Simple Question (Direct)
Simple Question
Q23461075
P702
Q863908
USER
What is the gene that encodes adenine specific DNA methyltransferase    DVU2175 ?
(Q23461075,P702,c(Q863908))
action filter_type
action find
entity Q23461075
relation P702
type Q863908
['Q23461075', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?y WHERE { ?y rdf:type ontology:Q863908 . resource:Q23461075 property:P702 ?y }
adenine specific DNA methyltransferase    DVU2175
action filter_type
action find
entity adenine specific DNA methyltransferase    DVU2175
relation encoded by
type nucleic acid sequence
['adenine specific DNA methyltransferase    DVU2175', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?y WHERE { ?y rdf:type ontology:nucleic_acid_sequence . resource:adenine_specific_DNA_methyltransferase____DVU2175 property:encoded_by ?y }
[]
nucleic acid sequence
Q23323374
SYSTEM
adenine specific DNA methyltransferase    DVU2175
Q23323374
(Q23461075,P702,c(Q863908))
action filter_type
action find
entity Q23461075
relation P702
type Q863908
The gene that encodes adenine specific DNA methyltransferase DVU2175 is codes adenine specific DNA methyltransferase DVU2175
['Q23461075', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?y WHERE { ?y rdf:type ontology:Q863908 . resource:Q23461075 property:P702 ?y }
adenine specific DNA methyltransferase    DVU2175
The gene that encodes adenine specific DNA methyltransferase DVU2175 is codes adenine specific DNA methyltransferase DVU2175
adenine specific DNA methyltransferase    DVU2175
action filter_type
action find
entity adenine specific DNA methyltransferase    DVU2175
relation encoded by
type nucleic acid sequence
['adenine specific DNA methyltransferase    DVU2175', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?y WHERE { ?y rdf:type ontology:nucleic_acid_sequence . resource:adenine_specific_DNA_methyltransferase____DVU2175 property:encoded_by ?y }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23461075
P682
Q2996394
USER
What is the biological process that adenine specific DNA methyltransferase    DVU2175 is involved in ?
(Q23461075,P682,c(Q2996394))
action filter_type
action find
entity Q23461075
relation P682
type Q2996394
['Q23461075', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?n WHERE { resource:Q23461075 property:P682 ?n . ?n rdf:type ontology:Q2996394 }
adenine specific DNA methyltransferase    DVU2175
action filter_type
action find
entity adenine specific DNA methyltransferase    DVU2175
relation biological process
type biological process
['adenine specific DNA methyltransferase    DVU2175', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?n WHERE { resource:adenine_specific_DNA_methyltransferase____DVU2175 property:biological_process ?n . ?n rdf:type ontology:biological_process }
[]
biological process
Q518328
SYSTEM
methylation
Q518328
(Q23461075,P682,c(Q2996394))
action filter_type
action find
entity Q23461075
relation P682
type Q2996394
The biological process that adenine specific DNA methyltransferase DVU2175 is involved in is DNA [ANSWER]
['Q23461075', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?n WHERE { resource:Q23461075 property:P682 ?n . ?n rdf:type ontology:Q2996394 }
methylation
The biological process that adenine specific DNA methyltransferase DVU2175 is involved in is DNA methylation
methylation
action filter_type
action find
entity adenine specific DNA methyltransferase    DVU2175
relation biological process
type biological process
['adenine specific DNA methyltransferase    DVU2175', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?n WHERE { resource:adenine_specific_DNA_methyltransferase____DVU2175 property:biological_process ?n . ?n rdf:type ontology:biological_process }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q21108104
Q2996394
USER
And how about HLA class I histocompatibility antigen, A-34 alpha chain?
(Q21108104,P682,c(Q2996394))
action filter_type
action find
entity Q21108104
relation P682
type Q2996394
['Q21108104', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?k WHERE { resource:Q21108104 property:P682 ?k . ?k rdf:type ontology:Q2996394 }
HLA class I histocompatibility antigen, A-34 alpha chain
action filter_type
action find
entity HLA class I histocompatibility antigen, A-34 alpha chain
relation biological process
type biological process
['HLA class I histocompatibility antigen, A-34 alpha chain', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?k WHERE { resource:HLA_class_I_histocompatibility_antigen,_A-34_alpha_chain property:biological_process ?k . ?k rdf:type ontology:biological_process }
[]
biological process
Q14876119 Q1612119
SYSTEM
antigen processing and presentation, immune response
Q14876119 Q1612119
(Q21108104,P682,c(Q2996394))
action filter_type
action find
entity Q21108104
relation P682
type Q2996394
[ANSWERS]
['Q21108104', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?k WHERE { resource:Q21108104 property:P682 ?k . ?k rdf:type ontology:Q2996394 }
antigen processing and presentation immune response
antigen processing and presentation immune response
action filter_type
action find
entity HLA class I histocompatibility antigen, A-34 alpha chain
relation biological process
type biological process
['HLA class I histocompatibility antigen, A-34 alpha chain', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?k WHERE { resource:HLA_class_I_histocompatibility_antigen,_A-34_alpha_chain property:biological_process ?k . ?k rdf:type ontology:biological_process }
[]
Verification (Boolean) (All)
Verification|one entity, multiple entities (as object) referred indirectly
Q23435300
P682
Q181394
USER
Are hemagglutinin/protease    VCA0865 involved in those biological processes ?
(Q23435300,P682,Q14876119) (Q23435300,P682,Q1612119)
action is_in
entity prev_answer
action find
entity Q23435300
relation P682
['Q23435300', 'P682', 'Q14876119'] ['Q23435300', 'P682', 'Q1612119']
ASK WHERE { resource:Q23435300 property:P682 ?s . VALUES ( ?s ) { ( resource:Q14876119 ) ( resource:Q1612119 ) } }
hemagglutinin/protease    VCA0865
action is_in
entity prev_answer
action find
entity hemagglutinin/protease    VCA0865
relation biological process
['hemagglutinin/protease    VCA0865', 'biological process', 'antigen processing and presentation'] ['hemagglutinin/protease    VCA0865', 'biological process', 'immune response']
ASK WHERE { resource:hemagglutinin/protease____VCA0865 property:biological_process ?s . VALUES ( ?s ) { ( resource:antigen_processing_and_presentation ) ( resource:immune_response ) } }
[]
nutrient
SYSTEM
NO
(Q23435300,P682,Q14876119) (Q23435300,P682,Q1612119)
action is_in
entity prev_answer
action find
entity Q23435300
relation P682
[ANSWER]
['Q23435300', 'P682', 'Q14876119'] ['Q23435300', 'P682', 'Q1612119']
ASK WHERE { resource:Q23435300 property:P682 ?s . VALUES ( ?s ) { ( resource:Q14876119 ) ( resource:Q1612119 ) } }
No
action is_in
entity prev_answer
action find
entity hemagglutinin/protease    VCA0865
relation biological process
['hemagglutinin/protease    VCA0865', 'biological process', 'antigen processing and presentation'] ['hemagglutinin/protease    VCA0865', 'biological process', 'immune response']
ASK WHERE { resource:hemagglutinin/protease____VCA0865 property:biological_process ?s . VALUES ( ?s ) { ( resource:antigen_processing_and_presentation ) ( resource:immune_response ) } }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23461075
P688
Q863908
USER
What is the nucleic acid sequence that is encoded by adenine specific DNA methyltransferase    DVU2175 ?
(c(Q863908),P688,Q23461075)
action filter_type
action find_reverse
entity Q23461075
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q23461075']
SELECT DISTINCT ?i WHERE { ?i rdf:type ontology:Q863908 . ?i property:P688 resource:Q23461075 }
adenine specific DNA methyltransferase    DVU2175
action filter_type
action find_reverse
entity adenine specific DNA methyltransferase    DVU2175
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'adenine specific DNA methyltransferase    DVU2175']
SELECT DISTINCT ?i WHERE { ?i rdf:type ontology:nucleic_acid_sequence . ?i property:encodes resource:adenine_specific_DNA_methyltransferase____DVU2175 }
[]
nucleic acid sequence
Q23323374
SYSTEM
adenine specific DNA methyltransferase    DVU2175
Q23323374
(c(Q863908),P688,Q23461075)
action filter_type
action find_reverse
entity Q23461075
relation P688
type Q863908
The nucleic acid sequence that is encoded by adenine specific DNA methyltransferase DVU2175 is by adenine specific DNA methyltransferase DVU2175
[{'concept': 'Q863908'}, 'P688', 'Q23461075']
SELECT DISTINCT ?i WHERE { ?i rdf:type ontology:Q863908 . ?i property:P688 resource:Q23461075 }
adenine specific DNA methyltransferase    DVU2175
The nucleic acid sequence that is encoded by adenine specific DNA methyltransferase DVU2175 is by adenine specific DNA methyltransferase DVU2175
adenine specific DNA methyltransferase    DVU2175
action filter_type
action find_reverse
entity adenine specific DNA methyltransferase    DVU2175
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'adenine specific DNA methyltransferase    DVU2175']
SELECT DISTINCT ?i WHERE { ?i rdf:type ontology:nucleic_acid_sequence . ?i property:encodes resource:adenine_specific_DNA_methyltransferase____DVU2175 }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23461075
P703
Q16521
USER
Where is adenine specific DNA methyltransferase    DVU2175 found ?
(Q23461075,P703,c(Q16521))
action filter_type
action find
entity Q23461075
relation P703
type Q16521
['Q23461075', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?h WHERE { resource:Q23461075 property:P703 ?h . ?h rdf:type ontology:Q16521 }
adenine specific DNA methyltransferase    DVU2175
action filter_type
action find
entity adenine specific DNA methyltransferase    DVU2175
relation found in taxon
type taxon
['adenine specific DNA methyltransferase    DVU2175', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?h WHERE { resource:adenine_specific_DNA_methyltransferase____DVU2175 property:found_in_taxon ?h . ?h rdf:type ontology:taxon }
[]
taxon
Q21383317
SYSTEM
Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Q21383317
(Q23461075,P703,c(Q16521))
action filter_type
action find
entity Q23461075
relation P703
type Q16521
Adenine specific DNA methyltransferase DVU2175 is found in [ANSWER]
['Q23461075', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?h WHERE { resource:Q23461075 property:P703 ?h . ?h rdf:type ontology:Q16521 }
Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Adenine specific DNA methyltransferase DVU2175 is found in Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
action filter_type
action find
entity adenine specific DNA methyltransferase    DVU2175
relation found in taxon
type taxon
['adenine specific DNA methyltransferase    DVU2175', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?h WHERE { resource:adenine_specific_DNA_methyltransferase____DVU2175 property:found_in_taxon ?h . ?h rdf:type ontology:taxon }
[]
Logical Reasoning (All)
Logical|Intersection|Multiple_Relation
Q220599 Q14876119
P682 P681
Q181394
USER
Which nutrients are involved in antigen processing and presentation and are cytosol a cell component of ?
AND((c(Q181394),P682,Q14876119), (c(Q181394),P681,Q220599))
action filter_type
action intersection
action find_reverse
entity Q14876119
relation P682
action find_reverse
entity Q220599
relation P681
type Q181394
{'AND': [[{'concept': 'Q181394'}, 'P682', 'Q14876119'], [{'concept': 'Q181394'}, 'P681', 'Q220599']]}
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:Q181394 . ?s property:P682 resource:Q14876119 . ?s property:P681 resource:Q220599 }
cytosol antigen processing and presentation
action filter_type
action intersection
action find_reverse
entity antigen processing and presentation
relation biological process
action find_reverse
entity cytosol
relation cell component
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'biological process', 'antigen processing and presentation'], [{'concept': 'nutrient'}, 'cell component', 'cytosol']]}
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:nutrient . ?s property:biological_process resource:antigen_processing_and_presentation . ?s property:cell_component resource:cytosol }
[]
nutrient
Q21987437 Q21497821 Q21135247 Q21984761 Q21989973 Q21113309 Q21119744 Q21989977 Q21106139 Q21989992
SYSTEM
Some of them are Proteasome subunit beta type-9, Ig gamma-2A chain C region, membrane-bound form, Ras-related protein Rab-3C, Ig mu chain C region, Ras-related protein Rab-4A, Ras-related protein Rab-6A, Proteasome subunit beta type-8, Ras-related protein Rab-3C, Ras-related protein Rab-4A, Ras-related protein Rab-3B
Q21493956 Q21984761 Q21987437 Q21106139 Q21108330 Q21494604 Q21497821 Q21989992 Q21100854 Q21135210 Q21987435 Q21989973 Q21119744 Q21987950 Q21989977 Q21135247 Q21113309
AND((c(Q181394),P682,Q14876119), (c(Q181394),P681,Q220599))
action filter_type
action intersection
action find_reverse
entity Q14876119
relation P682
action find_reverse
entity Q220599
relation P681
type Q181394
[ANSWERS] are involved in antigen processing and presentation and are cytosol a cell component of
{'AND': [[{'concept': 'Q181394'}, 'P682', 'Q14876119'], [{'concept': 'Q181394'}, 'P681', 'Q220599']]}
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:Q181394 . ?s property:P682 resource:Q14876119 . ?s property:P681 resource:Q220599 }
Ras-related protein Rab-6A Ig mu chain C region Proteasome subunit beta type-9 Ras-related protein Rab-4A Pro-cathepsin H Transcription factor RelB Ig gamma-2A chain C region, membrane-bound form Ras-related protein Rab-3B Transcription factor RelB Ras-related protein Rab-3B Proteasome subunit beta type-8 Ras-related protein Rab-4A Proteasome subunit beta type-8 Ras-related protein Rab-27A Ras-related protein Rab-3C Ras-related protein Rab-3C Ras-related protein Rab-6A
Proteasome subunit beta type-9, Ig gamma-2A chain C region, membrane-bound form, Ras-related protein Rab-3C, Ig mu chain C region, Ras-related protein Rab-4A, Ras-related protein Rab-6A, Proteasome subunit beta type-8, Ras-related protein Rab-3C, Ras-related protein Rab-4A and Ras-related protein Rab-3B are involved in antigen processing and presentation and are cytosol a cell component of
Proteasome subunit beta type-9 Ig gamma-2A chain C region, membrane-bound form Ras-related protein Rab-3C Ig mu chain C region Ras-related protein Rab-4A Ras-related protein Rab-6A Proteasome subunit beta type-8 Ras-related protein Rab-3C Ras-related protein Rab-4A Ras-related protein Rab-3B
action filter_type
action intersection
action find_reverse
entity antigen processing and presentation
relation biological process
action find_reverse
entity cytosol
relation cell component
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'biological process', 'antigen processing and presentation'], [{'concept': 'nutrient'}, 'cell component', 'cytosol']]}
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:nutrient . ?s property:biological_process resource:antigen_processing_and_presentation . ?s property:cell_component resource:cytosol }
[]