Simple Question (Direct)
Simple Question
Q23447382
P680
Q2996394
USER
Which the biological process that represents the molecular function of hypothetical protein    CBU_0748 ?
(Q23447382,P680,c(Q2996394))
action filter_type
action find
entity Q23447382
relation P680
type Q2996394
['Q23447382', 'P680', {'concept': 'Q2996394'}]
SELECT DISTINCT ?u WHERE { resource:Q23447382 property:P680 ?u . ?u rdf:type ontology:Q2996394 }
hypothetical protein    CBU_0748
action filter_type
action find
entity hypothetical protein    CBU_0748
relation molecular function
type biological process
['hypothetical protein    CBU_0748', 'molecular function', {'concept': 'biological process'}]
SELECT DISTINCT ?u WHERE { resource:hypothetical_protein____CBU_0748 property:molecular_function ?u . ?u rdf:type ontology:biological_process }
[]
biological process
Q14860489
SYSTEM
molecular function
Q14860489
(Q23447382,P680,c(Q2996394))
action filter_type
action find
entity Q23447382
relation P680
type Q2996394
Represents the [ANSWER]
['Q23447382', 'P680', {'concept': 'Q2996394'}]
SELECT DISTINCT ?u WHERE { resource:Q23447382 property:P680 ?u . ?u rdf:type ontology:Q2996394 }
molecular function
Represents the molecular function
molecular function
action filter_type
action find
entity hypothetical protein    CBU_0748
relation molecular function
type biological process
['hypothetical protein    CBU_0748', 'molecular function', {'concept': 'biological process'}]
SELECT DISTINCT ?u WHERE { resource:hypothetical_protein____CBU_0748 property:molecular_function ?u . ?u rdf:type ontology:biological_process }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23447382
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(c(Q863908),P688,Q14860489)
action filter_type
action find_reverse
entity Q23447382
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q14860489']
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:Q863908 . ?x property:P688 resource:Q23447382 }
hypothetical protein    CBU_0748
action filter_type
action find_reverse
entity hypothetical protein    CBU_0748
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'molecular function']
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:nucleic_acid_sequence . ?x property:encodes resource:hypothetical_protein____CBU_0748 }
[]
nucleic acid sequence
Q23360339
SYSTEM
hypothetical protein    CBU_0748
Q23360339
(c(Q863908),P688,Q14860489)
action filter_type
action find_reverse
entity Q23447382
relation P688
type Q863908
Hypothetical protein CBU 0748 encodes that nutrient
[{'concept': 'Q863908'}, 'P688', 'Q14860489']
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:Q863908 . ?x property:P688 resource:Q23447382 }
hypothetical protein    CBU_0748
Hypothetical protein CBU 0748 encodes that nutrient
hypothetical protein    CBU_0748
action filter_type
action find_reverse
entity hypothetical protein    CBU_0748
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'molecular function']
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:nucleic_acid_sequence . ?x property:encodes resource:hypothetical_protein____CBU_0748 }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23360339
P703
Q631147
USER
Which taxon is that nucleic acid sequence a part of ?
(Q23360339,P703,c(Q631147))
action filter_type
action find
entity Q23360339
relation P703
type Q631147
['Q23360339', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?i WHERE { ?i rdf:type ontology:Q631147 . resource:Q23360339 property:P703 ?i }
hypothetical protein    CBU_0748
action filter_type
action find
entity hypothetical protein    CBU_0748
relation found in taxon
type infraspecific name
['hypothetical protein    CBU_0748', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?i WHERE { ?i rdf:type ontology:infraspecific_name . resource:hypothetical_protein____CBU_0748 property:found_in_taxon ?i }
[]
infraspecific name
Q21064832
SYSTEM
Coxiella burnetii RSA 493
Q21064832
(Q23360339,P703,c(Q631147))
action filter_type
action find
entity Q23360339
relation P703
type Q631147
[ANSWER] is that nucleic acid sequence a part of
['Q23360339', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?i WHERE { ?i rdf:type ontology:Q631147 . resource:Q23360339 property:P703 ?i }
Coxiella burnetii RSA 493
Coxiella burnetii RSA 493 is that nucleic acid sequence a part of
Coxiella burnetii RSA 493
action filter_type
action find
entity hypothetical protein    CBU_0748
relation found in taxon
type infraspecific name
['hypothetical protein    CBU_0748', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?i WHERE { ?i rdf:type ontology:infraspecific_name . resource:hypothetical_protein____CBU_0748 property:found_in_taxon ?i }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23360339
P702
Q181394
USER
Which nutrient does hypothetical protein    CBU_0748 encode ?
(c(Q181394),P702,Q23360339)
action filter_type
action find_reverse
entity Q23360339
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q23360339']
SELECT DISTINCT ?b WHERE { ?b property:P702 resource:Q23360339 . ?b rdf:type ontology:Q181394 }
hypothetical protein    CBU_0748
action filter_type
action find_reverse
entity hypothetical protein    CBU_0748
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'hypothetical protein    CBU_0748']
SELECT DISTINCT ?b WHERE { ?b property:encoded_by resource:hypothetical_protein____CBU_0748 . ?b rdf:type ontology:nutrient }
[]
nutrient
Q23447382
SYSTEM
hypothetical protein    CBU_0748
Q23447382
(c(Q181394),P702,Q23360339)
action filter_type
action find_reverse
entity Q23360339
relation P702
type Q181394
Hypothetical protein CBU_0748 encodes the hypothetical protein CBU 0748
[{'concept': 'Q181394'}, 'P702', 'Q23360339']
SELECT DISTINCT ?b WHERE { ?b property:P702 resource:Q23360339 . ?b rdf:type ontology:Q181394 }
hypothetical protein    CBU_0748
Hypothetical protein CBU_0748 encodes the hypothetical protein CBU 0748
hypothetical protein    CBU_0748
action filter_type
action find_reverse
entity hypothetical protein    CBU_0748
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'hypothetical protein    CBU_0748']
SELECT DISTINCT ?b WHERE { ?b property:encoded_by resource:hypothetical_protein____CBU_0748 . ?b rdf:type ontology:nutrient }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q23447382 Q22327108
P681
Q5058355
USER
Is mitochondrial membrane part a component of hypothetical protein    CBU_0748 ?
(Q23447382,P681,Q22327108)
action is_in
entity Q22327108
action find
entity Q23447382
relation P681
['Q23447382', 'P681', 'Q22327108']
ASK WHERE { resource:Q23447382 property:P681 resource:Q22327108 }
hypothetical protein    CBU_0748 mitochondrial membrane part
action is_in
entity mitochondrial membrane part
action find
entity hypothetical protein    CBU_0748
relation cell component
['hypothetical protein    CBU_0748', 'cell component', 'mitochondrial membrane part']
ASK WHERE { resource:hypothetical_protein____CBU_0748 property:cell_component resource:mitochondrial_membrane_part }
[]
cellular component
SYSTEM
NO
(Q23447382,P681,Q22327108)
action is_in
entity Q22327108
action find
entity Q23447382
relation P681
[ANSWER]
['Q23447382', 'P681', 'Q22327108']
ASK WHERE { resource:Q23447382 property:P681 resource:Q22327108 }
No
action is_in
entity mitochondrial membrane part
action find
entity hypothetical protein    CBU_0748
relation cell component
['hypothetical protein    CBU_0748', 'cell component', 'mitochondrial membrane part']
ASK WHERE { resource:hypothetical_protein____CBU_0748 property:cell_component resource:mitochondrial_membrane_part }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Mult. entity type
Q23447382 Q414050
P681
Q5058355
USER
How many cellular components are the cell components of hypothetical protein    CBU_0748 or Klotho ?
(Q23447382,P681,c(Q5058355)) (Q414050,P681,c(Q5058355))
action count
action union
action filter_type
action find
entity Q23447382
relation P681
type Q5058355
action filter_type
action find
entity Q414050
relation P681
type Q5058355
['Q23447382', 'P681', {'concept': 'Q5058355'}] ['Q414050', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ( COUNT ( ?i ) AS ?n ) WHERE { { resource:Q23447382 property:P681 ?i . ?i rdf:type ontology:Q5058355 } UNION { ?i rdf:type ontology:Q5058355 . resource:Q414050 property:P681 ?i } }
hypothetical protein    CBU_0748 Klotho
action count
action union
action filter_type
action find
entity hypothetical protein    CBU_0748
relation cell component
type cellular component
action filter_type
action find
entity Klotho
relation cell component
type cellular component
['hypothetical protein    CBU_0748', 'cell component', {'concept': 'cellular component'}] ['Klotho', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ( COUNT ( ?i ) AS ?n ) WHERE { { resource:hypothetical_protein____CBU_0748 property:cell_component ?i . ?i rdf:type ontology:cellular_component } UNION { ?i rdf:type ontology:cellular_component . resource:Klotho property:cell_component ?i } }
[]
cellular component
SYSTEM
3
Q2914458 Q29548 Q3824358
(Q23447382,P681,c(Q5058355)) (Q414050,P681,c(Q5058355))
action count
action union
action filter_type
action find
entity Q23447382
relation P681
type Q5058355
action filter_type
action find
entity Q414050
relation P681
type Q5058355
[ANSWER]
['Q23447382', 'P681', {'concept': 'Q5058355'}] ['Q414050', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ( COUNT ( ?i ) AS ?n ) WHERE { { resource:Q23447382 property:P681 ?i . ?i rdf:type ontology:Q5058355 } UNION { ?i rdf:type ontology:Q5058355 . resource:Q414050 property:P681 ?i } }
extracellular space plasma membrane intracellular
3
action count
action union
action filter_type
action find
entity hypothetical protein    CBU_0748
relation cell component
type cellular component
action filter_type
action find
entity Klotho
relation cell component
type cellular component
['hypothetical protein    CBU_0748', 'cell component', {'concept': 'cellular component'}] ['Klotho', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ( COUNT ( ?i ) AS ?n ) WHERE { { resource:hypothetical_protein____CBU_0748 property:cell_component ?i . ?i rdf:type ontology:cellular_component } UNION { ?i rdf:type ontology:cellular_component . resource:Klotho property:cell_component ?i } }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q22272618 Q23447382
P702
Q863908
USER
Which nucleic acid sequences genes encode hypothetical protein    CBU_0748 or thioredoxin    NMB1845 ?
OR((Q23447382,P702,c(Q863908)), (Q22272618,P702,c(Q863908)))
action filter_type
action union
action find
entity Q23447382
relation P702
action find
entity Q22272618
relation P702
type Q863908
{'OR': [['Q23447382', 'P702', {'concept': 'Q863908'}], ['Q22272618', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?a WHERE { { { resource:Q23447382 property:P702 ?a } UNION { resource:Q22272618 property:P702 ?a } } . ?a rdf:type ontology:Q863908 }
thioredoxin    NMB1845 hypothetical protein    CBU_0748
action filter_type
action union
action find
entity hypothetical protein    CBU_0748
relation encoded by
action find
entity thioredoxin    NMB1845
relation encoded by
type nucleic acid sequence
{'OR': [['hypothetical protein    CBU_0748', 'encoded by', {'concept': 'nucleic acid sequence'}], ['thioredoxin    NMB1845', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?a WHERE { { { resource:hypothetical_protein____CBU_0748 property:encoded_by ?a } UNION { resource:thioredoxin____NMB1845 property:encoded_by ?a } } . ?a rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q22268842 Q23360339
SYSTEM
thioredoxin    NMB1845, hypothetical protein    CBU_0748
Q22268842 Q23360339
OR((Q23447382,P702,c(Q863908)), (Q22272618,P702,c(Q863908)))
action filter_type
action union
action find
entity Q23447382
relation P702
action find
entity Q22272618
relation P702
type Q863908
[ANSWERS]
{'OR': [['Q23447382', 'P702', {'concept': 'Q863908'}], ['Q22272618', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?a WHERE { { { resource:Q23447382 property:P702 ?a } UNION { resource:Q22272618 property:P702 ?a } } . ?a rdf:type ontology:Q863908 }
thioredoxin    NMB1845 hypothetical protein    CBU_0748
Thioredoxin NMB1845 and hypothetical protein CBU 0748 encode hypothetical protein CBU_0748 or thioredoxin NMB1845
thioredoxin    NMB1845 hypothetical protein    CBU_0748
action filter_type
action union
action find
entity hypothetical protein    CBU_0748
relation encoded by
action find
entity thioredoxin    NMB1845
relation encoded by
type nucleic acid sequence
{'OR': [['hypothetical protein    CBU_0748', 'encoded by', {'concept': 'nucleic acid sequence'}], ['thioredoxin    NMB1845', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?a WHERE { { { resource:hypothetical_protein____CBU_0748 property:encoded_by ?a } UNION { resource:thioredoxin____NMB1845 property:encoded_by ?a } } . ?a rdf:type ontology:nucleic_acid_sequence }
[]