Simple Question (Direct)
Simple Question
Q27550123
P681
Q15989253
USER
Which part is a component of protein kinase FMP48 YGR052W ?
(Q27550123,P681,c(Q15989253))
action filter_type
action find
entity Q27550123
relation P681
type Q15989253
['Q27550123', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?e WHERE { resource:Q27550123 property:P681 ?e . ?e rdf:type ontology:Q15989253 }
protein kinase FMP48 YGR052W
action filter_type
action find
entity protein kinase FMP48 YGR052W
relation cell component
type part
['protein kinase FMP48 YGR052W', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?e WHERE { resource:protein_kinase_FMP48_YGR052W property:cell_component ?e . ?e rdf:type ontology:part }
[]
part
Q39572
SYSTEM
mitochondrion
Q39572
(Q27550123,P681,c(Q15989253))
action filter_type
action find
entity Q27550123
relation P681
type Q15989253
The [ANSWER] is a component of protein kinase FMP48 YGR052W
['Q27550123', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?e WHERE { resource:Q27550123 property:P681 ?e . ?e rdf:type ontology:Q15989253 }
mitochondrion
The mitochondrion is a component of protein kinase FMP48 YGR052W
mitochondrion
action filter_type
action find
entity protein kinase FMP48 YGR052W
relation cell component
type part
['protein kinase FMP48 YGR052W', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?e WHERE { resource:protein_kinase_FMP48_YGR052W property:cell_component ?e . ?e rdf:type ontology:part }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q39572
P361
Q5058355
USER
Which cellular component is a portion of that part ?
(c(Q5058355),P361,Q39572)
action filter_type
action find_reverse
entity Q39572
relation P361
type Q5058355
[{'concept': 'Q5058355'}, 'P361', 'Q39572']
SELECT DISTINCT ?r WHERE { ?r property:P361 resource:Q39572 . ?r rdf:type ontology:Q5058355 }
mitochondrion
action filter_type
action find_reverse
entity mitochondrion
relation part of
type cellular component
[{'concept': 'cellular component'}, 'part of', 'mitochondrion']
SELECT DISTINCT ?r WHERE { ?r property:part_of resource:mitochondrion . ?r rdf:type ontology:cellular_component }
[]
cellular component
Q14912978
SYSTEM
mitochondrial nucleoid
Q14912978
(c(Q5058355),P361,Q39572)
action filter_type
action find_reverse
entity Q39572
relation P361
type Q5058355
DNA [ANSWER] is a portion of that part
[{'concept': 'Q5058355'}, 'P361', 'Q39572']
SELECT DISTINCT ?r WHERE { ?r property:P361 resource:Q39572 . ?r rdf:type ontology:Q5058355 }
mitochondrial nucleoid
DNA mitochondrial nucleoid is a portion of that part
mitochondrial nucleoid
action filter_type
action find_reverse
entity mitochondrion
relation part of
type cellular component
[{'concept': 'cellular component'}, 'part of', 'mitochondrion']
SELECT DISTINCT ?r WHERE { ?r property:part_of resource:mitochondrion . ?r rdf:type ontology:cellular_component }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q39572
P138
Q1348351
USER
Which mode of inheritance is the eponym of that part ?
(c(Q1348351),P138,Q14912978)
action filter_type
action find_reverse
entity Q39572
relation P138
type Q1348351
[{'concept': 'Q1348351'}, 'P138', 'Q14912978']
SELECT DISTINCT ?h WHERE { ?h property:P138 resource:Q39572 . ?h rdf:type ontology:Q1348351 }
mitochondrion
action filter_type
action find_reverse
entity mitochondrion
relation named after
type mode of inheritance
[{'concept': 'mode of inheritance'}, 'named after', 'mitochondrial nucleoid']
SELECT DISTINCT ?h WHERE { ?h property:named_after resource:mitochondrion . ?h rdf:type ontology:mode_of_inheritance }
[]
mode of inheritance
Q15729075
SYSTEM
mitochondrial
Q15729075
(c(Q1348351),P138,Q14912978)
action filter_type
action find_reverse
entity Q39572
relation P138
type Q1348351
DNA [ANSWER] is the eponym of that part
[{'concept': 'Q1348351'}, 'P138', 'Q14912978']
SELECT DISTINCT ?h WHERE { ?h property:P138 resource:Q39572 . ?h rdf:type ontology:Q1348351 }
mitochondrial
DNA mitochondrial is the eponym of that part
mitochondrial
action filter_type
action find_reverse
entity mitochondrion
relation named after
type mode of inheritance
[{'concept': 'mode of inheritance'}, 'named after', 'mitochondrial nucleoid']
SELECT DISTINCT ?h WHERE { ?h property:named_after resource:mitochondrion . ?h rdf:type ontology:mode_of_inheritance }
[]
Quantitative Reasoning (All)
Quantitative|Min/Max|Single entity type
P361
Q15989253 Q5058355
USER
Which parts are max number of cellular components a component of ?
(c(Q5058355),P361,Q24777202)
action argmax
action find_reverse_tuple_counts
relation P361
type Q15989253
type Q5058355
[{'concept': 'Q5058355'}, 'P361', 'Q24777202']
SELECT DISTINCT ?p WHERE { { SELECT DISTINCT ( MAX ( ?t ) AS ?a ) { SELECT DISTINCT ?u ( COUNT ( ?x ) AS ?t ) WHERE { ?u rdf:type ontology:Q15989253 . ?x rdf:type ontology:Q5058355 . ?x property:P361 ?u } GROUP BY ?u } } . { SELECT DISTINCT ?p ( COUNT ( ?j ) AS ?o ) WHERE { ?j property:P361 ?p . ?p rdf:type ontology:Q15989253 . ?j rdf:type ontology:Q5058355 } GROUP BY ?p } . FILTER ( ?o = ?a ) }
action argmax
action find_reverse_tuple_counts
relation part of
type part
type cellular component
[{'concept': 'cellular component'}, 'part of', 'Ribosomal protein L30, ferredoxin-like fold domain']
SELECT DISTINCT ?p WHERE { { SELECT DISTINCT ( MAX ( ?t ) AS ?a ) { SELECT DISTINCT ?u ( COUNT ( ?x ) AS ?t ) WHERE { ?u rdf:type ontology:part . ?x rdf:type ontology:cellular_component . ?x property:part_of ?u } GROUP BY ?u } } . { SELECT DISTINCT ?p ( COUNT ( ?j ) AS ?o ) WHERE { ?j property:part_of ?p . ?p rdf:type ontology:part . ?j rdf:type ontology:cellular_component } GROUP BY ?p } . FILTER ( ?o = ?a ) }
[]
part cellular component
Q187181 Q14645596
SYSTEM
synapse, extracellular region
Q187181 Q14645596
(c(Q5058355),P361,Q24777202)
action argmax
action find_reverse_tuple_counts
relation P361
type Q15989253
type Q5058355
The [ANSWERS] are max number of cellular components a component of
[{'concept': 'Q5058355'}, 'P361', 'Q24777202']
SELECT DISTINCT ?p WHERE { { SELECT DISTINCT ( MAX ( ?t ) AS ?a ) { SELECT DISTINCT ?u ( COUNT ( ?x ) AS ?t ) WHERE { ?u rdf:type ontology:Q15989253 . ?x rdf:type ontology:Q5058355 . ?x property:P361 ?u } GROUP BY ?u } } . { SELECT DISTINCT ?p ( COUNT ( ?j ) AS ?o ) WHERE { ?j property:P361 ?p . ?p rdf:type ontology:Q15989253 . ?j rdf:type ontology:Q5058355 } GROUP BY ?p } . FILTER ( ?o = ?a ) }
synapse extracellular region
The synapse and extracellular region are max number of cellular components a component of
synapse extracellular region
action argmax
action find_reverse_tuple_counts
relation part of
type part
type cellular component
[{'concept': 'cellular component'}, 'part of', 'Ribosomal protein L30, ferredoxin-like fold domain']
SELECT DISTINCT ?p WHERE { { SELECT DISTINCT ( MAX ( ?t ) AS ?a ) { SELECT DISTINCT ?u ( COUNT ( ?x ) AS ?t ) WHERE { ?u rdf:type ontology:part . ?x rdf:type ontology:cellular_component . ?x property:part_of ?u } GROUP BY ?u } } . { SELECT DISTINCT ?p ( COUNT ( ?j ) AS ?o ) WHERE { ?j property:part_of ?p . ?p rdf:type ontology:part . ?j rdf:type ontology:cellular_component } GROUP BY ?p } . FILTER ( ?o = ?a ) }
[]
Verification (Boolean) (All)
Verification|one entity, multiple entities (as object) referred indirectly
Q21158318
P681
Q181394
USER
Are those parts a cell component of Nectin-1 ?
(Q21158318,P681,Q187181) (Q21158318,P681,Q14645596)
action is_in
entity prev_answer
action find
entity Q21158318
relation P681
['Q21158318', 'P681', 'Q187181'] ['Q21158318', 'P681', 'Q14645596']
ASK WHERE { VALUES ( ?c ) { ( resource:Q187181 ) ( resource:Q14645596 ) } . resource:Q21158318 property:P681 ?c }
Nectin-1
action is_in
entity prev_answer
action find
entity Nectin-1
relation cell component
['Nectin-1', 'cell component', 'synapse'] ['Nectin-1', 'cell component', 'extracellular region']
ASK WHERE { VALUES ( ?c ) { ( resource:synapse ) ( resource:extracellular_region ) } . resource:Nectin-1 property:cell_component ?c }
[]
nutrient
SYSTEM
YES
(Q21158318,P681,Q187181) (Q21158318,P681,Q14645596)
action is_in
entity prev_answer
action find
entity Q21158318
relation P681
[ANSWER]
['Q21158318', 'P681', 'Q187181'] ['Q21158318', 'P681', 'Q14645596']
ASK WHERE { VALUES ( ?c ) { ( resource:Q187181 ) ( resource:Q14645596 ) } . resource:Q21158318 property:P681 ?c }
Yes
action is_in
entity prev_answer
action find
entity Nectin-1
relation cell component
['Nectin-1', 'cell component', 'synapse'] ['Nectin-1', 'cell component', 'extracellular region']
ASK WHERE { VALUES ( ?c ) { ( resource:synapse ) ( resource:extracellular_region ) } . resource:Nectin-1 property:cell_component ?c }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21158318
P703
Q16521
USER
Which taxon is that nutrient found in ?
action filter_type
action find
entity Q21158318
relation P703
type Q16521
SELECT DISTINCT ?a WHERE { resource:Q21158318 property:P703 ?a . ?a rdf:type ontology:Q16521 }
Nectin-1
action filter_type
action find
entity Nectin-1
relation found in taxon
type taxon
SELECT DISTINCT ?a WHERE { resource:Nectin-1 property:found_in_taxon ?a . ?a rdf:type ontology:taxon }
[]
taxon
Q15978631
SYSTEM
Homo sapiens
Q15978631
action filter_type
action find
entity Q21158318
relation P703
type Q16521
That nutrient is found in [ANSWER]
SELECT DISTINCT ?a WHERE { resource:Q21158318 property:P703 ?a . ?a rdf:type ontology:Q16521 }
Homo sapiens
That nutrient is found in Homo sapiens
Homo sapiens
action filter_type
action find
entity Nectin-1
relation found in taxon
type taxon
SELECT DISTINCT ?a WHERE { resource:Nectin-1 property:found_in_taxon ?a . ?a rdf:type ontology:taxon }
[]
Logical Reasoning (All)
Logical|Intersection|Multiple_Relation
Q21433642 Q14912978
P361 P681
Q15989253
USER
Which parts are mitochondrial nucleoid a component of and are the components of Glutathione S-transferase P 1 ?
AND((Q14912978,P361,c(Q15989253)), (Q21433642,P681,c(Q15989253)))
action filter_type
action intersection
action find
entity Q14912978
relation P361
action find
entity Q21433642
relation P681
type Q15989253
{'AND': [['Q14912978', 'P361', {'concept': 'Q15989253'}], ['Q21433642', 'P681', {'concept': 'Q15989253'}]]}
SELECT DISTINCT ?p WHERE { ?p rdf:type ontology:Q15989253 . resource:Q14912978 property:P361 ?p . resource:Q21433642 property:P681 ?p }
Glutathione S-transferase P 1 mitochondrial nucleoid
action filter_type
action intersection
action find
entity mitochondrial nucleoid
relation part of
action find
entity Glutathione S-transferase P 1
relation cell component
type part
{'AND': [['mitochondrial nucleoid', 'part of', {'concept': 'part'}], ['Glutathione S-transferase P 1', 'cell component', {'concept': 'part'}]]}
SELECT DISTINCT ?p WHERE { ?p rdf:type ontology:part . resource:mitochondrial_nucleoid property:part_of ?p . resource:Glutathione_S-transferase_P_1 property:cell_component ?p }
[]
part
Q39572
SYSTEM
mitochondrion
Q39572
AND((Q14912978,P361,c(Q15989253)), (Q21433642,P681,c(Q15989253)))
action filter_type
action intersection
action find
entity Q14912978
relation P361
action find
entity Q21433642
relation P681
type Q15989253
[ANSWER] is mitochondrial nucleoid a component of and is the components of Glutathione S-transferase P 1
{'AND': [['Q14912978', 'P361', {'concept': 'Q15989253'}], ['Q21433642', 'P681', {'concept': 'Q15989253'}]]}
SELECT DISTINCT ?p WHERE { ?p rdf:type ontology:Q15989253 . resource:Q14912978 property:P361 ?p . resource:Q21433642 property:P681 ?p }
mitochondrion
Mitochondrion is mitochondrial nucleoid a component of and is the components of Glutathione S-transferase P 1
mitochondrion
action filter_type
action intersection
action find
entity mitochondrial nucleoid
relation part of
action find
entity Glutathione S-transferase P 1
relation cell component
type part
{'AND': [['mitochondrial nucleoid', 'part of', {'concept': 'part'}], ['Glutathione S-transferase P 1', 'cell component', {'concept': 'part'}]]}
SELECT DISTINCT ?p WHERE { ?p rdf:type ontology:part . resource:mitochondrial_nucleoid property:part_of ?p . resource:Glutathione_S-transferase_P_1 property:cell_component ?p }
[]