Simple Question (Direct)
Simple Question
Q21122871
P682
Q2996394
USER
What is the biological process that Probable tRNA (uracil-O(2)-)-methyltransferase is involved in ?
(Q21122871,P682,c(Q2996394))
action filter_type
action find
entity Q21122871
relation P682
type Q2996394
['Q21122871', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?u WHERE { resource:Q21122871 property:P682 ?u . ?u rdf:type ontology:Q2996394 }
Probable tRNA (uracil-O(2)-)-methyltransferase
action filter_type
action find
entity Probable tRNA (uracil-O(2)-)-methyltransferase
relation biological process
type biological process
['Probable tRNA (uracil-O(2)-)-methyltransferase', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?u WHERE { resource:Probable_tRNA_(uracil-O(2)-)-methyltransferase property:biological_process ?u . ?u rdf:type ontology:biological_process }
[]
biological process
Q518328
SYSTEM
methylation
Q518328
(Q21122871,P682,c(Q2996394))
action filter_type
action find
entity Q21122871
relation P682
type Q2996394
The biological process that Probable tRNA ( uracil-O ( 2 ) -)-methyltransferase is involved in is l [ANSWER]
['Q21122871', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?u WHERE { resource:Q21122871 property:P682 ?u . ?u rdf:type ontology:Q2996394 }
methylation
The biological process that Probable tRNA ( uracil-O ( 2 ) -)-methyltransferase is involved in is l methylation
methylation
action filter_type
action find
entity Probable tRNA (uracil-O(2)-)-methyltransferase
relation biological process
type biological process
['Probable tRNA (uracil-O(2)-)-methyltransferase', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?u WHERE { resource:Probable_tRNA_(uracil-O(2)-)-methyltransferase property:biological_process ?u . ?u rdf:type ontology:biological_process }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21122871
P702
Q863908
USER
What encodes Probable tRNA (uracil-O(2)-)-methyltransferase ?
(Q21122871,P702,c(Q863908))
action filter_type
action find
entity Q21122871
relation P702
type Q863908
['Q21122871', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?y WHERE { resource:Q21122871 property:P702 ?y . ?y rdf:type ontology:Q863908 }
Probable tRNA (uracil-O(2)-)-methyltransferase
action filter_type
action find
entity Probable tRNA (uracil-O(2)-)-methyltransferase
relation encoded by
type nucleic acid sequence
['Probable tRNA (uracil-O(2)-)-methyltransferase', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?y WHERE { resource:Probable_tRNA_(uracil-O(2)-)-methyltransferase property:encoded_by ?y . ?y rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18052217
SYSTEM
TRMT44
Q18052217
(Q21122871,P702,c(Q863908))
action filter_type
action find
entity Q21122871
relation P702
type Q863908
[ANSWER] encodes Probable tRNA (uracil-O(2)-)-methyltransferase
['Q21122871', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?y WHERE { resource:Q21122871 property:P702 ?y . ?y rdf:type ontology:Q863908 }
TRMT44
TRMT44 encodes Probable tRNA (uracil-O(2)-)-methyltransferase
TRMT44
action filter_type
action find
entity Probable tRNA (uracil-O(2)-)-methyltransferase
relation encoded by
type nucleic acid sequence
['Probable tRNA (uracil-O(2)-)-methyltransferase', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?y WHERE { resource:Probable_tRNA_(uracil-O(2)-)-methyltransferase property:encoded_by ?y . ?y rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18052217
P684
Q863908
USER
What is the name of the species that has that one as its orthologous gene ?
(c(Q863908),P684,Q18052217)
action filter_type
action find
entity Q18052217
relation P684
type Q863908
[{'concept': 'Q863908'}, 'P684', 'Q18052217']
SELECT DISTINCT ?j WHERE { resource:Q18052217 property:P684 ?j . ?j rdf:type ontology:Q863908 }
TRMT44
action filter_type
action find
entity TRMT44
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'TRMT44']
SELECT DISTINCT ?j WHERE { resource:TRMT44 property:ortholog ?j . ?j rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18269603
SYSTEM
Trmt44
Q18269603
(c(Q863908),P684,Q18052217)
action filter_type
action find
entity Q18052217
relation P684
type Q863908
The name of the species that has that one as its orthologous gene is the [ANSWER]
[{'concept': 'Q863908'}, 'P684', 'Q18052217']
SELECT DISTINCT ?j WHERE { resource:Q18052217 property:P684 ?j . ?j rdf:type ontology:Q863908 }
Trmt44
The name of the species that has that one as its orthologous gene is the Trmt44
Trmt44
action filter_type
action find
entity TRMT44
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'TRMT44']
SELECT DISTINCT ?j WHERE { resource:TRMT44 property:ortholog ?j . ?j rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, subject is indirect
Q18269603 Q18052217
P684
Q863908
USER
Is TRMT44 an orthologous gene for that one ?
(Q18269603,P684,Q18052217)
action is_in
entity Q18052217
action find
entity Q18269603
relation P684
['Q18269603', 'P684', 'Q18052217']
ASK WHERE { resource:Q18269603 property:P684 resource:Q18052217 }
Trmt44 TRMT44
action is_in
entity TRMT44
action find
entity Trmt44
relation ortholog
['Trmt44', 'ortholog', 'TRMT44']
ASK WHERE { resource:Trmt44 property:ortholog resource:TRMT44 }
[]
nucleic acid sequence
SYSTEM
YES
(Q18269603,P684,Q18052217)
action is_in
entity Q18052217
action find
entity Q18269603
relation P684
[ANSWER]
['Q18269603', 'P684', 'Q18052217']
ASK WHERE { resource:Q18269603 property:P684 resource:Q18052217 }
Yes
action is_in
entity TRMT44
action find
entity Trmt44
relation ortholog
['Trmt44', 'ortholog', 'TRMT44']
ASK WHERE { resource:Trmt44 property:ortholog resource:TRMT44 }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23426528 Q21122871
P688
Q863908
USER
Which nucleic acid sequences encodes Probable tRNA (uracil-O(2)-)-methyltransferase or phosphatidylserine synthase    YE3248 ?
OR((c(Q863908),P688,Q21122871), (c(Q863908),P688,Q23426528))
action filter_type
action union
action find_reverse
entity Q21122871
relation P688
action find_reverse
entity Q23426528
relation P688
type Q863908
{'OR': [[{'concept': 'Q863908'}, 'P688', 'Q21122871'], [{'concept': 'Q863908'}, 'P688', 'Q23426528']]}
SELECT DISTINCT ?v WHERE { { { ?v property:P688 resource:Q21122871 } UNION { ?v property:P688 resource:Q23426528 } } . ?v rdf:type ontology:Q863908 }
phosphatidylserine synthase    YE3248 Probable tRNA (uracil-O(2)-)-methyltransferase
action filter_type
action union
action find_reverse
entity Probable tRNA (uracil-O(2)-)-methyltransferase
relation encodes
action find_reverse
entity phosphatidylserine synthase    YE3248
relation encodes
type nucleic acid sequence
{'OR': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'Probable tRNA (uracil-O(2)-)-methyltransferase'], [{'concept': 'nucleic acid sequence'}, 'encodes', 'phosphatidylserine synthase    YE3248']]}
SELECT DISTINCT ?v WHERE { { { ?v property:encodes resource:Probable_tRNA_(uracil-O(2)-)-methyltransferase } UNION { ?v property:encodes resource:phosphatidylserine_synthase____YE3248 } } . ?v rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23101474 Q18052217
SYSTEM
phosphatidylserine synthase    YE3248, TRMT44
Q23101474 Q18052217
OR((c(Q863908),P688,Q21122871), (c(Q863908),P688,Q23426528))
action filter_type
action union
action find_reverse
entity Q21122871
relation P688
action find_reverse
entity Q23426528
relation P688
type Q863908
[ANSWERS]
{'OR': [[{'concept': 'Q863908'}, 'P688', 'Q21122871'], [{'concept': 'Q863908'}, 'P688', 'Q23426528']]}
SELECT DISTINCT ?v WHERE { { { ?v property:P688 resource:Q21122871 } UNION { ?v property:P688 resource:Q23426528 } } . ?v rdf:type ontology:Q863908 }
phosphatidylserine synthase    YE3248 TRMT44
Phosphatidylserine synthase YE3248 and TRMT44 encode Probable tRNA (uracil-O(2)-)-methyltransferase or phosphatidylserine synthase YE3248
phosphatidylserine synthase    YE3248 TRMT44
action filter_type
action union
action find_reverse
entity Probable tRNA (uracil-O(2)-)-methyltransferase
relation encodes
action find_reverse
entity phosphatidylserine synthase    YE3248
relation encodes
type nucleic acid sequence
{'OR': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'Probable tRNA (uracil-O(2)-)-methyltransferase'], [{'concept': 'nucleic acid sequence'}, 'encodes', 'phosphatidylserine synthase    YE3248']]}
SELECT DISTINCT ?v WHERE { { { ?v property:encodes resource:Probable_tRNA_(uracil-O(2)-)-methyltransferase } UNION { ?v property:encodes resource:phosphatidylserine_synthase____YE3248 } } . ?v rdf:type ontology:nucleic_acid_sequence }
[]
Clarification
Quantitative|Count|Single entity type|Indirect
P688
Q181394
USER
How many nutrients do that nucleic acid sequence encode ?
(Q23101474,P688,c(Q181394))
['Q23101474', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { resource:Q23101474 property:P688 ?z . ?z rdf:type ontology:Q181394 }
['phosphatidylserine synthase    YE3248', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { resource:phosphatidylserine_synthase____YE3248 property:encodes ?z . ?z rdf:type ontology:nutrient }
[]
nutrient
Quantitative|Count|Single entity type|Clarification
Q18052217
SYSTEM
Did you mean TRMT44 ?
(Q23101474,P688,c(Q181394)) (Q18052217,P688,c(Q181394))
[ANSWER]
['Q23101474', 'P688', {'concept': 'Q181394'}] ['Q18052217', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { resource:Q23101474 property:P688 ?z . ?z rdf:type ontology:Q181394 }
Did you mean TRMT44 ?
TRMT44
['phosphatidylserine synthase    YE3248', 'encodes', {'concept': 'nutrient'}] ['TRMT44', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { resource:phosphatidylserine_synthase____YE3248 property:encodes ?z . ?z rdf:type ontology:nutrient }
[]
Quantitative Reasoning (Count) (All)
USER
No, I meant phosphatidylserine synthase    YE3248. Could you tell me the answer for that?
(Q23101474,P688,c(Q181394))
Q23101474
['Q23101474', 'P688', {'concept': 'Q181394'}]
['phosphatidylserine synthase    YE3248', 'encodes', {'concept': 'nutrient'}]
[]
SYSTEM
1
Q23426528
(Q23101474,P688,c(Q181394))
[ANSWER]
['Q23101474', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { resource:Q23101474 property:P688 ?z . ?z rdf:type ontology:Q181394 }
phosphatidylserine synthase    YE3248
1
['phosphatidylserine synthase    YE3248', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { resource:phosphatidylserine_synthase____YE3248 property:encodes ?z . ?z rdf:type ontology:nutrient }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Mult. entity type
Q22289068
P361
Q151885 Q334166 Q2996394
USER
How many biological processes are a portion of greater number of concepts or modes of transport than pole plasm RNA localization ?
(c(Q2996394),P361,c(Q151885)|c(Q334166))
action count
action greater
action union
action find_tuple_counts
relation P361
type Q2996394
type Q151885
action find_tuple_counts
relation P361
type Q2996394
type Q334166
action count
action filter_multi_types
action find
entity Q22289068
relation P361
type Q151885
type Q334166
[{'concept': 'Q2996394'}, 'P361', [{'concept': 'Q151885'}, {'concept': 'Q334166'}]]
SELECT DISTINCT ( COUNT ( ?e ) AS ?z ) WHERE { FILTER ( ?m > ?r ) . { SELECT DISTINCT ( COUNT ( ?x ) AS ?r ) WHERE { resource:Q22289068 property:P361 ?x . { ?x rdf:type ?t . VALUES ( ?t ) { ( ontology:Q151885 ) ( ontology:Q334166 ) } } } } . { SELECT DISTINCT ?e ( COUNT ( ?u ) AS ?m ) WHERE { { ?e property:P361 ?u . ?e rdf:type ontology:Q2996394 . ?u rdf:type ontology:Q334166 } UNION { ?e property:P361 ?u . ?e rdf:type ontology:Q2996394 . ?u rdf:type ontology:Q151885 } } GROUP BY ?e } }
pole plasm RNA localization
action count
action greater
action union
action find_tuple_counts
relation part of
type biological process
type concept
action find_tuple_counts
relation part of
type biological process
type mode of transport
action count
action filter_multi_types
action find
entity pole plasm RNA localization
relation part of
type concept
type mode of transport
[{'concept': 'biological process'}, 'part of', [{'concept': 'concept'}, {'concept': 'mode of transport'}]]
SELECT DISTINCT ( COUNT ( ?e ) AS ?z ) WHERE { FILTER ( ?m > ?r ) . { SELECT DISTINCT ( COUNT ( ?x ) AS ?r ) WHERE { resource:pole_plasm_RNA_localization property:part_of ?x . { ?x rdf:type ?t . VALUES ( ?t ) { ( ontology:concept ) ( ontology:mode_of_transport ) } } } } . { SELECT DISTINCT ?e ( COUNT ( ?u ) AS ?m ) WHERE { { ?e property:part_of ?u . ?e rdf:type ontology:biological_process . ?u rdf:type ontology:mode_of_transport } UNION { ?e property:part_of ?u . ?e rdf:type ontology:biological_process . ?u rdf:type ontology:concept } } GROUP BY ?e } }
[]
concept mode of transport biological process
SYSTEM
7
Q21107328 Q21368803 Q22269731 Q22294880 Q22270384 Q21108839 Q22269699
(c(Q2996394),P361,c(Q151885)|c(Q334166))
action count
action greater
action union
action find_tuple_counts
relation P361
type Q2996394
type Q151885
action find_tuple_counts
relation P361
type Q2996394
type Q334166
action count
action filter_multi_types
action find
entity Q22289068
relation P361
type Q151885
type Q334166
[ANSWER]
[{'concept': 'Q2996394'}, 'P361', [{'concept': 'Q151885'}, {'concept': 'Q334166'}]]
SELECT DISTINCT ( COUNT ( ?e ) AS ?z ) WHERE { FILTER ( ?m > ?r ) . { SELECT DISTINCT ( COUNT ( ?x ) AS ?r ) WHERE { resource:Q22289068 property:P361 ?x . { ?x rdf:type ?t . VALUES ( ?t ) { ( ontology:Q151885 ) ( ontology:Q334166 ) } } } } . { SELECT DISTINCT ?e ( COUNT ( ?u ) AS ?m ) WHERE { { ?e property:P361 ?u . ?e rdf:type ontology:Q2996394 . ?u rdf:type ontology:Q334166 } UNION { ?e property:P361 ?u . ?e rdf:type ontology:Q2996394 . ?u rdf:type ontology:Q151885 } } GROUP BY ?e } }
development involved in symbiotic interaction watercraft rowing movement in environment of other organism involved in symbiotic interaction acquisition of nutrients from other organism during symbiotic interaction dissemination or transmission of organism from other organism involved in symbiotic interaction adhesion of symbiont to host growth involved in symbiotic interaction
7
action count
action greater
action union
action find_tuple_counts
relation part of
type biological process
type concept
action find_tuple_counts
relation part of
type biological process
type mode of transport
action count
action filter_multi_types
action find
entity pole plasm RNA localization
relation part of
type concept
type mode of transport
[{'concept': 'biological process'}, 'part of', [{'concept': 'concept'}, {'concept': 'mode of transport'}]]
SELECT DISTINCT ( COUNT ( ?e ) AS ?z ) WHERE { FILTER ( ?m > ?r ) . { SELECT DISTINCT ( COUNT ( ?x ) AS ?r ) WHERE { resource:pole_plasm_RNA_localization property:part_of ?x . { ?x rdf:type ?t . VALUES ( ?t ) { ( ontology:concept ) ( ontology:mode_of_transport ) } } } } . { SELECT DISTINCT ?e ( COUNT ( ?u ) AS ?m ) WHERE { { ?e property:part_of ?u . ?e rdf:type ontology:biological_process . ?u rdf:type ontology:mode_of_transport } UNION { ?e property:part_of ?u . ?e rdf:type ontology:biological_process . ?u rdf:type ontology:concept } } GROUP BY ?e } }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Mult. entity type|Incomplete
Q21116174
P361
Q151885 Q334166 Q2996394
USER
And how about synaptic vesicle targeting?
(c(Q2996394),P361,c(Q151885)|c(Q334166))
action count
action greater
action union
action find_tuple_counts
relation P361
type Q2996394
type Q151885
action find_tuple_counts
relation P361
type Q2996394
type Q334166
action count
action filter_multi_types
action find
entity Q21116174
relation P361
type Q151885
type Q334166
[{'concept': 'Q2996394'}, 'P361', [{'concept': 'Q151885'}, {'concept': 'Q334166'}]]
SELECT DISTINCT ( COUNT ( ?t ) AS ?e ) WHERE { { SELECT DISTINCT ?t ( COUNT ( ?q ) AS ?p ) WHERE { { ?t rdf:type ontology:Q2996394 . ?q rdf:type ontology:Q151885 . ?t property:P361 ?q } UNION { ?t rdf:type ontology:Q2996394 . ?q rdf:type ontology:Q334166 . ?t property:P361 ?q } } GROUP BY ?t } . { SELECT DISTINCT ( COUNT ( ?c ) AS ?v ) WHERE { resource:Q21116174 property:P361 ?c . { VALUES ( ?k ) { ( ontology:Q151885 ) ( ontology:Q334166 ) } . ?c rdf:type ?k } } } . FILTER ( ?p > ?v ) }
synaptic vesicle targeting
action count
action greater
action union
action find_tuple_counts
relation part of
type biological process
type concept
action find_tuple_counts
relation part of
type biological process
type mode of transport
action count
action filter_multi_types
action find
entity synaptic vesicle targeting
relation part of
type concept
type mode of transport
[{'concept': 'biological process'}, 'part of', [{'concept': 'concept'}, {'concept': 'mode of transport'}]]
SELECT DISTINCT ( COUNT ( ?t ) AS ?e ) WHERE { { SELECT DISTINCT ?t ( COUNT ( ?q ) AS ?p ) WHERE { { ?t rdf:type ontology:biological_process . ?q rdf:type ontology:concept . ?t property:part_of ?q } UNION { ?t rdf:type ontology:biological_process . ?q rdf:type ontology:mode_of_transport . ?t property:part_of ?q } } GROUP BY ?t } . { SELECT DISTINCT ( COUNT ( ?c ) AS ?v ) WHERE { resource:synaptic_vesicle_targeting property:part_of ?c . { VALUES ( ?k ) { ( ontology:concept ) ( ontology:mode_of_transport ) } . ?c rdf:type ?k } } } . FILTER ( ?p > ?v ) }
[]
concept mode of transport biological process
SYSTEM
7
Q21107328 Q21368803 Q22269731 Q22294880 Q22270384 Q21108839 Q22269699
(c(Q2996394),P361,c(Q151885)|c(Q334166))
action count
action greater
action union
action find_tuple_counts
relation P361
type Q2996394
type Q151885
action find_tuple_counts
relation P361
type Q2996394
type Q334166
action count
action filter_multi_types
action find
entity Q21116174
relation P361
type Q151885
type Q334166
[ANSWER]
[{'concept': 'Q2996394'}, 'P361', [{'concept': 'Q151885'}, {'concept': 'Q334166'}]]
SELECT DISTINCT ( COUNT ( ?t ) AS ?e ) WHERE { { SELECT DISTINCT ?t ( COUNT ( ?q ) AS ?p ) WHERE { { ?t rdf:type ontology:Q2996394 . ?q rdf:type ontology:Q151885 . ?t property:P361 ?q } UNION { ?t rdf:type ontology:Q2996394 . ?q rdf:type ontology:Q334166 . ?t property:P361 ?q } } GROUP BY ?t } . { SELECT DISTINCT ( COUNT ( ?c ) AS ?v ) WHERE { resource:Q21116174 property:P361 ?c . { VALUES ( ?k ) { ( ontology:Q151885 ) ( ontology:Q334166 ) } . ?c rdf:type ?k } } } . FILTER ( ?p > ?v ) }
development involved in symbiotic interaction watercraft rowing movement in environment of other organism involved in symbiotic interaction acquisition of nutrients from other organism during symbiotic interaction dissemination or transmission of organism from other organism involved in symbiotic interaction adhesion of symbiont to host growth involved in symbiotic interaction
7
action count
action greater
action union
action find_tuple_counts
relation part of
type biological process
type concept
action find_tuple_counts
relation part of
type biological process
type mode of transport
action count
action filter_multi_types
action find
entity synaptic vesicle targeting
relation part of
type concept
type mode of transport
[{'concept': 'biological process'}, 'part of', [{'concept': 'concept'}, {'concept': 'mode of transport'}]]
SELECT DISTINCT ( COUNT ( ?t ) AS ?e ) WHERE { { SELECT DISTINCT ?t ( COUNT ( ?q ) AS ?p ) WHERE { { ?t rdf:type ontology:biological_process . ?q rdf:type ontology:concept . ?t property:part_of ?q } UNION { ?t rdf:type ontology:biological_process . ?q rdf:type ontology:mode_of_transport . ?t property:part_of ?q } } GROUP BY ?t } . { SELECT DISTINCT ( COUNT ( ?c ) AS ?v ) WHERE { resource:synaptic_vesicle_targeting property:part_of ?c . { VALUES ( ?k ) { ( ontology:concept ) ( ontology:mode_of_transport ) } . ?c rdf:type ?k } } } . FILTER ( ?p > ?v ) }
[]