein    NGO1399', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?j WHERE { { { resource:Fascin-3 property:encoded_by ?j } UNION { resource:ABC_transporter_ATP-binding_protein____NGO1399 property:encoded_by ?j } } . ?j rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q18258334
P703
Q16521
USER
Where is Fscn3 found ?
(Q18258334,P703,c(Q16521))
action filter_type
action find
entity Q18258334
relation P703
type Q16521
['Q18258334', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?q WHERE { resource:Q18258334 property:P703 ?q . ?q rdf:type ontology:Q16521 }
Fscn3
action filter_type
action find
entity Fscn3
relation found in taxon
type taxon
['Fscn3', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?q WHERE { resource:Fscn3 property:found_in_taxon ?q . ?q rdf:type ontology:taxon }
[]
taxon
Q83310
SYSTEM
Mus musculus
Q83310
(Q18258334,P703,c(Q16521))
action filter_type
action find
entity Q18258334
relation P703
type Q16521
Fscn3 is found in [ANSWER]
['Q18258334', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?q WHERE { resource:Q18258334 property:P703 ?q . ?q rdf:type ontology:Q16521 }
Mus musculus
Fscn3 is found in Mus musculus
Mus musculus
action filter_type
action find
entity Fscn3
relation found in taxon
type taxon
['Fscn3', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?q WHERE { resource:Fscn3 property:found_in_taxon ?q . ?q rdf:type ontology:taxon }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23113032 Q18258334
P688
Q181394
USER
Which nutrients are encoded by Fscn3 or formate hydrogenlyase subunit B    O3K_05940 ?
OR((Q18258334,P688,c(Q181394)), (Q23113032,P688,c(Q181394)))
action filter_type
action union
action find
entity Q18258334
relation P688
action find
entity Q23113032
relation P688
type Q181394
{'OR': [['Q18258334', 'P688', {'concept': 'Q181394'}], ['Q23113032', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?t WHERE { { { resource:Q18258334 property:P688 ?t } UNION { resource:Q23113032 property:P688 ?t } } . ?t rdf:type ontology:Q181394 }
formate hydrogenlyase subunit B    O3K_05940 Fscn3
action filter_type
action union
action find
entity Fscn3
relation encodes
action find
entity formate hydrogenlyase subunit B    O3K_05940
relation encodes
type nutrient
{'OR': [['Fscn3', 'encodes', {'concept': 'nutrient'}], ['formate hydrogenlyase subunit B    O3K_05940', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?t WHERE { { { resource:Fscn3 property:encodes ?t } UNION { resource:formate_hydrogenlyase_subunit_B____O3K_05940 property:encodes ?t } } . ?t rdf:type ontology:nutrient }
[]
nutrient
Q21498498 Q24279822
SYSTEM
Fascin-3, formate hydrogenlyase subunit B    O3K_05940
Q21498498 Q24279822
OR((Q18258334,P688,c(Q181394)), (Q23113032,P688,c(Q181394)))
action filter_type
action union
action find
entity Q18258334
relation P688
action find
entity Q23113032
relation P688
type Q181394
[ANSWERS]
{'OR': [['Q18258334', 'P688', {'concept': 'Q181394'}], ['Q23113032', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?t WHERE { { { resource:Q18258334 property:P688 ?t } UNION { resource:Q23113032 property:P688 ?t } } . ?t rdf:type ontology:Q181394 }
Fascin-3 formate hydrogenlyase subunit B    O3K_05940
Fascin-3 and formate hydrogenlyase subunit B O3K 05940 are encoded by Fscn3 or formate hydrogenlyase subunit B O3K_05940
Fascin-3 formate hydrogenlyase subunit B    O3K_05940
action filter_type
action union
action find
entity Fscn3
relation encodes
action find
entity formate hydrogenlyase subunit B    O3K_05940
relation encodes
type nutrient
{'OR': [['Fscn3', 'encodes', {'concept': 'nutrient'}], ['formate hydrogenlyase subunit B    O3K_05940', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?t WHERE { { { resource:Fscn3 property:encodes ?t } UNION { resource:formate_hydrogenlyase_subunit_B____O3K_05940 property:encodes ?t } } . ?t rdf:type ontology:nutrient }
[]
Clarification
Quantitative|Count|Single entity type|Indirect
P688
Q863908
USER
How many nucleic acid sequences encodes that nutrient ?
(c(Q863908),P688,Q21498498)
[{'concept': 'Q863908'}, 'P688', 'Q21498498']
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { ?z property:P688 resource:Q21107502 . ?z rdf:type ontology:Q863908 }
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Fascin-3']
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { ?z property:encodes resource:Fascin-3 . ?z rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Quantitative|Count|Single entity type|Clarification
Q21498498
SYSTEM
Did you mean Fascin-3 ?
(c(Q863908),P688,Q21498498) (c(Q863908),P688,Q24279822)
[ANSWER]
[{'concept': 'Q863908'}, 'P688', 'Q21498498'] [{'concept': 'Q863908'}, 'P688', 'Q24279822']
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { ?z property:P688 resource:Q21107502 . ?z rdf:type ontology:Q863908 }
Did you mean Fascin-3 ?
Fascin-3
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Fascin-3'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'formate hydrogenlyase subunit B    O3K_05940']
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { ?z property:encodes resource:Fascin-3 . ?z rdf:type ontology:nucleic_acid_sequence }
[]
Quantitative Reasoning (Count) (All)
USER
Yes
(c(Q863908),P688,Q21498498)
[{'concept': 'Q863908'}, 'P688', 'Q21498498']
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Fascin-3']
[]
SYSTEM
1
Q18258334
(c(Q863908),P688,Q21498498)
[ANSWER]
[{'concept': 'Q863908'}, 'P688', 'Q21498498']
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { ?z property:P688 resource:Q21107502 . ?z rdf:type ontology:Q863908 }
Fscn3
1
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Fascin-3']
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { ?z property:encodes resource:Fascin-3 . ?z rdf:type ontology:nucleic_acid_sequence }
[]