Simple Question (Direct)
Simple Question
Q23550532
P703
Q16521
USER
Which taxon is dephospho-CoA kinase    THEYE_A0705 found in ?
(Q23550532,P703,c(Q16521))
action filter_type
action find
entity Q23550532
relation P703
type Q16521
['Q23550532', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:Q16521 . resource:Q23550532 property:P703 ?j }
dephospho-CoA kinase    THEYE_A0705
action filter_type
action find
entity dephospho-CoA kinase    THEYE_A0705
relation found in taxon
type taxon
['dephospho-CoA kinase    THEYE_A0705', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:taxon . resource:dephospho-CoA_kinase____THEYE_A0705 property:found_in_taxon ?j }
[]
taxon
Q23309243
SYSTEM
Thermodesulfovibrio yellowstonii DSM 11347
Q23309243
(Q23550532,P703,c(Q16521))
action filter_type
action find
entity Q23550532
relation P703
type Q16521
Which taxon is dephospho-CoA kinase THEYE_A0705 found in
['Q23550532', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:Q16521 . resource:Q23550532 property:P703 ?j }
Thermodesulfovibrio yellowstonii DSM 11347
Which taxon is dephospho-CoA kinase THEYE_A0705 found in
Thermodesulfovibrio yellowstonii DSM 11347
action filter_type
action find
entity dephospho-CoA kinase    THEYE_A0705
relation found in taxon
type taxon
['dephospho-CoA kinase    THEYE_A0705', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:taxon . resource:dephospho-CoA_kinase____THEYE_A0705 property:found_in_taxon ?j }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23550532
P681
Q15989253
USER
What is a component of that nutrient ?
(Q23309243,P681,c(Q15989253))
action filter_type
action find
entity Q23550532
relation P681
type Q15989253
['Q23309243', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?c WHERE { resource:Q23550532 property:P681 ?c . ?c rdf:type ontology:Q15989253 }
dephospho-CoA kinase    THEYE_A0705
action filter_type
action find
entity dephospho-CoA kinase    THEYE_A0705
relation cell component
type part
['Thermodesulfovibrio yellowstonii DSM 11347', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?c WHERE { resource:dephospho-CoA_kinase____THEYE_A0705 property:cell_component ?c . ?c rdf:type ontology:part }
[]
part
Q79899
SYSTEM
cytoplasm
Q79899
(Q23309243,P681,c(Q15989253))
action filter_type
action find
entity Q23550532
relation P681
type Q15989253
A component of that nutrient is the [ANSWER]
['Q23309243', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?c WHERE { resource:Q23550532 property:P681 ?c . ?c rdf:type ontology:Q15989253 }
cytoplasm
A component of that nutrient is the cytoplasm
cytoplasm
action filter_type
action find
entity dephospho-CoA kinase    THEYE_A0705
relation cell component
type part
['Thermodesulfovibrio yellowstonii DSM 11347', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?c WHERE { resource:dephospho-CoA_kinase____THEYE_A0705 property:cell_component ?c . ?c rdf:type ontology:part }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q14890113
Q15989253
USER
And also tell me about Basement membrane-specific heparan sulfate proteoglycan core protein?
(Q14890113,P681,c(Q15989253))
action filter_type
action find
entity Q14890113
relation P681
type Q15989253
['Q14890113', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?t WHERE { resource:Q14890113 property:P681 ?t . ?t rdf:type ontology:Q15989253 }
Basement membrane-specific heparan sulfate proteoglycan core protein
action filter_type
action find
entity Basement membrane-specific heparan sulfate proteoglycan core protein
relation cell component
type part
['Basement membrane-specific heparan sulfate proteoglycan core protein', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?t WHERE { resource:Basement_membrane-specific_heparan_sulfate_proteoglycan_core_protein property:cell_component ?t . ?t rdf:type ontology:part }
[]
part
Q14645596
SYSTEM
extracellular region
Q14645596
(Q14890113,P681,c(Q15989253))
action filter_type
action find
entity Q14890113
relation P681
type Q15989253
[ANSWER]
['Q14890113', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?t WHERE { resource:Q14890113 property:P681 ?t . ?t rdf:type ontology:Q15989253 }
extracellular region
extracellular region
action filter_type
action find
entity Basement membrane-specific heparan sulfate proteoglycan core protein
relation cell component
type part
['Basement membrane-specific heparan sulfate proteoglycan core protein', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?t WHERE { resource:Basement_membrane-specific_heparan_sulfate_proteoglycan_core_protein property:cell_component ?t . ?t rdf:type ontology:part }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q14890113
P688
Q863908
USER
Which nucleic acid sequence encodes Basement membrane-specific heparan sulfate proteoglycan core protein ?
(c(Q863908),P688,Q14890113)
action filter_type
action find_reverse
entity Q14890113
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q14890113']
SELECT DISTINCT ?q WHERE { ?q property:P688 resource:Q14890113 . ?q rdf:type ontology:Q863908 }
Basement membrane-specific heparan sulfate proteoglycan core protein
action filter_type
action find_reverse
entity Basement membrane-specific heparan sulfate proteoglycan core protein
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Basement membrane-specific heparan sulfate proteoglycan core protein']
SELECT DISTINCT ?q WHERE { ?q property:encodes resource:Basement_membrane-specific_heparan_sulfate_proteoglycan_core_protein . ?q rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q14890111
SYSTEM
Hspg2
Q14890111
(c(Q863908),P688,Q14890113)
action filter_type
action find_reverse
entity Q14890113
relation P688
type Q863908
[ANSWER] encodes Basement membrane-specific heparan sulfate proteoglycan core protein
[{'concept': 'Q863908'}, 'P688', 'Q14890113']
SELECT DISTINCT ?q WHERE { ?q property:P688 resource:Q14890113 . ?q rdf:type ontology:Q863908 }
Hspg2
Hspg2 encodes Basement membrane-specific heparan sulfate proteoglycan core protein
Hspg2
action filter_type
action find_reverse
entity Basement membrane-specific heparan sulfate proteoglycan core protein
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Basement membrane-specific heparan sulfate proteoglycan core protein']
SELECT DISTINCT ?q WHERE { ?q property:encodes resource:Basement_membrane-specific_heparan_sulfate_proteoglycan_core_protein . ?q rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q14890111
P684
Q863908
USER
What is an otrhologus gene for that one ?
(Q14890111,P684,c(Q863908))
action filter_type
action find
entity Q14890111
relation P684
type Q863908
['Q14890111', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?o WHERE { ?o rdf:type ontology:Q863908 . resource:Q14890111 property:P684 ?o }
Hspg2
action filter_type
action find
entity Hspg2
relation ortholog
type nucleic acid sequence
['Hspg2', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?o WHERE { ?o rdf:type ontology:nucleic_acid_sequence . resource:Hspg2 property:ortholog ?o }
[]
nucleic acid sequence
Q14890110
SYSTEM
HSPG2
Q14890110
(Q14890111,P684,c(Q863908))
action filter_type
action find
entity Q14890111
relation P684
type Q863908
An otrhologus gene for that one is a [ANSWER]
['Q14890111', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?o WHERE { ?o rdf:type ontology:Q863908 . resource:Q14890111 property:P684 ?o }
HSPG2
An otrhologus gene for that one is a HSPG2
HSPG2
action filter_type
action find
entity Hspg2
relation ortholog
type nucleic acid sequence
['Hspg2', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?o WHERE { ?o rdf:type ontology:nucleic_acid_sequence . resource:Hspg2 property:ortholog ?o }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q18042091
Q863908
USER
And what about CAND1?
(Q18042091,P684,c(Q863908))
action filter_type
action find
entity Q18042091
relation P684
type Q863908
['Q18042091', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?z WHERE { resource:Q18042091 property:P684 ?z . ?z rdf:type ontology:Q863908 }
CAND1
action filter_type
action find
entity CAND1
relation ortholog
type nucleic acid sequence
['CAND1', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?z WHERE { resource:CAND1 property:ortholog ?z . ?z rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18265151
SYSTEM
Cand1
Q18265151
(Q18042091,P684,c(Q863908))
action filter_type
action find
entity Q18042091
relation P684
type Q863908
[ANSWER]
['Q18042091', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?z WHERE { resource:Q18042091 property:P684 ?z . ?z rdf:type ontology:Q863908 }
Cand1
Cand1
action filter_type
action find
entity CAND1
relation ortholog
type nucleic acid sequence
['CAND1', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?z WHERE { resource:CAND1 property:ortholog ?z . ?z rdf:type ontology:nucleic_acid_sequence }
[]
Quantitative Reasoning (All)
Quantitative|Min/Max|Mult. entity type
P129
Q181394 Q79529 Q181394
USER
Which nutrients do max number of chemical substances or nutrients communicate with ?
(c(Q79529)|c(Q181394),P129,c(Q181394))
action argmax
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
[[{'concept': 'Q79529'}, {'concept': 'Q181394'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?q WHERE { { SELECT DISTINCT ( MAX ( ?i ) AS ?a ) { SELECT DISTINCT ( COUNT ( ?l ) AS ?i ) ?o WHERE { VALUES ( ?p ) { ( ontology:Q79529 ) ( ontology:Q181394 ) } . ?l rdf:type ?p } GROUP BY ?o } } . FILTER ( ?t = ?a ) . { SELECT DISTINCT ( COUNT ( ?x ) AS ?t ) ?q WHERE { { ?q rdf:type ontology:Q181394 . ?x rdf:type ontology:Q79529 . ?x property:P129 ?q } UNION { ?x property:P129 ?q . ?q rdf:type ontology:Q181394 . ?x rdf:type ontology:Q181394 } } GROUP BY ?q } }
action argmax
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
[[{'concept': 'chemical substance'}, {'concept': 'nutrient'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?q WHERE { { SELECT DISTINCT ( MAX ( ?i ) AS ?a ) { SELECT DISTINCT ( COUNT ( ?l ) AS ?i ) ?o WHERE { VALUES ( ?p ) { ( ontology:chemical_substance ) ( ontology:nutrient ) } . ?l rdf:type ?p } GROUP BY ?o } } . FILTER ( ?t = ?a ) . { SELECT DISTINCT ( COUNT ( ?x ) AS ?t ) ?q WHERE { { ?q rdf:type ontology:nutrient . ?x rdf:type ontology:chemical_substance . ?x property:physically_interacts_with ?q } UNION { ?x property:physically_interacts_with ?q . ?q rdf:type ontology:nutrient . ?x rdf:type ontology:nutrient } } GROUP BY ?q } }
[]
nutrient chemical substance nutrient
Q1949517
SYSTEM
5-hydroxytryptamine receptor 2A
Q1949517
(c(Q79529)|c(Q181394),P129,c(Q181394))
action argmax
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
Receptor [ANSWER] max number of chemical substances or nutrients communicate with
[[{'concept': 'Q79529'}, {'concept': 'Q181394'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?q WHERE { { SELECT DISTINCT ( MAX ( ?i ) AS ?a ) { SELECT DISTINCT ( COUNT ( ?l ) AS ?i ) ?o WHERE { VALUES ( ?p ) { ( ontology:Q79529 ) ( ontology:Q181394 ) } . ?l rdf:type ?p } GROUP BY ?o } } . FILTER ( ?t = ?a ) . { SELECT DISTINCT ( COUNT ( ?x ) AS ?t ) ?q WHERE { { ?q rdf:type ontology:Q181394 . ?x rdf:type ontology:Q79529 . ?x property:P129 ?q } UNION { ?x property:P129 ?q . ?q rdf:type ontology:Q181394 . ?x rdf:type ontology:Q181394 } } GROUP BY ?q } }
5-hydroxytryptamine receptor 2A
Receptor 5-hydroxytryptamine receptor 2A max number of chemical substances or nutrients communicate with
5-hydroxytryptamine receptor 2A
action argmax
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
[[{'concept': 'chemical substance'}, {'concept': 'nutrient'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?q WHERE { { SELECT DISTINCT ( MAX ( ?i ) AS ?a ) { SELECT DISTINCT ( COUNT ( ?l ) AS ?i ) ?o WHERE { VALUES ( ?p ) { ( ontology:chemical_substance ) ( ontology:nutrient ) } . ?l rdf:type ?p } GROUP BY ?o } } . FILTER ( ?t = ?a ) . { SELECT DISTINCT ( COUNT ( ?x ) AS ?t ) ?q WHERE { { ?q rdf:type ontology:nutrient . ?x rdf:type ontology:chemical_substance . ?x property:physically_interacts_with ?q } UNION { ?x property:physically_interacts_with ?q . ?q rdf:type ontology:nutrient . ?x rdf:type ontology:nutrient } } GROUP BY ?q } }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q8386 Q181394 Q181394
USER
How many nutrients contact exactly 25 drugs and nutrients ?
(c(Q181394),P129,c(Q8386)|c(Q181394))
action count
action equal
action union
action find_tuple_counts
relation P129
type Q181394
type Q8386
action find_tuple_counts
relation P129
type Q181394
type Q181394
value 25
[{'concept': 'Q181394'}, 'P129', [{'concept': 'Q8386'}, {'concept': 'Q181394'}]]
SELECT DISTINCT ( COUNT ( ?t ) AS ?l ) WHERE { { SELECT DISTINCT ( COUNT ( ?x ) AS ?e ) ?t WHERE { { ?t property:P129 ?x . ?t rdf:type ontology:Q181394 . ?x rdf:type ontology:Q8386 } UNION { ?t property:P129 ?x . ?t rdf:type ontology:Q181394 . ?x rdf:type ontology:Q181394 } } GROUP BY ?t } . FILTER ( ?e = 25 ) }
action count
action equal
action union
action find_tuple_counts
relation physically interacts with
type nutrient
type drug
action find_tuple_counts
relation physically interacts with
type nutrient
type nutrient
value 25
[{'concept': 'nutrient'}, 'physically interacts with', [{'concept': 'drug'}, {'concept': 'nutrient'}]]
SELECT DISTINCT ( COUNT ( ?t ) AS ?l ) WHERE { { SELECT DISTINCT ( COUNT ( ?x ) AS ?e ) ?t WHERE { { ?t property:physically_interacts_with ?x . ?t rdf:type ontology:nutrient . ?x rdf:type ontology:drug } UNION { ?t property:physically_interacts_with ?x . ?t rdf:type ontology:nutrient . ?x rdf:type ontology:nutrient } } GROUP BY ?t } . FILTER ( ?e = 25 ) }
[]
drug nutrient nutrient
SYSTEM
1
Q288797
(c(Q181394),P129,c(Q8386)|c(Q181394))
action count
action equal
action union
action find_tuple_counts
relation P129
type Q181394
type Q8386
action find_tuple_counts
relation P129
type Q181394
type Q181394
value 25
[ANSWER]
[{'concept': 'Q181394'}, 'P129', [{'concept': 'Q8386'}, {'concept': 'Q181394'}]]
SELECT DISTINCT ( COUNT ( ?t ) AS ?l ) WHERE { { SELECT DISTINCT ( COUNT ( ?x ) AS ?e ) ?t WHERE { { ?t property:P129 ?x . ?t rdf:type ontology:Q181394 . ?x rdf:type ontology:Q8386 } UNION { ?t property:P129 ?x . ?t rdf:type ontology:Q181394 . ?x rdf:type ontology:Q181394 } } GROUP BY ?t } . FILTER ( ?e = 25 ) }
5-hydroxytryptamine receptor 1B
1
action count
action equal
action union
action find_tuple_counts
relation physically interacts with
type nutrient
type drug
action find_tuple_counts
relation physically interacts with
type nutrient
type nutrient
value 25
[{'concept': 'nutrient'}, 'physically interacts with', [{'concept': 'drug'}, {'concept': 'nutrient'}]]
SELECT DISTINCT ( COUNT ( ?t ) AS ?l ) WHERE { { SELECT DISTINCT ( COUNT ( ?x ) AS ?e ) ?t WHERE { { ?t property:physically_interacts_with ?x . ?t rdf:type ontology:nutrient . ?x rdf:type ontology:drug } UNION { ?t property:physically_interacts_with ?x . ?t rdf:type ontology:nutrient . ?x rdf:type ontology:nutrient } } GROUP BY ?t } . FILTER ( ?e = 25 ) }
[]