Simple Question (Direct)
Simple Question
Q23511984
P680
Q44424
USER
Which the chemical bond that represents the molecular function of pyruvate carboxylase    BC3947 ?
(Q23511984,P680,c(Q44424))
action filter_type
action find
entity Q23511984
relation P680
type Q44424
['Q23511984', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?e WHERE { ?e rdf:type ontology:Q44424 . resource:Q23511984 property:P680 ?e }
pyruvate carboxylase    BC3947
action filter_type
action find
entity pyruvate carboxylase    BC3947
relation molecular function
type chemical bond
['pyruvate carboxylase    BC3947', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?e WHERE { ?e rdf:type ontology:chemical_bond . resource:pyruvate_carboxylase____BC3947 property:molecular_function ?e }
[]
chemical bond
Q13667380
SYSTEM
metal ion binding
Q13667380
(Q23511984,P680,c(Q44424))
action filter_type
action find
entity Q23511984
relation P680
type Q44424
Represents of [ANSWER]
['Q23511984', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?e WHERE { ?e rdf:type ontology:Q44424 . resource:Q23511984 property:P680 ?e }
metal ion binding
Represents of metal ion binding
metal ion binding
action filter_type
action find
entity pyruvate carboxylase    BC3947
relation molecular function
type chemical bond
['pyruvate carboxylase    BC3947', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?e WHERE { ?e rdf:type ontology:chemical_bond . resource:pyruvate_carboxylase____BC3947 property:molecular_function ?e }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23511984
P688
Q863908
USER
What is the nucleic acid sequence that is encoded by pyruvate carboxylase    BC3947 ?
(c(Q863908),P688,Q23511984)
action filter_type
action find_reverse
entity Q23511984
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q23511984']
SELECT DISTINCT ?k WHERE { ?k property:P688 resource:Q23511984 . ?k rdf:type ontology:Q863908 }
pyruvate carboxylase    BC3947
action filter_type
action find_reverse
entity pyruvate carboxylase    BC3947
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'pyruvate carboxylase    BC3947']
SELECT DISTINCT ?k WHERE { ?k property:encodes resource:pyruvate_carboxylase____BC3947 . ?k rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23193555
SYSTEM
pyruvate carboxylase    BC3947
Q23193555
(c(Q863908),P688,Q23511984)
action filter_type
action find_reverse
entity Q23511984
relation P688
type Q863908
The nucleic acid sequence that is encoded by pyruvate carboxylase BC3947 is by pyruvate carboxylase BC3947
[{'concept': 'Q863908'}, 'P688', 'Q23511984']
SELECT DISTINCT ?k WHERE { ?k property:P688 resource:Q23511984 . ?k rdf:type ontology:Q863908 }
pyruvate carboxylase    BC3947
The nucleic acid sequence that is encoded by pyruvate carboxylase BC3947 is by pyruvate carboxylase BC3947
pyruvate carboxylase    BC3947
action filter_type
action find_reverse
entity pyruvate carboxylase    BC3947
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'pyruvate carboxylase    BC3947']
SELECT DISTINCT ?k WHERE { ?k property:encodes resource:pyruvate_carboxylase____BC3947 . ?k rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23511984
P702
Q863908
USER
Which gene encodes that nutrient ?
(Q23193555,P702,c(Q863908))
action filter_type
action find
entity Q23511984
relation P702
type Q863908
['Q23193555', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?e WHERE { resource:Q23511984 property:P702 ?e . ?e rdf:type ontology:Q863908 }
pyruvate carboxylase    BC3947
action filter_type
action find
entity pyruvate carboxylase    BC3947
relation encoded by
type nucleic acid sequence
['pyruvate carboxylase    BC3947', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?e WHERE { resource:pyruvate_carboxylase____BC3947 property:encoded_by ?e . ?e rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23193555
SYSTEM
pyruvate carboxylase    BC3947
Q23193555
(Q23193555,P702,c(Q863908))
action filter_type
action find
entity Q23511984
relation P702
type Q863908
Pyruvate carboxylase BC3947 encodes that nutrient
['Q23193555', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?e WHERE { resource:Q23511984 property:P702 ?e . ?e rdf:type ontology:Q863908 }
pyruvate carboxylase    BC3947
Pyruvate carboxylase BC3947 encodes that nutrient
pyruvate carboxylase    BC3947
action filter_type
action find
entity pyruvate carboxylase    BC3947
relation encoded by
type nucleic acid sequence
['pyruvate carboxylase    BC3947', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?e WHERE { resource:pyruvate_carboxylase____BC3947 property:encoded_by ?e . ?e rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q23193555 Q24223459
P702
Q181394
USER
Does that nucleic acid sequence encode transcriptional regulator    bll2260 ?
(Q24223459,P702,Q23193555)
action is_in
entity Q24223459
action find
entity Q23193555
relation P702
['Q24223459', 'P702', 'Q23193555']
ASK WHERE { resource:Q23193555 property:P702 resource:Q24223459 }
pyruvate carboxylase    BC3947 transcriptional regulator    bll2260
action is_in
entity transcriptional regulator    bll2260
action find
entity pyruvate carboxylase    BC3947
relation encoded by
['transcriptional regulator    bll2260', 'encoded by', 'pyruvate carboxylase    BC3947']
ASK WHERE { resource:pyruvate_carboxylase____BC3947 property:encoded_by resource:transcriptional_regulator____bll2260 }
[]
nutrient
SYSTEM
NO
(Q24223459,P702,Q23193555)
action is_in
entity Q24223459
action find
entity Q23193555
relation P702
[ANSWER]
['Q24223459', 'P702', 'Q23193555']
ASK WHERE { resource:Q23193555 property:P702 resource:Q24223459 }
No
action is_in
entity transcriptional regulator    bll2260
action find
entity pyruvate carboxylase    BC3947
relation encoded by
['transcriptional regulator    bll2260', 'encoded by', 'pyruvate carboxylase    BC3947']
ASK WHERE { resource:pyruvate_carboxylase____BC3947 property:encoded_by resource:transcriptional_regulator____bll2260 }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type
Q23193555
P688
Q181394
USER
How many nutrients do pyruvate carboxylase    BC3947 encode ?
(Q23193555,P688,c(Q181394))
action count
action filter_type
action find
entity Q23193555
relation P688
type Q181394
['Q23193555', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?d ) AS ?a ) WHERE { ?d rdf:type ontology:Q181394 . resource:Q23193555 property:P688 ?d }
pyruvate carboxylase    BC3947
action count
action filter_type
action find
entity pyruvate carboxylase    BC3947
relation encodes
type nutrient
['pyruvate carboxylase    BC3947', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?d ) AS ?a ) WHERE { ?d rdf:type ontology:nutrient . resource:pyruvate_carboxylase____BC3947 property:encodes ?d }
[]
nutrient
SYSTEM
1
Q23511984
(Q23193555,P688,c(Q181394))
action count
action filter_type
action find
entity Q23193555
relation P688
type Q181394
[ANSWER]
['Q23193555', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?d ) AS ?a ) WHERE { ?d rdf:type ontology:Q181394 . resource:Q23193555 property:P688 ?d }
pyruvate carboxylase    BC3947
1
action count
action filter_type
action find
entity pyruvate carboxylase    BC3947
relation encodes
type nutrient
['pyruvate carboxylase    BC3947', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?d ) AS ?a ) WHERE { ?d rdf:type ontology:nutrient . resource:pyruvate_carboxylase____BC3947 property:encodes ?d }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type|Incomplete
Q22288067
P688
Q181394
USER
And also tell me about Na+/H+ antiporter    TDE0755?
(Q22288067,P688,c(Q181394))
action count
action filter_type
action find
entity Q22288067
relation P688
type Q181394
['Q22288067', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?d ) AS ?e ) WHERE { resource:Q22288067 property:P688 ?d . ?d rdf:type ontology:Q181394 }
Na+/H+ antiporter    TDE0755
action count
action filter_type
action find
entity Na+/H+ antiporter    TDE0755
relation encodes
type nutrient
['Na+/H+ antiporter    TDE0755', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?d ) AS ?e ) WHERE { resource:Na+/H+_antiporter____TDE0755 property:encodes ?d . ?d rdf:type ontology:nutrient }
[]
nutrient
SYSTEM
1
Q22292048
(Q22288067,P688,c(Q181394))
action count
action filter_type
action find
entity Q22288067
relation P688
type Q181394
[ANSWER]
['Q22288067', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?d ) AS ?e ) WHERE { resource:Q22288067 property:P688 ?d . ?d rdf:type ontology:Q181394 }
Na+/H+ antiporter    TDE0755
1
action count
action filter_type
action find
entity Na+/H+ antiporter    TDE0755
relation encodes
type nutrient
['Na+/H+ antiporter    TDE0755', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?d ) AS ?e ) WHERE { resource:Na+/H+_antiporter____TDE0755 property:encodes ?d . ?d rdf:type ontology:nutrient }
[]
Quantitative Reasoning (Count) (All)
Incomplete count-based ques
Q23110818
Q181394
USER
And what about ABC transporter permease protein    BF1870?
(Q23110818,P688,c(Q181394))
action count
action filter_type
action find
entity Q23110818
relation P688
type Q181394
['Q23110818', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?u ) AS ?q ) WHERE { resource:Q23110818 property:P688 ?u . ?u rdf:type ontology:Q181394 }
ABC transporter permease protein    BF1870
action count
action filter_type
action find
entity ABC transporter permease protein    BF1870
relation encodes
type nutrient
['ABC transporter permease protein    BF1870', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?u ) AS ?q ) WHERE { resource:ABC_transporter_permease_protein____BF1870 property:encodes ?u . ?u rdf:type ontology:nutrient }
[]
nutrient
SYSTEM
1
(Q23110818,P688,c(Q181394))
action count
action filter_type
action find
entity Q23110818
relation P688
type Q181394
[ANSWER]
['Q23110818', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?u ) AS ?q ) WHERE { resource:Q23110818 property:P688 ?u . ?u rdf:type ontology:Q181394 }
1
action count
action filter_type
action find
entity ABC transporter permease protein    BF1870
relation encodes
type nutrient
['ABC transporter permease protein    BF1870', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?u ) AS ?q ) WHERE { resource:ABC_transporter_permease_protein____BF1870 property:encodes ?u . ?u rdf:type ontology:nutrient }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23511984
P703
Q631147
USER
What is the taxon to which pyruvate carboxylase    BC3947 belongs to ?
(Q23511984,P703,c(Q631147))
action filter_type
action find
entity Q23511984
relation P703
type Q631147
['Q23511984', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?h WHERE { resource:Q23511984 property:P703 ?h . ?h rdf:type ontology:Q631147 }
pyruvate carboxylase    BC3947
action filter_type
action find
entity pyruvate carboxylase    BC3947
relation found in taxon
type infraspecific name
['pyruvate carboxylase    BC3947', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?h WHERE { resource:pyruvate_carboxylase____BC3947 property:found_in_taxon ?h . ?h rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102970
SYSTEM
Bacillus cereus ATCC 14579
Q21102970
(Q23511984,P703,c(Q631147))
action filter_type
action find
entity Q23511984
relation P703
type Q631147
[ANSWER]
['Q23511984', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?h WHERE { resource:Q23511984 property:P703 ?h . ?h rdf:type ontology:Q631147 }
Bacillus cereus ATCC 14579
Bacillus cereus ATCC 14579
Bacillus cereus ATCC 14579
action filter_type
action find
entity pyruvate carboxylase    BC3947
relation found in taxon
type infraspecific name
['pyruvate carboxylase    BC3947', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?h WHERE { resource:pyruvate_carboxylase____BC3947 property:found_in_taxon ?h . ?h rdf:type ontology:infraspecific_name }
[]