Simple Question (Direct)
Simple Question
Q21106459
P681
Q15989253
USER
Which is the cell component of Sorting nexin-3 ?
(Q21106459,P681,c(Q15989253))
action filter_type
action find
entity Q21106459
relation P681
type Q15989253
['Q21106459', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:Q15989253 . resource:Q21106459 property:P681 ?j }
Sorting nexin-3
action filter_type
action find
entity Sorting nexin-3
relation cell component
type part
['Sorting nexin-3', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:part . resource:Sorting_nexin-3 property:cell_component ?j }
[]
part
Q79899
SYSTEM
cytoplasm
Q79899
(Q21106459,P681,c(Q15989253))
action filter_type
action find
entity Q21106459
relation P681
type Q15989253
[ANSWER] is the cell component of Sorting nexin-3
['Q21106459', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:Q15989253 . resource:Q21106459 property:P681 ?j }
cytoplasm
Cytoplasm is the cell component of Sorting nexin-3
cytoplasm
action filter_type
action find
entity Sorting nexin-3
relation cell component
type part
['Sorting nexin-3', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:part . resource:Sorting_nexin-3 property:cell_component ?j }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21106459
P688
Q863908
USER
Which nucleic acid sequence encodes Sorting nexin-3 ?
(c(Q863908),P688,Q21106459)
action filter_type
action find_reverse
entity Q21106459
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q21106459']
SELECT DISTINCT ?m WHERE { ?m property:P688 resource:Q21106459 . ?m rdf:type ontology:Q863908 }
Sorting nexin-3
action filter_type
action find_reverse
entity Sorting nexin-3
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Sorting nexin-3']
SELECT DISTINCT ?m WHERE { ?m property:encodes resource:Sorting_nexin-3 . ?m rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18033246
SYSTEM
SNX3
Q18033246
(c(Q863908),P688,Q21106459)
action filter_type
action find_reverse
entity Q21106459
relation P688
type Q863908
[ANSWER] encodes sorting nexin-3
[{'concept': 'Q863908'}, 'P688', 'Q21106459']
SELECT DISTINCT ?m WHERE { ?m property:P688 resource:Q21106459 . ?m rdf:type ontology:Q863908 }
SNX3
SNX3 encodes sorting nexin-3
SNX3
action filter_type
action find_reverse
entity Sorting nexin-3
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Sorting nexin-3']
SELECT DISTINCT ?m WHERE { ?m property:encodes resource:Sorting_nexin-3 . ?m rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18033246
P702
Q181394
USER
What is the gene that is encoded by that nucleic acid sequence ?
(c(Q181394),P702,Q18033246)
action filter_type
action find_reverse
entity Q18033246
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q18033246']
SELECT DISTINCT ?e WHERE { ?e property:P702 resource:Q18033246 . ?e rdf:type ontology:Q181394 }
SNX3
action filter_type
action find_reverse
entity SNX3
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'SNX3']
SELECT DISTINCT ?e WHERE { ?e property:encoded_by resource:SNX3 . ?e rdf:type ontology:nutrient }
[]
nutrient
Q21106459
SYSTEM
Sorting nexin-3
Q21106459
(c(Q181394),P702,Q18033246)
action filter_type
action find_reverse
entity Q18033246
relation P702
type Q181394
The gene that is encoded by that nucleic acid sequence is [ANSWER]
[{'concept': 'Q181394'}, 'P702', 'Q18033246']
SELECT DISTINCT ?e WHERE { ?e property:P702 resource:Q18033246 . ?e rdf:type ontology:Q181394 }
Sorting nexin-3
The gene that is encoded by that nucleic acid sequence is Sorting nexin-3
Sorting nexin-3
action filter_type
action find_reverse
entity SNX3
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'SNX3']
SELECT DISTINCT ?e WHERE { ?e property:encoded_by resource:SNX3 . ?e rdf:type ontology:nutrient }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18033246
P684
Q863908
USER
Which nucleic acid sequence is that one an orthlogous gene of ?
(c(Q863908),P684,Q21106459)
action filter_type
action find
entity Q18033246
relation P684
type Q863908
[{'concept': 'Q863908'}, 'P684', 'Q21106459']
SELECT DISTINCT ?z WHERE { resource:Q18033246 property:P684 ?z . ?z rdf:type ontology:Q863908 }
SNX3
action filter_type
action find
entity SNX3
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'Sorting nexin-3']
SELECT DISTINCT ?z WHERE { resource:SNX3 property:ortholog ?z . ?z rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18258077
SYSTEM
Snx3
Q18258077
(c(Q863908),P684,Q21106459)
action filter_type
action find
entity Q18033246
relation P684
type Q863908
[ANSWER] is that one an orthlogous gene of
[{'concept': 'Q863908'}, 'P684', 'Q21106459']
SELECT DISTINCT ?z WHERE { resource:Q18033246 property:P684 ?z . ?z rdf:type ontology:Q863908 }
Snx3
Snx3 is that one an orthlogous gene of
Snx3
action filter_type
action find
entity SNX3
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'Sorting nexin-3']
SELECT DISTINCT ?z WHERE { resource:SNX3 property:ortholog ?z . ?z rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, subject is indirect
Q18258077 Q21991684
P688
Q181394
USER
Is that nucleic acid sequence an encoding of Sorting nexin-3 ?
(Q18258077,P688,Q21991684)
action is_in
entity Q21991684
action find
entity Q18258077
relation P688
['Q18258077', 'P688', 'Q21991684']
ASK WHERE { resource:Q18258077 property:P688 resource:Q21991684 }
Snx3 Sorting nexin-3
action is_in
entity Sorting nexin-3
action find
entity Snx3
relation encodes
['Snx3', 'encodes', 'Sorting nexin-3']
ASK WHERE { resource:Snx3 property:encodes resource:Sorting_nexin-3 }
[]
nutrient
SYSTEM
YES
(Q18258077,P688,Q21991684)
action is_in
entity Q21991684
action find
entity Q18258077
relation P688
[ANSWER]
['Q18258077', 'P688', 'Q21991684']
ASK WHERE { resource:Q18258077 property:P688 resource:Q21991684 }
Yes
action is_in
entity Sorting nexin-3
action find
entity Snx3
relation encodes
['Snx3', 'encodes', 'Sorting nexin-3']
ASK WHERE { resource:Snx3 property:encodes resource:Sorting_nexin-3 }
[]
Verification (Boolean) (All)
Verification|3 entities, all direct, 2 are query entities
Q18033246 Q21605361 Q24130025
P688
Q181394
USER
Does SNX3 encode 50S ribosomal protein L19    BB_0699 and hypothetical protein    EAE_21060 ?
(Q18033246,P688,Q21605361) (Q18033246,P688,Q24130025)
action is_in
entity Q18033246
action intersection
action find_reverse
entity Q21605361
relation P688
action find_reverse
entity Q24130025
relation P688
['Q18033246', 'P688', 'Q21605361'] ['Q18033246', 'P688', 'Q24130025']
ASK WHERE { resource:Q18033246 property:P688 resource:Q21605361 . resource:Q18033246 property:P688 resource:Q24130025 }
SNX3 50S ribosomal protein L19    BB_0699 hypothetical protein    EAE_21060
action is_in
entity SNX3
action intersection
action find_reverse
entity 50S ribosomal protein L19    BB_0699
relation encodes
action find_reverse
entity hypothetical protein    EAE_21060
relation encodes
['SNX3', 'encodes', '50S ribosomal protein L19    BB_0699'] ['SNX3', 'encodes', 'hypothetical protein    EAE_21060']
ASK WHERE { resource:SNX3 property:encodes resource:50S_ribosomal_protein_L19____BB_0699 . resource:SNX3 property:encodes resource:hypothetical_protein____EAE_21060 }
[]
nutrient
SYSTEM
NO
(Q18033246,P688,Q21605361) (Q18033246,P688,Q24130025)
action is_in
entity Q18033246
action intersection
action find_reverse
entity Q21605361
relation P688
action find_reverse
entity Q24130025
relation P688
[ANSWER]
['Q18033246', 'P688', 'Q21605361'] ['Q18033246', 'P688', 'Q24130025']
ASK WHERE { resource:Q18033246 property:P688 resource:Q21605361 . resource:Q18033246 property:P688 resource:Q24130025 }
No
action is_in
entity SNX3
action intersection
action find_reverse
entity 50S ribosomal protein L19    BB_0699
relation encodes
action find_reverse
entity hypothetical protein    EAE_21060
relation encodes
['SNX3', 'encodes', '50S ribosomal protein L19    BB_0699'] ['SNX3', 'encodes', 'hypothetical protein    EAE_21060']
ASK WHERE { resource:SNX3 property:encodes resource:50S_ribosomal_protein_L19____BB_0699 . resource:SNX3 property:encodes resource:hypothetical_protein____EAE_21060 }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q21106459 Q18033246
P702
Q863908
USER
Does SNX3 encode Sorting nexin-3 ?
(Q21106459,P702,Q18033246)
action is_in
entity Q18033246
action find
entity Q21106459
relation P702
['Q21106459', 'P702', 'Q18033246']
ASK WHERE { resource:Q21106459 property:P702 resource:Q18033246 }
Sorting nexin-3 SNX3
action is_in
entity SNX3
action find
entity Sorting nexin-3
relation encoded by
['Sorting nexin-3', 'encoded by', 'SNX3']
ASK WHERE { resource:Sorting_nexin-3 property:encoded_by resource:SNX3 }
[]
nucleic acid sequence
SYSTEM
YES
(Q21106459,P702,Q18033246)
action is_in
entity Q18033246
action find
entity Q21106459
relation P702
[ANSWER]
['Q21106459', 'P702', 'Q18033246']
ASK WHERE { resource:Q21106459 property:P702 resource:Q18033246 }
Yes
action is_in
entity SNX3
action find
entity Sorting nexin-3
relation encoded by
['Sorting nexin-3', 'encoded by', 'SNX3']
ASK WHERE { resource:Sorting_nexin-3 property:encoded_by resource:SNX3 }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Mult. entity type
Q21106459 Q23257162
P688
Q863908
USER
How many nucleic acid sequences encode Sorting nexin-3 or amidase    Mb2912c ?
(c(Q863908),P688,Q21106459) (c(Q863908),P688,Q23257162)
action count
action union
action filter_type
action find_reverse
entity Q21106459
relation P688
type Q863908
action filter_type
action find_reverse
entity Q23257162
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q21106459'] [{'concept': 'Q863908'}, 'P688', 'Q23257162']
SELECT DISTINCT ( COUNT ( ?f ) AS ?w ) WHERE { { ?f property:P688 resource:Q21106459 . ?f rdf:type ontology:Q863908 } UNION { ?f property:P688 resource:Q23257162 . ?f rdf:type ontology:Q863908 } }
Sorting nexin-3 amidase    Mb2912c
action count
action union
action filter_type
action find_reverse
entity Sorting nexin-3
relation encodes
type nucleic acid sequence
action filter_type
action find_reverse
entity amidase    Mb2912c
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Sorting nexin-3'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'amidase    Mb2912c']
SELECT DISTINCT ( COUNT ( ?f ) AS ?w ) WHERE { { ?f property:encodes resource:Sorting_nexin-3 . ?f rdf:type ontology:nucleic_acid_sequence } UNION { ?f property:encodes resource:amidase____Mb2912c . ?f rdf:type ontology:nucleic_acid_sequence } }
[]
nucleic acid sequence
SYSTEM
2
Q18033246 Q23257162
(c(Q863908),P688,Q21106459) (c(Q863908),P688,Q23257162)
action count
action union
action filter_type
action find_reverse
entity Q21106459
relation P688
type Q863908
action filter_type
action find_reverse
entity Q23257162
relation P688
type Q863908
[ANSWER]
[{'concept': 'Q863908'}, 'P688', 'Q21106459'] [{'concept': 'Q863908'}, 'P688', 'Q23257162']
SELECT DISTINCT ( COUNT ( ?f ) AS ?w ) WHERE { { ?f property:P688 resource:Q21106459 . ?f rdf:type ontology:Q863908 } UNION { ?f property:P688 resource:Q23257162 . ?f rdf:type ontology:Q863908 } }
SNX3 amidase    Mb2912c
2
action count
action union
action filter_type
action find_reverse
entity Sorting nexin-3
relation encodes
type nucleic acid sequence
action filter_type
action find_reverse
entity amidase    Mb2912c
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Sorting nexin-3'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'amidase    Mb2912c']
SELECT DISTINCT ( COUNT ( ?f ) AS ?w ) WHERE { { ?f property:encodes resource:Sorting_nexin-3 . ?f rdf:type ontology:nucleic_acid_sequence } UNION { ?f property:encodes resource:amidase____Mb2912c . ?f rdf:type ontology:nucleic_acid_sequence } }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21106459
P703
Q16521
USER
Which taxon is Sorting nexin-3 found in ?
(Q21106459,P703,c(Q16521))
action filter_type
action find
entity Q21106459
relation P703
type Q16521
['Q21106459', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?m WHERE { resource:Q21106459 property:P703 ?m . ?m rdf:type ontology:Q16521 }
Sorting nexin-3
action filter_type
action find
entity Sorting nexin-3
relation found in taxon
type taxon
['Sorting nexin-3', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?m WHERE { resource:Sorting_nexin-3 property:found_in_taxon ?m . ?m rdf:type ontology:taxon }
[]
taxon
Q15978631
SYSTEM
Homo sapiens
Q15978631
(Q21106459,P703,c(Q16521))
action filter_type
action find
entity Q21106459
relation P703
type Q16521
Sorting nexin-3 is found in [ANSWER]
['Q21106459', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?m WHERE { resource:Q21106459 property:P703 ?m . ?m rdf:type ontology:Q16521 }
Homo sapiens
Sorting nexin-3 is found in Homo sapiens
Homo sapiens
action filter_type
action find
entity Sorting nexin-3
relation found in taxon
type taxon
['Sorting nexin-3', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?m WHERE { resource:Sorting_nexin-3 property:found_in_taxon ?m . ?m rdf:type ontology:taxon }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P361
Q15989253 Q234460 Q5058355
USER
How many parts are approximately 4 texts and cellular components a part of ?
(c(Q234460)|c(Q5058355),P361,c(Q15989253))
action count
action approx
action union
action find_reverse_tuple_counts
relation P361
type Q15989253
type Q234460
action find_reverse_tuple_counts
relation P361
type Q15989253
type Q5058355
value 4
[[{'concept': 'Q234460'}, {'concept': 'Q5058355'}], 'P361', {'concept': 'Q15989253'}]
SELECT DISTINCT ( COUNT ( ?c ) AS ?d ) WHERE { FILTER ( ?w = 4 ) . { SELECT DISTINCT ?c ( COUNT ( ?a ) AS ?w ) WHERE { ?a rdf:type ?m . VALUES ( ?m ) { ( ontology:Q234460 ) ( ontology:Q5058355 ) } } GROUP BY ?c } }
action count
action approx
action union
action find_reverse_tuple_counts
relation part of
type part
type text
action find_reverse_tuple_counts
relation part of
type part
type cellular component
value 4
[[{'concept': 'text'}, {'concept': 'cellular component'}], 'part of', {'concept': 'part'}]
SELECT DISTINCT ( COUNT ( ?c ) AS ?d ) WHERE { FILTER ( ?w = 4 ) . { SELECT DISTINCT ?c ( COUNT ( ?a ) AS ?w ) WHERE { ?a rdf:type ?m . VALUES ( ?m ) { ( ontology:text ) ( ontology:cellular_component ) } } GROUP BY ?c } }
[]
part text cellular component
SYSTEM
2
Q187181 Q14645596
(c(Q234460)|c(Q5058355),P361,c(Q15989253))
action count
action approx
action union
action find_reverse_tuple_counts
relation P361
type Q15989253
type Q234460
action find_reverse_tuple_counts
relation P361
type Q15989253
type Q5058355
value 4
[ANSWER]
[[{'concept': 'Q234460'}, {'concept': 'Q5058355'}], 'P361', {'concept': 'Q15989253'}]
SELECT DISTINCT ( COUNT ( ?c ) AS ?d ) WHERE { FILTER ( ?w = 4 ) . { SELECT DISTINCT ?c ( COUNT ( ?a ) AS ?w ) WHERE { ?a rdf:type ?m . VALUES ( ?m ) { ( ontology:Q234460 ) ( ontology:Q5058355 ) } } GROUP BY ?c } }
synapse extracellular region
2
action count
action approx
action union
action find_reverse_tuple_counts
relation part of
type part
type text
action find_reverse_tuple_counts
relation part of
type part
type cellular component
value 4
[[{'concept': 'text'}, {'concept': 'cellular component'}], 'part of', {'concept': 'part'}]
SELECT DISTINCT ( COUNT ( ?c ) AS ?d ) WHERE { FILTER ( ?w = 4 ) . { SELECT DISTINCT ?c ( COUNT ( ?a ) AS ?w ) WHERE { ?a rdf:type ?m . VALUES ( ?m ) { ( ontology:text ) ( ontology:cellular_component ) } } GROUP BY ?c } }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q15978631
P427
Q3343211
USER
What is the taxonomic type of Homo sapiens ?
(Q15978631,P427,c(Q3343211))
action filter_type
action find
entity Q15978631
relation P427
type Q3343211
['Q15978631', 'P427', {'concept': 'Q3343211'}]
SELECT DISTINCT ?b WHERE { resource:Q15978631 property:P427 ?b . ?b rdf:type ontology:Q3343211 }
Homo sapiens
action filter_type
action find
entity Homo sapiens
relation taxonomic type
type zoological nomenclature
['Homo sapiens', 'taxonomic type', {'concept': 'zoological nomenclature'}]
SELECT DISTINCT ?b WHERE { resource:Homo_sapiens property:taxonomic_type ?b . ?b rdf:type ontology:zoological_nomenclature }
[]
zoological nomenclature
Q1043
SYSTEM
Carl Linnaeus
Q1043
(Q15978631,P427,c(Q3343211))
action filter_type
action find
entity Q15978631
relation P427
type Q3343211
The taxonomic type of Homo sapiens is named [ANSWER]
['Q15978631', 'P427', {'concept': 'Q3343211'}]
SELECT DISTINCT ?b WHERE { resource:Q15978631 property:P427 ?b . ?b rdf:type ontology:Q3343211 }
Carl Linnaeus
The taxonomic type of Homo sapiens is named Carl Linnaeus
Carl Linnaeus
action filter_type
action find
entity Homo sapiens
relation taxonomic type
type zoological nomenclature
['Homo sapiens', 'taxonomic type', {'concept': 'zoological nomenclature'}]
SELECT DISTINCT ?b WHERE { resource:Homo_sapiens property:taxonomic_type ?b . ?b rdf:type ontology:zoological_nomenclature }
[]