Simple Question (Direct)
Simple Question
Q21982130
P681
Q15989253
USER
Which are the cell components of E3 ubiquitin-protein ligase RNF130 ?
(Q21982130,P681,c(Q15989253))
action filter_type
action find
entity Q21982130
relation P681
type Q15989253
['Q21982130', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:Q15989253 . resource:Q21982130 property:P681 ?m }
E3 ubiquitin-protein ligase RNF130
action filter_type
action find
entity E3 ubiquitin-protein ligase RNF130
relation cell component
type part
['E3 ubiquitin-protein ligase RNF130', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:part . resource:E3_ubiquitin-protein_ligase_RNF130 property:cell_component ?m }
[]
part
Q79899 Q40260 Q14349455
SYSTEM
cytoplasm, nucleus, membrane
Q79899 Q40260 Q14349455
(Q21982130,P681,c(Q15989253))
action filter_type
action find
entity Q21982130
relation P681
type Q15989253
The cell components of E3 ubiquitin-protein ligase RNF 130 are in [ANSWERS]
['Q21982130', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:Q15989253 . resource:Q21982130 property:P681 ?m }
cytoplasm nucleus membrane
The cell components of E3 ubiquitin-protein ligase RNF 130 are in cytoplasm, nucleus and membrane
cytoplasm nucleus membrane
action filter_type
action find
entity E3 ubiquitin-protein ligase RNF130
relation cell component
type part
['E3 ubiquitin-protein ligase RNF130', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:part . resource:E3_ubiquitin-protein_ligase_RNF130 property:cell_component ?m }
[]
Clarification
Simple Question|Single Entity|Indirect
Q14349455
P361
Q15989253
USER
Which part is a component of that one ?
(c(Q15989253),P361,Q14349455)
action filter_type
action find_reverse
entity Q14349455
relation P361
type Q15989253
[{'concept': 'Q15989253'}, 'P361', 'Q14349455']
SELECT DISTINCT ?p WHERE { ?p property:P361 resource:Q14349455 . ?p rdf:type ontology:Q15989253 }
membrane
action filter_type
action find_reverse
entity membrane
relation part of
type part
[{'concept': 'part'}, 'part of', 'membrane']
SELECT DISTINCT ?p WHERE { ?p property:part_of resource:membrane . ?p rdf:type ontology:part }
[]
part
Clarification for simple ques.
Q79899
SYSTEM
Did you mean cytoplasm ?
Q79899 Q40260 Q14349455
(c(Q15989253),P361,Q79899) (c(Q15989253),P361,Q40260) (c(Q15989253),P361,Q14349455)
[ANSWER]
[{'concept': 'Q15989253'}, 'P361', 'Q79899'] [{'concept': 'Q15989253'}, 'P361', 'Q40260'] [{'concept': 'Q15989253'}, 'P361', 'Q14349455']
SELECT DISTINCT ?p WHERE { ?p property:P361 resource:Q14349455 . ?p rdf:type ontology:Q15989253 }
cytoplasm nucleus membrane
Did you mean cytoplasm ?
cytoplasm
[{'concept': 'part'}, 'part of', 'cytoplasm'] [{'concept': 'part'}, 'part of', 'nucleus'] [{'concept': 'part'}, 'part of', 'membrane']
SELECT DISTINCT ?p WHERE { ?p property:part_of resource:membrane . ?p rdf:type ontology:part }
[]
Simple Question (Coreferenced)
USER
No, I meant membrane. Could you tell me the answer for that?
(c(Q15989253),P361,Q14349455)
Q14349455
[{'concept': 'Q15989253'}, 'P361', 'Q14349455']
[{'concept': 'part'}, 'part of', 'membrane']
[]
Q22327135
SYSTEM
membrane part
Q22327135
(c(Q15989253),P361,Q14349455)
action filter_type
action find_reverse
entity Q14349455
relation P361
type Q15989253
[ANSWER] is a component of that one
[{'concept': 'Q15989253'}, 'P361', 'Q14349455']
SELECT DISTINCT ?p WHERE { ?p property:P361 resource:Q14349455 . ?p rdf:type ontology:Q15989253 }
membrane part
Membrane part is a component of that one
membrane part
action filter_type
action find_reverse
entity membrane
relation part of
type part
[{'concept': 'part'}, 'part of', 'membrane']
SELECT DISTINCT ?p WHERE { ?p property:part_of resource:membrane . ?p rdf:type ontology:part }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23505587 Q21982130
P688
Q863908
USER
Which nucleic acid sequences encode E3 ubiquitin-protein ligase RNF130 or glutamine--scyllo-inositol transaminase    HMPREF0351_10919 ?
OR((c(Q863908),P688,Q21982130), (c(Q863908),P688,Q23505587))
action filter_type
action union
action find_reverse
entity Q21982130
relation P688
action find_reverse
entity Q23505587
relation P688
type Q863908
{'OR': [[{'concept': 'Q863908'}, 'P688', 'Q21982130'], [{'concept': 'Q863908'}, 'P688', 'Q23505587']]}
SELECT DISTINCT ?c WHERE { { { ?c property:P688 resource:Q21982130 } UNION { ?c property:P688 resource:Q23505587 } } . ?c rdf:type ontology:Q863908 }
glutamine--scyllo-inositol transaminase    HMPREF0351_10919 E3 ubiquitin-protein ligase RNF130
action filter_type
action union
action find_reverse
entity E3 ubiquitin-protein ligase RNF130
relation encodes
action find_reverse
entity glutamine--scyllo-inositol transaminase    HMPREF0351_10919
relation encodes
type nucleic acid sequence
{'OR': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'E3 ubiquitin-protein ligase RNF130'], [{'concept': 'nucleic acid sequence'}, 'encodes', 'glutamine--scyllo-inositol transaminase    HMPREF0351_10919']]}
SELECT DISTINCT ?c WHERE { { { ?c property:encodes resource:E3_ubiquitin-protein_ligase_RNF130 } UNION { ?c property:encodes resource:glutamine--scyllo-inositol_transaminase____HMPREF0351_10919 } } . ?c rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18258963 Q23183257
SYSTEM
Rnf130, glutamine--scyllo-inositol transaminase    HMPREF0351_10919
Q18258963 Q23183257
OR((c(Q863908),P688,Q21982130), (c(Q863908),P688,Q23505587))
action filter_type
action union
action find_reverse
entity Q21982130
relation P688
action find_reverse
entity Q23505587
relation P688
type Q863908
[ANSWERS]
{'OR': [[{'concept': 'Q863908'}, 'P688', 'Q21982130'], [{'concept': 'Q863908'}, 'P688', 'Q23505587']]}
SELECT DISTINCT ?c WHERE { { { ?c property:P688 resource:Q21982130 } UNION { ?c property:P688 resource:Q23505587 } } . ?c rdf:type ontology:Q863908 }
Rnf130 glutamine--scyllo-inositol transaminase    HMPREF0351_10919
Rnf130 and glutamine--scyllo-inositol transaminase HMPREF0351 10919 encode E3 ubiquitin-protein ligase RNF130 or glutamine--scyllo-inositol transaminase HMPREF0351_10919
Rnf130 glutamine--scyllo-inositol transaminase    HMPREF0351_10919
action filter_type
action union
action find_reverse
entity E3 ubiquitin-protein ligase RNF130
relation encodes
action find_reverse
entity glutamine--scyllo-inositol transaminase    HMPREF0351_10919
relation encodes
type nucleic acid sequence
{'OR': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'E3 ubiquitin-protein ligase RNF130'], [{'concept': 'nucleic acid sequence'}, 'encodes', 'glutamine--scyllo-inositol transaminase    HMPREF0351_10919']]}
SELECT DISTINCT ?c WHERE { { { ?c property:encodes resource:E3_ubiquitin-protein_ligase_RNF130 } UNION { ?c property:encodes resource:glutamine--scyllo-inositol_transaminase____HMPREF0351_10919 } } . ?c rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q18258963
P684
Q863908
USER
What is the name of the species that has Rnf130 as its orthologous gene ?
(c(Q863908),P684,Q18258963)
action filter_type
action find
entity Q18258963
relation P684
type Q863908
[{'concept': 'Q863908'}, 'P684', 'Q18258963']
SELECT DISTINCT ?y WHERE { resource:Q18258963 property:P684 ?y . ?y rdf:type ontology:Q863908 }
Rnf130
action filter_type
action find
entity Rnf130
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'Rnf130']
SELECT DISTINCT ?y WHERE { resource:Rnf130 property:ortholog ?y . ?y rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18042081
SYSTEM
RNF130
Q18042081
(c(Q863908),P684,Q18258963)
action filter_type
action find
entity Q18258963
relation P684
type Q863908
The name of the species that has Rnf130 as its orthologous gene is [ANSWER]
[{'concept': 'Q863908'}, 'P684', 'Q18258963']
SELECT DISTINCT ?y WHERE { resource:Q18258963 property:P684 ?y . ?y rdf:type ontology:Q863908 }
RNF130
The name of the species that has Rnf130 as its orthologous gene is RNF130
RNF130
action filter_type
action find
entity Rnf130
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'Rnf130']
SELECT DISTINCT ?y WHERE { resource:Rnf130 property:ortholog ?y . ?y rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18042081
P2293
Q2057971
USER
Which health problem has genetic connection with that nucleic acid sequence ?
(Q18042081,P2293,c(Q2057971))
action filter_type
action find
entity Q18042081
relation P2293
type Q2057971
['Q18042081', 'P2293', {'concept': 'Q2057971'}]
SELECT DISTINCT ?q WHERE { resource:Q18042081 property:P2293 ?q . ?q rdf:type ontology:Q2057971 }
RNF130
action filter_type
action find
entity RNF130
relation genetic association
type health problem
['RNF130', 'genetic association', {'concept': 'health problem'}]
SELECT DISTINCT ?q WHERE { resource:RNF130 property:genetic_association ?q . ?q rdf:type ontology:health_problem }
[]
health problem
Q844935
SYSTEM
coronary artery disease
Q844935
(Q18042081,P2293,c(Q2057971))
action filter_type
action find
entity Q18042081
relation P2293
type Q2057971
[ANSWER] has genetic connection with that nucleic acid sequence
['Q18042081', 'P2293', {'concept': 'Q2057971'}]
SELECT DISTINCT ?q WHERE { resource:Q18042081 property:P2293 ?q . ?q rdf:type ontology:Q2057971 }
coronary artery disease
Coronary artery disease has genetic connection with that nucleic acid sequence
coronary artery disease
action filter_type
action find
entity RNF130
relation genetic association
type health problem
['RNF130', 'genetic association', {'concept': 'health problem'}]
SELECT DISTINCT ?q WHERE { resource:RNF130 property:genetic_association ?q . ?q rdf:type ontology:health_problem }
[]
Verification (Boolean) (All)
Verification|3 entities, 2 direct, 2(direct) are query entities, subject is indirect
Q844935 Q258591 Q348922
P2176
Q8386
USER
Is that health problem cured by cilostazol and busulfan ?
(Q844935,P2176,Q258591) (Q844935,P2176,Q348922)
action is_in
entity Q844935
action intersection
action find_reverse
entity Q258591
relation P2176
action find_reverse
entity Q348922
relation P2176
['Q844935', 'P2176', 'Q258591'] ['Q844935', 'P2176', 'Q348922']
ASK WHERE { resource:Q844935 property:P2176 resource:Q258591 . resource:Q844935 property:P2176 resource:Q348922 }
coronary artery disease cilostazol busulfan
action is_in
entity coronary artery disease
action intersection
action find_reverse
entity cilostazol
relation drug used for treatment
action find_reverse
entity busulfan
relation drug used for treatment
['coronary artery disease', 'drug used for treatment', 'cilostazol'] ['coronary artery disease', 'drug used for treatment', 'busulfan']
ASK WHERE { resource:coronary_artery_disease property:drug_used_for_treatment resource:cilostazol . resource:coronary_artery_disease property:drug_used_for_treatment resource:busulfan }
[]
drug
SYSTEM
YES and NO respectively
(Q844935,P2176,Q258591) (Q844935,P2176,Q348922)
action is_in
entity Q844935
action intersection
action find_reverse
entity Q258591
relation P2176
action find_reverse
entity Q348922
relation P2176
[ANSWER]
['Q844935', 'P2176', 'Q258591'] ['Q844935', 'P2176', 'Q348922']
ASK WHERE { resource:Q844935 property:P2176 resource:Q258591 . resource:Q844935 property:P2176 resource:Q348922 }
YES and NO respectively
action is_in
entity coronary artery disease
action intersection
action find_reverse
entity cilostazol
relation drug used for treatment
action find_reverse
entity busulfan
relation drug used for treatment
['coronary artery disease', 'drug used for treatment', 'cilostazol'] ['coronary artery disease', 'drug used for treatment', 'busulfan']
ASK WHERE { resource:coronary_artery_disease property:drug_used_for_treatment resource:cilostazol . resource:coronary_artery_disease property:drug_used_for_treatment resource:busulfan }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Single entity type
Q609621
P828
Q223557 Q2057971
USER
How many physical objects leads to approximately the same number of health problems as MAPP gas ?
(c(Q2057971),P828,c(Q223557))
action count
action approx
action find_reverse_tuple_counts
relation P828
type Q223557
type Q2057971
action count
action filter_type
action find
entity Q609621
relation P828
type Q223557
[{'concept': 'Q2057971'}, 'P828', {'concept': 'Q223557'}]
SELECT DISTINCT ( COUNT ( ?o ) AS ?d ) WHERE { { SELECT DISTINCT ?o ( COUNT ( ?s ) AS ?i ) WHERE { ?s property:P828 ?o . ?o rdf:type ontology:Q223557 . ?s rdf:type ontology:Q2057971 } GROUP BY ?o } . { SELECT DISTINCT ( COUNT ( ?t ) AS ?v ) WHERE { ?t rdf:type ontology:Q223557 . resource:Q609621 property:P828 ?t } } . FILTER ( ?i = ?v ) }
MAPP gas
action count
action approx
action find_reverse_tuple_counts
relation has cause
type physical object
type health problem
action count
action filter_type
action find
entity MAPP gas
relation has cause
type physical object
[{'concept': 'health problem'}, 'has cause', {'concept': 'physical object'}]
SELECT DISTINCT ( COUNT ( ?o ) AS ?d ) WHERE { { SELECT DISTINCT ?o ( COUNT ( ?s ) AS ?i ) WHERE { ?s property:has_cause ?o . ?o rdf:type ontology:physical_object . ?s rdf:type ontology:health_problem } GROUP BY ?o } . { SELECT DISTINCT ( COUNT ( ?t ) AS ?v ) WHERE { ?t rdf:type ontology:physical_object . resource:MAPP_gas property:has_cause ?t } } . FILTER ( ?i = ?v ) }
[]
physical object health problem
SYSTEM
7
Q609621 Q21058099 Q2362625 Q202251 Q21057847 Q20966458 Q130768
(c(Q2057971),P828,c(Q223557))
action count
action approx
action find_reverse_tuple_counts
relation P828
type Q223557
type Q2057971
action count
action filter_type
action find
entity Q609621
relation P828
type Q223557
[ANSWER]
[{'concept': 'Q2057971'}, 'P828', {'concept': 'Q223557'}]
SELECT DISTINCT ( COUNT ( ?o ) AS ?d ) WHERE { { SELECT DISTINCT ?o ( COUNT ( ?s ) AS ?i ) WHERE { ?s property:P828 ?o . ?o rdf:type ontology:Q223557 . ?s rdf:type ontology:Q2057971 } GROUP BY ?o } . { SELECT DISTINCT ( COUNT ( ?t ) AS ?v ) WHERE { ?t rdf:type ontology:Q223557 . resource:Q609621 property:P828 ?t } } . FILTER ( ?i = ?v ) }
MAPP gas polychlorinated biphenyl with 54% chlorine formalin asphalt polychlorinated biphenyl with 42% chlorine Niax Catalyst ESN smoke
7
action count
action approx
action find_reverse_tuple_counts
relation has cause
type physical object
type health problem
action count
action filter_type
action find
entity MAPP gas
relation has cause
type physical object
[{'concept': 'health problem'}, 'has cause', {'concept': 'physical object'}]
SELECT DISTINCT ( COUNT ( ?o ) AS ?d ) WHERE { { SELECT DISTINCT ?o ( COUNT ( ?s ) AS ?i ) WHERE { ?s property:has_cause ?o . ?o rdf:type ontology:physical_object . ?s rdf:type ontology:health_problem } GROUP BY ?o } . { SELECT DISTINCT ( COUNT ( ?t ) AS ?v ) WHERE { ?t rdf:type ontology:physical_object . resource:MAPP_gas property:has_cause ?t } } . FILTER ( ?i = ?v ) }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Single entity type|Incomplete
Q21057847
P828
Q223557 Q2057971
USER
And also tell me about polychlorinated biphenyl with 42% chlorine?
(c(Q2057971),P828,c(Q223557))
action count
action approx
action find_reverse_tuple_counts
relation P828
type Q223557
type Q2057971
action count
action filter_type
action find
entity Q21057847
relation P828
type Q223557
[{'concept': 'Q2057971'}, 'P828', {'concept': 'Q223557'}]
SELECT DISTINCT ( COUNT ( ?c ) AS ?f ) WHERE { FILTER ( ?k = ?i ) . { SELECT DISTINCT ( COUNT ( ?w ) AS ?i ) WHERE { ?w rdf:type ontology:Q223557 . resource:Q21057847 property:P828 ?w } } . { SELECT DISTINCT ?c ( COUNT ( ?u ) AS ?k ) WHERE { ?u property:P828 ?c . ?c rdf:type ontology:Q223557 . ?u rdf:type ontology:Q2057971 } GROUP BY ?c } }
polychlorinated biphenyl with 42% chlorine
action count
action approx
action find_reverse_tuple_counts
relation has cause
type physical object
type health problem
action count
action filter_type
action find
entity polychlorinated biphenyl with 42% chlorine
relation has cause
type physical object
[{'concept': 'health problem'}, 'has cause', {'concept': 'physical object'}]
SELECT DISTINCT ( COUNT ( ?c ) AS ?f ) WHERE { FILTER ( ?k = ?i ) . { SELECT DISTINCT ( COUNT ( ?w ) AS ?i ) WHERE { ?w rdf:type ontology:physical_object . resource:polychlorinated_biphenyl_with_42%_chlorine property:has_cause ?w } } . { SELECT DISTINCT ?c ( COUNT ( ?u ) AS ?k ) WHERE { ?u property:has_cause ?c . ?c rdf:type ontology:physical_object . ?u rdf:type ontology:health_problem } GROUP BY ?c } }
[]
physical object health problem
SYSTEM
7
Q609621 Q21058099 Q2362625 Q202251 Q21057847 Q20966458 Q130768
(c(Q2057971),P828,c(Q223557))
action count
action approx
action find_reverse_tuple_counts
relation P828
type Q223557
type Q2057971
action count
action filter_type
action find
entity Q21057847
relation P828
type Q223557
[ANSWER]
[{'concept': 'Q2057971'}, 'P828', {'concept': 'Q223557'}]
SELECT DISTINCT ( COUNT ( ?c ) AS ?f ) WHERE { FILTER ( ?k = ?i ) . { SELECT DISTINCT ( COUNT ( ?w ) AS ?i ) WHERE { ?w rdf:type ontology:Q223557 . resource:Q21057847 property:P828 ?w } } . { SELECT DISTINCT ?c ( COUNT ( ?u ) AS ?k ) WHERE { ?u property:P828 ?c . ?c rdf:type ontology:Q223557 . ?u rdf:type ontology:Q2057971 } GROUP BY ?c } }
MAPP gas polychlorinated biphenyl with 54% chlorine formalin asphalt polychlorinated biphenyl with 42% chlorine Niax Catalyst ESN smoke
7
action count
action approx
action find_reverse_tuple_counts
relation has cause
type physical object
type health problem
action count
action filter_type
action find
entity polychlorinated biphenyl with 42% chlorine
relation has cause
type physical object
[{'concept': 'health problem'}, 'has cause', {'concept': 'physical object'}]
SELECT DISTINCT ( COUNT ( ?c ) AS ?f ) WHERE { FILTER ( ?k = ?i ) . { SELECT DISTINCT ( COUNT ( ?w ) AS ?i ) WHERE { ?w rdf:type ontology:physical_object . resource:polychlorinated_biphenyl_with_42%_chlorine property:has_cause ?w } } . { SELECT DISTINCT ?c ( COUNT ( ?u ) AS ?k ) WHERE { ?u property:has_cause ?c . ?c rdf:type ontology:physical_object . ?u rdf:type ontology:health_problem } GROUP BY ?c } }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q844935
P689
Q988343
USER
What is afflicted by coronary artery disease ?
(Q844935,P689,c(Q988343))
action filter_type
action find
entity Q844935
relation P689
type Q988343
['Q844935', 'P689', {'concept': 'Q988343'}]
SELECT DISTINCT ?n WHERE { resource:Q844935 property:P689 ?n . ?n rdf:type ontology:Q988343 }
coronary artery disease
action filter_type
action find
entity coronary artery disease
relation afflicts
type blood vessel
['coronary artery disease', 'afflicts', {'concept': 'blood vessel'}]
SELECT DISTINCT ?n WHERE { resource:coronary_artery_disease property:afflicts ?n . ?n rdf:type ontology:blood_vessel }
[]
blood vessel
Q18361829
SYSTEM
coronary artery
Q18361829
(Q844935,P689,c(Q988343))
action filter_type
action find
entity Q844935
relation P689
type Q988343
Disease [ANSWER] is afflicted by [ANSWER] disease
['Q844935', 'P689', {'concept': 'Q988343'}]
SELECT DISTINCT ?n WHERE { resource:Q844935 property:P689 ?n . ?n rdf:type ontology:Q988343 }
coronary artery
Disease coronary artery is afflicted by coronary artery disease
coronary artery
action filter_type
action find
entity coronary artery disease
relation afflicts
type blood vessel
['coronary artery disease', 'afflicts', {'concept': 'blood vessel'}]
SELECT DISTINCT ?n WHERE { resource:coronary_artery_disease property:afflicts ?n . ?n rdf:type ontology:blood_vessel }
[]