Simple Question (Direct)
Simple Question
Q23448837
P702
Q863908
USER
Which nucleic acid sequence encodes dimethyladenosine transferase    RP672 ?
(Q23448837,P702,c(Q863908))
action filter_type
action find
entity Q23448837
relation P702
type Q863908
['Q23448837', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?t WHERE { resource:Q23448837 property:P702 ?t . ?t rdf:type ontology:Q863908 }
dimethyladenosine transferase    RP672
action filter_type
action find
entity dimethyladenosine transferase    RP672
relation encoded by
type nucleic acid sequence
['dimethyladenosine transferase    RP672', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?t WHERE { resource:dimethyladenosine_transferase____RP672 property:encoded_by ?t . ?t rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23381112
SYSTEM
dimethyladenosine transferase    RP672
Q23381112
(Q23448837,P702,c(Q863908))
action filter_type
action find
entity Q23448837
relation P702
type Q863908
Dimethyladenosine transferase RP672 encodes dimethyladenosine transferase RP672
['Q23448837', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?t WHERE { resource:Q23448837 property:P702 ?t . ?t rdf:type ontology:Q863908 }
dimethyladenosine transferase    RP672
Dimethyladenosine transferase RP672 encodes dimethyladenosine transferase RP672
dimethyladenosine transferase    RP672
action filter_type
action find
entity dimethyladenosine transferase    RP672
relation encoded by
type nucleic acid sequence
['dimethyladenosine transferase    RP672', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?t WHERE { resource:dimethyladenosine_transferase____RP672 property:encoded_by ?t . ?t rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23381112
P703
Q631147
USER
Which taxon does that nucleic acid sequence belong to ?
(Q23381112,P703,c(Q631147))
action filter_type
action find
entity Q23381112
relation P703
type Q631147
['Q23381112', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?w WHERE { resource:Q23381112 property:P703 ?w . ?w rdf:type ontology:Q631147 }
dimethyladenosine transferase    RP672
action filter_type
action find
entity dimethyladenosine transferase    RP672
relation found in taxon
type infraspecific name
['dimethyladenosine transferase    RP672', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?w WHERE { resource:dimethyladenosine_transferase____RP672 property:found_in_taxon ?w . ?w rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102949
SYSTEM
Rickettsia prowazekii str. Madrid E
Q21102949
(Q23381112,P703,c(Q631147))
action filter_type
action find
entity Q23381112
relation P703
type Q631147
That nucleic acid sequence belongs to [ANSWER]
['Q23381112', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?w WHERE { resource:Q23381112 property:P703 ?w . ?w rdf:type ontology:Q631147 }
Rickettsia prowazekii str. Madrid E
That nucleic acid sequence belongs to Rickettsia prowazekii str. Madrid E
Rickettsia prowazekii str. Madrid E
action filter_type
action find
entity dimethyladenosine transferase    RP672
relation found in taxon
type infraspecific name
['dimethyladenosine transferase    RP672', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?w WHERE { resource:dimethyladenosine_transferase____RP672 property:found_in_taxon ?w . ?w rdf:type ontology:infraspecific_name }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q23565470
Q631147
USER
And also tell me about thiamine biosynthesis lipoprotein ApbE    STY2492?
(Q23565470,P703,c(Q631147))
action filter_type
action find
entity Q23565470
relation P703
type Q631147
['Q23565470', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?o WHERE { resource:Q23565470 property:P703 ?o . ?o rdf:type ontology:Q631147 }
thiamine biosynthesis lipoprotein ApbE    STY2492
action filter_type
action find
entity thiamine biosynthesis lipoprotein ApbE    STY2492
relation found in taxon
type infraspecific name
['thiamine biosynthesis lipoprotein ApbE    STY2492', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?o WHERE { resource:thiamine_biosynthesis_lipoprotein_ApbE____STY2492 property:found_in_taxon ?o . ?o rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102997
SYSTEM
Salmonella enterica subsp. enterica serovar Typhi str. CT18
Q21102997
(Q23565470,P703,c(Q631147))
action filter_type
action find
entity Q23565470
relation P703
type Q631147
[ANSWER]
['Q23565470', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?o WHERE { resource:Q23565470 property:P703 ?o . ?o rdf:type ontology:Q631147 }
Salmonella enterica subsp. enterica serovar Typhi str. CT18
Salmonella enterica subsp. enterica serovar Typhi str. CT18
action filter_type
action find
entity thiamine biosynthesis lipoprotein ApbE    STY2492
relation found in taxon
type infraspecific name
['thiamine biosynthesis lipoprotein ApbE    STY2492', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?o WHERE { resource:thiamine_biosynthesis_lipoprotein_ApbE____STY2492 property:found_in_taxon ?o . ?o rdf:type ontology:infraspecific_name }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q21102997 Q18248633
P703
Q863908
USER
Is Cyp2j5 found in that infraspecific name ?
(Q18248633,P703,Q21102997)
action is_in
entity Q18248633
action find
entity Q21102997
relation P703
['Q18248633', 'P703', 'Q21102997']
ASK WHERE { resource:Q21102997 property:P703 resource:Q18248633 }
Salmonella enterica subsp. enterica serovar Typhi str. CT18 Cyp2j5
action is_in
entity Cyp2j5
action find
entity Salmonella enterica subsp. enterica serovar Typhi str. CT18
relation found in taxon
['Cyp2j5', 'found in taxon', 'Salmonella enterica subsp. enterica serovar Typhi str. CT18']
ASK WHERE { resource:Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18 property:found_in_taxon resource:Cyp2j5 }
[]
nucleic acid sequence
SYSTEM
NO
(Q18248633,P703,Q21102997)
action is_in
entity Q18248633
action find
entity Q21102997
relation P703
[ANSWER]
['Q18248633', 'P703', 'Q21102997']
ASK WHERE { resource:Q21102997 property:P703 resource:Q18248633 }
No
action is_in
entity Cyp2j5
action find
entity Salmonella enterica subsp. enterica serovar Typhi str. CT18
relation found in taxon
['Cyp2j5', 'found in taxon', 'Salmonella enterica subsp. enterica serovar Typhi str. CT18']
ASK WHERE { resource:Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18 property:found_in_taxon resource:Cyp2j5 }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Mult. entity type
Q23448837 Q21413767
P702
Q863908
USER
How many nucleic acid sequences genes encode dimethyladenosine transferase    RP672 or let-7a ?
(Q23448837,P702,c(Q863908)) (Q21413767,P702,c(Q863908))
action count
action union
action filter_type
action find
entity Q23448837
relation P702
type Q863908
action filter_type
action find
entity Q21413767
relation P702
type Q863908
['Q23448837', 'P702', {'concept': 'Q863908'}] ['Q21413767', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ( COUNT ( ?a ) AS ?y ) WHERE { ?f property:P702 ?a . VALUES ( ?f ) { ( resource:Q23448837 ) ( resource:Q21413767 ) } }
dimethyladenosine transferase    RP672 let-7a
action count
action union
action filter_type
action find
entity dimethyladenosine transferase    RP672
relation encoded by
type nucleic acid sequence
action filter_type
action find
entity let-7a
relation encoded by
type nucleic acid sequence
['dimethyladenosine transferase    RP672', 'encoded by', {'concept': 'nucleic acid sequence'}] ['let-7a', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ( COUNT ( ?a ) AS ?y ) WHERE { ?f property:encoded_by ?a . VALUES ( ?f ) { ( resource:dimethyladenosine_transferase____RP672 ) ( resource:let-7a ) } }
[]
nucleic acid sequence
SYSTEM
2
Q18304129 Q23381112
(Q23448837,P702,c(Q863908)) (Q21413767,P702,c(Q863908))
action count
action union
action filter_type
action find
entity Q23448837
relation P702
type Q863908
action filter_type
action find
entity Q21413767
relation P702
type Q863908
[ANSWER]
['Q23448837', 'P702', {'concept': 'Q863908'}] ['Q21413767', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ( COUNT ( ?a ) AS ?y ) WHERE { ?f property:P702 ?a . VALUES ( ?f ) { ( resource:Q23448837 ) ( resource:Q21413767 ) } }
Mirlet7a-1 dimethyladenosine transferase    RP672
2
action count
action union
action filter_type
action find
entity dimethyladenosine transferase    RP672
relation encoded by
type nucleic acid sequence
action filter_type
action find
entity let-7a
relation encoded by
type nucleic acid sequence
['dimethyladenosine transferase    RP672', 'encoded by', {'concept': 'nucleic acid sequence'}] ['let-7a', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ( COUNT ( ?a ) AS ?y ) WHERE { ?f property:encoded_by ?a . VALUES ( ?f ) { ( resource:dimethyladenosine_transferase____RP672 ) ( resource:let-7a ) } }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23448837
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
action filter_type
action find_reverse
entity Q23448837
relation P688
type Q863908
SELECT DISTINCT ?e WHERE { ?e property:P688 resource:Q23448837 . ?e rdf:type ontology:Q863908 }
dimethyladenosine transferase    RP672
action filter_type
action find_reverse
entity dimethyladenosine transferase    RP672
relation encodes
type nucleic acid sequence
SELECT DISTINCT ?e WHERE { ?e property:encodes resource:dimethyladenosine_transferase____RP672 . ?e rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23381112
SYSTEM
dimethyladenosine transferase    RP672
Q23381112
action filter_type
action find_reverse
entity Q23448837
relation P688
type Q863908
Dimethyladenosine transferase RP672 encodes that nutrient
SELECT DISTINCT ?e WHERE { ?e property:P688 resource:Q23448837 . ?e rdf:type ontology:Q863908 }
dimethyladenosine transferase    RP672
Dimethyladenosine transferase RP672 encodes that nutrient
dimethyladenosine transferase    RP672
action filter_type
action find_reverse
entity dimethyladenosine transferase    RP672
relation encodes
type nucleic acid sequence
SELECT DISTINCT ?e WHERE { ?e property:encodes resource:dimethyladenosine_transferase____RP672 . ?e rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q23381112 Q23611739
P702
Q181394
USER
Does that nucleic acid sequence encode hypothetical protein    tll0555 ?
(Q23611739,P702,Q23381112)
action is_in
entity Q23611739
action find
entity Q23381112
relation P702
['Q23611739', 'P702', 'Q23381112']
ASK WHERE { resource:Q23381112 property:P702 resource:Q23611739 }
dimethyladenosine transferase    RP672 hypothetical protein    tll0555
action is_in
entity hypothetical protein    tll0555
action find
entity dimethyladenosine transferase    RP672
relation encoded by
['hypothetical protein    tll0555', 'encoded by', 'dimethyladenosine transferase    RP672']
ASK WHERE { resource:dimethyladenosine_transferase____RP672 property:encoded_by resource:hypothetical_protein____tll0555 }
[]
nutrient
SYSTEM
NO
(Q23611739,P702,Q23381112)
action is_in
entity Q23611739
action find
entity Q23381112
relation P702
[ANSWER]
['Q23611739', 'P702', 'Q23381112']
ASK WHERE { resource:Q23381112 property:P702 resource:Q23611739 }
No
action is_in
entity hypothetical protein    tll0555
action find
entity dimethyladenosine transferase    RP672
relation encoded by
['hypothetical protein    tll0555', 'encoded by', 'dimethyladenosine transferase    RP672']
ASK WHERE { resource:dimethyladenosine_transferase____RP672 property:encoded_by resource:hypothetical_protein____tll0555 }
[]