Simple Question (Direct)
Simple Question
Q21599809
P681
Q5058355
USER
What is a component of murein transglycosylase A    BU458 ?
(Q21599809,P681,c(Q5058355))
action filter_type
action find
entity Q21599809
relation P681
type Q5058355
['Q21599809', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?n WHERE { resource:Q21599809 property:P681 ?n . ?n rdf:type ontology:Q5058355 }
murein transglycosylase A    BU458
action filter_type
action find
entity murein transglycosylase A    BU458
relation cell component
type cellular component
['murein transglycosylase A    BU458', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?n WHERE { resource:murein_transglycosylase_A____BU458 property:cell_component ?n . ?n rdf:type ontology:cellular_component }
[]
cellular component
Q21181370
SYSTEM
outer membrane
Q21181370
(Q21599809,P681,c(Q5058355))
action filter_type
action find
entity Q21599809
relation P681
type Q5058355
A component of murein transglycosylase A BU458 is the [ANSWER]
['Q21599809', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?n WHERE { resource:Q21599809 property:P681 ?n . ?n rdf:type ontology:Q5058355 }
outer membrane
A component of murein transglycosylase A BU458 is the outer membrane
outer membrane
action filter_type
action find
entity murein transglycosylase A    BU458
relation cell component
type cellular component
['murein transglycosylase A    BU458', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?n WHERE { resource:murein_transglycosylase_A____BU458 property:cell_component ?n . ?n rdf:type ontology:cellular_component }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21599809
P688
Q863908
USER
Which nucleic acid sequence encodes murein transglycosylase A    BU458 ?
(c(Q863908),P688,Q21599809)
action filter_type
action find_reverse
entity Q21599809
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q21599809']
SELECT DISTINCT ?l WHERE { ?l property:P688 resource:Q21599809 . ?l rdf:type ontology:Q863908 }
murein transglycosylase A    BU458
action filter_type
action find_reverse
entity murein transglycosylase A    BU458
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'murein transglycosylase A    BU458']
SELECT DISTINCT ?l WHERE { ?l property:encodes resource:murein_transglycosylase_A____BU458 . ?l rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q21599212
SYSTEM
murein transglycosylase A    BU458
Q21599212
(c(Q863908),P688,Q21599809)
action filter_type
action find_reverse
entity Q21599809
relation P688
type Q863908
Murein transglycosylase A BU458 encodes murein transglycosylase A BU458
[{'concept': 'Q863908'}, 'P688', 'Q21599809']
SELECT DISTINCT ?l WHERE { ?l property:P688 resource:Q21599809 . ?l rdf:type ontology:Q863908 }
murein transglycosylase A    BU458
Murein transglycosylase A BU458 encodes murein transglycosylase A BU458
murein transglycosylase A    BU458
action filter_type
action find_reverse
entity murein transglycosylase A    BU458
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'murein transglycosylase A    BU458']
SELECT DISTINCT ?l WHERE { ?l property:encodes resource:murein_transglycosylase_A____BU458 . ?l rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21599809
P702
Q863908
USER
Which gene encodes murein transglycosylase A    BU458 ?
(Q21599809,P702,c(Q863908))
action filter_type
action find
entity Q21599809
relation P702
type Q863908
['Q21599809', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?s WHERE { resource:Q21599809 property:P702 ?s . ?s rdf:type ontology:Q863908 }
murein transglycosylase A    BU458
action filter_type
action find
entity murein transglycosylase A    BU458
relation encoded by
type nucleic acid sequence
['murein transglycosylase A    BU458', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?s WHERE { resource:murein_transglycosylase_A____BU458 property:encoded_by ?s . ?s rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q21599212
SYSTEM
murein transglycosylase A    BU458
Q21599212
(Q21599809,P702,c(Q863908))
action filter_type
action find
entity Q21599809
relation P702
type Q863908
Murein transglycosylase A BU458 encodes murein transglycosylase A BU458
['Q21599809', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?s WHERE { resource:Q21599809 property:P702 ?s . ?s rdf:type ontology:Q863908 }
murein transglycosylase A    BU458
Murein transglycosylase A BU458 encodes murein transglycosylase A BU458
murein transglycosylase A    BU458
action filter_type
action find
entity murein transglycosylase A    BU458
relation encoded by
type nucleic acid sequence
['murein transglycosylase A    BU458', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?s WHERE { resource:murein_transglycosylase_A____BU458 property:encoded_by ?s . ?s rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q24111234
Q863908
USER
And how about GntR family transcriptional regulator    SMa0222?
(Q24111234,P702,c(Q863908))
action filter_type
action find
entity Q24111234
relation P702
type Q863908
['Q24111234', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?q WHERE { resource:Q24111234 property:P702 ?q . ?q rdf:type ontology:Q863908 }
GntR family transcriptional regulator    SMa0222
action filter_type
action find
entity GntR family transcriptional regulator    SMa0222
relation encoded by
type nucleic acid sequence
['GntR family transcriptional regulator    SMa0222', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?q WHERE { resource:GntR_family_transcriptional_regulator____SMa0222 property:encoded_by ?q . ?q rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23169436
SYSTEM
GntR family transcriptional regulator    SMa0222
Q23169436
(Q24111234,P702,c(Q863908))
action filter_type
action find
entity Q24111234
relation P702
type Q863908
[ANSWER]
['Q24111234', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?q WHERE { resource:Q24111234 property:P702 ?q . ?q rdf:type ontology:Q863908 }
GntR family transcriptional regulator    SMa0222
GntR family transcriptional regulator    SMa0222
action filter_type
action find
entity GntR family transcriptional regulator    SMa0222
relation encoded by
type nucleic acid sequence
['GntR family transcriptional regulator    SMa0222', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?q WHERE { resource:GntR_family_transcriptional_regulator____SMa0222 property:encoded_by ?q . ?q rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q24111234
P703
Q631147
USER
Which infraspecific name is that nutrient found in ?
(Q23169436,P703,c(Q631147))
action filter_type
action find
entity Q24111234
relation P703
type Q631147
['Q23169436', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?z WHERE { resource:Q24111234 property:P703 ?z . ?z rdf:type ontology:Q631147 }
GntR family transcriptional regulator    SMa0222
action filter_type
action find
entity GntR family transcriptional regulator    SMa0222
relation found in taxon
type infraspecific name
['GntR family transcriptional regulator    SMa0222', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?z WHERE { resource:GntR_family_transcriptional_regulator____SMa0222 property:found_in_taxon ?z . ?z rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102918
SYSTEM
Sinorhizobium meliloti 1021
Q21102918
(Q23169436,P703,c(Q631147))
action filter_type
action find
entity Q24111234
relation P703
type Q631147
And [ANSWER] is that nutrient found in
['Q23169436', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?z WHERE { resource:Q24111234 property:P703 ?z . ?z rdf:type ontology:Q631147 }
Sinorhizobium meliloti 1021
And Sinorhizobium meliloti 1021 is that nutrient found in
Sinorhizobium meliloti 1021
action filter_type
action find
entity GntR family transcriptional regulator    SMa0222
relation found in taxon
type infraspecific name
['GntR family transcriptional regulator    SMa0222', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?z WHERE { resource:GntR_family_transcriptional_regulator____SMa0222 property:found_in_taxon ?z . ?z rdf:type ontology:infraspecific_name }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q21102918 Q24109996
P703
Q181394
USER
Is alternative cytochrome C oxidase polypeptide II transmembrane protein    SMc01982 found in the taxon that infraspecific name ?
(Q24109996,P703,Q21102918)
action is_in
entity Q21102918
action find
entity Q24109996
relation P703
['Q24109996', 'P703', 'Q21102918']
ASK WHERE { resource:Q24109996 property:P703 resource:Q21102918 }
Sinorhizobium meliloti 1021 alternative cytochrome C oxidase polypeptide II transmembrane protein    SMc01982
action is_in
entity Sinorhizobium meliloti 1021
action find
entity alternative cytochrome C oxidase polypeptide II transmembrane protein    SMc01982
relation found in taxon
['alternative cytochrome C oxidase polypeptide II transmembrane protein    SMc01982', 'found in taxon', 'Sinorhizobium meliloti 1021']
ASK WHERE { resource:alternative_cytochrome_C_oxidase_polypeptide_II_transmembrane_protein____SMc01982 property:found_in_taxon resource:Sinorhizobium_meliloti_1021 }
[]
nutrient
SYSTEM
YES
(Q24109996,P703,Q21102918)
action is_in
entity Q21102918
action find
entity Q24109996
relation P703
[ANSWER]
['Q24109996', 'P703', 'Q21102918']
ASK WHERE { resource:Q24109996 property:P703 resource:Q21102918 }
Yes
action is_in
entity Sinorhizobium meliloti 1021
action find
entity alternative cytochrome C oxidase polypeptide II transmembrane protein    SMc01982
relation found in taxon
['alternative cytochrome C oxidase polypeptide II transmembrane protein    SMc01982', 'found in taxon', 'Sinorhizobium meliloti 1021']
ASK WHERE { resource:alternative_cytochrome_C_oxidase_polypeptide_II_transmembrane_protein____SMc01982 property:found_in_taxon resource:Sinorhizobium_meliloti_1021 }
[]
Verification (Boolean) (All)
Verification|3 entities, all direct, 2 are query entities
Q23169436 Q23517451 Q24111234
P688
Q181394
USER
Does GntR family transcriptional regulator    SMa0222 encode succinyl-CoA ligase [ADP-forming] subunit alpha    BSU16100 and GntR family transcriptional regulator    SMa0222 ?
(Q23169436,P688,Q23517451) (Q23169436,P688,Q24111234)
action is_in
entity Q23169436
action intersection
action find_reverse
entity Q23517451
relation P688
action find_reverse
entity Q24111234
relation P688
['Q23169436', 'P688', 'Q23517451'] ['Q23169436', 'P688', 'Q24111234']
ASK WHERE { resource:Q23169436 property:P688 resource:Q24111234 . resource:Q23169436 property:P688 resource:Q23517451 }
GntR family transcriptional regulator    SMa0222 succinyl-CoA ligase [ADP-forming] subunit alpha    BSU16100 GntR family transcriptional regulator    SMa0222
action is_in
entity GntR family transcriptional regulator    SMa0222
action intersection
action find_reverse
entity succinyl-CoA ligase [ADP-forming] subunit alpha    BSU16100
relation encodes
action find_reverse
entity GntR family transcriptional regulator    SMa0222
relation encodes
['GntR family transcriptional regulator    SMa0222', 'encodes', 'succinyl-CoA ligase [ADP-forming] subunit alpha    BSU16100'] ['GntR family transcriptional regulator    SMa0222', 'encodes', 'GntR family transcriptional regulator    SMa0222']
ASK WHERE { resource:GntR_family_transcriptional_regulator____SMa0222 property:encodes resource:GntR_family_transcriptional_regulator____SMa0222 . resource:GntR_family_transcriptional_regulator____SMa0222 property:encodes resource:succinyl-CoA_ligase_[ADP-forming]_subunit_alpha____BSU16100 }
[]
nutrient
SYSTEM
NO and YES respectively
(Q23169436,P688,Q23517451) (Q23169436,P688,Q24111234)
action is_in
entity Q23169436
action intersection
action find_reverse
entity Q23517451
relation P688
action find_reverse
entity Q24111234
relation P688
[ANSWER]
['Q23169436', 'P688', 'Q23517451'] ['Q23169436', 'P688', 'Q24111234']
ASK WHERE { resource:Q23169436 property:P688 resource:Q24111234 . resource:Q23169436 property:P688 resource:Q23517451 }
NO and YES respectively
action is_in
entity GntR family transcriptional regulator    SMa0222
action intersection
action find_reverse
entity succinyl-CoA ligase [ADP-forming] subunit alpha    BSU16100
relation encodes
action find_reverse
entity GntR family transcriptional regulator    SMa0222
relation encodes
['GntR family transcriptional regulator    SMa0222', 'encodes', 'succinyl-CoA ligase [ADP-forming] subunit alpha    BSU16100'] ['GntR family transcriptional regulator    SMa0222', 'encodes', 'GntR family transcriptional regulator    SMa0222']
ASK WHERE { resource:GntR_family_transcriptional_regulator____SMa0222 property:encodes resource:GntR_family_transcriptional_regulator____SMa0222 . resource:GntR_family_transcriptional_regulator____SMa0222 property:encodes resource:succinyl-CoA_ligase_[ADP-forming]_subunit_alpha____BSU16100 }
[]