Simple Question (Direct)
Simple Question
Q21497131
P702
Q863908
USER
What encodes Biogenesis of lysosome-related organelles complex 1 subunit 5 ?
(Q21497131,P702,c(Q863908))
action filter_type
action find
entity Q21497131
relation P702
type Q863908
['Q21497131', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?f WHERE { resource:Q21497131 property:P702 ?f . ?f rdf:type ontology:Q863908 }
Biogenesis of lysosome-related organelles complex 1 subunit 5
action filter_type
action find
entity Biogenesis of lysosome-related organelles complex 1 subunit 5
relation encoded by
type nucleic acid sequence
['Biogenesis of lysosome-related organelles complex 1 subunit 5', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?f WHERE { resource:Biogenesis_of_lysosome-related_organelles_complex_1_subunit_5 property:encoded_by ?f . ?f rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18252480
SYSTEM
Bloc1s5
Q18252480
(Q21497131,P702,c(Q863908))
action filter_type
action find
entity Q21497131
relation P702
type Q863908
[ANSWER] encodes Biogenesis of lysosome-related organelles complex 1 subunit 5
['Q21497131', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?f WHERE { resource:Q21497131 property:P702 ?f . ?f rdf:type ontology:Q863908 }
Bloc1s5
Bloc1s5 encodes Biogenesis of lysosome-related organelles complex 1 subunit 5
Bloc1s5
action filter_type
action find
entity Biogenesis of lysosome-related organelles complex 1 subunit 5
relation encoded by
type nucleic acid sequence
['Biogenesis of lysosome-related organelles complex 1 subunit 5', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?f WHERE { resource:Biogenesis_of_lysosome-related_organelles_complex_1_subunit_5 property:encoded_by ?f . ?f rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21497131
P703
Q16521
USER
Which taxon is that nutrient found in ?
(Q18252480,P703,c(Q16521))
action filter_type
action find
entity Q21497131
relation P703
type Q16521
['Q18252480', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?a WHERE { resource:Q21497131 property:P703 ?a . ?a rdf:type ontology:Q16521 }
Biogenesis of lysosome-related organelles complex 1 subunit 5
action filter_type
action find
entity Biogenesis of lysosome-related organelles complex 1 subunit 5
relation found in taxon
type taxon
['Bloc1s5', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?a WHERE { resource:Biogenesis_of_lysosome-related_organelles_complex_1_subunit_5 property:found_in_taxon ?a . ?a rdf:type ontology:taxon }
[]
taxon
Q83310
SYSTEM
Mus musculus
Q83310
(Q18252480,P703,c(Q16521))
action filter_type
action find
entity Q21497131
relation P703
type Q16521
That nutrient is found in [ANSWER]
['Q18252480', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?a WHERE { resource:Q21497131 property:P703 ?a . ?a rdf:type ontology:Q16521 }
Mus musculus
That nutrient is found in Mus musculus
Mus musculus
action filter_type
action find
entity Biogenesis of lysosome-related organelles complex 1 subunit 5
relation found in taxon
type taxon
['Bloc1s5', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?a WHERE { resource:Biogenesis_of_lysosome-related_organelles_complex_1_subunit_5 property:found_in_taxon ?a . ?a rdf:type ontology:taxon }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21497131
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(c(Q863908),P688,Q83310)
action filter_type
action find_reverse
entity Q21497131
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q83310']
SELECT DISTINCT ?d WHERE { ?d property:P688 resource:Q21497131 . ?d rdf:type ontology:Q863908 }
Biogenesis of lysosome-related organelles complex 1 subunit 5
action filter_type
action find_reverse
entity Biogenesis of lysosome-related organelles complex 1 subunit 5
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Mus musculus']
SELECT DISTINCT ?d WHERE { ?d property:encodes resource:Biogenesis_of_lysosome-related_organelles_complex_1_subunit_5 . ?d rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18252480
SYSTEM
Bloc1s5
Q18252480
(c(Q863908),P688,Q83310)
action filter_type
action find_reverse
entity Q21497131
relation P688
type Q863908
[ANSWER] encodes that nutrient
[{'concept': 'Q863908'}, 'P688', 'Q83310']
SELECT DISTINCT ?d WHERE { ?d property:P688 resource:Q21497131 . ?d rdf:type ontology:Q863908 }
Bloc1s5
Bloc1s5 encodes that nutrient
Bloc1s5
action filter_type
action find_reverse
entity Biogenesis of lysosome-related organelles complex 1 subunit 5
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Mus musculus']
SELECT DISTINCT ?d WHERE { ?d property:encodes resource:Biogenesis_of_lysosome-related_organelles_complex_1_subunit_5 . ?d rdf:type ontology:nucleic_acid_sequence }
[]
Logical Reasoning (All)
Logical|Intersection|Multiple_Relation
Q83310 Q18252480
P703 P702
Q181394
USER
Which nutrients are encoded by Bloc1s5 and are found in Mus musculus ?
AND((c(Q181394),P702,Q18252480), (c(Q181394),P703,Q83310))
action filter_type
action intersection
action find_reverse
entity Q18252480
relation P702
action find_reverse
entity Q83310
relation P703
type Q181394
{'AND': [[{'concept': 'Q181394'}, 'P702', 'Q18252480'], [{'concept': 'Q181394'}, 'P703', 'Q83310']]}
SELECT DISTINCT ?l WHERE { ?l property:P702 resource:Q18252480 . ?l property:P703 resource:Q83310 . ?l rdf:type ontology:Q181394 }
Mus musculus Bloc1s5
action filter_type
action intersection
action find_reverse
entity Bloc1s5
relation encoded by
action find_reverse
entity Mus musculus
relation found in taxon
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'encoded by', 'Bloc1s5'], [{'concept': 'nutrient'}, 'found in taxon', 'Mus musculus']]}
SELECT DISTINCT ?l WHERE { ?l property:encoded_by resource:Bloc1s5 . ?l property:found_in_taxon resource:Mus_musculus . ?l rdf:type ontology:nutrient }
[]
nutrient
Q21497131
SYSTEM
Biogenesis of lysosome-related organelles complex 1 subunit 5
Q21497131
AND((c(Q181394),P702,Q18252480), (c(Q181394),P703,Q83310))
action filter_type
action intersection
action find_reverse
entity Q18252480
relation P702
action find_reverse
entity Q83310
relation P703
type Q181394
[ANSWER] is encoded by Bloc1s5 and is found in Mus musculus
{'AND': [[{'concept': 'Q181394'}, 'P702', 'Q18252480'], [{'concept': 'Q181394'}, 'P703', 'Q83310']]}
SELECT DISTINCT ?l WHERE { ?l property:P702 resource:Q18252480 . ?l property:P703 resource:Q83310 . ?l rdf:type ontology:Q181394 }
Biogenesis of lysosome-related organelles complex 1 subunit 5
Biogenesis of lysosome-related organelles complex 1 subunit 5 is encoded by Bloc1s5 and is found in Mus musculus
Biogenesis of lysosome-related organelles complex 1 subunit 5
action filter_type
action intersection
action find_reverse
entity Bloc1s5
relation encoded by
action find_reverse
entity Mus musculus
relation found in taxon
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'encoded by', 'Bloc1s5'], [{'concept': 'nutrient'}, 'found in taxon', 'Mus musculus']]}
SELECT DISTINCT ?l WHERE { ?l property:encoded_by resource:Bloc1s5 . ?l property:found_in_taxon resource:Mus_musculus . ?l rdf:type ontology:nutrient }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q18252480
P684
Q863908
USER
What is an otrhologus gene for Bloc1s5 ?
(Q18252480,P684,c(Q863908))
action filter_type
action find
entity Q18252480
relation P684
type Q863908
['Q18252480', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?k WHERE { resource:Q18252480 property:P684 ?k . ?k rdf:type ontology:Q863908 }
Bloc1s5
action filter_type
action find
entity Bloc1s5
relation ortholog
type nucleic acid sequence
['Bloc1s5', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?k WHERE { resource:Bloc1s5 property:ortholog ?k . ?k rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18045495
SYSTEM
BLOC1S5
Q18045495
(Q18252480,P684,c(Q863908))
action filter_type
action find
entity Q18252480
relation P684
type Q863908
An otrhologus gene for Bloc1s5 is the [ANSWER]
['Q18252480', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?k WHERE { resource:Q18252480 property:P684 ?k . ?k rdf:type ontology:Q863908 }
BLOC1S5
An otrhologus gene for Bloc1s5 is the BLOC1S5
BLOC1S5
action filter_type
action find
entity Bloc1s5
relation ortholog
type nucleic acid sequence
['Bloc1s5', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?k WHERE { resource:Bloc1s5 property:ortholog ?k . ?k rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q18035465
Q863908
USER
And what about UBD?
(Q18035465,P684,c(Q863908))
action filter_type
action find
entity Q18035465
relation P684
type Q863908
['Q18035465', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?v WHERE { ?v rdf:type ontology:Q863908 . resource:Q18035465 property:P684 ?v }
UBD
action filter_type
action find
entity UBD
relation ortholog
type nucleic acid sequence
['UBD', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?v WHERE { ?v rdf:type ontology:nucleic_acid_sequence . resource:UBD property:ortholog ?v }
[]
nucleic acid sequence
Q18255684
SYSTEM
Ubd
Q18255684
(Q18035465,P684,c(Q863908))
action filter_type
action find
entity Q18035465
relation P684
type Q863908
[ANSWER]
['Q18035465', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?v WHERE { ?v rdf:type ontology:Q863908 . resource:Q18035465 property:P684 ?v }
Ubd
Ubd
action filter_type
action find
entity UBD
relation ortholog
type nucleic acid sequence
['UBD', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?v WHERE { ?v rdf:type ontology:nucleic_acid_sequence . resource:UBD property:ortholog ?v }
[]
Verification (Boolean) (All)
Verification|3 entities, 2 direct, 2(direct) are query entities, subject is indirect
Q18255684 Q24121883 Q21121988
P688
Q181394
USER
Does that nucleic acid sequence encodes hypothetical protein    BN117_3457 and GPI mannosyltransferase 3 ?
(Q18255684,P688,Q24121883) (Q18255684,P688,Q21121988)
action is_in
entity Q18255684
action intersection
action find_reverse
entity Q24121883
relation P688
action find_reverse
entity Q21121988
relation P688
['Q18255684', 'P688', 'Q24121883'] ['Q18255684', 'P688', 'Q21121988']
ASK WHERE { resource:Q18255684 property:P688 resource:Q21121988 . resource:Q18255684 property:P688 resource:Q24121883 }
Ubd hypothetical protein    BN117_3457 GPI mannosyltransferase 3
action is_in
entity Ubd
action intersection
action find_reverse
entity hypothetical protein    BN117_3457
relation encodes
action find_reverse
entity GPI mannosyltransferase 3
relation encodes
['Ubd', 'encodes', 'hypothetical protein    BN117_3457'] ['Ubd', 'encodes', 'GPI mannosyltransferase 3']
ASK WHERE { resource:Ubd property:encodes resource:GPI_mannosyltransferase_3 . resource:Ubd property:encodes resource:hypothetical_protein____BN117_3457 }
[]
nutrient
SYSTEM
NO
(Q18255684,P688,Q24121883) (Q18255684,P688,Q21121988)
action is_in
entity Q18255684
action intersection
action find_reverse
entity Q24121883
relation P688
action find_reverse
entity Q21121988
relation P688
[ANSWER]
['Q18255684', 'P688', 'Q24121883'] ['Q18255684', 'P688', 'Q21121988']
ASK WHERE { resource:Q18255684 property:P688 resource:Q21121988 . resource:Q18255684 property:P688 resource:Q24121883 }
No
action is_in
entity Ubd
action intersection
action find_reverse
entity hypothetical protein    BN117_3457
relation encodes
action find_reverse
entity GPI mannosyltransferase 3
relation encodes
['Ubd', 'encodes', 'hypothetical protein    BN117_3457'] ['Ubd', 'encodes', 'GPI mannosyltransferase 3']
ASK WHERE { resource:Ubd property:encodes resource:GPI_mannosyltransferase_3 . resource:Ubd property:encodes resource:hypothetical_protein____BN117_3457 }
[]
Verification (Boolean) (All)
Verification|3 entities, all direct, 2 are query entities
Q18045495 Q21111721 Q27746910
P688
Q181394
USER
Does BLOC1S5 encode Biogenesis of lysosome-related organelles complex 1 subunit 5 and D-serine/D-alanine/glycine transporter    MSMEG_3587 ?
(Q18045495,P688,Q21111721) (Q18045495,P688,Q27746910)
action is_in
entity Q18045495
action intersection
action find_reverse
entity Q21111721
relation P688
action find_reverse
entity Q27746910
relation P688
['Q18045495', 'P688', 'Q21111721'] ['Q18045495', 'P688', 'Q27746910']
ASK WHERE { resource:Q18045495 property:P688 resource:Q21111721 . resource:Q18045495 property:P688 resource:Q27746910 }
BLOC1S5 Biogenesis of lysosome-related organelles complex 1 subunit 5 D-serine/D-alanine/glycine transporter    MSMEG_3587
action is_in
entity BLOC1S5
action intersection
action find_reverse
entity Biogenesis of lysosome-related organelles complex 1 subunit 5
relation encodes
action find_reverse
entity D-serine/D-alanine/glycine transporter    MSMEG_3587
relation encodes
['BLOC1S5', 'encodes', 'Biogenesis of lysosome-related organelles complex 1 subunit 5'] ['BLOC1S5', 'encodes', 'D-serine/D-alanine/glycine transporter    MSMEG_3587']
ASK WHERE { resource:BLOC1S5 property:encodes resource:Biogenesis_of_lysosome-related_organelles_complex_1_subunit_5 . resource:BLOC1S5 property:encodes resource:D-serine/D-alanine/glycine_transporter____MSMEG_3587 }
[]
nutrient
SYSTEM
YES and NO respectively
(Q18045495,P688,Q21111721) (Q18045495,P688,Q27746910)
action is_in
entity Q18045495
action intersection
action find_reverse
entity Q21111721
relation P688
action find_reverse
entity Q27746910
relation P688
[ANSWER]
['Q18045495', 'P688', 'Q21111721'] ['Q18045495', 'P688', 'Q27746910']
ASK WHERE { resource:Q18045495 property:P688 resource:Q21111721 . resource:Q18045495 property:P688 resource:Q27746910 }
YES and NO respectively
action is_in
entity BLOC1S5
action intersection
action find_reverse
entity Biogenesis of lysosome-related organelles complex 1 subunit 5
relation encodes
action find_reverse
entity D-serine/D-alanine/glycine transporter    MSMEG_3587
relation encodes
['BLOC1S5', 'encodes', 'Biogenesis of lysosome-related organelles complex 1 subunit 5'] ['BLOC1S5', 'encodes', 'D-serine/D-alanine/glycine transporter    MSMEG_3587']
ASK WHERE { resource:BLOC1S5 property:encodes resource:Biogenesis_of_lysosome-related_organelles_complex_1_subunit_5 . resource:BLOC1S5 property:encodes resource:D-serine/D-alanine/glycine_transporter____MSMEG_3587 }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q23115061
Q181394
USER
And what about hypothetical protein    O3K_11250?
(Q23115061,P688,c(Q181394))
action filter_type
action find
entity Q23115061
relation P688
type Q181394
['Q23115061', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?u WHERE { resource:Q23115061 property:P688 ?u . ?u rdf:type ontology:Q181394 }
hypothetical protein    O3K_11250
action filter_type
action find
entity hypothetical protein    O3K_11250
relation encodes
type nutrient
['hypothetical protein    O3K_11250', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?u WHERE { resource:hypothetical_protein____O3K_11250 property:encodes ?u . ?u rdf:type ontology:nutrient }
[]
nutrient
Q24280602
SYSTEM
hypothetical protein    O3K_11250
Q24280602
(Q23115061,P688,c(Q181394))
action filter_type
action find
entity Q23115061
relation P688
type Q181394
[ANSWER]
['Q23115061', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?u WHERE { resource:Q23115061 property:P688 ?u . ?u rdf:type ontology:Q181394 }
hypothetical protein    O3K_11250
hypothetical protein    O3K_11250
action filter_type
action find
entity hypothetical protein    O3K_11250
relation encodes
type nutrient
['hypothetical protein    O3K_11250', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?u WHERE { resource:hypothetical_protein____O3K_11250 property:encodes ?u . ?u rdf:type ontology:nutrient }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q24280602 Q23115061
P702
Q863908
USER
Does hypothetical protein    O3K_11250 encode hypothetical protein    O3K_11250 ?
(Q24280602,P702,Q23115061)
action is_in
entity Q23115061
action find
entity Q24280602
relation P702
['Q24280602', 'P702', 'Q23115061']
ASK WHERE { resource:Q24280602 property:P702 resource:Q23115061 }
hypothetical protein    O3K_11250 hypothetical protein    O3K_11250
action is_in
entity hypothetical protein    O3K_11250
action find
entity hypothetical protein    O3K_11250
relation encoded by
['hypothetical protein    O3K_11250', 'encoded by', 'hypothetical protein    O3K_11250']
ASK WHERE { resource:hypothetical_protein____O3K_11250 property:encoded_by resource:hypothetical_protein____O3K_11250 }
[]
nucleic acid sequence
SYSTEM
YES
(Q24280602,P702,Q23115061)
action is_in
entity Q23115061
action find
entity Q24280602
relation P702
[ANSWER]
['Q24280602', 'P702', 'Q23115061']
ASK WHERE { resource:Q24280602 property:P702 resource:Q23115061 }
Yes
action is_in
entity hypothetical protein    O3K_11250
action find
entity hypothetical protein    O3K_11250
relation encoded by
['hypothetical protein    O3K_11250', 'encoded by', 'hypothetical protein    O3K_11250']
ASK WHERE { resource:hypothetical_protein____O3K_11250 property:encoded_by resource:hypothetical_protein____O3K_11250 }
[]