Simple Question (Direct)
Simple Question
Q23579371
P703
Q631147
USER
Where is 50S ribosomal protein L14    AMED_0687 found ?
(Q23579371,P703,c(Q631147))
action filter_type
action find
entity Q23579371
relation P703
type Q631147
['Q23579371', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?a WHERE { resource:Q23579371 property:P703 ?a . ?a rdf:type ontology:Q631147 }
50S ribosomal protein L14    AMED_0687
action filter_type
action find
entity 50S ribosomal protein L14    AMED_0687
relation found in taxon
type infraspecific name
['50S ribosomal protein L14    AMED_0687', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?a WHERE { resource:50S_ribosomal_protein_L14____AMED_0687 property:found_in_taxon ?a . ?a rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102998
SYSTEM
Amycolatopsis mediterranei U32
Q21102998
(Q23579371,P703,c(Q631147))
action filter_type
action find
entity Q23579371
relation P703
type Q631147
50S ribosomal protein L14 AMED_0687 is found in [ANSWER]
['Q23579371', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?a WHERE { resource:Q23579371 property:P703 ?a . ?a rdf:type ontology:Q631147 }
Amycolatopsis mediterranei U32
50S ribosomal protein L14 AMED_0687 is found in Amycolatopsis mediterranei U32
Amycolatopsis mediterranei U32
action filter_type
action find
entity 50S ribosomal protein L14    AMED_0687
relation found in taxon
type infraspecific name
['50S ribosomal protein L14    AMED_0687', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?a WHERE { resource:50S_ribosomal_protein_L14____AMED_0687 property:found_in_taxon ?a . ?a rdf:type ontology:infraspecific_name }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23579371
P681
Q15989253
USER
Which is the cell component of 50S ribosomal protein L14    AMED_0687 ?
(Q23579371,P681,c(Q15989253))
action filter_type
action find
entity Q23579371
relation P681
type Q15989253
['Q23579371', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?n WHERE { resource:Q23579371 property:P681 ?n . ?n rdf:type ontology:Q15989253 }
50S ribosomal protein L14    AMED_0687
action filter_type
action find
entity 50S ribosomal protein L14    AMED_0687
relation cell component
type part
['50S ribosomal protein L14    AMED_0687', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?n WHERE { resource:50S_ribosomal_protein_L14____AMED_0687 property:cell_component ?n . ?n rdf:type ontology:part }
[]
part
Q42244
SYSTEM
ribosome
Q42244
(Q23579371,P681,c(Q15989253))
action filter_type
action find
entity Q23579371
relation P681
type Q15989253
[ANSWER] is the cell component of 50S ribosomal protein L14 AMED_0687
['Q23579371', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?n WHERE { resource:Q23579371 property:P681 ?n . ?n rdf:type ontology:Q15989253 }
ribosome
Ribosome is the cell component of 50S ribosomal protein L14 AMED_0687
ribosome
action filter_type
action find
entity 50S ribosomal protein L14    AMED_0687
relation cell component
type part
['50S ribosomal protein L14    AMED_0687', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?n WHERE { resource:50S_ribosomal_protein_L14____AMED_0687 property:cell_component ?n . ?n rdf:type ontology:part }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q21207979
Q15989253
USER
And how about Trophoblast glycoprotein?
(Q21207979,P681,c(Q15989253))
action filter_type
action find
entity Q21207979
relation P681
type Q15989253
['Q21207979', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:Q15989253 . resource:Q21207979 property:P681 ?x }
Trophoblast glycoprotein
action filter_type
action find
entity Trophoblast glycoprotein
relation cell component
type part
['Trophoblast glycoprotein', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:part . resource:Trophoblast_glycoprotein property:cell_component ?x }
[]
part
Q14349455 Q79899
SYSTEM
membrane, cytoplasm
Q14349455 Q79899
(Q21207979,P681,c(Q15989253))
action filter_type
action find
entity Q21207979
relation P681
type Q15989253
[ANSWERS]
['Q21207979', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:Q15989253 . resource:Q21207979 property:P681 ?x }
membrane cytoplasm
membrane cytoplasm
action filter_type
action find
entity Trophoblast glycoprotein
relation cell component
type part
['Trophoblast glycoprotein', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:part . resource:Trophoblast_glycoprotein property:cell_component ?x }
[]
Verification (Boolean) (All)
Verification|one entity, multiple entities (as object) referred indirectly
Q24099248
P681
Q181394
USER
Do ABC transporter ATP-binding protein    XCC3660 have those parts as their cell component ?
(Q24099248,P681,Q14349455) (Q24099248,P681,Q79899)
action is_in
entity prev_answer
action find
entity Q24099248
relation P681
['Q24099248', 'P681', 'Q14349455'] ['Q24099248', 'P681', 'Q79899']
ASK WHERE { resource:Q24099248 property:P681 ?t . VALUES ( ?t ) { ( resource:Q14349455 ) ( resource:Q79899 ) } }
ABC transporter ATP-binding protein    XCC3660
action is_in
entity prev_answer
action find
entity ABC transporter ATP-binding protein    XCC3660
relation cell component
['ABC transporter ATP-binding protein    XCC3660', 'cell component', 'membrane'] ['ABC transporter ATP-binding protein    XCC3660', 'cell component', 'cytoplasm']
ASK WHERE { resource:ABC_transporter_ATP-binding_protein____XCC3660 property:cell_component ?t . VALUES ( ?t ) { ( resource:membrane ) ( resource:cytoplasm ) } }
[]
nutrient
SYSTEM
NO
(Q24099248,P681,Q14349455) (Q24099248,P681,Q79899)
action is_in
entity prev_answer
action find
entity Q24099248
relation P681
[ANSWER]
['Q24099248', 'P681', 'Q14349455'] ['Q24099248', 'P681', 'Q79899']
ASK WHERE { resource:Q24099248 property:P681 ?t . VALUES ( ?t ) { ( resource:Q14349455 ) ( resource:Q79899 ) } }
No
action is_in
entity prev_answer
action find
entity ABC transporter ATP-binding protein    XCC3660
relation cell component
['ABC transporter ATP-binding protein    XCC3660', 'cell component', 'membrane'] ['ABC transporter ATP-binding protein    XCC3660', 'cell component', 'cytoplasm']
ASK WHERE { resource:ABC_transporter_ATP-binding_protein____XCC3660 property:cell_component ?t . VALUES ( ?t ) { ( resource:membrane ) ( resource:cytoplasm ) } }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q4216687
Q181394
USER
And how about Caspase-9?
(Q4216687,P681,c(Q181394))
action filter_type
action find
entity Q4216687
relation P681
type Q181394
['Q4216687', 'P681', {'concept': 'Q181394'}]
SELECT DISTINCT ?r WHERE { resource:Q4216687 property:P681 ?r . ?r rdf:type ontology:Q181394 }
Caspase-9
action filter_type
action find
entity Caspase-9
relation cell component
type nutrient
['Caspase-9', 'cell component', {'concept': 'nutrient'}]
SELECT DISTINCT ?r WHERE { resource:Caspase-9 property:cell_component ?r . ?r rdf:type ontology:nutrient }
[]
nutrient
Q2061363
SYSTEM
apoptosome
Q2061363
(Q4216687,P681,c(Q181394))
action filter_type
action find
entity Q4216687
relation P681
type Q181394
[ANSWER]
['Q4216687', 'P681', {'concept': 'Q181394'}]
SELECT DISTINCT ?r WHERE { resource:Q4216687 property:P681 ?r . ?r rdf:type ontology:Q181394 }
apoptosome
apoptosome
action filter_type
action find
entity Caspase-9
relation cell component
type nutrient
['Caspase-9', 'cell component', {'concept': 'nutrient'}]
SELECT DISTINCT ?r WHERE { resource:Caspase-9 property:cell_component ?r . ?r rdf:type ontology:nutrient }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Single entity type
P682
Q3249551 Q181394
USER
How many processes are atmost 11329 nutrients involved in ?
(c(Q181394),P682,c(Q3249551))
action count
action atmost
action find_reverse_tuple_counts
relation P682
type Q3249551
type Q181394
value 11329
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q3249551'}]
SELECT DISTINCT ( COUNT ( ?q ) AS ?x ) WHERE { { SELECT DISTINCT ?q ( COUNT ( ?s ) AS ?v ) WHERE { ?s property:P682 ?q . ?q rdf:type ontology:Q3249551 . ?s rdf:type ontology:Q181394 } GROUP BY ?q } . FILTER ( ?v <= 11329 ) }
action count
action atmost
action find_reverse_tuple_counts
relation biological process
type process
type nutrient
value 11329
[{'concept': 'nutrient'}, 'biological process', {'concept': 'process'}]
SELECT DISTINCT ( COUNT ( ?q ) AS ?x ) WHERE { { SELECT DISTINCT ?q ( COUNT ( ?s ) AS ?v ) WHERE { ?s property:biological_process ?q . ?q rdf:type ontology:process . ?s rdf:type ontology:nutrient } GROUP BY ?q } . FILTER ( ?v <= 11329 ) }
[]
process nutrient
SYSTEM
14
Q22269718 Q306383 Q14820058 Q22284496 Q22271548 Q9332 Q22293230 Q14873025 Q14916317 Q14859560 Q14865172 Q14885910 Q14864472 Q162925
(c(Q181394),P682,c(Q3249551))
action count
action atmost
action find_reverse_tuple_counts
relation P682
type Q3249551
type Q181394
value 11329
[ANSWER]
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q3249551'}]
SELECT DISTINCT ( COUNT ( ?q ) AS ?x ) WHERE { { SELECT DISTINCT ?q ( COUNT ( ?s ) AS ?v ) WHERE { ?s property:P682 ?q . ?q rdf:type ontology:Q3249551 . ?s rdf:type ontology:Q181394 } GROUP BY ?q } . FILTER ( ?v <= 11329 ) }
locomotion G1/S transition of mitotic cell cycle growth biological regulation cell killing behavior developmental process cellular process immune system process response to stimulus signaling reproductive process rhythmic process meiotic nuclear division
14
action count
action atmost
action find_reverse_tuple_counts
relation biological process
type process
type nutrient
value 11329
[{'concept': 'nutrient'}, 'biological process', {'concept': 'process'}]
SELECT DISTINCT ( COUNT ( ?q ) AS ?x ) WHERE { { SELECT DISTINCT ?q ( COUNT ( ?s ) AS ?v ) WHERE { ?s property:biological_process ?q . ?q rdf:type ontology:process . ?s rdf:type ontology:nutrient } GROUP BY ?q } . FILTER ( ?v <= 11329 ) }
[]
Quantitative Reasoning (Count) (All)
Incomplete count-based ques
Q23257162
Q863908
USER
And how about amidase    Mb2912c?
(Q23257162,P688,c(Q863908))
action count
action filter_type
action find
entity Q23257162
relation P688
type Q863908
['Q23257162', 'P688', {'concept': 'Q863908'}]
SELECT DISTINCT ( COUNT ( ?v ) AS ?m ) WHERE { ?v rdf:type ontology:Q863908 . resource:Q23257162 property:P688 ?v }
amidase    Mb2912c
action count
action filter_type
action find
entity amidase    Mb2912c
relation encodes
type nucleic acid sequence
['amidase    Mb2912c', 'encodes', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ( COUNT ( ?v ) AS ?m ) WHERE { ?v rdf:type ontology:nucleic_acid_sequence . resource:amidase____Mb2912c property:encodes ?v }
[]
nucleic acid sequence
SYSTEM
1
(Q23257162,P688,c(Q863908))
action count
action filter_type
action find
entity Q23257162
relation P688
type Q863908
[ANSWER]
['Q23257162', 'P688', {'concept': 'Q863908'}]
SELECT DISTINCT ( COUNT ( ?v ) AS ?m ) WHERE { ?v rdf:type ontology:Q863908 . resource:Q23257162 property:P688 ?v }
1
action count
action filter_type
action find
entity amidase    Mb2912c
relation encodes
type nucleic acid sequence
['amidase    Mb2912c', 'encodes', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ( COUNT ( ?v ) AS ?m ) WHERE { ?v rdf:type ontology:nucleic_acid_sequence . resource:amidase____Mb2912c property:encodes ?v }
[]
Quantitative Reasoning (All)
Quantitative|Min/Max|Single entity type
P682
Q3249551 Q181394
USER
Which processes are min number of nutrients involved in ?
(c(Q181394),P682,Q162925)
action argmin
action find_reverse_tuple_counts
relation P682
type Q3249551
type Q181394
[{'concept': 'Q181394'}, 'P682', 'Q162925']
SELECT DISTINCT ?q WHERE { { SELECT DISTINCT ( MIN ( ?r ) AS ?c ) { SELECT DISTINCT ?l ( COUNT ( ?w ) AS ?r ) WHERE { ?w property:P682 ?l . ?l rdf:type ontology:Q3249551 . ?w rdf:type ontology:Q181394 } GROUP BY ?l } } . { SELECT DISTINCT ?q ( COUNT ( ?h ) AS ?e ) WHERE { ?h property:P682 ?q . ?q rdf:type ontology:Q3249551 . ?h rdf:type ontology:Q181394 } GROUP BY ?q } . FILTER ( ?e = ?c ) }
action argmin
action find_reverse_tuple_counts
relation biological process
type process
type nutrient
[{'concept': 'nutrient'}, 'biological process', 'meiotic nuclear division']
SELECT DISTINCT ?q WHERE { { SELECT DISTINCT ( MIN ( ?r ) AS ?c ) { SELECT DISTINCT ?l ( COUNT ( ?w ) AS ?r ) WHERE { ?w property:biological_process ?l . ?l rdf:type ontology:process . ?w rdf:type ontology:nutrient } GROUP BY ?l } } . { SELECT DISTINCT ?q ( COUNT ( ?h ) AS ?e ) WHERE { ?h property:biological_process ?q . ?q rdf:type ontology:process . ?h rdf:type ontology:nutrient } GROUP BY ?q } . FILTER ( ?e = ?c ) }
[]
process nutrient
Q22284496 Q22271548
SYSTEM
biological regulation, cell killing
Q22284496 Q22271548
(c(Q181394),P682,Q162925)
action argmin
action find_reverse_tuple_counts
relation P682
type Q3249551
type Q181394
Min number of nutrients in are involved in [ANSWERS]
[{'concept': 'Q181394'}, 'P682', 'Q162925']
SELECT DISTINCT ?q WHERE { { SELECT DISTINCT ( MIN ( ?r ) AS ?c ) { SELECT DISTINCT ?l ( COUNT ( ?w ) AS ?r ) WHERE { ?w property:P682 ?l . ?l rdf:type ontology:Q3249551 . ?w rdf:type ontology:Q181394 } GROUP BY ?l } } . { SELECT DISTINCT ?q ( COUNT ( ?h ) AS ?e ) WHERE { ?h property:P682 ?q . ?q rdf:type ontology:Q3249551 . ?h rdf:type ontology:Q181394 } GROUP BY ?q } . FILTER ( ?e = ?c ) }
biological regulation cell killing
Min number of nutrients in are involved in biological regulation and cell killing
biological regulation cell killing
action argmin
action find_reverse_tuple_counts
relation biological process
type process
type nutrient
[{'concept': 'nutrient'}, 'biological process', 'meiotic nuclear division']
SELECT DISTINCT ?q WHERE { { SELECT DISTINCT ( MIN ( ?r ) AS ?c ) { SELECT DISTINCT ?l ( COUNT ( ?w ) AS ?r ) WHERE { ?w property:biological_process ?l . ?l rdf:type ontology:process . ?w rdf:type ontology:nutrient } GROUP BY ?l } } . { SELECT DISTINCT ?q ( COUNT ( ?h ) AS ?e ) WHERE { ?h property:biological_process ?q . ?q rdf:type ontology:process . ?h rdf:type ontology:nutrient } GROUP BY ?q } . FILTER ( ?e = ?c ) }
[]
Simple Question (Coreferenced)
Simple Question|Mult. Entity
Q22284496 Q22271548
P682
Q181394
USER
Which nutrients are involved in the biologicail process those ones ?
(c(Q181394),P682,Q22284496) (c(Q181394),P682,Q22271548)
action filter_type
action find_reverse
entity prev_answer
relation P682
type Q181394
[{'concept': 'Q181394'}, 'P682', 'Q22284496'] [{'concept': 'Q181394'}, 'P682', 'Q22271548']
SELECT DISTINCT ?u WHERE { ?u property:P682 ?o . ?u rdf:type ontology:Q181394 . VALUES ( ?o ) { ( resource:Q22284496 ) ( resource:Q22271548 ) } }
biological regulation cell killing
action filter_type
action find_reverse
entity prev_answer
relation biological process
type nutrient
[{'concept': 'nutrient'}, 'biological process', 'biological regulation'] [{'concept': 'nutrient'}, 'biological process', 'cell killing']
SELECT DISTINCT ?u WHERE { ?u property:biological_process ?o . ?u rdf:type ontology:nutrient . VALUES ( ?o ) { ( resource:biological_regulation ) ( resource:cell_killing ) } }
[]
nutrient
Q27471825 Q22136486 Q23625639
SYSTEM
nucleoside diphosphate kinase regulator    NRG857_02770, nucleoside diphosphate kinase regulator    ECIAI39_0586, pyocin/colicin protein    PSPTO_5232
Q27471825 Q22136486 Q23625639 Q23514852
(c(Q181394),P682,Q22284496) (c(Q181394),P682,Q22271548)
action filter_type
action find_reverse
entity prev_answer
relation P682
type Q181394
[ANSWERS]
[{'concept': 'Q181394'}, 'P682', 'Q22284496'] [{'concept': 'Q181394'}, 'P682', 'Q22271548']
SELECT DISTINCT ?u WHERE { ?u property:P682 ?o . ?u rdf:type ontology:Q181394 . VALUES ( ?o ) { ( resource:Q22284496 ) ( resource:Q22271548 ) } }
nucleoside diphosphate kinase regulator    NRG857_02770 nucleoside diphosphate kinase regulator    ECIAI39_0586 pyocin/colicin protein    PSPTO_5232 killing factor SdpC    BSU33770
Nucleoside diphosphate kinase regulator NRG857 02770, nucleoside diphosphate kinase regulator ECIAI39 0586 and pyocin/colicin protein PSPTO 5232 are involved in the biologicail process those ones
nucleoside diphosphate kinase regulator    NRG857_02770 nucleoside diphosphate kinase regulator    ECIAI39_0586 pyocin/colicin protein    PSPTO_5232
action filter_type
action find_reverse
entity prev_answer
relation biological process
type nutrient
[{'concept': 'nutrient'}, 'biological process', 'biological regulation'] [{'concept': 'nutrient'}, 'biological process', 'cell killing']
SELECT DISTINCT ?u WHERE { ?u property:biological_process ?o . ?u rdf:type ontology:nutrient . VALUES ( ?o ) { ( resource:biological_regulation ) ( resource:cell_killing ) } }
[]