Simple Question (Direct)
Simple Question
Q24098591
P702
Q863908
USER
Which gene encodes Holliday junction DNA helicase RuvB    XCC3023 ?
(Q24098591,P702,c(Q863908))
action filter_type
action find
entity Q24098591
relation P702
type Q863908
['Q24098591', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?r WHERE { ?r rdf:type ontology:Q863908 . resource:Q24098591 property:P702 ?r }
Holliday junction DNA helicase RuvB    XCC3023
action filter_type
action find
entity Holliday junction DNA helicase RuvB    XCC3023
relation encoded by
type nucleic acid sequence
['Holliday junction DNA helicase RuvB    XCC3023', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?r WHERE { ?r rdf:type ontology:nucleic_acid_sequence . resource:Holliday_junction_DNA_helicase_RuvB____XCC3023 property:encoded_by ?r }
[]
nucleic acid sequence
Q23158713
SYSTEM
Holliday junction DNA helicase RuvB    XCC3023
Q23158713
(Q24098591,P702,c(Q863908))
action filter_type
action find
entity Q24098591
relation P702
type Q863908
Holliday junction DNA helicase RuvB XCC3023 encodes Holliday junction DNA helicase RuvB XCC3023
['Q24098591', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?r WHERE { ?r rdf:type ontology:Q863908 . resource:Q24098591 property:P702 ?r }
Holliday junction DNA helicase RuvB    XCC3023
Holliday junction DNA helicase RuvB XCC3023 encodes Holliday junction DNA helicase RuvB XCC3023
Holliday junction DNA helicase RuvB    XCC3023
action filter_type
action find
entity Holliday junction DNA helicase RuvB    XCC3023
relation encoded by
type nucleic acid sequence
['Holliday junction DNA helicase RuvB    XCC3023', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?r WHERE { ?r rdf:type ontology:nucleic_acid_sequence . resource:Holliday_junction_DNA_helicase_RuvB____XCC3023 property:encoded_by ?r }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q24098591
P703
Q631147
USER
Which infraspecific name is Holliday junction DNA helicase RuvB    XCC3023 found in ?
(Q24098591,P703,c(Q631147))
action filter_type
action find
entity Q24098591
relation P703
type Q631147
['Q24098591', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?p WHERE { resource:Q24098591 property:P703 ?p . ?p rdf:type ontology:Q631147 }
Holliday junction DNA helicase RuvB    XCC3023
action filter_type
action find
entity Holliday junction DNA helicase RuvB    XCC3023
relation found in taxon
type infraspecific name
['Holliday junction DNA helicase RuvB    XCC3023', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?p WHERE { resource:Holliday_junction_DNA_helicase_RuvB____XCC3023 property:found_in_taxon ?p . ?p rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21079491
SYSTEM
Xanthomonas campestris pv. campestris str. ATCC 33913
Q21079491
(Q24098591,P703,c(Q631147))
action filter_type
action find
entity Q24098591
relation P703
type Q631147
[ANSWER] is Holliday junction DNA helicase RuvB XCC3023 found in
['Q24098591', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?p WHERE { resource:Q24098591 property:P703 ?p . ?p rdf:type ontology:Q631147 }
Xanthomonas campestris pv. campestris str. ATCC 33913
Xanthomonas campestris pv. campestris str. ATCC 33913 is Holliday junction DNA helicase RuvB XCC3023 found in
Xanthomonas campestris pv. campestris str. ATCC 33913
action filter_type
action find
entity Holliday junction DNA helicase RuvB    XCC3023
relation found in taxon
type infraspecific name
['Holliday junction DNA helicase RuvB    XCC3023', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?p WHERE { resource:Holliday_junction_DNA_helicase_RuvB____XCC3023 property:found_in_taxon ?p . ?p rdf:type ontology:infraspecific_name }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q23272136
Q631147
USER
And how about TetR family transcriptional regulator    MSMEG_6628?
(Q23272136,P703,c(Q631147))
action filter_type
action find
entity Q23272136
relation P703
type Q631147
['Q23272136', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?f WHERE { resource:Q23272136 property:P703 ?f . ?f rdf:type ontology:Q631147 }
TetR family transcriptional regulator    MSMEG_6628
action filter_type
action find
entity TetR family transcriptional regulator    MSMEG_6628
relation found in taxon
type infraspecific name
['TetR family transcriptional regulator    MSMEG_6628', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?f WHERE { resource:TetR_family_transcriptional_regulator____MSMEG_6628 property:found_in_taxon ?f . ?f rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102986
SYSTEM
Mycobacterium smegmatis str. MC2 155
Q21102986
(Q23272136,P703,c(Q631147))
action filter_type
action find
entity Q23272136
relation P703
type Q631147
[ANSWER]
['Q23272136', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?f WHERE { resource:Q23272136 property:P703 ?f . ?f rdf:type ontology:Q631147 }
Mycobacterium smegmatis str. MC2 155
Mycobacterium smegmatis str. MC2 155
action filter_type
action find
entity TetR family transcriptional regulator    MSMEG_6628
relation found in taxon
type infraspecific name
['TetR family transcriptional regulator    MSMEG_6628', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?f WHERE { resource:TetR_family_transcriptional_regulator____MSMEG_6628 property:found_in_taxon ?f . ?f rdf:type ontology:infraspecific_name }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q23140433
Q631147
USER
And also tell me about bifunctional acetaldehyde-CoA/alcohol dehydrogenase    SDY_1295?
(Q23140433,P703,c(Q631147))
action filter_type
action find
entity Q23140433
relation P703
type Q631147
['Q23140433', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?y WHERE { resource:Q23140433 property:P703 ?y . ?y rdf:type ontology:Q631147 }
bifunctional acetaldehyde-CoA/alcohol dehydrogenase    SDY_1295
action filter_type
action find
entity bifunctional acetaldehyde-CoA/alcohol dehydrogenase    SDY_1295
relation found in taxon
type infraspecific name
['bifunctional acetaldehyde-CoA/alcohol dehydrogenase    SDY_1295', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?y WHERE { resource:bifunctional_acetaldehyde-CoA/alcohol_dehydrogenase____SDY_1295 property:found_in_taxon ?y . ?y rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102940
SYSTEM
Shigella dysenteriae Sd197
Q21102940
(Q23140433,P703,c(Q631147))
action filter_type
action find
entity Q23140433
relation P703
type Q631147
[ANSWER]
['Q23140433', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?y WHERE { resource:Q23140433 property:P703 ?y . ?y rdf:type ontology:Q631147 }
Shigella dysenteriae Sd197
Shigella dysenteriae Sd197
action filter_type
action find
entity bifunctional acetaldehyde-CoA/alcohol dehydrogenase    SDY_1295
relation found in taxon
type infraspecific name
['bifunctional acetaldehyde-CoA/alcohol dehydrogenase    SDY_1295', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?y WHERE { resource:bifunctional_acetaldehyde-CoA/alcohol_dehydrogenase____SDY_1295 property:found_in_taxon ?y . ?y rdf:type ontology:infraspecific_name }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q21102940 Q18255357
P703
Q863908
USER
Is Wiz a part of the taxon that infraspecific name ?
(Q18255357,P703,Q21102940)
action is_in
entity Q18255357
action find
entity Q21102940
relation P703
['Q18255357', 'P703', 'Q21102940']
ASK WHERE { resource:Q21102940 property:P703 resource:Q18255357 }
Shigella dysenteriae Sd197 Wiz
action is_in
entity Wiz
action find
entity Shigella dysenteriae Sd197
relation found in taxon
['Wiz', 'found in taxon', 'Shigella dysenteriae Sd197']
ASK WHERE { resource:Shigella_dysenteriae_Sd197 property:found_in_taxon resource:Wiz }
[]
nucleic acid sequence
SYSTEM
NO
(Q18255357,P703,Q21102940)
action is_in
entity Q18255357
action find
entity Q21102940
relation P703
[ANSWER]
['Q18255357', 'P703', 'Q21102940']
ASK WHERE { resource:Q21102940 property:P703 resource:Q18255357 }
No
action is_in
entity Wiz
action find
entity Shigella dysenteriae Sd197
relation found in taxon
['Wiz', 'found in taxon', 'Shigella dysenteriae Sd197']
ASK WHERE { resource:Shigella_dysenteriae_Sd197 property:found_in_taxon resource:Wiz }
[]
Logical Reasoning (All)
Logical|Intersection|Multiple_Relation
Q40260 Q18255357
P702 P681
Q181394
USER
Which nutrients are the gene that are encoded by Wiz and have nucleus as their cell component ?
AND((c(Q181394),P702,Q18255357), (c(Q181394),P681,Q40260))
action filter_type
action intersection
action find_reverse
entity Q18255357
relation P702
action find_reverse
entity Q40260
relation P681
type Q181394
{'AND': [[{'concept': 'Q181394'}, 'P702', 'Q18255357'], [{'concept': 'Q181394'}, 'P681', 'Q40260']]}
SELECT DISTINCT ?e WHERE { ?e property:P702 resource:Q18255357 . ?e property:P681 resource:Q40260 . ?e rdf:type ontology:Q181394 }
nucleus Wiz
action filter_type
action intersection
action find_reverse
entity Wiz
relation encoded by
action find_reverse
entity nucleus
relation cell component
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'encoded by', 'Wiz'], [{'concept': 'nutrient'}, 'cell component', 'nucleus']]}
SELECT DISTINCT ?e WHERE { ?e property:encoded_by resource:Wiz . ?e property:cell_component resource:nucleus . ?e rdf:type ontology:nutrient }
[]
nutrient
Q21992574
SYSTEM
Protein Wiz
Q21992574
AND((c(Q181394),P702,Q18255357), (c(Q181394),P681,Q40260))
action filter_type
action intersection
action find_reverse
entity Q18255357
relation P702
action find_reverse
entity Q40260
relation P681
type Q181394
[ANSWER] is the gene that is encoded by Wiz and have nucleus as their cell component
{'AND': [[{'concept': 'Q181394'}, 'P702', 'Q18255357'], [{'concept': 'Q181394'}, 'P681', 'Q40260']]}
SELECT DISTINCT ?e WHERE { ?e property:P702 resource:Q18255357 . ?e property:P681 resource:Q40260 . ?e rdf:type ontology:Q181394 }
Protein Wiz
Protein Wiz is the gene that is encoded by Wiz and have nucleus as their cell component
Protein Wiz
action filter_type
action intersection
action find_reverse
entity Wiz
relation encoded by
action find_reverse
entity nucleus
relation cell component
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'encoded by', 'Wiz'], [{'concept': 'nutrient'}, 'cell component', 'nucleus']]}
SELECT DISTINCT ?e WHERE { ?e property:encoded_by resource:Wiz . ?e property:cell_component resource:nucleus . ?e rdf:type ontology:nutrient }
[]
Verification (Boolean) (All)
Verification|3 entities, all direct, 2 are query entities
Q21992574 Q27540966 Q18255357
P702
Q863908
USER
Is Protein Wiz encoded by ribosome biosynthesis protein RRB1 YMR131C and Wiz ?
(Q21992574,P702,Q27540966) (Q21992574,P702,Q18255357)
action is_in
entity Q21992574
action intersection
action find_reverse
entity Q27540966
relation P702
action find_reverse
entity Q18255357
relation P702
['Q21992574', 'P702', 'Q27540966'] ['Q21992574', 'P702', 'Q18255357']
ASK WHERE { resource:Q21992574 property:P702 resource:Q27540966 . resource:Q21992574 property:P702 resource:Q18255357 }
Protein Wiz ribosome biosynthesis protein RRB1 YMR131C Wiz
action is_in
entity Protein Wiz
action intersection
action find_reverse
entity ribosome biosynthesis protein RRB1 YMR131C
relation encoded by
action find_reverse
entity Wiz
relation encoded by
['Protein Wiz', 'encoded by', 'ribosome biosynthesis protein RRB1 YMR131C'] ['Protein Wiz', 'encoded by', 'Wiz']
ASK WHERE { resource:Protein_Wiz property:encoded_by resource:ribosome_biosynthesis_protein_RRB1_YMR131C . resource:Protein_Wiz property:encoded_by resource:Wiz }
[]
nucleic acid sequence
SYSTEM
NO and YES respectively
(Q21992574,P702,Q27540966) (Q21992574,P702,Q18255357)
action is_in
entity Q21992574
action intersection
action find_reverse
entity Q27540966
relation P702
action find_reverse
entity Q18255357
relation P702
[ANSWER]
['Q21992574', 'P702', 'Q27540966'] ['Q21992574', 'P702', 'Q18255357']
ASK WHERE { resource:Q21992574 property:P702 resource:Q27540966 . resource:Q21992574 property:P702 resource:Q18255357 }
NO and YES respectively
action is_in
entity Protein Wiz
action intersection
action find_reverse
entity ribosome biosynthesis protein RRB1 YMR131C
relation encoded by
action find_reverse
entity Wiz
relation encoded by
['Protein Wiz', 'encoded by', 'ribosome biosynthesis protein RRB1 YMR131C'] ['Protein Wiz', 'encoded by', 'Wiz']
ASK WHERE { resource:Protein_Wiz property:encoded_by resource:ribosome_biosynthesis_protein_RRB1_YMR131C . resource:Protein_Wiz property:encoded_by resource:Wiz }
[]