Simple Question (Direct)
Simple Question
Q21631947
P681
Q5058355
USER
Which is the cell component of heat shock protein HtpX    HP0927 ?
(Q21631947,P681,c(Q5058355))
action filter_type
action find
entity Q21631947
relation P681
type Q5058355
['Q21631947', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?k WHERE { resource:Q21631947 property:P681 ?k . ?k rdf:type ontology:Q5058355 }
heat shock protein HtpX    HP0927
action filter_type
action find
entity heat shock protein HtpX    HP0927
relation cell component
type cellular component
['heat shock protein HtpX    HP0927', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?k WHERE { resource:heat_shock_protein_HtpX____HP0927 property:cell_component ?k . ?k rdf:type ontology:cellular_component }
[]
cellular component
Q29548
SYSTEM
plasma membrane
Q29548
(Q21631947,P681,c(Q5058355))
action filter_type
action find
entity Q21631947
relation P681
type Q5058355
The [ANSWER] is the cell component of heat shock protein HtpX HP0927
['Q21631947', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?k WHERE { resource:Q21631947 property:P681 ?k . ?k rdf:type ontology:Q5058355 }
plasma membrane
The plasma membrane is the cell component of heat shock protein HtpX HP0927
plasma membrane
action filter_type
action find
entity heat shock protein HtpX    HP0927
relation cell component
type cellular component
['heat shock protein HtpX    HP0927', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?k WHERE { resource:heat_shock_protein_HtpX____HP0927 property:cell_component ?k . ?k rdf:type ontology:cellular_component }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q29548
P361
Q5058355
USER
Which cellular components are that one a portion of ?
(Q29548,P361,c(Q5058355))
action filter_type
action find
entity Q29548
relation P361
type Q5058355
['Q29548', 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ?o WHERE { resource:Q29548 property:P361 ?o . ?o rdf:type ontology:Q5058355 }
plasma membrane
action filter_type
action find
entity plasma membrane
relation part of
type cellular component
['plasma membrane', 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ?o WHERE { resource:plasma_membrane property:part_of ?o . ?o rdf:type ontology:cellular_component }
[]
cellular component
Q899827 Q22330431 Q14864171
SYSTEM
endomembrane system, unencapsulated part of cell, cell periphery
Q899827 Q22330431 Q14864171
(Q29548,P361,c(Q5058355))
action filter_type
action find
entity Q29548
relation P361
type Q5058355
[ANSWERS] are that one a portion of
['Q29548', 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ?o WHERE { resource:Q29548 property:P361 ?o . ?o rdf:type ontology:Q5058355 }
endomembrane system unencapsulated part of cell cell periphery
Endomembrane system, unencapsulated part of cell and cell periphery are that one a portion of
endomembrane system unencapsulated part of cell cell periphery
action filter_type
action find
entity plasma membrane
relation part of
type cellular component
['plasma membrane', 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ?o WHERE { resource:plasma_membrane property:part_of ?o . ?o rdf:type ontology:cellular_component }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q22326845
Q5058355
USER
And how about intracellular organelle part?
(Q22326845,P361,c(Q5058355))
action filter_type
action find
entity Q22326845
relation P361
type Q5058355
['Q22326845', 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ?q WHERE { ?q rdf:type ontology:Q5058355 . resource:Q22326845 property:P361 ?q }
intracellular organelle part
action filter_type
action find
entity intracellular organelle part
relation part of
type cellular component
['intracellular organelle part', 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ?q WHERE { ?q rdf:type ontology:cellular_component . resource:intracellular_organelle_part property:part_of ?q }
[]
cellular component
Q14864391
SYSTEM
intracellular organelle
Q14864391
(Q22326845,P361,c(Q5058355))
action filter_type
action find
entity Q22326845
relation P361
type Q5058355
[ANSWER]
['Q22326845', 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ?q WHERE { ?q rdf:type ontology:Q5058355 . resource:Q22326845 property:P361 ?q }
intracellular organelle
intracellular organelle
action filter_type
action find
entity intracellular organelle part
relation part of
type cellular component
['intracellular organelle part', 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ?q WHERE { ?q rdf:type ontology:cellular_component . resource:intracellular_organelle_part property:part_of ?q }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q21136536 Q21631947
P680
Q44424
USER
Which chemical bonds represent molecular function of heat shock protein HtpX    HP0927 or Zinc finger and BTB domain-containing protein 12 ?
OR((Q21631947,P680,c(Q44424)), (Q21136536,P680,c(Q44424)))
action filter_type
action union
action find
entity Q21631947
relation P680
action find
entity Q21136536
relation P680
type Q44424
{'OR': [['Q21631947', 'P680', {'concept': 'Q44424'}], ['Q21136536', 'P680', {'concept': 'Q44424'}]]}
SELECT DISTINCT ?n WHERE { { { resource:Q21631947 property:P680 ?n } UNION { resource:Q21136536 property:P680 ?n } } . ?n rdf:type ontology:Q44424 }
Zinc finger and BTB domain-containing protein 12 heat shock protein HtpX    HP0927
action filter_type
action union
action find
entity heat shock protein HtpX    HP0927
relation molecular function
action find
entity Zinc finger and BTB domain-containing protein 12
relation molecular function
type chemical bond
{'OR': [['heat shock protein HtpX    HP0927', 'molecular function', {'concept': 'chemical bond'}], ['Zinc finger and BTB domain-containing protein 12', 'molecular function', {'concept': 'chemical bond'}]]}
SELECT DISTINCT ?n WHERE { { { resource:heat_shock_protein_HtpX____HP0927 property:molecular_function ?n } UNION { resource:Zinc_finger_and_BTB_domain-containing_protein_12 property:molecular_function ?n } } . ?n rdf:type ontology:chemical_bond }
[]
chemical bond
Q14633865 Q13667380
SYSTEM
zinc ion binding, metal ion binding
Q14633865 Q13667380
OR((Q21631947,P680,c(Q44424)), (Q21136536,P680,c(Q44424)))
action filter_type
action union
action find
entity Q21631947
relation P680
action find
entity Q21136536
relation P680
type Q44424
The [ANSWERS] represent molecular function of heat shock protein HtpX HP0927 or Zinc finger and BTB domain-containing protein 12
{'OR': [['Q21631947', 'P680', {'concept': 'Q44424'}], ['Q21136536', 'P680', {'concept': 'Q44424'}]]}
SELECT DISTINCT ?n WHERE { { { resource:Q21631947 property:P680 ?n } UNION { resource:Q21136536 property:P680 ?n } } . ?n rdf:type ontology:Q44424 }
zinc ion binding metal ion binding
The zinc ion binding and metal ion binding represent molecular function of heat shock protein HtpX HP0927 or Zinc finger and BTB domain-containing protein 12
zinc ion binding metal ion binding
action filter_type
action union
action find
entity heat shock protein HtpX    HP0927
relation molecular function
action find
entity Zinc finger and BTB domain-containing protein 12
relation molecular function
type chemical bond
{'OR': [['heat shock protein HtpX    HP0927', 'molecular function', {'concept': 'chemical bond'}], ['Zinc finger and BTB domain-containing protein 12', 'molecular function', {'concept': 'chemical bond'}]]}
SELECT DISTINCT ?n WHERE { { { resource:heat_shock_protein_HtpX____HP0927 property:molecular_function ?n } UNION { resource:Zinc_finger_and_BTB_domain-containing_protein_12 property:molecular_function ?n } } . ?n rdf:type ontology:chemical_bond }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21631947
P703
Q16521
USER
Where is heat shock protein HtpX    HP0927 found ?
(Q21631947,P703,c(Q16521))
action filter_type
action find
entity Q21631947
relation P703
type Q16521
['Q21631947', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?i WHERE { resource:Q21631947 property:P703 ?i . ?i rdf:type ontology:Q16521 }
heat shock protein HtpX    HP0927
action filter_type
action find
entity heat shock protein HtpX    HP0927
relation found in taxon
type taxon
['heat shock protein HtpX    HP0927', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?i WHERE { resource:heat_shock_protein_HtpX____HP0927 property:found_in_taxon ?i . ?i rdf:type ontology:taxon }
[]
taxon
Q21065231
SYSTEM
Helicobacter pylori 26695
Q21065231
(Q21631947,P703,c(Q16521))
action filter_type
action find
entity Q21631947
relation P703
type Q16521
Heat shock protein HtpX HP0927 is found in [ANSWER]
['Q21631947', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?i WHERE { resource:Q21631947 property:P703 ?i . ?i rdf:type ontology:Q16521 }
Helicobacter pylori 26695
Heat shock protein HtpX HP0927 is found in Helicobacter pylori 26695
Helicobacter pylori 26695
action filter_type
action find
entity heat shock protein HtpX    HP0927
relation found in taxon
type taxon
['heat shock protein HtpX    HP0927', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?i WHERE { resource:heat_shock_protein_HtpX____HP0927 property:found_in_taxon ?i . ?i rdf:type ontology:taxon }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21631947
P702
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(Q21065231,P702,c(Q863908))
action filter_type
action find
entity Q21631947
relation P702
type Q863908
['Q21065231', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?p WHERE { resource:Q21631947 property:P702 ?p . ?p rdf:type ontology:Q863908 }
heat shock protein HtpX    HP0927
action filter_type
action find
entity heat shock protein HtpX    HP0927
relation encoded by
type nucleic acid sequence
['Helicobacter pylori 26695', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?p WHERE { resource:heat_shock_protein_HtpX____HP0927 property:encoded_by ?p . ?p rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q21628518
SYSTEM
heat shock protein HtpX    HP0927
Q21628518
(Q21065231,P702,c(Q863908))
action filter_type
action find
entity Q21631947
relation P702
type Q863908
The heat shock protein HtpX HP0927 encodes that nutrient
['Q21065231', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?p WHERE { resource:Q21631947 property:P702 ?p . ?p rdf:type ontology:Q863908 }
heat shock protein HtpX    HP0927
The heat shock protein HtpX HP0927 encodes that nutrient
heat shock protein HtpX    HP0927
action filter_type
action find
entity heat shock protein HtpX    HP0927
relation encoded by
type nucleic acid sequence
['Helicobacter pylori 26695', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?p WHERE { resource:heat_shock_protein_HtpX____HP0927 property:encoded_by ?p . ?p rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21628518
P688
Q181394
USER
What is encoded by that nucleic acid sequence ?
(Q21628518,P688,c(Q181394))
action filter_type
action find
entity Q21628518
relation P688
type Q181394
['Q21628518', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?m WHERE { resource:Q21628518 property:P688 ?m . ?m rdf:type ontology:Q181394 }
heat shock protein HtpX    HP0927
action filter_type
action find
entity heat shock protein HtpX    HP0927
relation encodes
type nutrient
['heat shock protein HtpX    HP0927', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?m WHERE { resource:heat_shock_protein_HtpX____HP0927 property:encodes ?m . ?m rdf:type ontology:nutrient }
[]
nutrient
Q21631947
SYSTEM
heat shock protein HtpX    HP0927
Q21631947
(Q21628518,P688,c(Q181394))
action filter_type
action find
entity Q21628518
relation P688
type Q181394
The heat shock protein HtpX HP0927 is encoded by that nucleic acid sequence
['Q21628518', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?m WHERE { resource:Q21628518 property:P688 ?m . ?m rdf:type ontology:Q181394 }
heat shock protein HtpX    HP0927
The heat shock protein HtpX HP0927 is encoded by that nucleic acid sequence
heat shock protein HtpX    HP0927
action filter_type
action find
entity heat shock protein HtpX    HP0927
relation encodes
type nutrient
['heat shock protein HtpX    HP0927', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?m WHERE { resource:heat_shock_protein_HtpX____HP0927 property:encodes ?m . ?m rdf:type ontology:nutrient }
[]
Verification (Boolean) (All)
Verification|3 entities, 2 direct, 2(direct) are query entities, subject is indirect
Q21631947 Q14865842 Q423252
P680
Q44424
USER
Does that nutrient have molecular function as transition metal ion binding and disulfide bond ?
(Q21631947,P680,Q14865842) (Q21631947,P680,Q423252)
action is_in
entity Q21631947
action intersection
action find_reverse
entity Q14865842
relation P680
action find_reverse
entity Q423252
relation P680
['Q21631947', 'P680', 'Q14865842'] ['Q21631947', 'P680', 'Q423252']
ASK WHERE { resource:Q21631947 property:P680 resource:Q14865842 . resource:Q21631947 property:P680 resource:Q423252 }
heat shock protein HtpX    HP0927 transition metal ion binding disulfide bond
action is_in
entity heat shock protein HtpX    HP0927
action intersection
action find_reverse
entity transition metal ion binding
relation molecular function
action find_reverse
entity disulfide bond
relation molecular function
['heat shock protein HtpX    HP0927', 'molecular function', 'transition metal ion binding'] ['heat shock protein HtpX    HP0927', 'molecular function', 'disulfide bond']
ASK WHERE { resource:heat_shock_protein_HtpX____HP0927 property:molecular_function resource:transition_metal_ion_binding . resource:heat_shock_protein_HtpX____HP0927 property:molecular_function resource:disulfide_bond }
[]
chemical bond
SYSTEM
NO
(Q21631947,P680,Q14865842) (Q21631947,P680,Q423252)
action is_in
entity Q21631947
action intersection
action find_reverse
entity Q14865842
relation P680
action find_reverse
entity Q423252
relation P680
[ANSWER]
['Q21631947', 'P680', 'Q14865842'] ['Q21631947', 'P680', 'Q423252']
ASK WHERE { resource:Q21631947 property:P680 resource:Q14865842 . resource:Q21631947 property:P680 resource:Q423252 }
No
action is_in
entity heat shock protein HtpX    HP0927
action intersection
action find_reverse
entity transition metal ion binding
relation molecular function
action find_reverse
entity disulfide bond
relation molecular function
['heat shock protein HtpX    HP0927', 'molecular function', 'transition metal ion binding'] ['heat shock protein HtpX    HP0927', 'molecular function', 'disulfide bond']
ASK WHERE { resource:heat_shock_protein_HtpX____HP0927 property:molecular_function resource:transition_metal_ion_binding . resource:heat_shock_protein_HtpX____HP0927 property:molecular_function resource:disulfide_bond }
[]