Simple Question (Direct)
Simple Question
Q23486827
P702
Q863908
USER
What encodes SpoU rRNA methylase family protein    SSA_1790 ?
(Q23486827,P702,c(Q863908))
action filter_type
action find
entity Q23486827
relation P702
type Q863908
['Q23486827', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?f WHERE { resource:Q23486827 property:P702 ?f . ?f rdf:type ontology:Q863908 }
SpoU rRNA methylase family protein    SSA_1790
action filter_type
action find
entity SpoU rRNA methylase family protein    SSA_1790
relation encoded by
type nucleic acid sequence
['SpoU rRNA methylase family protein    SSA_1790', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?f WHERE { resource:SpoU_rRNA_methylase_family_protein____SSA_1790 property:encoded_by ?f . ?f rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23402685
SYSTEM
SpoU rRNA methylase family protein    SSA_1790
Q23402685
(Q23486827,P702,c(Q863908))
action filter_type
action find
entity Q23486827
relation P702
type Q863908
SpoU rRNA methylase family protein SSA 1790 encodes SpoU rRNA methylase family protein SSA_1790
['Q23486827', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?f WHERE { resource:Q23486827 property:P702 ?f . ?f rdf:type ontology:Q863908 }
SpoU rRNA methylase family protein    SSA_1790
SpoU rRNA methylase family protein SSA 1790 encodes SpoU rRNA methylase family protein SSA_1790
SpoU rRNA methylase family protein    SSA_1790
action filter_type
action find
entity SpoU rRNA methylase family protein    SSA_1790
relation encoded by
type nucleic acid sequence
['SpoU rRNA methylase family protein    SSA_1790', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?f WHERE { resource:SpoU_rRNA_methylase_family_protein____SSA_1790 property:encoded_by ?f . ?f rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23486827
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(c(Q863908),P688,Q23402685)
action filter_type
action find_reverse
entity Q23486827
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q23402685']
SELECT DISTINCT ?f WHERE { ?f property:P688 resource:Q23486827 . ?f rdf:type ontology:Q863908 }
SpoU rRNA methylase family protein    SSA_1790
action filter_type
action find_reverse
entity SpoU rRNA methylase family protein    SSA_1790
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'SpoU rRNA methylase family protein    SSA_1790']
SELECT DISTINCT ?f WHERE { ?f property:encodes resource:SpoU_rRNA_methylase_family_protein____SSA_1790 . ?f rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23402685
SYSTEM
SpoU rRNA methylase family protein    SSA_1790
Q23402685
(c(Q863908),P688,Q23402685)
action filter_type
action find_reverse
entity Q23486827
relation P688
type Q863908
SpoU rRNA methylase family protein SSA 1790 encodes that nutrient
[{'concept': 'Q863908'}, 'P688', 'Q23402685']
SELECT DISTINCT ?f WHERE { ?f property:P688 resource:Q23486827 . ?f rdf:type ontology:Q863908 }
SpoU rRNA methylase family protein    SSA_1790
SpoU rRNA methylase family protein SSA 1790 encodes that nutrient
SpoU rRNA methylase family protein    SSA_1790
action filter_type
action find_reverse
entity SpoU rRNA methylase family protein    SSA_1790
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'SpoU rRNA methylase family protein    SSA_1790']
SELECT DISTINCT ?f WHERE { ?f property:encodes resource:SpoU_rRNA_methylase_family_protein____SSA_1790 . ?f rdf:type ontology:nucleic_acid_sequence }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q8386 Q79529 Q181394
USER
How many nutrients contact around 67 drugs or chemical substances ?
(c(Q181394),P129,c(Q8386)|c(Q79529))
action count
action approx
action union
action find_tuple_counts
relation P129
type Q181394
type Q8386
action find_tuple_counts
relation P129
type Q181394
type Q79529
value 67
[{'concept': 'Q181394'}, 'P129', [{'concept': 'Q8386'}, {'concept': 'Q79529'}]]
SELECT DISTINCT ( COUNT ( ?t ) AS ?w ) WHERE { { SELECT DISTINCT ( COUNT ( ?i ) AS ?b ) ?t WHERE { { ?t property:P129 ?i . ?t rdf:type ontology:Q181394 . ?i rdf:type ontology:Q8386 } UNION { ?t property:P129 ?i . ?t rdf:type ontology:Q181394 . ?i rdf:type ontology:Q79529 } } GROUP BY ?t } . FILTER ( ?b = 67 ) }
action count
action approx
action union
action find_tuple_counts
relation physically interacts with
type nutrient
type drug
action find_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
value 67
[{'concept': 'nutrient'}, 'physically interacts with', [{'concept': 'drug'}, {'concept': 'chemical substance'}]]
SELECT DISTINCT ( COUNT ( ?t ) AS ?w ) WHERE { { SELECT DISTINCT ( COUNT ( ?i ) AS ?b ) ?t WHERE { { ?t property:physically_interacts_with ?i . ?t rdf:type ontology:nutrient . ?i rdf:type ontology:drug } UNION { ?t property:physically_interacts_with ?i . ?t rdf:type ontology:nutrient . ?i rdf:type ontology:chemical_substance } } GROUP BY ?t } . FILTER ( ?b = 67 ) }
[]
drug chemical substance nutrient
SYSTEM
2
Q4639596 Q21115046
(c(Q181394),P129,c(Q8386)|c(Q79529))
action count
action approx
action union
action find_tuple_counts
relation P129
type Q181394
type Q8386
action find_tuple_counts
relation P129
type Q181394
type Q79529
value 67
[ANSWER]
[{'concept': 'Q181394'}, 'P129', [{'concept': 'Q8386'}, {'concept': 'Q79529'}]]
SELECT DISTINCT ( COUNT ( ?t ) AS ?w ) WHERE { { SELECT DISTINCT ( COUNT ( ?i ) AS ?b ) ?t WHERE { { ?t property:P129 ?i . ?t rdf:type ontology:Q181394 . ?i rdf:type ontology:Q8386 } UNION { ?t property:P129 ?i . ?t rdf:type ontology:Q181394 . ?i rdf:type ontology:Q79529 } } GROUP BY ?t } . FILTER ( ?b = 67 ) }
5-hydroxytryptamine receptor 2B 5-hydroxytryptamine receptor 1D
2
action count
action approx
action union
action find_tuple_counts
relation physically interacts with
type nutrient
type drug
action find_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
value 67
[{'concept': 'nutrient'}, 'physically interacts with', [{'concept': 'drug'}, {'concept': 'chemical substance'}]]
SELECT DISTINCT ( COUNT ( ?t ) AS ?w ) WHERE { { SELECT DISTINCT ( COUNT ( ?i ) AS ?b ) ?t WHERE { { ?t property:physically_interacts_with ?i . ?t rdf:type ontology:nutrient . ?i rdf:type ontology:drug } UNION { ?t property:physically_interacts_with ?i . ?t rdf:type ontology:nutrient . ?i rdf:type ontology:chemical_substance } } GROUP BY ?t } . FILTER ( ?b = 67 ) }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23402685
P703
Q16521
USER
Which taxon is SpoU rRNA methylase family protein    SSA_1790 found in ?
(Q23402685,P703,c(Q16521))
action filter_type
action find
entity Q23402685
relation P703
type Q16521
['Q23402685', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:Q16521 . resource:Q23402685 property:P703 ?s }
SpoU rRNA methylase family protein    SSA_1790
action filter_type
action find
entity SpoU rRNA methylase family protein    SSA_1790
relation found in taxon
type taxon
['SpoU rRNA methylase family protein    SSA_1790', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:taxon . resource:SpoU_rRNA_methylase_family_protein____SSA_1790 property:found_in_taxon ?s }
[]
taxon
Q21399278
SYSTEM
Streptococcus sanguinis SK36
Q21399278
(Q23402685,P703,c(Q16521))
action filter_type
action find
entity Q23402685
relation P703
type Q16521
Protein family SSA_1790 is found in [ANSWER] rRNA SpoU methylase
['Q23402685', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:Q16521 . resource:Q23402685 property:P703 ?s }
Streptococcus sanguinis SK36
Protein family SSA_1790 is found in Streptococcus sanguinis SK36 rRNA SpoU methylase
Streptococcus sanguinis SK36
action filter_type
action find
entity SpoU rRNA methylase family protein    SSA_1790
relation found in taxon
type taxon
['SpoU rRNA methylase family protein    SSA_1790', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:taxon . resource:SpoU_rRNA_methylase_family_protein____SSA_1790 property:found_in_taxon ?s }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23486827
P682
Q2996394
USER
What is the biological process that SpoU rRNA methylase family protein    SSA_1790 is involved in ?
(Q23486827,P682,c(Q2996394))
action filter_type
action find
entity Q23486827
relation P682
type Q2996394
['Q23486827', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?h WHERE { resource:Q23486827 property:P682 ?h . ?h rdf:type ontology:Q2996394 }
SpoU rRNA methylase family protein    SSA_1790
action filter_type
action find
entity SpoU rRNA methylase family protein    SSA_1790
relation biological process
type biological process
['SpoU rRNA methylase family protein    SSA_1790', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?h WHERE { resource:SpoU_rRNA_methylase_family_protein____SSA_1790 property:biological_process ?h . ?h rdf:type ontology:biological_process }
[]
biological process
Q518328
SYSTEM
methylation
Q518328
(Q23486827,P682,c(Q2996394))
action filter_type
action find
entity Q23486827
relation P682
type Q2996394
The biological process that SpoU rRNA methylase family protein SSA_1790 is involved in is RNA [ANSWER]
['Q23486827', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?h WHERE { resource:Q23486827 property:P682 ?h . ?h rdf:type ontology:Q2996394 }
methylation
The biological process that SpoU rRNA methylase family protein SSA_1790 is involved in is RNA methylation
methylation
action filter_type
action find
entity SpoU rRNA methylase family protein    SSA_1790
relation biological process
type biological process
['SpoU rRNA methylase family protein    SSA_1790', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?h WHERE { resource:SpoU_rRNA_methylase_family_protein____SSA_1790 property:biological_process ?h . ?h rdf:type ontology:biological_process }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Single entity type|Indirect
P682
Q2996394 Q181394
USER
How many biological processes are approximately the same number of nutrients involved in as that biological process ?
(c(Q181394),P682,c(Q2996394))
action count
action approx
action find_reverse_tuple_counts
relation P682
type Q2996394
type Q181394
action count
action filter_type
action find
entity Q518328
relation P682
type Q2996394
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ( COUNT ( ?f ) AS ?w ) WHERE { { SELECT DISTINCT ?f ( COUNT ( ?l ) AS ?a ) WHERE { ?l property:P682 ?f . ?f rdf:type ontology:Q2996394 . ?l rdf:type ontology:Q181394 } GROUP BY ?f } . { SELECT DISTINCT ( COUNT ( ?g ) AS ?i ) WHERE { resource:Q518328 property:P682 ?g . ?g rdf:type ontology:Q2996394 } } . FILTER ( ?a = ?i ) }
action count
action approx
action find_reverse_tuple_counts
relation biological process
type biological process
type nutrient
action count
action filter_type
action find
entity methylation
relation biological process
type biological process
[{'concept': 'nutrient'}, 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ( COUNT ( ?f ) AS ?w ) WHERE { { SELECT DISTINCT ?f ( COUNT ( ?l ) AS ?a ) WHERE { ?l property:biological_process ?f . ?f rdf:type ontology:biological_process . ?l rdf:type ontology:nutrient } GROUP BY ?f } . { SELECT DISTINCT ( COUNT ( ?g ) AS ?i ) WHERE { resource:methylation property:biological_process ?g . ?g rdf:type ontology:biological_process } } . FILTER ( ?a = ?i ) }
[]
biological process nutrient
SYSTEM
1
Q518328
(c(Q181394),P682,c(Q2996394))
action count
action approx
action find_reverse_tuple_counts
relation P682
type Q2996394
type Q181394
action count
action filter_type
action find
entity Q518328
relation P682
type Q2996394
[ANSWER]
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ( COUNT ( ?f ) AS ?w ) WHERE { { SELECT DISTINCT ?f ( COUNT ( ?l ) AS ?a ) WHERE { ?l property:P682 ?f . ?f rdf:type ontology:Q2996394 . ?l rdf:type ontology:Q181394 } GROUP BY ?f } . { SELECT DISTINCT ( COUNT ( ?g ) AS ?i ) WHERE { resource:Q518328 property:P682 ?g . ?g rdf:type ontology:Q2996394 } } . FILTER ( ?a = ?i ) }
methylation
1
action count
action approx
action find_reverse_tuple_counts
relation biological process
type biological process
type nutrient
action count
action filter_type
action find
entity methylation
relation biological process
type biological process
[{'concept': 'nutrient'}, 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ( COUNT ( ?f ) AS ?w ) WHERE { { SELECT DISTINCT ?f ( COUNT ( ?l ) AS ?a ) WHERE { ?l property:biological_process ?f . ?f rdf:type ontology:biological_process . ?l rdf:type ontology:nutrient } GROUP BY ?f } . { SELECT DISTINCT ( COUNT ( ?g ) AS ?i ) WHERE { resource:methylation property:biological_process ?g . ?g rdf:type ontology:biological_process } } . FILTER ( ?a = ?i ) }
[]
Quantitative Reasoning (Count) (All)
Incomplete count-based ques
Q24120948
Q2996394
USER
And also tell me about FkbP-type peptidyl-prolyl cis-trans isomerase    BN117_3010?
(Q24120948,P682,c(Q2996394))
action count
action filter_type
action find
entity Q24120948
relation P682
type Q2996394
['Q24120948', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ( COUNT ( ?r ) AS ?w ) WHERE { ?r rdf:type ontology:Q2996394 . resource:Q24120948 property:P682 ?r }
FkbP-type peptidyl-prolyl cis-trans isomerase    BN117_3010
action count
action filter_type
action find
entity FkbP-type peptidyl-prolyl cis-trans isomerase    BN117_3010
relation biological process
type biological process
['FkbP-type peptidyl-prolyl cis-trans isomerase    BN117_3010', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ( COUNT ( ?r ) AS ?w ) WHERE { ?r rdf:type ontology:biological_process . resource:FkbP-type_peptidyl-prolyl_cis-trans_isomerase____BN117_3010 property:biological_process ?r }
[]
biological process
SYSTEM
1
(Q24120948,P682,c(Q2996394))
action count
action filter_type
action find
entity Q24120948
relation P682
type Q2996394
[ANSWER]
['Q24120948', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ( COUNT ( ?r ) AS ?w ) WHERE { ?r rdf:type ontology:Q2996394 . resource:Q24120948 property:P682 ?r }
1
action count
action filter_type
action find
entity FkbP-type peptidyl-prolyl cis-trans isomerase    BN117_3010
relation biological process
type biological process
['FkbP-type peptidyl-prolyl cis-trans isomerase    BN117_3010', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ( COUNT ( ?r ) AS ?w ) WHERE { ?r rdf:type ontology:biological_process . resource:FkbP-type_peptidyl-prolyl_cis-trans_isomerase____BN117_3010 property:biological_process ?r }
[]