Simple Question (Direct)
Simple Question
Q23486654
P702
Q863908
USER
What encodes bifunctional folate synthesis protein    SSA_0200 ?
(Q23486654,P702,c(Q863908))
action filter_type
action find
entity Q23486654
relation P702
type Q863908
['Q23486654', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?b WHERE { resource:Q23486654 property:P702 ?b . ?b rdf:type ontology:Q863908 }
bifunctional folate synthesis protein    SSA_0200
action filter_type
action find
entity bifunctional folate synthesis protein    SSA_0200
relation encoded by
type nucleic acid sequence
['bifunctional folate synthesis protein    SSA_0200', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?b WHERE { resource:bifunctional_folate_synthesis_protein____SSA_0200 property:encoded_by ?b . ?b rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23402510
SYSTEM
bifunctional folate synthesis protein    SSA_0200
Q23402510
(Q23486654,P702,c(Q863908))
action filter_type
action find
entity Q23486654
relation P702
type Q863908
Bifunctional folate synthesis protein SSA 0200 encodes bifunctional folate synthesis protein SSA_0200
['Q23486654', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?b WHERE { resource:Q23486654 property:P702 ?b . ?b rdf:type ontology:Q863908 }
bifunctional folate synthesis protein    SSA_0200
Bifunctional folate synthesis protein SSA 0200 encodes bifunctional folate synthesis protein SSA_0200
bifunctional folate synthesis protein    SSA_0200
action filter_type
action find
entity bifunctional folate synthesis protein    SSA_0200
relation encoded by
type nucleic acid sequence
['bifunctional folate synthesis protein    SSA_0200', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?b WHERE { resource:bifunctional_folate_synthesis_protein____SSA_0200 property:encoded_by ?b . ?b rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23402510
P703
Q16521
USER
Which taxon is that nucleic acid sequence found in ?
(Q23402510,P703,c(Q16521))
action filter_type
action find
entity Q23402510
relation P703
type Q16521
['Q23402510', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?n WHERE { ?n rdf:type ontology:Q16521 . resource:Q23402510 property:P703 ?n }
bifunctional folate synthesis protein    SSA_0200
action filter_type
action find
entity bifunctional folate synthesis protein    SSA_0200
relation found in taxon
type taxon
['bifunctional folate synthesis protein    SSA_0200', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?n WHERE { ?n rdf:type ontology:taxon . resource:bifunctional_folate_synthesis_protein____SSA_0200 property:found_in_taxon ?n }
[]
taxon
Q21399278
SYSTEM
Streptococcus sanguinis SK36
Q21399278
(Q23402510,P703,c(Q16521))
action filter_type
action find
entity Q23402510
relation P703
type Q16521
That nucleic acid sequence is found in [ANSWER]
['Q23402510', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?n WHERE { ?n rdf:type ontology:Q16521 . resource:Q23402510 property:P703 ?n }
Streptococcus sanguinis SK36
That nucleic acid sequence is found in Streptococcus sanguinis SK36
Streptococcus sanguinis SK36
action filter_type
action find
entity bifunctional folate synthesis protein    SSA_0200
relation found in taxon
type taxon
['bifunctional folate synthesis protein    SSA_0200', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?n WHERE { ?n rdf:type ontology:taxon . resource:bifunctional_folate_synthesis_protein____SSA_0200 property:found_in_taxon ?n }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23402510
P688
Q181394
USER
What does that nucleic acid sequence encode ?
(Q21399278,P688,c(Q181394))
action filter_type
action find
entity Q23402510
relation P688
type Q181394
['Q21399278', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?f WHERE { resource:Q23402510 property:P688 ?f . ?f rdf:type ontology:Q181394 }
bifunctional folate synthesis protein    SSA_0200
action filter_type
action find
entity bifunctional folate synthesis protein    SSA_0200
relation encodes
type nutrient
['Streptococcus sanguinis SK36', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?f WHERE { resource:bifunctional_folate_synthesis_protein____SSA_0200 property:encodes ?f . ?f rdf:type ontology:nutrient }
[]
nutrient
Q23486654
SYSTEM
bifunctional folate synthesis protein    SSA_0200
Q23486654
(Q21399278,P688,c(Q181394))
action filter_type
action find
entity Q23402510
relation P688
type Q181394
That nucleic acid sequence encodes a bifunctional folate synthesis protein SSA 0200
['Q21399278', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?f WHERE { resource:Q23402510 property:P688 ?f . ?f rdf:type ontology:Q181394 }
bifunctional folate synthesis protein    SSA_0200
That nucleic acid sequence encodes a bifunctional folate synthesis protein SSA 0200
bifunctional folate synthesis protein    SSA_0200
action filter_type
action find
entity bifunctional folate synthesis protein    SSA_0200
relation encodes
type nutrient
['Streptococcus sanguinis SK36', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?f WHERE { resource:bifunctional_folate_synthesis_protein____SSA_0200 property:encodes ?f . ?f rdf:type ontology:nutrient }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation|Incomplete
Q22572917 Q23402510
P688
Q181394
USER
Or periplasmic alpha-amylase    YPO4080?
OR((Q23402510,P688,c(Q181394)), (Q22572917,P688,c(Q181394)))
action filter_type
action union
action find
entity Q23402510
relation P688
action find
entity Q22572917
relation P688
type Q181394
{'OR': [['Q23402510', 'P688', {'concept': 'Q181394'}], ['Q22572917', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?i WHERE { { { resource:Q23402510 property:P688 ?i } UNION { resource:Q22572917 property:P688 ?i } } . ?i rdf:type ontology:Q181394 }
periplasmic alpha-amylase    YPO4080 bifunctional folate synthesis protein    SSA_0200
action filter_type
action union
action find
entity bifunctional folate synthesis protein    SSA_0200
relation encodes
action find
entity periplasmic alpha-amylase    YPO4080
relation encodes
type nutrient
{'OR': [['bifunctional folate synthesis protein    SSA_0200', 'encodes', {'concept': 'nutrient'}], ['periplasmic alpha-amylase    YPO4080', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?i WHERE { { { resource:bifunctional_folate_synthesis_protein____SSA_0200 property:encodes ?i } UNION { resource:periplasmic_alpha-amylase____YPO4080 property:encodes ?i } } . ?i rdf:type ontology:nutrient }
[]
nutrient
Q27483927 Q23486654
SYSTEM
periplasmic alpha-amylase    YPO4080, bifunctional folate synthesis protein    SSA_0200
Q27483927 Q23486654
OR((Q23402510,P688,c(Q181394)), (Q22572917,P688,c(Q181394)))
action filter_type
action union
action find
entity Q23402510
relation P688
action find
entity Q22572917
relation P688
type Q181394
[ANSWERS]
{'OR': [['Q23402510', 'P688', {'concept': 'Q181394'}], ['Q22572917', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?i WHERE { { { resource:Q23402510 property:P688 ?i } UNION { resource:Q22572917 property:P688 ?i } } . ?i rdf:type ontology:Q181394 }
periplasmic alpha-amylase    YPO4080 bifunctional folate synthesis protein    SSA_0200
periplasmic alpha-amylase    YPO4080 bifunctional folate synthesis protein    SSA_0200
action filter_type
action union
action find
entity bifunctional folate synthesis protein    SSA_0200
relation encodes
action find
entity periplasmic alpha-amylase    YPO4080
relation encodes
type nutrient
{'OR': [['bifunctional folate synthesis protein    SSA_0200', 'encodes', {'concept': 'nutrient'}], ['periplasmic alpha-amylase    YPO4080', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?i WHERE { { { resource:bifunctional_folate_synthesis_protein____SSA_0200 property:encodes ?i } UNION { resource:periplasmic_alpha-amylase____YPO4080 property:encodes ?i } } . ?i rdf:type ontology:nutrient }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q23181927
Q181394
USER
And also tell me about ABC superfamily ATP binding cassette transporter, membrane protein    HMPREF0351_11398?
(Q23181927,P688,c(Q181394))
action filter_type
action find
entity Q23181927
relation P688
type Q181394
['Q23181927', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?x WHERE { resource:Q23181927 property:P688 ?x . ?x rdf:type ontology:Q181394 }
ABC superfamily ATP binding cassette transporter, membrane protein    HMPREF0351_11398
action filter_type
action find
entity ABC superfamily ATP binding cassette transporter, membrane protein    HMPREF0351_11398
relation encodes
type nutrient
['ABC superfamily ATP binding cassette transporter, membrane protein    HMPREF0351_11398', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?x WHERE { resource:ABC_superfamily_ATP_binding_cassette_transporter,_membrane_protein____HMPREF0351_11398 property:encodes ?x . ?x rdf:type ontology:nutrient }
[]
nutrient
Q23504827
SYSTEM
ABC superfamily ATP binding cassette transporter, membrane protein    HMPREF0351_11398
Q23504827
(Q23181927,P688,c(Q181394))
action filter_type
action find
entity Q23181927
relation P688
type Q181394
[ANSWER]
['Q23181927', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?x WHERE { resource:Q23181927 property:P688 ?x . ?x rdf:type ontology:Q181394 }
ABC superfamily ATP binding cassette transporter, membrane protein    HMPREF0351_11398
ABC superfamily ATP binding cassette transporter, membrane protein    HMPREF0351_11398
action filter_type
action find
entity ABC superfamily ATP binding cassette transporter, membrane protein    HMPREF0351_11398
relation encodes
type nutrient
['ABC superfamily ATP binding cassette transporter, membrane protein    HMPREF0351_11398', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?x WHERE { resource:ABC_superfamily_ATP_binding_cassette_transporter,_membrane_protein____HMPREF0351_11398 property:encodes ?x . ?x rdf:type ontology:nutrient }
[]
Verification (Boolean) (All)
Verification|3 entities, 2 direct, 2(direct) are query entities, subject is indirect
Q23504827 Q23181927 Q18272435
P702
Q863908
USER
Is that nutrient encoded by ABC superfamily ATP binding cassette transporter, membrane protein    HMPREF0351_11398 and AU022490 ?
(Q23504827,P702,Q23181927) (Q23504827,P702,Q18272435)
action is_in
entity Q23504827
action intersection
action find_reverse
entity Q23181927
relation P702
action find_reverse
entity Q18272435
relation P702
['Q23504827', 'P702', 'Q23181927'] ['Q23504827', 'P702', 'Q18272435']
ASK WHERE { resource:Q23504827 property:P702 resource:Q18272435 . resource:Q23504827 property:P702 resource:Q23181927 }
ABC superfamily ATP binding cassette transporter, membrane protein    HMPREF0351_11398 ABC superfamily ATP binding cassette transporter, membrane protein    HMPREF0351_11398 AU022490
action is_in
entity ABC superfamily ATP binding cassette transporter, membrane protein    HMPREF0351_11398
action intersection
action find_reverse
entity ABC superfamily ATP binding cassette transporter, membrane protein    HMPREF0351_11398
relation encoded by
action find_reverse
entity AU022490
relation encoded by
['ABC superfamily ATP binding cassette transporter, membrane protein    HMPREF0351_11398', 'encoded by', 'ABC superfamily ATP binding cassette transporter, membrane protein    HMPREF0351_11398'] ['ABC superfamily ATP binding cassette transporter, membrane protein    HMPREF0351_11398', 'encoded by', 'AU022490']
ASK WHERE { resource:ABC_superfamily_ATP_binding_cassette_transporter,_membrane_protein____HMPREF0351_11398 property:encoded_by resource:AU022490 . resource:ABC_superfamily_ATP_binding_cassette_transporter,_membrane_protein____HMPREF0351_11398 property:encoded_by resource:ABC_superfamily_ATP_binding_cassette_transporter,_membrane_protein____HMPREF0351_11398 }
[]
nucleic acid sequence
SYSTEM
YES and NO respectively
(Q23504827,P702,Q23181927) (Q23504827,P702,Q18272435)
action is_in
entity Q23504827
action intersection
action find_reverse
entity Q23181927
relation P702
action find_reverse
entity Q18272435
relation P702
[ANSWER]
['Q23504827', 'P702', 'Q23181927'] ['Q23504827', 'P702', 'Q18272435']
ASK WHERE { resource:Q23504827 property:P702 resource:Q18272435 . resource:Q23504827 property:P702 resource:Q23181927 }
YES and NO respectively
action is_in
entity ABC superfamily ATP binding cassette transporter, membrane protein    HMPREF0351_11398
action intersection
action find_reverse
entity ABC superfamily ATP binding cassette transporter, membrane protein    HMPREF0351_11398
relation encoded by
action find_reverse
entity AU022490
relation encoded by
['ABC superfamily ATP binding cassette transporter, membrane protein    HMPREF0351_11398', 'encoded by', 'ABC superfamily ATP binding cassette transporter, membrane protein    HMPREF0351_11398'] ['ABC superfamily ATP binding cassette transporter, membrane protein    HMPREF0351_11398', 'encoded by', 'AU022490']
ASK WHERE { resource:ABC_superfamily_ATP_binding_cassette_transporter,_membrane_protein____HMPREF0351_11398 property:encoded_by resource:AU022490 . resource:ABC_superfamily_ATP_binding_cassette_transporter,_membrane_protein____HMPREF0351_11398 property:encoded_by resource:ABC_superfamily_ATP_binding_cassette_transporter,_membrane_protein____HMPREF0351_11398 }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23518661 Q23486654
P688
Q863908
USER
Which nucleic acid sequences encodes bifunctional folate synthesis protein    SSA_0200 or glucose-1-phosphate adenylyltransferase    BT9727_4597 ?
OR((c(Q863908),P688,Q23486654), (c(Q863908),P688,Q23518661))
action filter_type
action union
action find_reverse
entity Q23486654
relation P688
action find_reverse
entity Q23518661
relation P688
type Q863908
{'OR': [[{'concept': 'Q863908'}, 'P688', 'Q23486654'], [{'concept': 'Q863908'}, 'P688', 'Q23518661']]}
SELECT DISTINCT ?b WHERE { { ?b property:P688 ?m . VALUES ( ?m ) { ( resource:Q23486654 ) ( resource:Q23518661 ) } } . ?b rdf:type ontology:Q863908 }
glucose-1-phosphate adenylyltransferase    BT9727_4597 bifunctional folate synthesis protein    SSA_0200
action filter_type
action union
action find_reverse
entity bifunctional folate synthesis protein    SSA_0200
relation encodes
action find_reverse
entity glucose-1-phosphate adenylyltransferase    BT9727_4597
relation encodes
type nucleic acid sequence
{'OR': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'bifunctional folate synthesis protein    SSA_0200'], [{'concept': 'nucleic acid sequence'}, 'encodes', 'glucose-1-phosphate adenylyltransferase    BT9727_4597']]}
SELECT DISTINCT ?b WHERE { { ?b property:encodes ?m . VALUES ( ?m ) { ( resource:bifunctional_folate_synthesis_protein____SSA_0200 ) ( resource:glucose-1-phosphate_adenylyltransferase____BT9727_4597 ) } } . ?b rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23381580 Q23402510
SYSTEM
glucose-1-phosphate adenylyltransferase    BT9727_4597, bifunctional folate synthesis protein    SSA_0200
Q23381580 Q23402510
OR((c(Q863908),P688,Q23486654), (c(Q863908),P688,Q23518661))
action filter_type
action union
action find_reverse
entity Q23486654
relation P688
action find_reverse
entity Q23518661
relation P688
type Q863908
[ANSWERS]
{'OR': [[{'concept': 'Q863908'}, 'P688', 'Q23486654'], [{'concept': 'Q863908'}, 'P688', 'Q23518661']]}
SELECT DISTINCT ?b WHERE { { ?b property:P688 ?m . VALUES ( ?m ) { ( resource:Q23486654 ) ( resource:Q23518661 ) } } . ?b rdf:type ontology:Q863908 }
glucose-1-phosphate adenylyltransferase    BT9727_4597 bifunctional folate synthesis protein    SSA_0200
Glucose-1-phosphate adenylyltransferase BT9727 4597 and bifunctional folate synthesis protein SSA 0200 encode bifunctional folate synthesis protein SSA_0200 or glucose-1-phosphate adenylyltransferase BT9727_4597
glucose-1-phosphate adenylyltransferase    BT9727_4597 bifunctional folate synthesis protein    SSA_0200
action filter_type
action union
action find_reverse
entity bifunctional folate synthesis protein    SSA_0200
relation encodes
action find_reverse
entity glucose-1-phosphate adenylyltransferase    BT9727_4597
relation encodes
type nucleic acid sequence
{'OR': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'bifunctional folate synthesis protein    SSA_0200'], [{'concept': 'nucleic acid sequence'}, 'encodes', 'glucose-1-phosphate adenylyltransferase    BT9727_4597']]}
SELECT DISTINCT ?b WHERE { { ?b property:encodes ?m . VALUES ( ?m ) { ( resource:bifunctional_folate_synthesis_protein____SSA_0200 ) ( resource:glucose-1-phosphate_adenylyltransferase____BT9727_4597 ) } } . ?b rdf:type ontology:nucleic_acid_sequence }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type
Q23518661
P702
Q863908
USER
How many nucleic acid sequences encode glucose-1-phosphate adenylyltransferase    BT9727_4597 ?
(Q23518661,P702,c(Q863908))
action count
action filter_type
action find
entity Q23518661
relation P702
type Q863908
['Q23518661', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ( COUNT ( ?r ) AS ?j ) WHERE { resource:Q23518661 property:P702 ?r . ?r rdf:type ontology:Q863908 }
glucose-1-phosphate adenylyltransferase    BT9727_4597
action count
action filter_type
action find
entity glucose-1-phosphate adenylyltransferase    BT9727_4597
relation encoded by
type nucleic acid sequence
['glucose-1-phosphate adenylyltransferase    BT9727_4597', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ( COUNT ( ?r ) AS ?j ) WHERE { resource:glucose-1-phosphate_adenylyltransferase____BT9727_4597 property:encoded_by ?r . ?r rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
SYSTEM
1
Q23381580
(Q23518661,P702,c(Q863908))
action count
action filter_type
action find
entity Q23518661
relation P702
type Q863908
[ANSWER]
['Q23518661', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ( COUNT ( ?r ) AS ?j ) WHERE { resource:Q23518661 property:P702 ?r . ?r rdf:type ontology:Q863908 }
glucose-1-phosphate adenylyltransferase    BT9727_4597
1
action count
action filter_type
action find
entity glucose-1-phosphate adenylyltransferase    BT9727_4597
relation encoded by
type nucleic acid sequence
['glucose-1-phosphate adenylyltransferase    BT9727_4597', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ( COUNT ( ?r ) AS ?j ) WHERE { resource:glucose-1-phosphate_adenylyltransferase____BT9727_4597 property:encoded_by ?r . ?r rdf:type ontology:nucleic_acid_sequence }
[]