Simple Question (Direct)
Simple Question
Q21109974
P681
Q5058355
USER
Which cellular components are the components of Cation channel sperm-associated protein 3 ?
(Q21109974,P681,c(Q5058355))
action filter_type
action find
entity Q21109974
relation P681
type Q5058355
['Q21109974', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?b WHERE { resource:Q21109974 property:P681 ?b . ?b rdf:type ontology:Q5058355 }
Cation channel sperm-associated protein 3
action filter_type
action find
entity Cation channel sperm-associated protein 3
relation cell component
type cellular component
['Cation channel sperm-associated protein 3', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?b WHERE { resource:Cation_channel_sperm-associated_protein_3 property:cell_component ?b . ?b rdf:type ontology:cellular_component }
[]
cellular component
Q29548 Q79927 Q14353100
SYSTEM
plasma membrane, endoplasmic reticulum, cell projection
Q79927 Q14353100 Q180436 Q29548
(Q21109974,P681,c(Q5058355))
action filter_type
action find
entity Q21109974
relation P681
type Q5058355
The components of Cation channel sperm-associated protein 3 are [ANSWERS]
['Q21109974', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?b WHERE { resource:Q21109974 property:P681 ?b . ?b rdf:type ontology:Q5058355 }
endoplasmic reticulum cell projection cilium plasma membrane
The components of Cation channel sperm-associated protein 3 are plasma membrane, endoplasmic reticulum and cell projection
plasma membrane endoplasmic reticulum cell projection
action filter_type
action find
entity Cation channel sperm-associated protein 3
relation cell component
type cellular component
['Cation channel sperm-associated protein 3', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?b WHERE { resource:Cation_channel_sperm-associated_protein_3 property:cell_component ?b . ?b rdf:type ontology:cellular_component }
[]
Clarification
Simple Question|Single Entity|Indirect
Q29548
P361
Q5058355
USER
Which cellular components are that one a part of ?
(Q29548,P361,c(Q5058355))
action filter_type
action find
entity Q29548
relation P361
type Q5058355
['Q29548', 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ?s WHERE { resource:Q29548 property:P361 ?s . ?s rdf:type ontology:Q5058355 }
plasma membrane
action filter_type
action find
entity plasma membrane
relation part of
type cellular component
['plasma membrane', 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ?s WHERE { resource:plasma_membrane property:part_of ?s . ?s rdf:type ontology:cellular_component }
[]
cellular component
Clarification for simple ques.
Q29548
SYSTEM
Did you mean plasma membrane ?
Q29548 Q79927 Q14353100
(Q29548,P361,c(Q5058355)) (Q79927,P361,c(Q5058355)) (Q14353100,P361,c(Q5058355))
[ANSWER]
['Q29548', 'P361', {'concept': 'Q5058355'}] ['Q79927', 'P361', {'concept': 'Q5058355'}] ['Q14353100', 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ?s WHERE { resource:Q29548 property:P361 ?s . ?s rdf:type ontology:Q5058355 }
plasma membrane endoplasmic reticulum cell projection
Did you mean plasma membrane ?
plasma membrane
['plasma membrane', 'part of', {'concept': 'cellular component'}] ['endoplasmic reticulum', 'part of', {'concept': 'cellular component'}] ['cell projection', 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ?s WHERE { resource:plasma_membrane property:part_of ?s . ?s rdf:type ontology:cellular_component }
[]
Simple Question (Coreferenced)
USER
Yes
(Q29548,P361,c(Q5058355))
['Q29548', 'P361', {'concept': 'Q5058355'}]
['plasma membrane', 'part of', {'concept': 'cellular component'}]
[]
Q899827 Q22330431 Q14864171
SYSTEM
endomembrane system, unencapsulated part of cell, cell periphery
Q899827 Q22330431 Q14864171
(Q29548,P361,c(Q5058355))
action filter_type
action find
entity Q29548
relation P361
type Q5058355
[ANSWERS] are that one a part of
['Q29548', 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ?s WHERE { resource:Q29548 property:P361 ?s . ?s rdf:type ontology:Q5058355 }
endomembrane system unencapsulated part of cell cell periphery
Endomembrane system, unencapsulated part of cell and cell periphery are that one a part of
endomembrane system unencapsulated part of cell cell periphery
action filter_type
action find
entity plasma membrane
relation part of
type cellular component
['plasma membrane', 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ?s WHERE { resource:plasma_membrane property:part_of ?s . ?s rdf:type ontology:cellular_component }
[]
Clarification
Simple Question|Single Entity|Indirect
Q899827
P361
Q5058355
USER
Which cellular components are parts of that one ?
(c(Q5058355),P361,Q899827)
action filter_type
action find_reverse
entity Q899827
relation P361
type Q5058355
[{'concept': 'Q5058355'}, 'P361', 'Q899827']
SELECT DISTINCT ?h WHERE { ?h property:P361 resource:Q899827 . ?h rdf:type ontology:Q5058355 }
endomembrane system
action filter_type
action find_reverse
entity endomembrane system
relation part of
type cellular component
[{'concept': 'cellular component'}, 'part of', 'endomembrane system']
SELECT DISTINCT ?h WHERE { ?h property:part_of resource:endomembrane_system . ?h rdf:type ontology:cellular_component }
[]
cellular component
Clarification for simple ques.
Q22330431
SYSTEM
Did you mean unencapsulated part of cell ?
Q899827 Q22330431 Q14864171
(c(Q5058355),P361,Q899827) (c(Q5058355),P361,Q22330431) (c(Q5058355),P361,Q14864171)
[ANSWER]
[{'concept': 'Q5058355'}, 'P361', 'Q899827'] [{'concept': 'Q5058355'}, 'P361', 'Q22330431'] [{'concept': 'Q5058355'}, 'P361', 'Q14864171']
SELECT DISTINCT ?h WHERE { ?h property:P361 resource:Q899827 . ?h rdf:type ontology:Q5058355 }
endomembrane system unencapsulated part of cell cell periphery
Did you mean unencapsulated part of cell ?
unencapsulated part of cell
[{'concept': 'cellular component'}, 'part of', 'endomembrane system'] [{'concept': 'cellular component'}, 'part of', 'unencapsulated part of cell'] [{'concept': 'cellular component'}, 'part of', 'cell periphery']
SELECT DISTINCT ?h WHERE { ?h property:part_of resource:endomembrane_system . ?h rdf:type ontology:cellular_component }
[]
Simple Question (Coreferenced)
USER
No, I meant endomembrane system. Could you tell me the answer for that?
(c(Q5058355),P361,Q899827)
Q899827
[{'concept': 'Q5058355'}, 'P361', 'Q899827']
[{'concept': 'cellular component'}, 'part of', 'endomembrane system']
[]
Q29548 Q14860540 Q22328495
SYSTEM
plasma membrane, clathrin-coated pit, spitzenkorper
Q14860540 Q21095308 Q79927 Q29548 Q22328495 Q21109092
(c(Q5058355),P361,Q899827)
action filter_type
action find_reverse
entity Q899827
relation P361
type Q5058355
[ANSWERS] are parts of that one
[{'concept': 'Q5058355'}, 'P361', 'Q899827']
SELECT DISTINCT ?h WHERE { ?h property:P361 resource:Q899827 . ?h rdf:type ontology:Q5058355 }
clathrin-coated pit retromer complex endoplasmic reticulum plasma membrane spitzenkorper nuclear outer membrane-endoplasmic reticulum membrane network
Plasma membrane, clathrin-coated pit and spitzenkorper are parts of that one
plasma membrane clathrin-coated pit spitzenkorper
action filter_type
action find_reverse
entity endomembrane system
relation part of
type cellular component
[{'concept': 'cellular component'}, 'part of', 'endomembrane system']
SELECT DISTINCT ?h WHERE { ?h property:part_of resource:endomembrane_system . ?h rdf:type ontology:cellular_component }
[]
Quantitative Reasoning (All)
Quantitative|Min/Max|Mult. entity type
P129
Q181394 Q8386 Q181394
USER
Which nutrients do max number of drugs and nutrients interact with ?
(c(Q8386)|c(Q181394),P129,c(Q181394))
action argmax
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
[[{'concept': 'Q8386'}, {'concept': 'Q181394'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?n WHERE { { SELECT DISTINCT ( MAX ( ?q ) AS ?r ) { SELECT DISTINCT ?h ( COUNT ( ?l ) AS ?q ) WHERE { { ?l property:P129 ?h . ?h rdf:type ontology:Q181394 . ?l rdf:type ontology:Q8386 } UNION { ?l property:P129 ?h . ?h rdf:type ontology:Q181394 . ?l rdf:type ontology:Q181394 } } GROUP BY ?h } } . { SELECT DISTINCT ?n ( COUNT ( ?u ) AS ?e ) WHERE { VALUES ( ?t ) { ( ontology:Q8386 ) ( ontology:Q181394 ) } . ?u rdf:type ?t } GROUP BY ?n } . FILTER ( ?e = ?r ) }
action argmax
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
[[{'concept': 'drug'}, {'concept': 'nutrient'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?n WHERE { { SELECT DISTINCT ( MAX ( ?q ) AS ?r ) { SELECT DISTINCT ?h ( COUNT ( ?l ) AS ?q ) WHERE { { ?l property:physically_interacts_with ?h . ?h rdf:type ontology:nutrient . ?l rdf:type ontology:drug } UNION { ?l property:physically_interacts_with ?h . ?h rdf:type ontology:nutrient . ?l rdf:type ontology:nutrient } } GROUP BY ?h } } . { SELECT DISTINCT ?n ( COUNT ( ?u ) AS ?e ) WHERE { VALUES ( ?t ) { ( ontology:drug ) ( ontology:nutrient ) } . ?u rdf:type ?t } GROUP BY ?n } . FILTER ( ?e = ?r ) }
[]
nutrient drug nutrient
Q1949517
SYSTEM
5-hydroxytryptamine receptor 2A
Q1949517
(c(Q8386)|c(Q181394),P129,c(Q181394))
action argmax
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
Max number of drugs and nutrients interact with [ANSWER]
[[{'concept': 'Q8386'}, {'concept': 'Q181394'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?n WHERE { { SELECT DISTINCT ( MAX ( ?q ) AS ?r ) { SELECT DISTINCT ?h ( COUNT ( ?l ) AS ?q ) WHERE { { ?l property:P129 ?h . ?h rdf:type ontology:Q181394 . ?l rdf:type ontology:Q8386 } UNION { ?l property:P129 ?h . ?h rdf:type ontology:Q181394 . ?l rdf:type ontology:Q181394 } } GROUP BY ?h } } . { SELECT DISTINCT ?n ( COUNT ( ?u ) AS ?e ) WHERE { VALUES ( ?t ) { ( ontology:Q8386 ) ( ontology:Q181394 ) } . ?u rdf:type ?t } GROUP BY ?n } . FILTER ( ?e = ?r ) }
5-hydroxytryptamine receptor 2A
Max number of drugs and nutrients interact with 5-hydroxytryptamine receptor 2A
5-hydroxytryptamine receptor 2A
action argmax
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
[[{'concept': 'drug'}, {'concept': 'nutrient'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?n WHERE { { SELECT DISTINCT ( MAX ( ?q ) AS ?r ) { SELECT DISTINCT ?h ( COUNT ( ?l ) AS ?q ) WHERE { { ?l property:physically_interacts_with ?h . ?h rdf:type ontology:nutrient . ?l rdf:type ontology:drug } UNION { ?l property:physically_interacts_with ?h . ?h rdf:type ontology:nutrient . ?l rdf:type ontology:nutrient } } GROUP BY ?h } } . { SELECT DISTINCT ?n ( COUNT ( ?u ) AS ?e ) WHERE { VALUES ( ?t ) { ( ontology:drug ) ( ontology:nutrient ) } . ?u rdf:type ?t } GROUP BY ?n } . FILTER ( ?e = ?r ) }
[]
Logical Reasoning (All)
Logical|Intersection|Single_Relation
Q14349455 Q14864171
P681
Q181394
USER
Which nutrients have cell periphery and membrane as cell component ?
AND((c(Q181394),P681,Q14864171), (c(Q181394),P681,Q14349455))
action filter_type
action intersection
action find_reverse
entity Q14864171
relation P681
action find_reverse
entity Q14349455
relation P681
type Q181394
{'AND': [[{'concept': 'Q181394'}, 'P681', 'Q14864171'], [{'concept': 'Q181394'}, 'P681', 'Q14349455']]}
SELECT DISTINCT ?y WHERE { ?y property:P681 resource:Q14864171 . ?y property:P681 resource:Q14349455 . ?y rdf:type ontology:Q181394 }
membrane cell periphery
action filter_type
action intersection
action find_reverse
entity cell periphery
relation cell component
action find_reverse
entity membrane
relation cell component
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'cell component', 'cell periphery'], [{'concept': 'nutrient'}, 'cell component', 'membrane']]}
SELECT DISTINCT ?y WHERE { ?y property:cell_component resource:cell_periphery . ?y property:cell_component resource:membrane . ?y rdf:type ontology:nutrient }
[]
nutrient
Q14902827 Q27548302 Q14906270 Q21496349 Q27553242 Q27548265 Q27548227 Q27547586 Q21123242 Q27549829
SYSTEM
Some of them are Catenin beta-1, hexose transporter HXT7 YDR342C, Neuromodulin, Moesin, hypothetical protein YDR034W-B, Ccw14p YLR390W-A, Mup1p YGR055W, Sng1p YGR197C, cAMP-specific 3',5'-cyclic phosphodiesterase 4B, syntaxin YMR183C
Q27549823 Q27550782 Q27549006 Q27549001 Q27550786 Q27551348 Q27550788 Q27551344 Q27551340 Q27548965 Q27548964 Q21496347 Q21112493 Q27552647 Q27552646 Q27548963 Q27548962 Q27549789 Q27548968 Q27549725 Q21109410 Q27549791 Q27548286 Q21102524 Q27548282 Q21990105 Q27548289 Q21981242 Q27553161 Q21981325 Q27553169 Q27551951 Q27552566 Q27548201 Q27549775 Q27551351 Q27548268 Q27551353 Q27551354 Q21495112 Q27548302 Q21110581 Q4201950 Q27549714 Q27548264 Q27548265 Q21979769 Q27548977 Q27548974 Q27548975 Q27552650 Q27552651 Q21156348 Q21115672 Q5521730 Q423628 Q27552643 Q27553117 Q14902827 Q27553370 Q27553371 Q5572421 Q21990386 Q14873788 Q21123242 Q27551942 Q27547520 Q27551998 Q27551999 Q27547541 Q27553174 Q27547527 Q27549764 Q27552556 Q27553178 Q1634046 Q27549762 Q27549572 Q21112896 Q27551425 Q27549809 Q15316348 Q27549805 Q21136574 Q27549807 Q21120734 Q27549800 Q27548251 Q27549802 Q27553130 Q27549799 Q21495856 Q27551923 Q21981266 Q3860053 Q21154420 Q27550777 Q27552542 Q27550772 Q27553301 Q27553145 Q27547523 Q27547553 Q21498887 Q27550362 Q27552018 Q27549565 Q21984751 Q27549561 Q27553208 Q21491045 Q27548959 Q27551961 Q27549844 Q27551399 Q27549732 Q21990605 Q27549575 Q410974 Q21985381 Q27551932 Q27551934 Q27551935 Q21496011 Q27552633 Q14878873 Q27552636 Q21496351 Q27551443 Q27553154 Q14901868 Q27551997 Q27547547 Q27547544 Q27552024 Q27552023 Q27549556 Q27549554 Q27549559 Q27549763 Q27552539 Q27552032 Q27547492 Q27550829 Q27550828 Q27548236 Q27550781 Q27549534 Q27548233 Q3928887 Q27549829 Q14876145 Q27549588 Q21157907 Q4044985 Q27551948 Q27548998 Q27551941 Q27548308 Q27548926 Q27550753 Q27550752 Q27552604 Q27552603 Q27553242 Q27552030 Q27551434 Q27550759 Q27550758 Q27553121 Q27547460 Q27549546 Q27547462 Q27549540 Q27549541 Q27547467 Q21497145 Q21987305 Q27548897 Q22679669 Q27549623 Q27548226 Q27548227 Q27548224 Q27549837 Q27549526 Q7276719 Q27551423 Q5323620 Q27548947 Q27548184 Q27548930 Q27548182 Q21988139 Q27551981 Q27547581 Q27552597 Q14906270 Q27552595 Q27551956 Q27551957 Q27552612 Q27548936 Q27552616 Q21986904 Q27547585 Q21112430 Q27548993 Q27548230 Q27550741 Q21991844 Q27552585 Q27547565 Q27552047 Q14913173 Q21107313 Q27550749 Q27552043 Q27552567 Q27551309 Q27553235 Q27547477 Q21496248 Q27553239 Q21985631 Q21124505 Q27547573 Q1198053 Q21496349 Q27548196 Q27549754 Q22680298 Q21495542 Q21498713 Q27549843 Q27552581 Q27549599 Q27552583 Q21123119 Q27549596 Q14912141 Q27549593 Q27548902 Q27549591 Q27547592 Q27551390 Q27549753 Q15319182 Q7673856 Q27551977 Q27548903 Q21981636 Q27547532 Q27549720 Q4035578 Q21134447 Q21496579 Q27553220 Q27549600 Q27553226 Q27550734 Q27548304 Q21981220 Q27551316 Q15311709 Q27551362 Q27547514 Q27549531 Q27550812 Q21987415 Q21105594 Q21111181 Q27550798 Q27549830 Q27550796 Q21100778 Q27552532 Q21114501 Q27551374 Q27550790 Q27549852 Q27548911 Q27548913 Q27548914 Q27547503 Q21149252 Q21114993 Q27551389 Q21986193 Q27548211 Q27552624 Q27548935 Q27548290 Q27547586 Q21985068 Q27553113 Q21135422 Q27552053 Q21109298 Q21989361 Q27549615 Q27548219 Q27548218 Q27549611 Q27552627 Q27548212 Q21979950 Q27553107 Q27547506 Q15331521 Q27552577
AND((c(Q181394),P681,Q14864171), (c(Q181394),P681,Q14349455))
action filter_type
action intersection
action find_reverse
entity Q14864171
relation P681
action find_reverse
entity Q14349455
relation P681
type Q181394
[ANSWERS] have cell periphery and membrane as cell component
{'AND': [[{'concept': 'Q181394'}, 'P681', 'Q14864171'], [{'concept': 'Q181394'}, 'P681', 'Q14349455']]}
SELECT DISTINCT ?y WHERE { ?y property:P681 resource:Q14864171 . ?y property:P681 resource:Q14349455 . ?y rdf:type ontology:Q181394 }
GPI-anchored mannoprotein YER011W Mg(2+) transporter ALR1 YOL130W alpha-1,3-mannosyltransferase MNT2 YGL257C Fhn1p YGR131W Bre4p YDL231C hypothetical protein YGR026W aminophospholipid-translocating P4-type ATPase DNF1 YER166W Pom152p YMR129W Ssu1p YPL092W Fit1p YDR534C hypothetical protein YLR326W Ezrin Na(+)/H(+) exchange regulatory cofactor NHE-RF1 long-chain fatty acid transporter FAT1 YBR041W Sln1p YIL147C Pst1p YDR055W Ras family GTPase RAS1 YOR101W hexose transporter HXT10 YFL011W Srf1p YDL133W hypothetical protein YOL019W Axin-1 Vtc4p YJL012C phospholipid-translocating ATPase RSB1 YOR049C Disks large homolog 4 phosphatidylinositol 4,5-bisphosphate-binding protein YNL047C Scavenger receptor class A member 3 hypothetical protein YLR042C Cadherin-5 Seg2p YKL105C Vang-like protein 2 Sag1p YJR004C Nvj2p YPR091C Git1p YCR098C Yop1p YPR028W uracil permease YBR021W cornichon family protein YGL054C serine/threonine protein kinase YCK1 YHR135C azole transporter YGR224W purine-cytosine permease YER060W-A Claudin-12 hexose transporter HXT7 YDR342C Uncharacterized protein C2orf82 Integrin alpha-3 Bit61p YJL058C osmosensor SHO1 YER118C Ccw14p YLR390W-A Ephrin type-A receptor 5 ATP-binding cassette multidrug transporter PDR15 YDR406W Trk2p YKR050W Aga1p YNR044W Pmp3p YDR276C Vht1p YGR065C Ephrin-A5 Calcium and integrin-binding protein 1 Neuromodulin Tyrosine-protein kinase Fyn Ste18p YJR086W putative lipase YBR067C Catenin beta-1 Sed1p YDR077W hypothetical protein YOL075C Excitatory amino acid transporter 1 NADPH oxidase 4 Hematopoietic progenitor cell antigen CD34 cAMP-specific 3',5'-cyclic phosphodiesterase 4B hexose transporter HXT11 YOL156W Tir3p YIL011W Hol1p YNR055C Rho family GTPase RHO4 YKR055W glucose-inactivated glycerol proton symporter STL1 YDR536W Tok1p YJL093C Dan4p YJR151C Ras family GTPase RAS2 YNL098C hexose transporter HXT3 YDR345C tricalbin YNL087W Catenin beta-1 Dur3p YHL016C hexose transporter HXT5 YHR096C Cadherin-5 Ptr2p YKR093W Ysp2p YDR326C Substance-P receptor proteolipid ATPase YEL017C-A Vang-like protein 2 Flo10p YKR102W Lymphatic vessel endothelial hyaluronic acid receptor 1 spermine transporter YPR156C Nce102p YPR149W sterol esterase YLR020C ATP-binding cassette multidrug transporter PDR5 YOR153W hypothetical protein YMR279C Intercellular adhesion molecule 2 Aqr1p YNL065W Calcium and integrin-binding protein 1 Moesin Ras-related C3 botulinum toxin substrate 3 Bor1p YNL275W GTPase-activating protein SEC13 YLR208W maltose permease YBR298C palmitoyltransferase PFA5 YDR459C chitin synthase CHS1 YNL192W tricalbin YOR086C Yhk8p YHR048W Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3 Rgi1p YER067W Hxt14p YNL318C myo-inositol transporter ITR1 YDR497C Tyrosine-protein kinase Fyn glutathione exchanger YCL073C Enb1p YOL158C Protein kinase C epsilon type ATP-binding cassette multidrug transporter PDR11 YIL013C hexose transporter HXT4 YHR092C dynamin-like GTPase SEY1 YOR165W phosphatidylinositol transporter YNL231C acylglycerol lipase YKL094W Selection and upkeep of intraepithelial T-cells protein 1 mannoprotein YOL155C Myelin basic protein Ras-related C3 botulinum toxin substrate 3 thiamine transporter YOR192C flocculin FLO5 YHR211W oxysterol-binding protein related protein OSH2 YDL019C Vascular endothelial growth factor receptor 2 siderophore transporter YHL040C Platelet endothelial cell adhesion molecule serine/threonine protein kinase YCK2 YNL154C Radixin SNAP receptor SNC1 YAL030W Fit2p YOR382W Vascular cell adhesion protein 1 S-methylmethionine permease MMP1 YLL061W histidine permease YGR191W putative permease SEO1 YAL067C peroxisome biogenesis protein YGR004W Sec63 complex subunit SEC66 YBR171W bifunctional phosphatidyl-N-methylethanolamine N-methyltransferase/phosphatidyl-N-dimethylethanolamine N-methyltransferase YJR073C cation transporter YIL121W End3p YNL084C steryl deacetylase YGR263C Pns1p YOR161C Ist2p YBR086C hexose transporter HXT9 YJL219W hexose transporter HXT1 YHR094C DUP240 family protein YCR007C hypothetical protein YNL194C SPX domain-containing inorganic phosphate transporter YCR037C Rho family GTPase RHO1 YPR165W phosphoinositide binding protein ATG18 YFR021W Radixin syntaxin YMR183C Myelin basic protein hexose transporter HXT15 YDL245C Intercellular adhesion molecule 2 Neurogenic locus notch homolog protein 1 putative Mg(2+) transporter ALR2 YFL050C purine-cytosine permease YER056C ATP-binding cassette transporter SNQ2 YDR011W hypothetical protein YHL026C Fig2p YCR089W uridine permease YBL042C spermine transporter YGR138C glucose sensor YDL194W Fit3p YOR383C hypothetical protein YDR034W-B hypothetical protein YDL012C Fen2p YCR028C Hnm1p YGL077C putative Na(+)-exporting P-type ATPase ENA5 YDR038C ATP-binding cassette transporter YOR1 YGR281W H(+)-exporting P2-type ATPase PMA2 YPL036W Sfk1p YKL051W high-affinity Zn(2+) transporter ZRT1 YGL255W Qdr3p YBR043C Fps1p YLL043W hexose transporter HXT6 YDR343C Cadherin-1 Protein naked cuticle homolog 2 SPX domain-containing inorganic phosphate transporter YJL198W Ezrin Rtn1p YDR233C Sfb3p YHR098C Mup1p YGR055W ATP-binding cassette multidrug transporter PDR12 YPL058C Rsn1p YMR266W Thi73p YLR004C Transforming protein RhoA Fmp45p YDL222C Adhesion G protein-coupled receptor E1 transglycosylase YGR189C Rtn2p YDL204W Ccw12p YLR110C syntaxin YPL232W SLIT and NTRK-like protein 6 putative ammonium permease ATO3 YDR384C hexose transporter HXT2 YMR011W aminophospholipid-translocating P4-type ATPase DNF2 YDR093W Neuromodulin hypothetical protein YCL048W-A Mch4p YOL119C 1,3-beta-D-glucan synthase YLR342W Ina1p YLR413W Sfh5p YJL145W hypothetical protein YFL051C Serine/threonine-protein kinase 26 galactose permease GAL2 YLR081W Alpha-(1,3)-fucosyltransferase 4 putative GPI-anchored mannoprotein YOR010C Dan1p YJR150C hypothetical protein YPR071W Thrombospondin type-1 domain-containing protein 1 lysophospholipase YMR006C hypothetical protein YIL166C Pun1p YLR414C Excitatory amino acid transporter 1 Prohibitin-2 ATP-binding cassette multidrug transporter PDR10 YOR328W Sur7p YML052W alpha-glucoside permease YJR160C flocculin FLO1 YAR050W flavodoxin-like fold family protein YCR004C dolichyl-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-dolichol alpha-1,2- glucosyltransferase YGR227W Na(+)/H(+) exchange regulatory cofactor NHE-RF1 allantoate permease YJR152W Receptor-type tyrosine-protein phosphatase C SLIT and NTRK-like protein 6 Na(+)/Li(+)-exporting P-type ATPase ENA1 YDR040C Cell division control protein 42 homolog Moesin ATP-binding cassette sterol transporter AUS1 YOR011W glutamine permease GNP1 YDR508C Uncharacterized protein C2orf82 homolog Ephrin-A5 Disks large homolog 4 peroxisome biogenesis protein YLR324W hexose transporter HXT17 YNR072W Amf1p YOR378W Slp1p YOR154W Protein naked cuticle homolog 2 Tir4p YOR009W Integrin alpha-3 Irc8p YJL051W Afb1p YLR040C H(+)-transporting V0 sector ATPase subunit c' YPL234C Spi1p YER150W SNAP receptor SNC2 YOR327C amino acid transporter TAT1 YBR069C Adhesion G protein-coupled receptor E1 Substance-P receptor glutathione exchanger YKR106W Ras family GTPase RSR1 YGR152C Neuronal acetylcholine receptor subunit alpha-2 Eis1p YMR031C Rch1p YMR034C Hematopoietic progenitor cell antigen CD34 NADPH oxidase 4 Lymphatic vessel endothelial hyaluronic acid receptor 1 Nag1p YGR031C-A Emp65p YER140W dolichyl-phosphate beta-D-mannosyltransferase YPR183W sphinganine kinase LCB4 YOR171C Pry3p YJL078C Axin-1 thiamine transporter THI7 YLR237W Cell division control protein 42 homolog hypothetical protein YGR149W hexose transporter HXT16 YJR158W lysophospholipase YMR008C Dtr1p YBR180W Serine/threonine-protein phosphatase 5 Serine/threonine-protein kinase 26 Neuronal acetylcholine receptor subunit alpha-2 Fet4p YMR319C phosphatidylethanolamine N-methyltransferase YGR157W alpha-glucoside permease YDL247W Claudin-12 Jen1p YKL217W Integrin beta-1-binding protein 1 Dip5p YPL265W borate transporter YML116W Rho family GTPase CDC42 YLR229C fluoride transporter YPL279C multidrug transporter YIL120W Rho family GTPase RHO2 YNL090W Tda6p YPR157W Phosphodiesterase Serine/threonine-protein phosphatase 5 hexose transporter HXT8 YJL214W Neurogenic locus notch homolog protein 1 inositol phosphosphingolipid phospholipase YER019W Yct1p YLL055W Flr1p YBR008C Trk1p YJL129C Sng1p YGR197C Integrin beta-1-binding protein 1 Brr6p YGL247W Scavenger receptor class A member 3 Seg1p YMR086W Protein kinase C epsilon type Prohibitin-2 1,3-beta-glucan synthase GSC2 YGR032W myo-inositol transporter ITR2 YOL103W glucose sensor YDL138W bifunctional glutathione transferase/peroxidase YIR038C Tna1p YGR260W Tpo4p YOR273C Alpha-(1,3)-fucosyltransferase 4 Esbp6p YNL125C Tpo1p YLL028W Transforming protein RhoA fluoride transporter YOR390W
Catenin beta-1, hexose transporter HXT7 YDR342C, Neuromodulin, Moesin, hypothetical protein YDR034W-B, Ccw14p YLR390W-A, Mup1p YGR055W, Sng1p YGR197C, cAMP-specific 3',5'-cyclic phosphodiesterase 4B and syntaxin YMR183C have cell periphery and membrane as cell component
Catenin beta-1 hexose transporter HXT7 YDR342C Neuromodulin Moesin hypothetical protein YDR034W-B Ccw14p YLR390W-A Mup1p YGR055W Sng1p YGR197C cAMP-specific 3',5'-cyclic phosphodiesterase 4B syntaxin YMR183C
action filter_type
action intersection
action find_reverse
entity cell periphery
relation cell component
action find_reverse
entity membrane
relation cell component
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'cell component', 'cell periphery'], [{'concept': 'nutrient'}, 'cell component', 'membrane']]}
SELECT DISTINCT ?y WHERE { ?y property:cell_component resource:cell_periphery . ?y property:cell_component resource:membrane . ?y rdf:type ontology:nutrient }
[]
Simple Question (Coreferenced)
Simple Question|Mult. Entity
Q14902827 Q27548302 Q14906270 Q21496349 Q27553242 Q27548265 Q27548227 Q27547586 Q21123242 Q27549829
P702
Q863908
USER
Which nucleic acid sequences encode those nutrients ?
(Q14902827,P702,c(Q863908)) (Q27548302,P702,c(Q863908)) (Q14906270,P702,c(Q863908)) (Q21496349,P702,c(Q863908)) (Q27553242,P702,c(Q863908)) (Q27548265,P702,c(Q863908)) (Q27548227,P702,c(Q863908)) (Q27547586,P702,c(Q863908)) (Q21123242,P702,c(Q863908)) (Q27549829,P702,c(Q863908))
action filter_type
action find
entity prev_answer
relation P702
type Q863908
['Q14902827', 'P702', {'concept': 'Q863908'}] ['Q27548302', 'P702', {'concept': 'Q863908'}] ['Q14906270', 'P702', {'concept': 'Q863908'}] ['Q21496349', 'P702', {'concept': 'Q863908'}] ['Q27553242', 'P702', {'concept': 'Q863908'}] ['Q27548265', 'P702', {'concept': 'Q863908'}] ['Q27548227', 'P702', {'concept': 'Q863908'}] ['Q27547586', 'P702', {'concept': 'Q863908'}] ['Q21123242', 'P702', {'concept': 'Q863908'}] ['Q27549829', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?a WHERE { ?a rdf:type ontology:Q863908 . ?w property:P702 ?a . VALUES ( ?w ) { ( resource:Q27549823 ) ( resource:Q27550782 ) ( resource:Q27549006 ) } }
Catenin beta-1 hexose transporter HXT7 YDR342C Neuromodulin Moesin hypothetical protein YDR034W-B Ccw14p YLR390W-A Mup1p YGR055W Sng1p YGR197C cAMP-specific 3',5'-cyclic phosphodiesterase 4B syntaxin YMR183C
action filter_type
action find
entity prev_answer
relation encoded by
type nucleic acid sequence
['Catenin beta-1', 'encoded by', {'concept': 'nucleic acid sequence'}] ['hexose transporter HXT7 YDR342C', 'encoded by', {'concept': 'nucleic acid sequence'}] ['Neuromodulin', 'encoded by', {'concept': 'nucleic acid sequence'}] ['Moesin', 'encoded by', {'concept': 'nucleic acid sequence'}] ['hypothetical protein YDR034W-B', 'encoded by', {'concept': 'nucleic acid sequence'}] ['Ccw14p YLR390W-A', 'encoded by', {'concept': 'nucleic acid sequence'}] ['Mup1p YGR055W', 'encoded by', {'concept': 'nucleic acid sequence'}] ['Sng1p YGR197C', 'encoded by', {'concept': 'nucleic acid sequence'}] ["cAMP-specific 3',5'-cyclic phosphodiesterase 4B", 'encoded by', {'concept': 'nucleic acid sequence'}] ['syntaxin YMR183C', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?a WHERE { ?a rdf:type ontology:nucleic_acid_sequence . ?w property:encoded_by ?a . VALUES ( ?w ) { ( resource:GPI-anchored_mannoprotein_YER011W ) ( resource:Mg(2+)_transporter_ALR1_YOL130W ) ( resource:alpha-1,3-mannosyltransferase_MNT2_YGL257C ) } }
[]
nucleic acid sequence
Q18030407 Q14902796 Q14906269
SYSTEM
PDE4B, Ctnnb1, Gap43
Q14902796 Q27541144 Q14906269 Q18252421 Q27546153 Q27541108 Q27541069 Q27540392 Q18030407 Q27542736
(Q14902827,P702,c(Q863908)) (Q27548302,P702,c(Q863908)) (Q14906270,P702,c(Q863908)) (Q21496349,P702,c(Q863908)) (Q27553242,P702,c(Q863908)) (Q27548265,P702,c(Q863908)) (Q27548227,P702,c(Q863908)) (Q27547586,P702,c(Q863908)) (Q21123242,P702,c(Q863908)) (Q27549829,P702,c(Q863908))
action filter_type
action find
entity prev_answer
relation P702
type Q863908
[ANSWERS] encode those nutrients
['Q14902827', 'P702', {'concept': 'Q863908'}] ['Q27548302', 'P702', {'concept': 'Q863908'}] ['Q14906270', 'P702', {'concept': 'Q863908'}] ['Q21496349', 'P702', {'concept': 'Q863908'}] ['Q27553242', 'P702', {'concept': 'Q863908'}] ['Q27548265', 'P702', {'concept': 'Q863908'}] ['Q27548227', 'P702', {'concept': 'Q863908'}] ['Q27547586', 'P702', {'concept': 'Q863908'}] ['Q21123242', 'P702', {'concept': 'Q863908'}] ['Q27549829', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?a WHERE { ?a rdf:type ontology:Q863908 . ?w property:P702 ?a . VALUES ( ?w ) { ( resource:Q27549823 ) ( resource:Q27550782 ) ( resource:Q27549006 ) } }
Ctnnb1 hexose transporter HXT7 YDR342C Gap43 Msn hypothetical protein YDR034W-B Ccw14p YLR390W-A Mup1p YGR055W Sng1p YGR197C PDE4B syntaxin YMR183C
PDE4B, Ctnnb1 and Gap43 encode those nutrients
PDE4B Ctnnb1 Gap43
action filter_type
action find
entity prev_answer
relation encoded by
type nucleic acid sequence
['Catenin beta-1', 'encoded by', {'concept': 'nucleic acid sequence'}] ['hexose transporter HXT7 YDR342C', 'encoded by', {'concept': 'nucleic acid sequence'}] ['Neuromodulin', 'encoded by', {'concept': 'nucleic acid sequence'}] ['Moesin', 'encoded by', {'concept': 'nucleic acid sequence'}] ['hypothetical protein YDR034W-B', 'encoded by', {'concept': 'nucleic acid sequence'}] ['Ccw14p YLR390W-A', 'encoded by', {'concept': 'nucleic acid sequence'}] ['Mup1p YGR055W', 'encoded by', {'concept': 'nucleic acid sequence'}] ['Sng1p YGR197C', 'encoded by', {'concept': 'nucleic acid sequence'}] ["cAMP-specific 3',5'-cyclic phosphodiesterase 4B", 'encoded by', {'concept': 'nucleic acid sequence'}] ['syntaxin YMR183C', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?a WHERE { ?a rdf:type ontology:nucleic_acid_sequence . ?w property:encoded_by ?a . VALUES ( ?w ) { ( resource:GPI-anchored_mannoprotein_YER011W ) ( resource:Mg(2+)_transporter_ALR1_YOL130W ) ( resource:alpha-1,3-mannosyltransferase_MNT2_YGL257C ) } }
[]
Simple Question (Coreferenced)
Simple Question|Mult. Entity
Q18030407 Q14902796 Q14906269
P684
Q863908
USER
Which nucleic acid sequences have those ones as their orthologous gene ?
(c(Q863908),P684,Q18030407) (c(Q863908),P684,Q14902796) (c(Q863908),P684,Q14906269)
action filter_type
action find
entity prev_answer
relation P684
type Q863908
[{'concept': 'Q863908'}, 'P684', 'Q18030407'] [{'concept': 'Q863908'}, 'P684', 'Q14902796'] [{'concept': 'Q863908'}, 'P684', 'Q14906269']
SELECT DISTINCT ?x WHERE { VALUES ( ?b ) { ( resource:Q14902796 ) ( resource:Q27541144 ) ( resource:Q14906269 ) } . ?x rdf:type ontology:Q863908 . ?b property:P684 ?x }
PDE4B Ctnnb1 Gap43
action filter_type
action find
entity prev_answer
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'PDE4B'] [{'concept': 'nucleic acid sequence'}, 'ortholog', 'Ctnnb1'] [{'concept': 'nucleic acid sequence'}, 'ortholog', 'Gap43']
SELECT DISTINCT ?x WHERE { VALUES ( ?b ) { ( resource:Ctnnb1 ) ( resource:hexose_transporter_HXT7_YDR342C ) ( resource:Gap43 ) } . ?x rdf:type ontology:nucleic_acid_sequence . ?b property:ortholog ?x }
[]
nucleic acid sequence
Q18252944 Q14902794 Q14906268
SYSTEM
Pde4b, CTNNB1, GAP43
Q18252944 Q14902794 Q14906268
(c(Q863908),P684,Q18030407) (c(Q863908),P684,Q14902796) (c(Q863908),P684,Q14906269)
action filter_type
action find
entity prev_answer
relation P684
type Q863908
[ANSWERS] have those ones as their orthologous gene
[{'concept': 'Q863908'}, 'P684', 'Q18030407'] [{'concept': 'Q863908'}, 'P684', 'Q14902796'] [{'concept': 'Q863908'}, 'P684', 'Q14906269']
SELECT DISTINCT ?x WHERE { VALUES ( ?b ) { ( resource:Q14902796 ) ( resource:Q27541144 ) ( resource:Q14906269 ) } . ?x rdf:type ontology:Q863908 . ?b property:P684 ?x }
Pde4b CTNNB1 GAP43
Pde4b, CTNNB1 and GAP43 have those ones as their orthologous gene
Pde4b CTNNB1 GAP43
action filter_type
action find
entity prev_answer
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'PDE4B'] [{'concept': 'nucleic acid sequence'}, 'ortholog', 'Ctnnb1'] [{'concept': 'nucleic acid sequence'}, 'ortholog', 'Gap43']
SELECT DISTINCT ?x WHERE { VALUES ( ?b ) { ( resource:Ctnnb1 ) ( resource:hexose_transporter_HXT7_YDR342C ) ( resource:Gap43 ) } . ?x rdf:type ontology:nucleic_acid_sequence . ?b property:ortholog ?x }
[]
Simple Question (Coreferenced)
Simple Question|Mult. Entity
Q18252944 Q14902794 Q14906268
P684
Q863908
USER
What are the name of the species that have those ones as their orthologous gene ?
(c(Q863908),P684,Q18252944) (c(Q863908),P684,Q14902794) (c(Q863908),P684,Q14906268)
action filter_type
action find
entity prev_answer
relation P684
type Q863908
[{'concept': 'Q863908'}, 'P684', 'Q18252944'] [{'concept': 'Q863908'}, 'P684', 'Q14902794'] [{'concept': 'Q863908'}, 'P684', 'Q14906268']
SELECT DISTINCT ?w WHERE { VALUES ( ?v ) { ( resource:Q18252944 ) ( resource:Q14902794 ) ( resource:Q14906268 ) } . ?v property:P684 ?w . ?w rdf:type ontology:Q863908 }
Pde4b CTNNB1 GAP43
action filter_type
action find
entity prev_answer
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'Pde4b'] [{'concept': 'nucleic acid sequence'}, 'ortholog', 'CTNNB1'] [{'concept': 'nucleic acid sequence'}, 'ortholog', 'GAP43']
SELECT DISTINCT ?w WHERE { VALUES ( ?v ) { ( resource:Pde4b ) ( resource:CTNNB1 ) ( resource:GAP43 ) } . ?v property:ortholog ?w . ?w rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18030407 Q14902796 Q14906269
SYSTEM
PDE4B, Ctnnb1, Gap43
Q18030407 Q14902796 Q14906269
(c(Q863908),P684,Q18252944) (c(Q863908),P684,Q14902794) (c(Q863908),P684,Q14906268)
action filter_type
action find
entity prev_answer
relation P684
type Q863908
The name of the species that have those ones as their orthologous gene are [ANSWERS]
[{'concept': 'Q863908'}, 'P684', 'Q18252944'] [{'concept': 'Q863908'}, 'P684', 'Q14902794'] [{'concept': 'Q863908'}, 'P684', 'Q14906268']
SELECT DISTINCT ?w WHERE { VALUES ( ?v ) { ( resource:Q18252944 ) ( resource:Q14902794 ) ( resource:Q14906268 ) } . ?v property:P684 ?w . ?w rdf:type ontology:Q863908 }
PDE4B Ctnnb1 Gap43
The name of the species that have those ones as their orthologous gene are PDE4B, Ctnnb1 and Gap43
PDE4B Ctnnb1 Gap43
action filter_type
action find
entity prev_answer
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'Pde4b'] [{'concept': 'nucleic acid sequence'}, 'ortholog', 'CTNNB1'] [{'concept': 'nucleic acid sequence'}, 'ortholog', 'GAP43']
SELECT DISTINCT ?w WHERE { VALUES ( ?v ) { ( resource:Pde4b ) ( resource:CTNNB1 ) ( resource:GAP43 ) } . ?v property:ortholog ?w . ?w rdf:type ontology:nucleic_acid_sequence }
[]