Simple Question (Direct)
Simple Question
Q24146055
P680
Q44424
USER
What represents the molecular function of exonuclease IX    ECUMN_3127 ?
(Q24146055,P680,c(Q44424))
action filter_type
action find
entity Q24146055
relation P680
type Q44424
['Q24146055', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:Q44424 . resource:Q24146055 property:P680 ?m }
exonuclease IX    ECUMN_3127
action filter_type
action find
entity exonuclease IX    ECUMN_3127
relation molecular function
type chemical bond
['exonuclease IX    ECUMN_3127', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:chemical_bond . resource:exonuclease_IX____ECUMN_3127 property:molecular_function ?m }
[]
chemical bond
Q14873956 Q13667380 Q14860850
SYSTEM
potassium ion binding, metal ion binding, magnesium ion binding
Q14873956 Q13667380 Q14860850
(Q24146055,P680,c(Q44424))
action filter_type
action find
entity Q24146055
relation P680
type Q44424
[ANSWERS] represent the molecular function of exonuclease IX ECUMN_3127
['Q24146055', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:Q44424 . resource:Q24146055 property:P680 ?m }
potassium ion binding metal ion binding magnesium ion binding
Potassium ion binding, metal ion binding and magnesium ion binding represent the molecular function of exonuclease IX ECUMN_3127
potassium ion binding metal ion binding magnesium ion binding
action filter_type
action find
entity exonuclease IX    ECUMN_3127
relation molecular function
type chemical bond
['exonuclease IX    ECUMN_3127', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:chemical_bond . resource:exonuclease_IX____ECUMN_3127 property:molecular_function ?m }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q24146055
P703
Q631147
USER
Which taxon does exonuclease IX    ECUMN_3127 belong to ?
(Q24146055,P703,c(Q631147))
action filter_type
action find
entity Q24146055
relation P703
type Q631147
['Q24146055', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?c WHERE { ?c rdf:type ontology:Q631147 . resource:Q24146055 property:P703 ?c }
exonuclease IX    ECUMN_3127
action filter_type
action find
entity exonuclease IX    ECUMN_3127
relation found in taxon
type infraspecific name
['exonuclease IX    ECUMN_3127', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?c WHERE { ?c rdf:type ontology:infraspecific_name . resource:exonuclease_IX____ECUMN_3127 property:found_in_taxon ?c }
[]
infraspecific name
Q21102931
SYSTEM
Escherichia coli UMN026
Q21102931
(Q24146055,P703,c(Q631147))
action filter_type
action find
entity Q24146055
relation P703
type Q631147
Exonuclease IX ECUMN _3127 belongs to [ANSWER]
['Q24146055', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?c WHERE { ?c rdf:type ontology:Q631147 . resource:Q24146055 property:P703 ?c }
Escherichia coli UMN026
Exonuclease IX ECUMN _3127 belongs to Escherichia coli UMN026
Escherichia coli UMN026
action filter_type
action find
entity exonuclease IX    ECUMN_3127
relation found in taxon
type infraspecific name
['exonuclease IX    ECUMN_3127', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?c WHERE { ?c rdf:type ontology:infraspecific_name . resource:exonuclease_IX____ECUMN_3127 property:found_in_taxon ?c }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q24146055
P688
Q863908
USER
What is the nucleic acid sequence that is encoded by exonuclease IX    ECUMN_3127 ?
(c(Q863908),P688,Q24146055)
action filter_type
action find_reverse
entity Q24146055
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q24146055']
SELECT DISTINCT ?d WHERE { ?d property:P688 resource:Q24146055 . ?d rdf:type ontology:Q863908 }
exonuclease IX    ECUMN_3127
action filter_type
action find_reverse
entity exonuclease IX    ECUMN_3127
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'exonuclease IX    ECUMN_3127']
SELECT DISTINCT ?d WHERE { ?d property:encodes resource:exonuclease_IX____ECUMN_3127 . ?d rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23139213
SYSTEM
exonuclease IX    ECUMN_3127
Q23139213
(c(Q863908),P688,Q24146055)
action filter_type
action find_reverse
entity Q24146055
relation P688
type Q863908
The nucleic acid sequence that is encoded by exonuclease IX ECUMN _3127 is exonuclease IX ECUMN 3127
[{'concept': 'Q863908'}, 'P688', 'Q24146055']
SELECT DISTINCT ?d WHERE { ?d property:P688 resource:Q24146055 . ?d rdf:type ontology:Q863908 }
exonuclease IX    ECUMN_3127
The nucleic acid sequence that is encoded by exonuclease IX ECUMN _3127 is exonuclease IX ECUMN 3127
exonuclease IX    ECUMN_3127
action filter_type
action find_reverse
entity exonuclease IX    ECUMN_3127
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'exonuclease IX    ECUMN_3127']
SELECT DISTINCT ?d WHERE { ?d property:encodes resource:exonuclease_IX____ECUMN_3127 . ?d rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23139213
P702
Q181394
USER
Which nutrient does that nucleic acid sequence encode ?
(c(Q181394),P702,Q23139213)
action filter_type
action find_reverse
entity Q23139213
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q23139213']
SELECT DISTINCT ?o WHERE { ?o property:P702 resource:Q23139213 . ?o rdf:type ontology:Q181394 }
exonuclease IX    ECUMN_3127
action filter_type
action find_reverse
entity exonuclease IX    ECUMN_3127
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'exonuclease IX    ECUMN_3127']
SELECT DISTINCT ?o WHERE { ?o property:encoded_by resource:exonuclease_IX____ECUMN_3127 . ?o rdf:type ontology:nutrient }
[]
nutrient
Q24146055
SYSTEM
exonuclease IX    ECUMN_3127
Q24146055
(c(Q181394),P702,Q23139213)
action filter_type
action find_reverse
entity Q23139213
relation P702
type Q181394
That nucleic acid sequence encodes the exonuclease IX ECUMN 3127
[{'concept': 'Q181394'}, 'P702', 'Q23139213']
SELECT DISTINCT ?o WHERE { ?o property:P702 resource:Q23139213 . ?o rdf:type ontology:Q181394 }
exonuclease IX    ECUMN_3127
That nucleic acid sequence encodes the exonuclease IX ECUMN 3127
exonuclease IX    ECUMN_3127
action filter_type
action find_reverse
entity exonuclease IX    ECUMN_3127
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'exonuclease IX    ECUMN_3127']
SELECT DISTINCT ?o WHERE { ?o property:encoded_by resource:exonuclease_IX____ECUMN_3127 . ?o rdf:type ontology:nutrient }
[]
Verification (Boolean) (All)
Verification|3 entities, 2 direct, 2(direct) are query entities, subject is indirect
Q24146055 Q22331028 Q23139213
P702
Q863908
USER
Is that nutrient encoded by transmembrane Tfp pilus assembly protein FimV (twitching motility)    lpg1299 and exonuclease IX    ECUMN_3127 ?
(Q24146055,P702,Q22331028) (Q24146055,P702,Q23139213)
action is_in
entity Q24146055
action intersection
action find_reverse
entity Q22331028
relation P702
action find_reverse
entity Q23139213
relation P702
['Q24146055', 'P702', 'Q22331028'] ['Q24146055', 'P702', 'Q23139213']
ASK WHERE { resource:Q24146055 property:P702 resource:Q22331028 . resource:Q24146055 property:P702 resource:Q23139213 }
exonuclease IX    ECUMN_3127 transmembrane Tfp pilus assembly protein FimV (twitching motility)    lpg1299 exonuclease IX    ECUMN_3127
action is_in
entity exonuclease IX    ECUMN_3127
action intersection
action find_reverse
entity transmembrane Tfp pilus assembly protein FimV (twitching motility)    lpg1299
relation encoded by
action find_reverse
entity exonuclease IX    ECUMN_3127
relation encoded by
['exonuclease IX    ECUMN_3127', 'encoded by', 'transmembrane Tfp pilus assembly protein FimV (twitching motility)    lpg1299'] ['exonuclease IX    ECUMN_3127', 'encoded by', 'exonuclease IX    ECUMN_3127']
ASK WHERE { resource:exonuclease_IX____ECUMN_3127 property:encoded_by resource:transmembrane_Tfp_pilus_assembly_protein_FimV_(twitching_motility)____lpg1299 . resource:exonuclease_IX____ECUMN_3127 property:encoded_by resource:exonuclease_IX____ECUMN_3127 }
[]
nucleic acid sequence
SYSTEM
NO and YES respectively
(Q24146055,P702,Q22331028) (Q24146055,P702,Q23139213)
action is_in
entity Q24146055
action intersection
action find_reverse
entity Q22331028
relation P702
action find_reverse
entity Q23139213
relation P702
[ANSWER]
['Q24146055', 'P702', 'Q22331028'] ['Q24146055', 'P702', 'Q23139213']
ASK WHERE { resource:Q24146055 property:P702 resource:Q22331028 . resource:Q24146055 property:P702 resource:Q23139213 }
NO and YES respectively
action is_in
entity exonuclease IX    ECUMN_3127
action intersection
action find_reverse
entity transmembrane Tfp pilus assembly protein FimV (twitching motility)    lpg1299
relation encoded by
action find_reverse
entity exonuclease IX    ECUMN_3127
relation encoded by
['exonuclease IX    ECUMN_3127', 'encoded by', 'transmembrane Tfp pilus assembly protein FimV (twitching motility)    lpg1299'] ['exonuclease IX    ECUMN_3127', 'encoded by', 'exonuclease IX    ECUMN_3127']
ASK WHERE { resource:exonuclease_IX____ECUMN_3127 property:encoded_by resource:transmembrane_Tfp_pilus_assembly_protein_FimV_(twitching_motility)____lpg1299 . resource:exonuclease_IX____ECUMN_3127 property:encoded_by resource:exonuclease_IX____ECUMN_3127 }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q23428963
Q863908
USER
And what about MarR family transcriptional regulator    AHA_3609?
(Q23428963,P702,c(Q863908))
action filter_type
action find
entity Q23428963
relation P702
type Q863908
['Q23428963', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?j WHERE { resource:Q23428963 property:P702 ?j . ?j rdf:type ontology:Q863908 }
MarR family transcriptional regulator    AHA_3609
action filter_type
action find
entity MarR family transcriptional regulator    AHA_3609
relation encoded by
type nucleic acid sequence
['MarR family transcriptional regulator    AHA_3609', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?j WHERE { resource:MarR_family_transcriptional_regulator____AHA_3609 property:encoded_by ?j . ?j rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23115197
SYSTEM
MarR family transcriptional regulator    AHA_3609
Q23115197
(Q23428963,P702,c(Q863908))
action filter_type
action find
entity Q23428963
relation P702
type Q863908
[ANSWER]
['Q23428963', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?j WHERE { resource:Q23428963 property:P702 ?j . ?j rdf:type ontology:Q863908 }
MarR family transcriptional regulator    AHA_3609
MarR family transcriptional regulator    AHA_3609
action filter_type
action find
entity MarR family transcriptional regulator    AHA_3609
relation encoded by
type nucleic acid sequence
['MarR family transcriptional regulator    AHA_3609', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?j WHERE { resource:MarR_family_transcriptional_regulator____AHA_3609 property:encoded_by ?j . ?j rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q23115197 Q23428963
P688
Q181394
USER
Does MarR family transcriptional regulator    AHA_3609 encode MarR family transcriptional regulator    AHA_3609 ?
(Q23115197,P688,Q23428963)
action is_in
entity Q23428963
action find
entity Q23115197
relation P688
['Q23115197', 'P688', 'Q23428963']
ASK WHERE { resource:Q23115197 property:P688 resource:Q23428963 }
MarR family transcriptional regulator    AHA_3609 MarR family transcriptional regulator    AHA_3609
action is_in
entity MarR family transcriptional regulator    AHA_3609
action find
entity MarR family transcriptional regulator    AHA_3609
relation encodes
['MarR family transcriptional regulator    AHA_3609', 'encodes', 'MarR family transcriptional regulator    AHA_3609']
ASK WHERE { resource:MarR_family_transcriptional_regulator____AHA_3609 property:encodes resource:MarR_family_transcriptional_regulator____AHA_3609 }
[]
nutrient
SYSTEM
YES
(Q23115197,P688,Q23428963)
action is_in
entity Q23428963
action find
entity Q23115197
relation P688
[ANSWER]
['Q23115197', 'P688', 'Q23428963']
ASK WHERE { resource:Q23115197 property:P688 resource:Q23428963 }
Yes
action is_in
entity MarR family transcriptional regulator    AHA_3609
action find
entity MarR family transcriptional regulator    AHA_3609
relation encodes
['MarR family transcriptional regulator    AHA_3609', 'encodes', 'MarR family transcriptional regulator    AHA_3609']
ASK WHERE { resource:MarR_family_transcriptional_regulator____AHA_3609 property:encodes resource:MarR_family_transcriptional_regulator____AHA_3609 }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23233140 Q23115197
P688
Q181394
USER
Which nutrients are MarR family transcriptional regulator    AHA_3609 or hypothetical protein    SPy_0949 an encoding of ?
OR((Q23115197,P688,c(Q181394)), (Q23233140,P688,c(Q181394)))
action filter_type
action union
action find
entity Q23115197
relation P688
action find
entity Q23233140
relation P688
type Q181394
{'OR': [['Q23115197', 'P688', {'concept': 'Q181394'}], ['Q23233140', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?f WHERE { { { resource:Q23115197 property:P688 ?f } UNION { resource:Q23233140 property:P688 ?f } } . ?f rdf:type ontology:Q181394 }
hypothetical protein    SPy_0949 MarR family transcriptional regulator    AHA_3609
action filter_type
action union
action find
entity MarR family transcriptional regulator    AHA_3609
relation encodes
action find
entity hypothetical protein    SPy_0949
relation encodes
type nutrient
{'OR': [['MarR family transcriptional regulator    AHA_3609', 'encodes', {'concept': 'nutrient'}], ['hypothetical protein    SPy_0949', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?f WHERE { { { resource:MarR_family_transcriptional_regulator____AHA_3609 property:encodes ?f } UNION { resource:hypothetical_protein____SPy_0949 property:encodes ?f } } . ?f rdf:type ontology:nutrient }
[]
nutrient
Q23428963 Q23496337
SYSTEM
MarR family transcriptional regulator    AHA_3609, hypothetical protein    SPy_0949
Q23428963 Q23496337
OR((Q23115197,P688,c(Q181394)), (Q23233140,P688,c(Q181394)))
action filter_type
action union
action find
entity Q23115197
relation P688
action find
entity Q23233140
relation P688
type Q181394
[ANSWERS]
{'OR': [['Q23115197', 'P688', {'concept': 'Q181394'}], ['Q23233140', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?f WHERE { { { resource:Q23115197 property:P688 ?f } UNION { resource:Q23233140 property:P688 ?f } } . ?f rdf:type ontology:Q181394 }
MarR family transcriptional regulator    AHA_3609 hypothetical protein    SPy_0949
MarR family transcriptional regulator AHA 3609 and hypothetical protein SPy 0949 are MarR family transcriptional regulator AHA_3609 or hypothetical protein SPy_0949 an encoding of
MarR family transcriptional regulator    AHA_3609 hypothetical protein    SPy_0949
action filter_type
action union
action find
entity MarR family transcriptional regulator    AHA_3609
relation encodes
action find
entity hypothetical protein    SPy_0949
relation encodes
type nutrient
{'OR': [['MarR family transcriptional regulator    AHA_3609', 'encodes', {'concept': 'nutrient'}], ['hypothetical protein    SPy_0949', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?f WHERE { { { resource:MarR_family_transcriptional_regulator____AHA_3609 property:encodes ?f } UNION { resource:hypothetical_protein____SPy_0949 property:encodes ?f } } . ?f rdf:type ontology:nutrient }
[]