Simple Question (Direct)
Simple Question
Q24132060
P682
Q2996394
USER
What is the biological process that tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase    ECL_02501 is involved in ?
(Q24132060,P682,c(Q2996394))
action filter_type
action find
entity Q24132060
relation P682
type Q2996394
['Q24132060', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?d WHERE { resource:Q24132060 property:P682 ?d . ?d rdf:type ontology:Q2996394 }
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase    ECL_02501
action filter_type
action find
entity tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase    ECL_02501
relation biological process
type biological process
['tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase    ECL_02501', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?d WHERE { resource:tRNA_(5-methylaminomethyl-2-thiouridylate)-methyltransferase____ECL_02501 property:biological_process ?d . ?d rdf:type ontology:biological_process }
[]
biological process
Q518328
SYSTEM
methylation
Q518328
(Q24132060,P682,c(Q2996394))
action filter_type
action find
entity Q24132060
relation P682
type Q2996394
The biological process that tRNA ( 5 -methylaminomethyl-2-thiouridylate)-methyltransferase is the [ANSWER]
['Q24132060', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?d WHERE { resource:Q24132060 property:P682 ?d . ?d rdf:type ontology:Q2996394 }
methylation
The biological process that tRNA ( 5 -methylaminomethyl-2-thiouridylate)-methyltransferase is the methylation
methylation
action filter_type
action find
entity tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase    ECL_02501
relation biological process
type biological process
['tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase    ECL_02501', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?d WHERE { resource:tRNA_(5-methylaminomethyl-2-thiouridylate)-methyltransferase____ECL_02501 property:biological_process ?d . ?d rdf:type ontology:biological_process }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q24132060
P703
Q631147
USER
Which taxon is tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase    ECL_02501 a part of ?
(Q24132060,P703,c(Q631147))
action filter_type
action find
entity Q24132060
relation P703
type Q631147
['Q24132060', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?o WHERE { resource:Q24132060 property:P703 ?o . ?o rdf:type ontology:Q631147 }
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase    ECL_02501
action filter_type
action find
entity tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase    ECL_02501
relation found in taxon
type infraspecific name
['tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase    ECL_02501', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?o WHERE { resource:tRNA_(5-methylaminomethyl-2-thiouridylate)-methyltransferase____ECL_02501 property:found_in_taxon ?o . ?o rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102928
SYSTEM
Enterobacter cloacae subsp. cloacae ATCC 13047
Q21102928
(Q24132060,P703,c(Q631147))
action filter_type
action find
entity Q24132060
relation P703
type Q631147
Species [ANSWER] is tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase ECL_02501 a part of
['Q24132060', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?o WHERE { resource:Q24132060 property:P703 ?o . ?o rdf:type ontology:Q631147 }
Enterobacter cloacae subsp. cloacae ATCC 13047
Species Enterobacter cloacae subsp. cloacae ATCC 13047 is tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase ECL_02501 a part of
Enterobacter cloacae subsp. cloacae ATCC 13047
action filter_type
action find
entity tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase    ECL_02501
relation found in taxon
type infraspecific name
['tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase    ECL_02501', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?o WHERE { resource:tRNA_(5-methylaminomethyl-2-thiouridylate)-methyltransferase____ECL_02501 property:found_in_taxon ?o . ?o rdf:type ontology:infraspecific_name }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q24132060
P702
Q863908
USER
Which gene encodes tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase    ECL_02501 ?
(Q24132060,P702,c(Q863908))
action filter_type
action find
entity Q24132060
relation P702
type Q863908
['Q24132060', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?n WHERE { resource:Q24132060 property:P702 ?n . ?n rdf:type ontology:Q863908 }
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase    ECL_02501
action filter_type
action find
entity tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase    ECL_02501
relation encoded by
type nucleic acid sequence
['tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase    ECL_02501', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?n WHERE { resource:tRNA_(5-methylaminomethyl-2-thiouridylate)-methyltransferase____ECL_02501 property:encoded_by ?n . ?n rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23079906
SYSTEM
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase    ECL_02501
Q23079906
(Q24132060,P702,c(Q863908))
action filter_type
action find
entity Q24132060
relation P702
type Q863908
TRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase ECL 02501 encodes tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase ECL_02501
['Q24132060', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?n WHERE { resource:Q24132060 property:P702 ?n . ?n rdf:type ontology:Q863908 }
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase    ECL_02501
TRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase ECL 02501 encodes tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase ECL_02501
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase    ECL_02501
action filter_type
action find
entity tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase    ECL_02501
relation encoded by
type nucleic acid sequence
['tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase    ECL_02501', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?n WHERE { resource:tRNA_(5-methylaminomethyl-2-thiouridylate)-methyltransferase____ECL_02501 property:encoded_by ?n . ?n rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q23050775
Q863908
USER
And how about indole-3-glycerol phosphate synthase    RSP_6214?
(Q23050775,P702,c(Q863908))
action filter_type
action find
entity Q23050775
relation P702
type Q863908
['Q23050775', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?w WHERE { resource:Q23050775 property:P702 ?w . ?w rdf:type ontology:Q863908 }
indole-3-glycerol phosphate synthase    RSP_6214
action filter_type
action find
entity indole-3-glycerol phosphate synthase    RSP_6214
relation encoded by
type nucleic acid sequence
['indole-3-glycerol phosphate synthase    RSP_6214', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?w WHERE { resource:indole-3-glycerol_phosphate_synthase____RSP_6214 property:encoded_by ?w . ?w rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23028493
SYSTEM
indole-3-glycerol phosphate synthase    RSP_6214
Q23028493
(Q23050775,P702,c(Q863908))
action filter_type
action find
entity Q23050775
relation P702
type Q863908
[ANSWER]
['Q23050775', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?w WHERE { resource:Q23050775 property:P702 ?w . ?w rdf:type ontology:Q863908 }
indole-3-glycerol phosphate synthase    RSP_6214
indole-3-glycerol phosphate synthase    RSP_6214
action filter_type
action find
entity indole-3-glycerol phosphate synthase    RSP_6214
relation encoded by
type nucleic acid sequence
['indole-3-glycerol phosphate synthase    RSP_6214', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?w WHERE { resource:indole-3-glycerol_phosphate_synthase____RSP_6214 property:encoded_by ?w . ?w rdf:type ontology:nucleic_acid_sequence }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q24280259 Q24132060
P688
Q863908
USER
Which nucleic acid sequences encodes tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase    ECL_02501 or adenosine monophosphate-protein transferase    O3K_02260 ?
OR((c(Q863908),P688,Q24132060), (c(Q863908),P688,Q24280259))
action filter_type
action union
action find_reverse
entity Q24132060
relation P688
action find_reverse
entity Q24280259
relation P688
type Q863908
{'OR': [[{'concept': 'Q863908'}, 'P688', 'Q24132060'], [{'concept': 'Q863908'}, 'P688', 'Q24280259']]}
SELECT DISTINCT ?q WHERE { { VALUES ( ?p ) { ( resource:Q24132060 ) ( resource:Q24280259 ) } . ?q property:P688 ?p } . ?q rdf:type ontology:Q863908 }
adenosine monophosphate-protein transferase    O3K_02260 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase    ECL_02501
action filter_type
action union
action find_reverse
entity tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase    ECL_02501
relation encodes
action find_reverse
entity adenosine monophosphate-protein transferase    O3K_02260
relation encodes
type nucleic acid sequence
{'OR': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase    ECL_02501'], [{'concept': 'nucleic acid sequence'}, 'encodes', 'adenosine monophosphate-protein transferase    O3K_02260']]}
SELECT DISTINCT ?q WHERE { { VALUES ( ?p ) { ( resource:tRNA_(5-methylaminomethyl-2-thiouridylate)-methyltransferase____ECL_02501 ) ( resource:adenosine_monophosphate-protein_transferase____O3K_02260 ) } . ?q property:encodes ?p } . ?q rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23079906 Q23114635
SYSTEM
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase    ECL_02501, adenosine monophosphate-protein transferase    O3K_02260
Q23079906 Q23114635
OR((c(Q863908),P688,Q24132060), (c(Q863908),P688,Q24280259))
action filter_type
action union
action find_reverse
entity Q24132060
relation P688
action find_reverse
entity Q24280259
relation P688
type Q863908
[ANSWERS]
{'OR': [[{'concept': 'Q863908'}, 'P688', 'Q24132060'], [{'concept': 'Q863908'}, 'P688', 'Q24280259']]}
SELECT DISTINCT ?q WHERE { { VALUES ( ?p ) { ( resource:Q24132060 ) ( resource:Q24280259 ) } . ?q property:P688 ?p } . ?q rdf:type ontology:Q863908 }
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase    ECL_02501 adenosine monophosphate-protein transferase    O3K_02260
TRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase ECL 02501 and adenosine monophosphate-protein transferase O3K 02260 encode tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase ECL_02501 or adenosine monophosphate-protein transferase O3K_02260
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase    ECL_02501 adenosine monophosphate-protein transferase    O3K_02260
action filter_type
action union
action find_reverse
entity tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase    ECL_02501
relation encodes
action find_reverse
entity adenosine monophosphate-protein transferase    O3K_02260
relation encodes
type nucleic acid sequence
{'OR': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase    ECL_02501'], [{'concept': 'nucleic acid sequence'}, 'encodes', 'adenosine monophosphate-protein transferase    O3K_02260']]}
SELECT DISTINCT ?q WHERE { { VALUES ( ?p ) { ( resource:tRNA_(5-methylaminomethyl-2-thiouridylate)-methyltransferase____ECL_02501 ) ( resource:adenosine_monophosphate-protein_transferase____O3K_02260 ) } . ?q property:encodes ?p } . ?q rdf:type ontology:nucleic_acid_sequence }
[]
Logical Reasoning (All)
Logical|Intersection|Multiple_Relation
Q14817981 Q23079906
P702 P680
Q181394
USER
Which nutrients are encoded by tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase    ECL_02501 and have ATP binding as their molecular function ?
AND((c(Q181394),P702,Q23079906), (c(Q181394),P680,Q14817981))
action filter_type
action intersection
action find_reverse
entity Q23079906
relation P702
action find_reverse
entity Q14817981
relation P680
type Q181394
{'AND': [[{'concept': 'Q181394'}, 'P702', 'Q23079906'], [{'concept': 'Q181394'}, 'P680', 'Q14817981']]}
SELECT DISTINCT ?s WHERE { ?s property:P702 resource:Q23079906 . ?s property:P680 resource:Q14817981 . ?s rdf:type ontology:Q181394 }
ATP binding tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase    ECL_02501
action filter_type
action intersection
action find_reverse
entity tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase    ECL_02501
relation encoded by
action find_reverse
entity ATP binding
relation molecular function
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'encoded by', 'tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase    ECL_02501'], [{'concept': 'nutrient'}, 'molecular function', 'ATP binding']]}
SELECT DISTINCT ?s WHERE { ?s property:encoded_by resource:tRNA_(5-methylaminomethyl-2-thiouridylate)-methyltransferase____ECL_02501 . ?s property:molecular_function resource:ATP_binding . ?s rdf:type ontology:nutrient }
[]
nutrient
Q24132060
SYSTEM
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase    ECL_02501
Q24132060
AND((c(Q181394),P702,Q23079906), (c(Q181394),P680,Q14817981))
action filter_type
action intersection
action find_reverse
entity Q23079906
relation P702
action find_reverse
entity Q14817981
relation P680
type Q181394
TRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase ECL 02501 is encoded by tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase ECL_02501 and have ATP binding as their molecular function
{'AND': [[{'concept': 'Q181394'}, 'P702', 'Q23079906'], [{'concept': 'Q181394'}, 'P680', 'Q14817981']]}
SELECT DISTINCT ?s WHERE { ?s property:P702 resource:Q23079906 . ?s property:P680 resource:Q14817981 . ?s rdf:type ontology:Q181394 }
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase    ECL_02501
TRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase ECL 02501 is encoded by tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase ECL_02501 and have ATP binding as their molecular function
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase    ECL_02501
action filter_type
action intersection
action find_reverse
entity tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase    ECL_02501
relation encoded by
action find_reverse
entity ATP binding
relation molecular function
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'encoded by', 'tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase    ECL_02501'], [{'concept': 'nutrient'}, 'molecular function', 'ATP binding']]}
SELECT DISTINCT ?s WHERE { ?s property:encoded_by resource:tRNA_(5-methylaminomethyl-2-thiouridylate)-methyltransferase____ECL_02501 . ?s property:molecular_function resource:ATP_binding . ?s rdf:type ontology:nutrient }
[]
Quantitative Reasoning (All)
Quantitative|Min/Max|Mult. entity type
P129
Q181394 Q79529 Q8386
USER
Which nutrients do min number of chemical substances and drugs contact with ?
(c(Q79529)|c(Q8386),P129,c(Q181394))
action argmin
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
[[{'concept': 'Q79529'}, {'concept': 'Q8386'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?m WHERE { { SELECT DISTINCT ( MIN ( ?x ) AS ?f ) { SELECT DISTINCT ( COUNT ( ?y ) AS ?x ) ?i WHERE { VALUES ( ?j ) { ( ontology:Q79529 ) ( ontology:Q8386 ) } . ?y rdf:type ?j } GROUP BY ?i } } . FILTER ( ?e = ?f ) . { SELECT DISTINCT ( COUNT ( ?t ) AS ?e ) ?m WHERE { VALUES ( ?a ) { ( ontology:Q79529 ) ( ontology:Q8386 ) } . ?t rdf:type ?a } GROUP BY ?m } }
action argmin
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
[[{'concept': 'chemical substance'}, {'concept': 'drug'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?m WHERE { { SELECT DISTINCT ( MIN ( ?x ) AS ?f ) { SELECT DISTINCT ( COUNT ( ?y ) AS ?x ) ?i WHERE { VALUES ( ?j ) { ( ontology:chemical_substance ) ( ontology:drug ) } . ?y rdf:type ?j } GROUP BY ?i } } . FILTER ( ?e = ?f ) . { SELECT DISTINCT ( COUNT ( ?t ) AS ?e ) ?m WHERE { VALUES ( ?a ) { ( ontology:chemical_substance ) ( ontology:drug ) } . ?t rdf:type ?a } GROUP BY ?m } }
[]
nutrient chemical substance drug
Q423510 Q15324125 Q1407929
SYSTEM
Amyloid beta A4 protein, Transient receptor potential cation channel subfamily V member 4, Cytochrome P450 1A1
Q21494718 Q21108693 Q1407929 Q21173169 Q423510 Q21113552 Q21496578 Q21496575 Q21496576 Q15324125 Q21154430 Q3931282 Q21139123 Q21496918 Q5014947 Q21172884 Q21172886 Q315860 Q1979313 Q21495791
(c(Q79529)|c(Q8386),P129,c(Q181394))
action argmin
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
[ANSWERS] min number of chemical substances and drugs contact with
[[{'concept': 'Q79529'}, {'concept': 'Q8386'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?m WHERE { { SELECT DISTINCT ( MIN ( ?x ) AS ?f ) { SELECT DISTINCT ( COUNT ( ?y ) AS ?x ) ?i WHERE { VALUES ( ?j ) { ( ontology:Q79529 ) ( ontology:Q8386 ) } . ?y rdf:type ?j } GROUP BY ?i } } . FILTER ( ?e = ?f ) . { SELECT DISTINCT ( COUNT ( ?t ) AS ?e ) ?m WHERE { VALUES ( ?a ) { ( ontology:Q79529 ) ( ontology:Q8386 ) } . ?t rdf:type ?a } GROUP BY ?m } }
Lysophosphatidic acid receptor 2 G-protein coupled receptor 87 Cytochrome P450 1A1 Lysophosphatidic acid receptor 3 Amyloid beta A4 protein ATP-sensitive inward rectifier potassium channel 14 Lysophosphatidic acid receptor 3 Lysophosphatidic acid receptor 4 Lysophosphatidic acid receptor 6 Transient receptor potential cation channel subfamily V member 4 Lysophosphatidic acid receptor 4 Calcitonin receptor Lysophosphatidic acid receptor 2 Lysophosphatidic acid receptor 1 Cytochrome P450 1B1 Lysophosphatidic acid receptor 6 Lysophosphatidic acid receptor 5 Calcitonin Very low-density lipoprotein receptor Metabotropic glutamate receptor 5
Amyloid beta A4 protein, Transient receptor potential cation channel subfamily V member 4 and Cytochrome P450 1A1 min number of chemical substances and drugs contact with
Amyloid beta A4 protein Transient receptor potential cation channel subfamily V member 4 Cytochrome P450 1A1
action argmin
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
[[{'concept': 'chemical substance'}, {'concept': 'drug'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?m WHERE { { SELECT DISTINCT ( MIN ( ?x ) AS ?f ) { SELECT DISTINCT ( COUNT ( ?y ) AS ?x ) ?i WHERE { VALUES ( ?j ) { ( ontology:chemical_substance ) ( ontology:drug ) } . ?y rdf:type ?j } GROUP BY ?i } } . FILTER ( ?e = ?f ) . { SELECT DISTINCT ( COUNT ( ?t ) AS ?e ) ?m WHERE { VALUES ( ?a ) { ( ontology:chemical_substance ) ( ontology:drug ) } . ?t rdf:type ?a } GROUP BY ?m } }
[]