Simple Question (Direct)
Simple Question
Q24093292
P682
Q3249551
USER
What is the process that sulfate adenylyltransferase subunit 2    Psyr_4128 is involved in ?
(Q24093292,P682,c(Q3249551))
action filter_type
action find
entity Q24093292
relation P682
type Q3249551
['Q24093292', 'P682', {'concept': 'Q3249551'}]
SELECT DISTINCT ?l WHERE { resource:Q24093292 property:P682 ?l . ?l rdf:type ontology:Q3249551 }
sulfate adenylyltransferase subunit 2    Psyr_4128
action filter_type
action find
entity sulfate adenylyltransferase subunit 2    Psyr_4128
relation biological process
type process
['sulfate adenylyltransferase subunit 2    Psyr_4128', 'biological process', {'concept': 'process'}]
SELECT DISTINCT ?l WHERE { resource:sulfate_adenylyltransferase_subunit_2____Psyr_4128 property:biological_process ?l . ?l rdf:type ontology:process }
[]
process
Q1057
SYSTEM
metabolic process
Q1057
(Q24093292,P682,c(Q3249551))
action filter_type
action find
entity Q24093292
relation P682
type Q3249551
The process that sulfate adenylyltransferase subunit 2 Psyr_4128 is involved in is a [ANSWER]
['Q24093292', 'P682', {'concept': 'Q3249551'}]
SELECT DISTINCT ?l WHERE { resource:Q24093292 property:P682 ?l . ?l rdf:type ontology:Q3249551 }
metabolic process
The process that sulfate adenylyltransferase subunit 2 Psyr_4128 is involved in is a metabolic process
metabolic process
action filter_type
action find
entity sulfate adenylyltransferase subunit 2    Psyr_4128
relation biological process
type process
['sulfate adenylyltransferase subunit 2    Psyr_4128', 'biological process', {'concept': 'process'}]
SELECT DISTINCT ?l WHERE { resource:sulfate_adenylyltransferase_subunit_2____Psyr_4128 property:biological_process ?l . ?l rdf:type ontology:process }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q24093292
P688
Q863908
USER
Which nucleic acid sequence encodes sulfate adenylyltransferase subunit 2    Psyr_4128 ?
(c(Q863908),P688,Q24093292)
action filter_type
action find_reverse
entity Q24093292
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q24093292']
SELECT DISTINCT ?r WHERE { ?r property:P688 resource:Q24093292 . ?r rdf:type ontology:Q863908 }
sulfate adenylyltransferase subunit 2    Psyr_4128
action filter_type
action find_reverse
entity sulfate adenylyltransferase subunit 2    Psyr_4128
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'sulfate adenylyltransferase subunit 2    Psyr_4128']
SELECT DISTINCT ?r WHERE { ?r property:encodes resource:sulfate_adenylyltransferase_subunit_2____Psyr_4128 . ?r rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23146474
SYSTEM
sulfate adenylyltransferase subunit 2    Psyr_4128
Q23146474
(c(Q863908),P688,Q24093292)
action filter_type
action find_reverse
entity Q24093292
relation P688
type Q863908
Sulfate adenylyltransferase subunit 2 Psyr 4128 encodes sulfate adenylyltransferase subunit 2 Psyr_4128
[{'concept': 'Q863908'}, 'P688', 'Q24093292']
SELECT DISTINCT ?r WHERE { ?r property:P688 resource:Q24093292 . ?r rdf:type ontology:Q863908 }
sulfate adenylyltransferase subunit 2    Psyr_4128
Sulfate adenylyltransferase subunit 2 Psyr 4128 encodes sulfate adenylyltransferase subunit 2 Psyr_4128
sulfate adenylyltransferase subunit 2    Psyr_4128
action filter_type
action find_reverse
entity sulfate adenylyltransferase subunit 2    Psyr_4128
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'sulfate adenylyltransferase subunit 2    Psyr_4128']
SELECT DISTINCT ?r WHERE { ?r property:encodes resource:sulfate_adenylyltransferase_subunit_2____Psyr_4128 . ?r rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23146474
P703
Q631147
USER
Where is that nucleic acid sequence found ?
(Q23146474,P703,c(Q631147))
action filter_type
action find
entity Q23146474
relation P703
type Q631147
['Q23146474', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?j WHERE { resource:Q23146474 property:P703 ?j . ?j rdf:type ontology:Q631147 }
sulfate adenylyltransferase subunit 2    Psyr_4128
action filter_type
action find
entity sulfate adenylyltransferase subunit 2    Psyr_4128
relation found in taxon
type infraspecific name
['sulfate adenylyltransferase subunit 2    Psyr_4128', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?j WHERE { resource:sulfate_adenylyltransferase_subunit_2____Psyr_4128 property:found_in_taxon ?j . ?j rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21079490
SYSTEM
Pseudomonas syringae pv. syringae B728a
Q21079490
(Q23146474,P703,c(Q631147))
action filter_type
action find
entity Q23146474
relation P703
type Q631147
That nucleic acid sequence is found in [ANSWER]
['Q23146474', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?j WHERE { resource:Q23146474 property:P703 ?j . ?j rdf:type ontology:Q631147 }
Pseudomonas syringae pv. syringae B728a
That nucleic acid sequence is found in Pseudomonas syringae pv. syringae B728a
Pseudomonas syringae pv. syringae B728a
action filter_type
action find
entity sulfate adenylyltransferase subunit 2    Psyr_4128
relation found in taxon
type infraspecific name
['sulfate adenylyltransferase subunit 2    Psyr_4128', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?j WHERE { resource:sulfate_adenylyltransferase_subunit_2____Psyr_4128 property:found_in_taxon ?j . ?j rdf:type ontology:infraspecific_name }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q24267764
Q631147
USER
And also tell me about putative ribose ABC transport system ATP-binding component    KPHS_14290?
(Q24267764,P703,c(Q631147))
action filter_type
action find
entity Q24267764
relation P703
type Q631147
['Q24267764', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?y WHERE { resource:Q24267764 property:P703 ?y . ?y rdf:type ontology:Q631147 }
putative ribose ABC transport system ATP-binding component    KPHS_14290
action filter_type
action find
entity putative ribose ABC transport system ATP-binding component    KPHS_14290
relation found in taxon
type infraspecific name
['putative ribose ABC transport system ATP-binding component    KPHS_14290', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?y WHERE { resource:putative_ribose_ABC_transport_system_ATP-binding_component____KPHS_14290 property:found_in_taxon ?y . ?y rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102939
SYSTEM
Klebsiella pneumoniae subsp. pneumoniae HS11286
Q21102939
(Q24267764,P703,c(Q631147))
action filter_type
action find
entity Q24267764
relation P703
type Q631147
[ANSWER]
['Q24267764', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?y WHERE { resource:Q24267764 property:P703 ?y . ?y rdf:type ontology:Q631147 }
Klebsiella pneumoniae subsp. pneumoniae HS11286
Klebsiella pneumoniae subsp. pneumoniae HS11286
action filter_type
action find
entity putative ribose ABC transport system ATP-binding component    KPHS_14290
relation found in taxon
type infraspecific name
['putative ribose ABC transport system ATP-binding component    KPHS_14290', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?y WHERE { resource:putative_ribose_ABC_transport_system_ATP-binding_component____KPHS_14290 property:found_in_taxon ?y . ?y rdf:type ontology:infraspecific_name }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Single entity type|Indirect
P703
Q631147 Q863908
USER
How many infraspecific names are the taxon to which approximately the same number of nucleic acid sequences belongs to as that infraspecific name ?
(c(Q863908),P703,c(Q631147))
action count
action approx
action find_reverse_tuple_counts
relation P703
type Q631147
type Q863908
action count
action filter_type
action find
entity Q21102939
relation P703
type Q631147
[{'concept': 'Q863908'}, 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ( COUNT ( ?k ) AS ?w ) WHERE { { SELECT DISTINCT ?k ( COUNT ( ?l ) AS ?u ) WHERE { ?l property:P703 ?k . ?k rdf:type ontology:Q631147 . ?l rdf:type ontology:Q863908 } GROUP BY ?k } . FILTER ( ?u = ?z ) . { SELECT DISTINCT ( COUNT ( ?s ) AS ?z ) WHERE { resource:Q21102939 property:P703 ?s . ?s rdf:type ontology:Q631147 } } }
action count
action approx
action find_reverse_tuple_counts
relation found in taxon
type infraspecific name
type nucleic acid sequence
action count
action filter_type
action find
entity Klebsiella pneumoniae subsp. pneumoniae HS11286
relation found in taxon
type infraspecific name
[{'concept': 'nucleic acid sequence'}, 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ( COUNT ( ?k ) AS ?w ) WHERE { { SELECT DISTINCT ?k ( COUNT ( ?l ) AS ?u ) WHERE { ?l property:found_in_taxon ?k . ?k rdf:type ontology:infraspecific_name . ?l rdf:type ontology:nucleic_acid_sequence } GROUP BY ?k } . FILTER ( ?u = ?z ) . { SELECT DISTINCT ( COUNT ( ?s ) AS ?z ) WHERE { resource:Klebsiella_pneumoniae_subsp._pneumoniae_HS11286 property:found_in_taxon ?s . ?s rdf:type ontology:infraspecific_name } } }
[]
infraspecific name nucleic acid sequence
SYSTEM
29
Q21102993 Q21102995 Q21102996 Q21102997 Q27510868 Q21079489 Q21102941 Q21102947 Q21102930 Q21102924 Q21102927 Q21102986 Q21102928 Q21102918 Q21079490 Q21079491 Q21102944 Q21102950 Q21102953 Q23309229 Q21102972 Q21102970 Q21102971 Q21064863 Q21102931 Q21102937 Q21102934 Q21102938 Q21102939
(c(Q863908),P703,c(Q631147))
action count
action approx
action find_reverse_tuple_counts
relation P703
type Q631147
type Q863908
action count
action filter_type
action find
entity Q21102939
relation P703
type Q631147
[ANSWER]
[{'concept': 'Q863908'}, 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ( COUNT ( ?k ) AS ?w ) WHERE { { SELECT DISTINCT ?k ( COUNT ( ?l ) AS ?u ) WHERE { ?l property:P703 ?k . ?k rdf:type ontology:Q631147 . ?l rdf:type ontology:Q863908 } GROUP BY ?k } . FILTER ( ?u = ?z ) . { SELECT DISTINCT ( COUNT ( ?s ) AS ?z ) WHERE { resource:Q21102939 property:P703 ?s . ?s rdf:type ontology:Q631147 } } }
Burkholderia mallei ATCC 23344 Burkholderia pseudomallei K96243 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Salmonella enterica subsp. enterica serovar Typhi str. CT18 Saccharomyces cerevisiae S288c Pseudomonas putida KT2440 Shigella flexneri 2a str. 301 Vibrio parahaemolyticus RIMD 2210633 Escherichia coli O157:H7 str. Sakai Bordetella bronchiseptica 253 Enterobacter aerogenes KCTC 2190 Mycobacterium smegmatis str. MC2 155 Enterobacter cloacae subsp. cloacae ATCC 13047 Sinorhizobium meliloti 1021 Pseudomonas syringae pv. syringae B728a Xanthomonas campestris pv. campestris str. ATCC 33913 Aeromonas hydrophila subsp. hydrophila ATCC 7966 Bacteroides fragilis YCH46 Rhodobacter sphaeroides 2.4.1 Sinorhizobium fredii NGR234 Bacillus thuringiensis serovar konkukian str. 97-27 Bacillus cereus ATCC 14579 Bacillus subtilis subsp. subtilis str. 168 Bordetella parapertussis Bpp5 Escherichia coli UMN026 Escherichia coli O104:H4 str. 2011C-3493 Escherichia coli O83:H1 str. NRG 857C Escherichia coli str. K-12 substr. MG1655 Klebsiella pneumoniae subsp. pneumoniae HS11286
29
action count
action approx
action find_reverse_tuple_counts
relation found in taxon
type infraspecific name
type nucleic acid sequence
action count
action filter_type
action find
entity Klebsiella pneumoniae subsp. pneumoniae HS11286
relation found in taxon
type infraspecific name
[{'concept': 'nucleic acid sequence'}, 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ( COUNT ( ?k ) AS ?w ) WHERE { { SELECT DISTINCT ?k ( COUNT ( ?l ) AS ?u ) WHERE { ?l property:found_in_taxon ?k . ?k rdf:type ontology:infraspecific_name . ?l rdf:type ontology:nucleic_acid_sequence } GROUP BY ?k } . FILTER ( ?u = ?z ) . { SELECT DISTINCT ( COUNT ( ?s ) AS ?z ) WHERE { resource:Klebsiella_pneumoniae_subsp._pneumoniae_HS11286 property:found_in_taxon ?s . ?s rdf:type ontology:infraspecific_name } } }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q24093292
P702
Q863908
USER
Which gene encodes sulfate adenylyltransferase subunit 2    Psyr_4128 ?
(Q24093292,P702,c(Q863908))
action filter_type
action find
entity Q24093292
relation P702
type Q863908
['Q24093292', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?r WHERE { resource:Q24093292 property:P702 ?r . ?r rdf:type ontology:Q863908 }
sulfate adenylyltransferase subunit 2    Psyr_4128
action filter_type
action find
entity sulfate adenylyltransferase subunit 2    Psyr_4128
relation encoded by
type nucleic acid sequence
['sulfate adenylyltransferase subunit 2    Psyr_4128', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?r WHERE { resource:sulfate_adenylyltransferase_subunit_2____Psyr_4128 property:encoded_by ?r . ?r rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23146474
SYSTEM
sulfate adenylyltransferase subunit 2    Psyr_4128
Q23146474
(Q24093292,P702,c(Q863908))
action filter_type
action find
entity Q24093292
relation P702
type Q863908
Sulfate adenylyltransferase subunit 2 Psyr 4128 encodes sulfate adenylyltransferase subunit 2 Psyr_4128
['Q24093292', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?r WHERE { resource:Q24093292 property:P702 ?r . ?r rdf:type ontology:Q863908 }
sulfate adenylyltransferase subunit 2    Psyr_4128
Sulfate adenylyltransferase subunit 2 Psyr 4128 encodes sulfate adenylyltransferase subunit 2 Psyr_4128
sulfate adenylyltransferase subunit 2    Psyr_4128
action filter_type
action find
entity sulfate adenylyltransferase subunit 2    Psyr_4128
relation encoded by
type nucleic acid sequence
['sulfate adenylyltransferase subunit 2    Psyr_4128', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?r WHERE { resource:sulfate_adenylyltransferase_subunit_2____Psyr_4128 property:encoded_by ?r . ?r rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q23146474 Q22293315
P702
Q181394
USER
Is hypothetical protein    TDE1820 encoded by that nucleic acid sequence ?
(Q22293315,P702,Q23146474)
action is_in
entity Q22293315
action find
entity Q23146474
relation P702
['Q22293315', 'P702', 'Q23146474']
ASK WHERE { resource:Q23146474 property:P702 resource:Q22293315 }
sulfate adenylyltransferase subunit 2    Psyr_4128 hypothetical protein    TDE1820
action is_in
entity hypothetical protein    TDE1820
action find
entity sulfate adenylyltransferase subunit 2    Psyr_4128
relation encoded by
['hypothetical protein    TDE1820', 'encoded by', 'sulfate adenylyltransferase subunit 2    Psyr_4128']
ASK WHERE { resource:sulfate_adenylyltransferase_subunit_2____Psyr_4128 property:encoded_by resource:hypothetical_protein____TDE1820 }
[]
nutrient
SYSTEM
NO
(Q22293315,P702,Q23146474)
action is_in
entity Q22293315
action find
entity Q23146474
relation P702
[ANSWER]
['Q22293315', 'P702', 'Q23146474']
ASK WHERE { resource:Q23146474 property:P702 resource:Q22293315 }
No
action is_in
entity hypothetical protein    TDE1820
action find
entity sulfate adenylyltransferase subunit 2    Psyr_4128
relation encoded by
['hypothetical protein    TDE1820', 'encoded by', 'sulfate adenylyltransferase subunit 2    Psyr_4128']
ASK WHERE { resource:sulfate_adenylyltransferase_subunit_2____Psyr_4128 property:encoded_by resource:hypothetical_protein____TDE1820 }
[]