Simple Question (Direct)
Simple Question
Q21988160
P682
Q1057
USER
Which metabolic process is Serine palmitoyltransferase small subunit A involved in ?
(Q21988160,P682,c(Q1057))
action filter_type
action find
entity Q21988160
relation P682
type Q1057
['Q21988160', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?w WHERE { resource:Q21988160 property:P682 ?w . ?w rdf:type ontology:Q1057 }
Serine palmitoyltransferase small subunit A
action filter_type
action find
entity Serine palmitoyltransferase small subunit A
relation biological process
type metabolic process
['Serine palmitoyltransferase small subunit A', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?w WHERE { resource:Serine_palmitoyltransferase_small_subunit_A property:biological_process ?w . ?w rdf:type ontology:metabolic_process }
[]
metabolic process
Q14349667
SYSTEM
lipid metabolic process
Q14349667
(Q21988160,P682,c(Q1057))
action filter_type
action find
entity Q21988160
relation P682
type Q1057
[ANSWER] is Serine palmitoyltransferase small subunit A involved in
['Q21988160', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?w WHERE { resource:Q21988160 property:P682 ?w . ?w rdf:type ontology:Q1057 }
lipid metabolic process
Lipid metabolic process is Serine palmitoyltransferase small subunit A involved in
lipid metabolic process
action filter_type
action find
entity Serine palmitoyltransferase small subunit A
relation biological process
type metabolic process
['Serine palmitoyltransferase small subunit A', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?w WHERE { resource:Serine_palmitoyltransferase_small_subunit_A property:biological_process ?w . ?w rdf:type ontology:metabolic_process }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21988160
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(c(Q863908),P688,Q14349667)
action filter_type
action find_reverse
entity Q21988160
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q14349667']
SELECT DISTINCT ?w WHERE { ?w property:P688 resource:Q21988160 . ?w rdf:type ontology:Q863908 }
Serine palmitoyltransferase small subunit A
action filter_type
action find_reverse
entity Serine palmitoyltransferase small subunit A
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'lipid metabolic process']
SELECT DISTINCT ?w WHERE { ?w property:encodes resource:Serine_palmitoyltransferase_small_subunit_A . ?w rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18272096
SYSTEM
Sptssa
Q18272096
(c(Q863908),P688,Q14349667)
action filter_type
action find_reverse
entity Q21988160
relation P688
type Q863908
[ANSWER] encodes that nutrient
[{'concept': 'Q863908'}, 'P688', 'Q14349667']
SELECT DISTINCT ?w WHERE { ?w property:P688 resource:Q21988160 . ?w rdf:type ontology:Q863908 }
Sptssa
Sptssa encodes that nutrient
Sptssa
action filter_type
action find_reverse
entity Serine palmitoyltransferase small subunit A
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'lipid metabolic process']
SELECT DISTINCT ?w WHERE { ?w property:encodes resource:Serine_palmitoyltransferase_small_subunit_A . ?w rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18272096
P684
Q863908
USER
Which nucleic acid sequence is an orthologous gene for that one ?
(Q18272096,P684,c(Q863908))
action filter_type
action find
entity Q18272096
relation P684
type Q863908
['Q18272096', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?y WHERE { ?y rdf:type ontology:Q863908 . resource:Q18272096 property:P684 ?y }
Sptssa
action filter_type
action find
entity Sptssa
relation ortholog
type nucleic acid sequence
['Sptssa', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?y WHERE { ?y rdf:type ontology:nucleic_acid_sequence . resource:Sptssa property:ortholog ?y }
[]
nucleic acid sequence
Q18053016
SYSTEM
SPTSSA
Q18053016
(Q18272096,P684,c(Q863908))
action filter_type
action find
entity Q18272096
relation P684
type Q863908
[ANSWER] is an orthologous gene for that one
['Q18272096', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?y WHERE { ?y rdf:type ontology:Q863908 . resource:Q18272096 property:P684 ?y }
SPTSSA
SPTSSA is an orthologous gene for that one
SPTSSA
action filter_type
action find
entity Sptssa
relation ortholog
type nucleic acid sequence
['Sptssa', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?y WHERE { ?y rdf:type ontology:nucleic_acid_sequence . resource:Sptssa property:ortholog ?y }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18053016
P703
Q16521
USER
Where is that nucleic acid sequence found ?
(Q18053016,P703,c(Q16521))
action filter_type
action find
entity Q18053016
relation P703
type Q16521
['Q18053016', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?r WHERE { resource:Q18053016 property:P703 ?r . ?r rdf:type ontology:Q16521 }
SPTSSA
action filter_type
action find
entity SPTSSA
relation found in taxon
type taxon
['SPTSSA', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?r WHERE { resource:SPTSSA property:found_in_taxon ?r . ?r rdf:type ontology:taxon }
[]
taxon
Q15978631
SYSTEM
Homo sapiens
Q15978631
(Q18053016,P703,c(Q16521))
action filter_type
action find
entity Q18053016
relation P703
type Q16521
That nucleic acid sequence is found in [ANSWER]
['Q18053016', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?r WHERE { resource:Q18053016 property:P703 ?r . ?r rdf:type ontology:Q16521 }
Homo sapiens
That nucleic acid sequence is found in Homo sapiens
Homo sapiens
action filter_type
action find
entity SPTSSA
relation found in taxon
type taxon
['SPTSSA', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?r WHERE { resource:SPTSSA property:found_in_taxon ?r . ?r rdf:type ontology:taxon }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q18026682
Q16521
USER
And what about GUCY1B3?
(Q18026682,P703,c(Q16521))
action filter_type
action find
entity Q18026682
relation P703
type Q16521
['Q18026682', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?b WHERE { resource:Q18026682 property:P703 ?b . ?b rdf:type ontology:Q16521 }
GUCY1B3
action filter_type
action find
entity GUCY1B3
relation found in taxon
type taxon
['GUCY1B3', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?b WHERE { resource:GUCY1B3 property:found_in_taxon ?b . ?b rdf:type ontology:taxon }
[]
taxon
Q15978631
SYSTEM
Homo sapiens
Q15978631
(Q18026682,P703,c(Q16521))
action filter_type
action find
entity Q18026682
relation P703
type Q16521
[ANSWER]
['Q18026682', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?b WHERE { resource:Q18026682 property:P703 ?b . ?b rdf:type ontology:Q16521 }
Homo sapiens
Homo sapiens
action filter_type
action find
entity GUCY1B3
relation found in taxon
type taxon
['GUCY1B3', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?b WHERE { resource:GUCY1B3 property:found_in_taxon ?b . ?b rdf:type ontology:taxon }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q18051029 Q18026682
P684
Q863908
USER
Which nucleic acid sequences are the species that have GUCY1B3 or CST11 as their orthologous gene ?
OR((c(Q863908),P684,Q18026682), (c(Q863908),P684,Q18051029))
action filter_type
action union
action find_reverse
entity Q18026682
relation P684
action find_reverse
entity Q18051029
relation P684
type Q863908
{'OR': [[{'concept': 'Q863908'}, 'P684', 'Q18026682'], [{'concept': 'Q863908'}, 'P684', 'Q18051029']]}
SELECT DISTINCT ?r WHERE { { { ?r property:P684 resource:Q18026682 } UNION { ?r property:P684 resource:Q18051029 } } . ?r rdf:type ontology:Q863908 }
CST11 GUCY1B3
action filter_type
action union
action find_reverse
entity GUCY1B3
relation ortholog
action find_reverse
entity CST11
relation ortholog
type nucleic acid sequence
{'OR': [[{'concept': 'nucleic acid sequence'}, 'ortholog', 'GUCY1B3'], [{'concept': 'nucleic acid sequence'}, 'ortholog', 'CST11']]}
SELECT DISTINCT ?r WHERE { { { ?r property:ortholog resource:GUCY1B3 } UNION { ?r property:ortholog resource:CST11 } } . ?r rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18269193 Q18258074
SYSTEM
Cst11, Gucy1b3
Q18269193 Q18258074
OR((c(Q863908),P684,Q18026682), (c(Q863908),P684,Q18051029))
action filter_type
action union
action find_reverse
entity Q18026682
relation P684
action find_reverse
entity Q18051029
relation P684
type Q863908
[ANSWERS] are the species that have GUCY1B3 or CST11 as their orthologous gene
{'OR': [[{'concept': 'Q863908'}, 'P684', 'Q18026682'], [{'concept': 'Q863908'}, 'P684', 'Q18051029']]}
SELECT DISTINCT ?r WHERE { { { ?r property:P684 resource:Q18026682 } UNION { ?r property:P684 resource:Q18051029 } } . ?r rdf:type ontology:Q863908 }
Cst11 Gucy1b3
Cst11 and Gucy1b3 are the species that have GUCY1B3 or CST11 as their orthologous gene
Cst11 Gucy1b3
action filter_type
action union
action find_reverse
entity GUCY1B3
relation ortholog
action find_reverse
entity CST11
relation ortholog
type nucleic acid sequence
{'OR': [[{'concept': 'nucleic acid sequence'}, 'ortholog', 'GUCY1B3'], [{'concept': 'nucleic acid sequence'}, 'ortholog', 'CST11']]}
SELECT DISTINCT ?r WHERE { { { ?r property:ortholog resource:GUCY1B3 } UNION { ?r property:ortholog resource:CST11 } } . ?r rdf:type ontology:nucleic_acid_sequence }
[]
Clarification
Simple Question|Single Entity|Indirect
Q18269193
P702
Q181394
USER
What is encoded by that nucleic acid sequence ?
(c(Q181394),P702,Q18269193)
action filter_type
action find_reverse
entity Q18269193
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q18269193']
SELECT DISTINCT ?n WHERE { ?n property:P702 resource:Q18269193 . ?n rdf:type ontology:Q181394 }
Cst11
action filter_type
action find_reverse
entity Cst11
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'Cst11']
SELECT DISTINCT ?n WHERE { ?n property:encoded_by resource:Cst11 . ?n rdf:type ontology:nutrient }
[]
nutrient
Clarification for simple ques.
Q18258074
SYSTEM
Did you mean Gucy1b3 ?
Q18269193 Q18258074
(c(Q181394),P702,Q18269193) (c(Q181394),P702,Q18258074)
[ANSWER]
[{'concept': 'Q181394'}, 'P702', 'Q18269193'] [{'concept': 'Q181394'}, 'P702', 'Q18258074']
SELECT DISTINCT ?n WHERE { ?n property:P702 resource:Q18269193 . ?n rdf:type ontology:Q181394 }
Cst11 Gucy1b3
Did you mean Gucy1b3 ?
Gucy1b3
[{'concept': 'nutrient'}, 'encoded by', 'Cst11'] [{'concept': 'nutrient'}, 'encoded by', 'Gucy1b3']
SELECT DISTINCT ?n WHERE { ?n property:encoded_by resource:Cst11 . ?n rdf:type ontology:nutrient }
[]
Simple Question (Coreferenced)
USER
No, I meant Cst11. Could you tell me the answer for that?
(c(Q181394),P702,Q18269193)
Q18269193
[{'concept': 'Q181394'}, 'P702', 'Q18269193']
[{'concept': 'nutrient'}, 'encoded by', 'Cst11']
[]
Q21498188
SYSTEM
Cystatin-11
Q21498188
(c(Q181394),P702,Q18269193)
action filter_type
action find_reverse
entity Q18269193
relation P702
type Q181394
The [ANSWER] is encoded by that nucleic acid sequence
[{'concept': 'Q181394'}, 'P702', 'Q18269193']
SELECT DISTINCT ?n WHERE { ?n property:P702 resource:Q18269193 . ?n rdf:type ontology:Q181394 }
Cystatin-11
The Cystatin-11 is encoded by that nucleic acid sequence
Cystatin-11
action filter_type
action find_reverse
entity Cst11
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'Cst11']
SELECT DISTINCT ?n WHERE { ?n property:encoded_by resource:Cst11 . ?n rdf:type ontology:nutrient }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q21498188 Q18269193
P688
Q863908
USER
Does Cst11 encode that nutrient ?
(Q18269193,P688,Q21498188)
action is_in
entity Q21498188
action find
entity Q18269193
relation P688
['Q18269193', 'P688', 'Q21498188']
ASK WHERE { resource:Q18269193 property:P688 resource:Q21498188 }
Cystatin-11 Cst11
action is_in
entity Cystatin-11
action find
entity Cst11
relation encodes
['Cst11', 'encodes', 'Cystatin-11']
ASK WHERE { resource:Cst11 property:encodes resource:Cystatin-11 }
[]
nucleic acid sequence
SYSTEM
YES
(Q18269193,P688,Q21498188)
action is_in
entity Q21498188
action find
entity Q18269193
relation P688
[ANSWER]
['Q18269193', 'P688', 'Q21498188']
ASK WHERE { resource:Q18269193 property:P688 resource:Q21498188 }
Yes
action is_in
entity Cystatin-11
action find
entity Cst11
relation encodes
['Cst11', 'encodes', 'Cystatin-11']
ASK WHERE { resource:Cst11 property:encodes resource:Cystatin-11 }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21498188
P680
Q2996394
USER
What represents the molecular function of that nutrient ?
action filter_type
action find
entity Q21498188
relation P680
type Q2996394
SELECT DISTINCT ?v WHERE { resource:Q21498188 property:P680 ?v . ?v rdf:type ontology:Q2996394 }
Cystatin-11
action filter_type
action find
entity Cystatin-11
relation molecular function
type biological process
SELECT DISTINCT ?v WHERE { resource:Cystatin-11 property:molecular_function ?v . ?v rdf:type ontology:biological_process }
[]
biological process
Q14860489
SYSTEM
molecular function
Q14860489
action filter_type
action find
entity Q21498188
relation P680
type Q2996394
The [ANSWER] represents the [ANSWER] of that nutrient
SELECT DISTINCT ?v WHERE { resource:Q21498188 property:P680 ?v . ?v rdf:type ontology:Q2996394 }
molecular function
The molecular function represents the molecular function of that nutrient
molecular function
action filter_type
action find
entity Cystatin-11
relation molecular function
type biological process
SELECT DISTINCT ?v WHERE { resource:Cystatin-11 property:molecular_function ?v . ?v rdf:type ontology:biological_process }
[]