Simple Question (Direct)
Simple Question
Q21992496
P682
Q2996394
USER
What are the biological processes that Heat shock protein 75 kDa, mitochondrial are involved in ?
(Q21992496,P682,c(Q2996394))
action filter_type
action find
entity Q21992496
relation P682
type Q2996394
['Q21992496', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?b WHERE { resource:Q21992496 property:P682 ?b . ?b rdf:type ontology:Q2996394 }
Heat shock protein 75 kDa, mitochondrial
action filter_type
action find
entity Heat shock protein 75 kDa, mitochondrial
relation biological process
type biological process
['Heat shock protein 75 kDa, mitochondrial', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?b WHERE { resource:Heat_shock_protein_75_kDa,_mitochondrial property:biological_process ?b . ?b rdf:type ontology:biological_process }
[]
biological process
Q14819911 Q847556
SYSTEM
response to stress, protein folding
Q14819911 Q847556
(Q21992496,P682,c(Q2996394))
action filter_type
action find
entity Q21992496
relation P682
type Q2996394
The biological processes that Heat shock protein 75 kDa , mitochondrial are involved in are immune [ANSWERS]
['Q21992496', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?b WHERE { resource:Q21992496 property:P682 ?b . ?b rdf:type ontology:Q2996394 }
response to stress protein folding
The biological processes that Heat shock protein 75 kDa , mitochondrial are involved in are immune response to stress and protein folding
response to stress protein folding
action filter_type
action find
entity Heat shock protein 75 kDa, mitochondrial
relation biological process
type biological process
['Heat shock protein 75 kDa, mitochondrial', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?b WHERE { resource:Heat_shock_protein_75_kDa,_mitochondrial property:biological_process ?b . ?b rdf:type ontology:biological_process }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21992496
P702
Q863908
USER
What is the gene that encodes that nutrient ?
(Q14819911,P702,c(Q863908)) (Q847556,P702,c(Q863908))
action filter_type
action find
entity Q21992496
relation P702
type Q863908
['Q14819911', 'P702', {'concept': 'Q863908'}] ['Q847556', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?k WHERE { resource:Q21992496 property:P702 ?k . ?k rdf:type ontology:Q863908 }
Heat shock protein 75 kDa, mitochondrial
action filter_type
action find
entity Heat shock protein 75 kDa, mitochondrial
relation encoded by
type nucleic acid sequence
['response to stress', 'encoded by', {'concept': 'nucleic acid sequence'}] ['protein folding', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?k WHERE { resource:Heat_shock_protein_75_kDa,_mitochondrial property:encoded_by ?k . ?k rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18262938
SYSTEM
Trap1
Q18262938
(Q14819911,P702,c(Q863908)) (Q847556,P702,c(Q863908))
action filter_type
action find
entity Q21992496
relation P702
type Q863908
The gene that encodes that nutrient is strong [ANSWER]
['Q14819911', 'P702', {'concept': 'Q863908'}] ['Q847556', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?k WHERE { resource:Q21992496 property:P702 ?k . ?k rdf:type ontology:Q863908 }
Trap1
The gene that encodes that nutrient is strong Trap1
Trap1
action filter_type
action find
entity Heat shock protein 75 kDa, mitochondrial
relation encoded by
type nucleic acid sequence
['response to stress', 'encoded by', {'concept': 'nucleic acid sequence'}] ['protein folding', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?k WHERE { resource:Heat_shock_protein_75_kDa,_mitochondrial property:encoded_by ?k . ?k rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, subject is indirect
Q18262938 Q21992496
P688
Q181394
USER
Is that nucleic acid sequence an encoding of Heat shock protein 75 kDa, mitochondrial ?
(Q18262938,P688,Q21992496)
action is_in
entity Q21992496
action find
entity Q18262938
relation P688
['Q18262938', 'P688', 'Q21992496']
ASK WHERE { resource:Q18262938 property:P688 resource:Q21992496 }
Trap1 Heat shock protein 75 kDa, mitochondrial
action is_in
entity Heat shock protein 75 kDa, mitochondrial
action find
entity Trap1
relation encodes
['Trap1', 'encodes', 'Heat shock protein 75 kDa, mitochondrial']
ASK WHERE { resource:Trap1 property:encodes resource:Heat_shock_protein_75_kDa,_mitochondrial }
[]
nutrient
SYSTEM
YES
(Q18262938,P688,Q21992496)
action is_in
entity Q21992496
action find
entity Q18262938
relation P688
[ANSWER]
['Q18262938', 'P688', 'Q21992496']
ASK WHERE { resource:Q18262938 property:P688 resource:Q21992496 }
Yes
action is_in
entity Heat shock protein 75 kDa, mitochondrial
action find
entity Trap1
relation encodes
['Trap1', 'encodes', 'Heat shock protein 75 kDa, mitochondrial']
ASK WHERE { resource:Trap1 property:encodes resource:Heat_shock_protein_75_kDa,_mitochondrial }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q27549576 Q21992496
P681
Q15989253
USER
Which parts are the cell components of Heat shock protein 75 kDa, mitochondrial or Per33p YLR064W ?
OR((Q21992496,P681,c(Q15989253)), (Q27549576,P681,c(Q15989253)))
action filter_type
action union
action find
entity Q21992496
relation P681
action find
entity Q27549576
relation P681
type Q15989253
{'OR': [['Q21992496', 'P681', {'concept': 'Q15989253'}], ['Q27549576', 'P681', {'concept': 'Q15989253'}]]}
SELECT DISTINCT ?d WHERE { { { resource:Q21992496 property:P681 ?d } UNION { resource:Q27549576 property:P681 ?d } } . ?d rdf:type ontology:Q15989253 }
Per33p YLR064W Heat shock protein 75 kDa, mitochondrial
action filter_type
action union
action find
entity Heat shock protein 75 kDa, mitochondrial
relation cell component
action find
entity Per33p YLR064W
relation cell component
type part
{'OR': [['Heat shock protein 75 kDa, mitochondrial', 'cell component', {'concept': 'part'}], ['Per33p YLR064W', 'cell component', {'concept': 'part'}]]}
SELECT DISTINCT ?d WHERE { { { resource:Heat_shock_protein_75_kDa,_mitochondrial property:cell_component ?d } UNION { resource:Per33p_YLR064W property:cell_component ?d } } . ?d rdf:type ontology:part }
[]
part
Q39572 Q40260 Q14349455
SYSTEM
mitochondrion, nucleus, membrane
Q39572 Q40260 Q14349455
OR((Q21992496,P681,c(Q15989253)), (Q27549576,P681,c(Q15989253)))
action filter_type
action union
action find
entity Q21992496
relation P681
action find
entity Q27549576
relation P681
type Q15989253
[ANSWERS] are the cell components of Heat shock protein 75 kDa, mitochondrial or Per33p YLR064W
{'OR': [['Q21992496', 'P681', {'concept': 'Q15989253'}], ['Q27549576', 'P681', {'concept': 'Q15989253'}]]}
SELECT DISTINCT ?d WHERE { { { resource:Q21992496 property:P681 ?d } UNION { resource:Q27549576 property:P681 ?d } } . ?d rdf:type ontology:Q15989253 }
mitochondrion nucleus membrane
Mitochondrion, nucleus and membrane are the cell components of Heat shock protein 75 kDa, mitochondrial or Per33p YLR064W
mitochondrion nucleus membrane
action filter_type
action union
action find
entity Heat shock protein 75 kDa, mitochondrial
relation cell component
action find
entity Per33p YLR064W
relation cell component
type part
{'OR': [['Heat shock protein 75 kDa, mitochondrial', 'cell component', {'concept': 'part'}], ['Per33p YLR064W', 'cell component', {'concept': 'part'}]]}
SELECT DISTINCT ?d WHERE { { { resource:Heat_shock_protein_75_kDa,_mitochondrial property:cell_component ?d } UNION { resource:Per33p_YLR064W property:cell_component ?d } } . ?d rdf:type ontology:part }
[]
Verification (Boolean) (All)
Verification|one entity, multiple entities (as object) referred indirectly
Q408476
P681
Q181394
USER
Are those parts a cell component of Apoptosis regulator BAX ?
(Q408476,P681,Q39572) (Q408476,P681,Q40260) (Q408476,P681,Q14349455)
action is_in
entity prev_answer
action find
entity Q408476
relation P681
['Q408476', 'P681', 'Q39572'] ['Q408476', 'P681', 'Q40260'] ['Q408476', 'P681', 'Q14349455']
ASK WHERE { VALUES ( ?o ) { ( resource:Q39572 ) ( resource:Q40260 ) ( resource:Q14349455 ) } . resource:Q408476 property:P681 ?o }
Apoptosis regulator BAX
action is_in
entity prev_answer
action find
entity Apoptosis regulator BAX
relation cell component
['Apoptosis regulator BAX', 'cell component', 'mitochondrion'] ['Apoptosis regulator BAX', 'cell component', 'nucleus'] ['Apoptosis regulator BAX', 'cell component', 'membrane']
ASK WHERE { VALUES ( ?o ) { ( resource:mitochondrion ) ( resource:nucleus ) ( resource:membrane ) } . resource:Apoptosis_regulator_BAX property:cell_component ?o }
[]
nutrient
SYSTEM
YES
(Q408476,P681,Q39572) (Q408476,P681,Q40260) (Q408476,P681,Q14349455)
action is_in
entity prev_answer
action find
entity Q408476
relation P681
[ANSWER]
['Q408476', 'P681', 'Q39572'] ['Q408476', 'P681', 'Q40260'] ['Q408476', 'P681', 'Q14349455']
ASK WHERE { VALUES ( ?o ) { ( resource:Q39572 ) ( resource:Q40260 ) ( resource:Q14349455 ) } . resource:Q408476 property:P681 ?o }
Yes
action is_in
entity prev_answer
action find
entity Apoptosis regulator BAX
relation cell component
['Apoptosis regulator BAX', 'cell component', 'mitochondrion'] ['Apoptosis regulator BAX', 'cell component', 'nucleus'] ['Apoptosis regulator BAX', 'cell component', 'membrane']
ASK WHERE { VALUES ( ?o ) { ( resource:mitochondrion ) ( resource:nucleus ) ( resource:membrane ) } . resource:Apoptosis_regulator_BAX property:cell_component ?o }
[]
Comparative Reasoning (All)
Comparative|More/Less|Single entity type
Q899827
P361
Q5058355 Q15989253
USER
Which cellular components are less number of parts a portion of than endomembrane system ?
(c(Q15989253),P361,c(Q5058355))
action less
action find_reverse_tuple_counts
relation P361
type Q5058355
type Q15989253
action count
action filter_type
action find_reverse
entity Q899827
relation P361
type Q5058355
[{'concept': 'Q15989253'}, 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ?x WHERE { { SELECT DISTINCT ?x ( COUNT ( ?c ) AS ?w ) WHERE { ?c property:P361 ?x . ?x rdf:type ontology:Q5058355 . ?c rdf:type ontology:Q15989253 } GROUP BY ?x } . FILTER ( ?w < ?k ) . { SELECT DISTINCT ( COUNT ( ?u ) AS ?k ) WHERE { ?u property:P361 resource:Q899827 . ?u rdf:type ontology:Q5058355 } } }
endomembrane system
action less
action find_reverse_tuple_counts
relation part of
type cellular component
type part
action count
action filter_type
action find_reverse
entity endomembrane system
relation part of
type cellular component
[{'concept': 'part'}, 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ?x WHERE { { SELECT DISTINCT ?x ( COUNT ( ?c ) AS ?w ) WHERE { ?c property:part_of ?x . ?x rdf:type ontology:cellular_component . ?c rdf:type ontology:part } GROUP BY ?x } . FILTER ( ?w < ?k ) . { SELECT DISTINCT ( COUNT ( ?u ) AS ?k ) WHERE { ?u property:part_of resource:endomembrane_system . ?u rdf:type ontology:cellular_component } } }
[]
cellular component part
Q29548 Q14912978 Q22329159
SYSTEM
plasma membrane, mitochondrial nucleoid, ventral disc microtubule array
Q22329450 Q21106124 Q15320191 Q14912978 Q14864171 Q14876131 Q14878067 Q1604780 Q22327994 Q22327622 Q14860843 Q22327479 Q22327686 Q22327683 Q22330482 Q671136 Q22326188 Q22330431 Q189094 Q24576572 Q3824358 Q22329021 Q14864391 Q14864390 Q22328085 Q21095183 Q14329032 Q14905221 Q21199358 Q22327411 Q22327418 Q22329159 Q21109092 Q22329397 Q14864382 Q14353100 Q22327884 Q22329851 Q14863372 Q21423046 Q47263 Q22327652 Q22329848 Q180436 Q22329162 Q22329846 Q22329160 Q24570682 Q22330051 Q22327498 Q14911512 Q14819352 Q22327494 Q22327889 Q14762605 Q14864266 Q21750262 Q21198990 Q776995 Q22329401 Q24570673 Q14349538 Q22328884 Q22329076 Q22330231 Q5419646 Q21126899 Q22325459 Q2914458 Q22327714 Q22327805 Q21107481 Q22327505 Q21102478 Q22327502 Q22327500 Q138639 Q22329104 Q21095308 Q14864857 Q1065756 Q79927 Q180951 Q22327475 Q14864520 Q29548 Q22328105 Q14860546 Q14860540 Q14864866 Q6414172 Q193825
(c(Q15989253),P361,c(Q5058355))
action less
action find_reverse_tuple_counts
relation P361
type Q5058355
type Q15989253
action count
action filter_type
action find_reverse
entity Q899827
relation P361
type Q5058355
The [ANSWERS] are less number of parts a portion of than endomembrane system
[{'concept': 'Q15989253'}, 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ?x WHERE { { SELECT DISTINCT ?x ( COUNT ( ?c ) AS ?w ) WHERE { ?c property:P361 ?x . ?x rdf:type ontology:Q5058355 . ?c rdf:type ontology:Q15989253 } GROUP BY ?x } . FILTER ( ?w < ?k ) . { SELECT DISTINCT ( COUNT ( ?u ) AS ?k ) WHERE { ?u property:P361 resource:Q899827 . ?u rdf:type ontology:Q5058355 } } }
lateral part of cell viral capsid synaptic cleft mitochondrial nucleoid cell periphery compact myelin organelle membrane hemidesmosome rhoptry side of membrane nuclear outer membrane presynapse prospore membrane eisosome ventral disc supernumerary microtubule array synaptic vesicle aster unencapsulated part of cell cell surface presynaptic endosome membrane intracellular apical complex intracellular organelle synaptic vesicle membrane external encapsulating structure dendritic spine head endoplasmic reticulum membrane symbiont-containing vacuole membrane bacterial nucleoid extracellular space of host host ventral disc microtubule array nuclear outer membrane-endoplasmic reticulum membrane network cluster of actin-based cell projections presynaptic active zone cell projection cellular bud virus tail myelin sheath membrane-bounded organelle chloroplast whole membrane icosahedral viral capsid, collar cilium ventral disc icosahedral viral capsid, neck ventral disc overlap zone spine apparatus membrane dinoflagellate hypocone postsynaptic endocytic zone stereocilium respiratory chain postsynaptic endosome cell trailing edge midbody cell-substrate junction cell division site periplasmic space neuromuscular junction pellicle postsynaptic endosome membrane apical part of cell organellar ribosome plastid nucleoid dinoflagellate epicone excitatory synapse cell tip sperm individualization complex extracellular space coated membrane photosynthetic membrane site of polarized growth presynaptic endosome other organism cell presynaptic active zone cytoplasmic component presynaptic endocytic zone peroxisome germ tube retromer complex cell leading edge melanosome endoplasmic reticulum chromatin postsynapse extrinsic component of membrane plasma membrane cell septum basal part of cell clathrin-coated pit cell body kinocilium extracellular matrix
The plasma membrane, mitochondrial nucleoid and ventral disc microtubule array are less number of parts a portion of than endomembrane system
plasma membrane mitochondrial nucleoid ventral disc microtubule array
action less
action find_reverse_tuple_counts
relation part of
type cellular component
type part
action count
action filter_type
action find_reverse
entity endomembrane system
relation part of
type cellular component
[{'concept': 'part'}, 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ?x WHERE { { SELECT DISTINCT ?x ( COUNT ( ?c ) AS ?w ) WHERE { ?c property:part_of ?x . ?x rdf:type ontology:cellular_component . ?c rdf:type ontology:part } GROUP BY ?x } . FILTER ( ?w < ?k ) . { SELECT DISTINCT ( COUNT ( ?u ) AS ?k ) WHERE { ?u property:part_of resource:endomembrane_system . ?u rdf:type ontology:cellular_component } } }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q39572
P138
Q1348351
USER
Which mode of inheritance has mitochondrion as its namesake ?
(c(Q1348351),P138,Q39572)
action filter_type
action find_reverse
entity Q39572
relation P138
type Q1348351
[{'concept': 'Q1348351'}, 'P138', 'Q39572']
SELECT DISTINCT ?x WHERE { ?x property:P138 resource:Q39572 . ?x rdf:type ontology:Q1348351 }
mitochondrion
action filter_type
action find_reverse
entity mitochondrion
relation named after
type mode of inheritance
[{'concept': 'mode of inheritance'}, 'named after', 'mitochondrion']
SELECT DISTINCT ?x WHERE { ?x property:named_after resource:mitochondrion . ?x rdf:type ontology:mode_of_inheritance }
[]
mode of inheritance
Q15729075
SYSTEM
mitochondrial
Q15729075
(c(Q1348351),P138,Q39572)
action filter_type
action find_reverse
entity Q39572
relation P138
type Q1348351
DNA [ANSWER] has mitochondrion as its namesake
[{'concept': 'Q1348351'}, 'P138', 'Q39572']
SELECT DISTINCT ?x WHERE { ?x property:P138 resource:Q39572 . ?x rdf:type ontology:Q1348351 }
mitochondrial
DNA mitochondrial has mitochondrion as its namesake
mitochondrial
action filter_type
action find_reverse
entity mitochondrion
relation named after
type mode of inheritance
[{'concept': 'mode of inheritance'}, 'named after', 'mitochondrion']
SELECT DISTINCT ?x WHERE { ?x property:named_after resource:mitochondrion . ?x rdf:type ontology:mode_of_inheritance }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q18262938
P684
Q863908
USER
Which nucleic acid sequence is Trap1 an orthlogous gene of ?
(c(Q863908),P684,Q18262938)
action filter_type
action find
entity Q18262938
relation P684
type Q863908
[{'concept': 'Q863908'}, 'P684', 'Q18262938']
SELECT DISTINCT ?x WHERE { resource:Q18262938 property:P684 ?x . ?x rdf:type ontology:Q863908 }
Trap1
action filter_type
action find
entity Trap1
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'Trap1']
SELECT DISTINCT ?x WHERE { resource:Trap1 property:ortholog ?x . ?x rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18035055
SYSTEM
TRAP1
Q18035055
(c(Q863908),P684,Q18262938)
action filter_type
action find
entity Q18262938
relation P684
type Q863908
[ANSWER] is Trap1 an orthlogous gene of
[{'concept': 'Q863908'}, 'P684', 'Q18262938']
SELECT DISTINCT ?x WHERE { resource:Q18262938 property:P684 ?x . ?x rdf:type ontology:Q863908 }
TRAP1
TRAP1 is Trap1 an orthlogous gene of
TRAP1
action filter_type
action find
entity Trap1
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'Trap1']
SELECT DISTINCT ?x WHERE { resource:Trap1 property:ortholog ?x . ?x rdf:type ontology:nucleic_acid_sequence }
[]