Simple Question (Direct)
Simple Question
Q23537679
P682
Q1057
USER
What is the metabolic process that undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase    Moth_0843 is involved in ?
(Q23537679,P682,c(Q1057))
action filter_type
action find
entity Q23537679
relation P682
type Q1057
['Q23537679', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?x WHERE { resource:Q23537679 property:P682 ?x . ?x rdf:type ontology:Q1057 }
undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase    Moth_0843
action filter_type
action find
entity undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase    Moth_0843
relation biological process
type metabolic process
['undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase    Moth_0843', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?x WHERE { resource:undecaprenyldiphospho-muramoylpentapeptide_beta-N-_acetylglucosaminyltransferase____Moth_0843 property:biological_process ?x . ?x rdf:type ontology:metabolic_process }
[]
metabolic process
Q14762260
SYSTEM
carbohydrate metabolic process
Q14762260
(Q23537679,P682,c(Q1057))
action filter_type
action find
entity Q23537679
relation P682
type Q1057
The metabolic process that undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase Moth_0843 is involved in is [ANSWER]
['Q23537679', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?x WHERE { resource:Q23537679 property:P682 ?x . ?x rdf:type ontology:Q1057 }
carbohydrate metabolic process
The metabolic process that undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase Moth_0843 is involved in is carbohydrate metabolic process
carbohydrate metabolic process
action filter_type
action find
entity undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase    Moth_0843
relation biological process
type metabolic process
['undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase    Moth_0843', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?x WHERE { resource:undecaprenyldiphospho-muramoylpentapeptide_beta-N-_acetylglucosaminyltransferase____Moth_0843 property:biological_process ?x . ?x rdf:type ontology:metabolic_process }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q14762260
P361
Q2996394
USER
What is that metabolic process a component of ?
(Q14762260,P361,c(Q2996394))
action filter_type
action find
entity Q14762260
relation P361
type Q2996394
['Q14762260', 'P361', {'concept': 'Q2996394'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:Q2996394 . resource:Q14762260 property:P361 ?j }
carbohydrate metabolic process
action filter_type
action find
entity carbohydrate metabolic process
relation part of
type biological process
['carbohydrate metabolic process', 'part of', {'concept': 'biological process'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:biological_process . resource:carbohydrate_metabolic_process property:part_of ?j }
[]
biological process
Q21106266
SYSTEM
carbohydrate utilization
Q21106266
(Q14762260,P361,c(Q2996394))
action filter_type
action find
entity Q14762260
relation P361
type Q2996394
That metabolic process a component of is [ANSWER]
['Q14762260', 'P361', {'concept': 'Q2996394'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:Q2996394 . resource:Q14762260 property:P361 ?j }
carbohydrate utilization
That metabolic process a component of is carbohydrate utilization
carbohydrate utilization
action filter_type
action find
entity carbohydrate metabolic process
relation part of
type biological process
['carbohydrate metabolic process', 'part of', {'concept': 'biological process'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:biological_process . resource:carbohydrate_metabolic_process property:part_of ?j }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Single entity type|Indirect
P682
Q2996394 Q181394
USER
How many biological processes are a biological processes that less number of nutrients are involved in than that biological process ?
(c(Q181394),P682,c(Q2996394))
action count
action less
action find_reverse_tuple_counts
relation P682
type Q2996394
type Q181394
action count
action filter_type
action find_reverse
entity Q21106266
relation P682
type Q181394
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ( COUNT ( ?v ) AS ?a ) WHERE { { SELECT DISTINCT ?v ( COUNT ( ?i ) AS ?x ) WHERE { ?i property:P682 ?v . ?v rdf:type ontology:Q2996394 . ?i rdf:type ontology:Q181394 } GROUP BY ?v } . { SELECT DISTINCT ( COUNT ( ?z ) AS ?s ) WHERE { ?z property:P682 resource:Q21106266 . ?z rdf:type ontology:Q181394 } } . FILTER ( ?x < ?s ) }
action count
action less
action find_reverse_tuple_counts
relation biological process
type biological process
type nutrient
action count
action filter_type
action find_reverse
entity carbohydrate utilization
relation biological process
type nutrient
[{'concept': 'nutrient'}, 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ( COUNT ( ?v ) AS ?a ) WHERE { { SELECT DISTINCT ?v ( COUNT ( ?i ) AS ?x ) WHERE { ?i property:biological_process ?v . ?v rdf:type ontology:biological_process . ?i rdf:type ontology:nutrient } GROUP BY ?v } . { SELECT DISTINCT ( COUNT ( ?z ) AS ?s ) WHERE { ?z property:biological_process resource:carbohydrate_utilization . ?z rdf:type ontology:nutrient } } . FILTER ( ?x < ?s ) }
[]
biological process nutrient
SYSTEM
51
Q22294591 Q21172195 Q21107328 Q22295734 Q22271492 Q22271494 Q14864899 Q21122953 Q21104659 Q22294349 Q15325345 Q22269626 Q24459941 Q21438150 Q21114926 Q21136671 Q22253821 Q21109007 Q22279989 Q21127160 Q14865397 Q14859996 Q14865659 Q21171796 Q21120908 Q22271501 Q22281166 Q14908045 Q21105147 Q21123910 Q22298156 Q22271697 Q21119405 Q21130764 Q21418091 Q21124921 Q14904764 Q22250139 Q14863667 Q21111494 Q17304930 Q22284328 Q21108938 Q14912956 Q22279704 Q21102309 Q22269699 Q21115753 Q24459846 Q22274350 Q21104842
(c(Q181394),P682,c(Q2996394))
action count
action less
action find_reverse_tuple_counts
relation P682
type Q2996394
type Q181394
action count
action filter_type
action find_reverse
entity Q21106266
relation P682
type Q181394
[ANSWER]
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ( COUNT ( ?v ) AS ?a ) WHERE { { SELECT DISTINCT ?v ( COUNT ( ?i ) AS ?x ) WHERE { ?i property:P682 ?v . ?v rdf:type ontology:Q2996394 . ?i rdf:type ontology:Q181394 } GROUP BY ?v } . { SELECT DISTINCT ( COUNT ( ?z ) AS ?s ) WHERE { ?z property:P682 resource:Q21106266 . ?z rdf:type ontology:Q181394 } } . FILTER ( ?x < ?s ) }
mitotic cell cycle arrest in response to pheromone positive regulation of growth factor dependent skeletal muscle satellite cell proliferation development involved in symbiotic interaction leukocyte activation detoxification of zinc ion detoxification of arsenic-containing substance acrosome matrix dispersal male pronucleus assembly detoxification of nitrogen compound dormancy process pronuclear fusion single-organism developmental process manchette assembly protein activation cascade complement-dependent cytotoxicity female pronucleus assembly regulation of transcription involved in meiotic cell cycle developmental induction gene conversion at mating-type locus, DNA double-strand break processing fertilization, exchange of chromosomal proteins T cell selection mesenchymal smoothened signaling pathway involved in prostate gland development tolerance induction nitric oxide storage cellular localization multi-organism cellular process gene conversion at mating-type locus, DNA double-strand break formation menstrual cycle phase single organism reproductive process leukocyte mediated cytotoxicity maintenance of cell number activation of immune response single-organism behavior ultradian rhythm antibody-dependent cellular cytotoxicity P granule organization primary ovarian follicle growth meiotic cell cycle process rhythmic behavior activation of meiosis involved in egg activation cell cycle process peptide mating pheromone maturation involved in conjugation with cellular fusion preantral ovarian follicle growth ovarian cumulus expansion gene conversion at mating-type locus, DNA repair synthesis response to abiotic stimulus growth involved in symbiotic interaction behavioral response to nutrient intermicrovillar adhesion phenotypic switching chromosome localization to nuclear envelope involved in homologous chromosome segregation
51
action count
action less
action find_reverse_tuple_counts
relation biological process
type biological process
type nutrient
action count
action filter_type
action find_reverse
entity carbohydrate utilization
relation biological process
type nutrient
[{'concept': 'nutrient'}, 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ( COUNT ( ?v ) AS ?a ) WHERE { { SELECT DISTINCT ?v ( COUNT ( ?i ) AS ?x ) WHERE { ?i property:biological_process ?v . ?v rdf:type ontology:biological_process . ?i rdf:type ontology:nutrient } GROUP BY ?v } . { SELECT DISTINCT ( COUNT ( ?z ) AS ?s ) WHERE { ?z property:biological_process resource:carbohydrate_utilization . ?z rdf:type ontology:nutrient } } . FILTER ( ?x < ?s ) }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q27755894 Q23537679
P681
Q5058355
USER
Which cellular components are components of undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase    Moth_0843 or ABC transporter integral membrane protein BldKA    SCO5112 ?
OR((Q23537679,P681,c(Q5058355)), (Q27755894,P681,c(Q5058355)))
action filter_type
action union
action find
entity Q23537679
relation P681
action find
entity Q27755894
relation P681
type Q5058355
{'OR': [['Q23537679', 'P681', {'concept': 'Q5058355'}], ['Q27755894', 'P681', {'concept': 'Q5058355'}]]}
SELECT DISTINCT ?z WHERE { { { resource:Q23537679 property:P681 ?z } UNION { resource:Q27755894 property:P681 ?z } } . ?z rdf:type ontology:Q5058355 }
ABC transporter integral membrane protein BldKA    SCO5112 undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase    Moth_0843
action filter_type
action union
action find
entity undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase    Moth_0843
relation cell component
action find
entity ABC transporter integral membrane protein BldKA    SCO5112
relation cell component
type cellular component
{'OR': [['undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase    Moth_0843', 'cell component', {'concept': 'cellular component'}], ['ABC transporter integral membrane protein BldKA    SCO5112', 'cell component', {'concept': 'cellular component'}]]}
SELECT DISTINCT ?z WHERE { { { resource:undecaprenyldiphospho-muramoylpentapeptide_beta-N-_acetylglucosaminyltransferase____Moth_0843 property:cell_component ?z } UNION { resource:ABC_transporter_integral_membrane_protein_BldKA____SCO5112 property:cell_component ?z } } . ?z rdf:type ontology:cellular_component }
[]
cellular component
Q29548
SYSTEM
plasma membrane
Q29548
OR((Q23537679,P681,c(Q5058355)), (Q27755894,P681,c(Q5058355)))
action filter_type
action union
action find
entity Q23537679
relation P681
action find
entity Q27755894
relation P681
type Q5058355
The [ANSWER] is components of undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase Moth_0843 or ABC transporter integral membrane protein BldKA SCO5112
{'OR': [['Q23537679', 'P681', {'concept': 'Q5058355'}], ['Q27755894', 'P681', {'concept': 'Q5058355'}]]}
SELECT DISTINCT ?z WHERE { { { resource:Q23537679 property:P681 ?z } UNION { resource:Q27755894 property:P681 ?z } } . ?z rdf:type ontology:Q5058355 }
plasma membrane
The plasma membrane is components of undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase Moth_0843 or ABC transporter integral membrane protein BldKA SCO5112
plasma membrane
action filter_type
action union
action find
entity undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase    Moth_0843
relation cell component
action find
entity ABC transporter integral membrane protein BldKA    SCO5112
relation cell component
type cellular component
{'OR': [['undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase    Moth_0843', 'cell component', {'concept': 'cellular component'}], ['ABC transporter integral membrane protein BldKA    SCO5112', 'cell component', {'concept': 'cellular component'}]]}
SELECT DISTINCT ?z WHERE { { { resource:undecaprenyldiphospho-muramoylpentapeptide_beta-N-_acetylglucosaminyltransferase____Moth_0843 property:cell_component ?z } UNION { resource:ABC_transporter_integral_membrane_protein_BldKA____SCO5112 property:cell_component ?z } } . ?z rdf:type ontology:cellular_component }
[]
Quantitative Reasoning (All)
Quantitative|Min/Max|Mult. entity type
P129
Q181394 Q79529 Q8386
USER
Which nutrients do max number of chemical substances or drugs communicate with ?
(c(Q79529)|c(Q8386),P129,c(Q181394))
action argmax
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
[[{'concept': 'Q79529'}, {'concept': 'Q8386'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?w WHERE { { SELECT DISTINCT ( MAX ( ?x ) AS ?v ) { SELECT DISTINCT ?n ( COUNT ( ?p ) AS ?x ) WHERE { { ?p property:P129 ?n . ?n rdf:type ontology:Q181394 . ?p rdf:type ontology:Q79529 } UNION { ?p property:P129 ?n . ?n rdf:type ontology:Q181394 . ?p rdf:type ontology:Q8386 } } GROUP BY ?n } } . { SELECT DISTINCT ?w ( COUNT ( ?l ) AS ?a ) WHERE { { ?l property:P129 ?w . ?l rdf:type ontology:Q79529 . ?w rdf:type ontology:Q181394 } UNION { ?l rdf:type ontology:Q8386 . ?w rdf:type ontology:Q181394 . ?l property:P129 ?w } } GROUP BY ?w } . FILTER ( ?a = ?v ) }
action argmax
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
[[{'concept': 'chemical substance'}, {'concept': 'drug'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?w WHERE { { SELECT DISTINCT ( MAX ( ?x ) AS ?v ) { SELECT DISTINCT ?n ( COUNT ( ?p ) AS ?x ) WHERE { { ?p property:physically_interacts_with ?n . ?n rdf:type ontology:nutrient . ?p rdf:type ontology:chemical_substance } UNION { ?p property:physically_interacts_with ?n . ?n rdf:type ontology:nutrient . ?p rdf:type ontology:drug } } GROUP BY ?n } } . { SELECT DISTINCT ?w ( COUNT ( ?l ) AS ?a ) WHERE { { ?l property:physically_interacts_with ?w . ?l rdf:type ontology:chemical_substance . ?w rdf:type ontology:nutrient } UNION { ?l rdf:type ontology:drug . ?w rdf:type ontology:nutrient . ?l property:physically_interacts_with ?w } } GROUP BY ?w } . FILTER ( ?a = ?v ) }
[]
nutrient chemical substance drug
Q1949517
SYSTEM
5-hydroxytryptamine receptor 2A
Q1949517
(c(Q79529)|c(Q8386),P129,c(Q181394))
action argmax
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
[ANSWER] max number of chemical substances or drugs communicate with
[[{'concept': 'Q79529'}, {'concept': 'Q8386'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?w WHERE { { SELECT DISTINCT ( MAX ( ?x ) AS ?v ) { SELECT DISTINCT ?n ( COUNT ( ?p ) AS ?x ) WHERE { { ?p property:P129 ?n . ?n rdf:type ontology:Q181394 . ?p rdf:type ontology:Q79529 } UNION { ?p property:P129 ?n . ?n rdf:type ontology:Q181394 . ?p rdf:type ontology:Q8386 } } GROUP BY ?n } } . { SELECT DISTINCT ?w ( COUNT ( ?l ) AS ?a ) WHERE { { ?l property:P129 ?w . ?l rdf:type ontology:Q79529 . ?w rdf:type ontology:Q181394 } UNION { ?l rdf:type ontology:Q8386 . ?w rdf:type ontology:Q181394 . ?l property:P129 ?w } } GROUP BY ?w } . FILTER ( ?a = ?v ) }
5-hydroxytryptamine receptor 2A
5-hydroxytryptamine receptor 2A max number of chemical substances or drugs communicate with
5-hydroxytryptamine receptor 2A
action argmax
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
[[{'concept': 'chemical substance'}, {'concept': 'drug'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?w WHERE { { SELECT DISTINCT ( MAX ( ?x ) AS ?v ) { SELECT DISTINCT ?n ( COUNT ( ?p ) AS ?x ) WHERE { { ?p property:physically_interacts_with ?n . ?n rdf:type ontology:nutrient . ?p rdf:type ontology:chemical_substance } UNION { ?p property:physically_interacts_with ?n . ?n rdf:type ontology:nutrient . ?p rdf:type ontology:drug } } GROUP BY ?n } } . { SELECT DISTINCT ?w ( COUNT ( ?l ) AS ?a ) WHERE { { ?l property:physically_interacts_with ?w . ?l rdf:type ontology:chemical_substance . ?w rdf:type ontology:nutrient } UNION { ?l rdf:type ontology:drug . ?w rdf:type ontology:nutrient . ?l property:physically_interacts_with ?w } } GROUP BY ?w } . FILTER ( ?a = ?v ) }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q1949517
P702
Q863908
USER
What is the gene that encodes that nutrient ?
(Q1949517,P702,c(Q863908))
action filter_type
action find
entity Q1949517
relation P702
type Q863908
['Q1949517', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?l WHERE { ?l rdf:type ontology:Q863908 . resource:Q1949517 property:P702 ?l }
5-hydroxytryptamine receptor 2A
action filter_type
action find
entity 5-hydroxytryptamine receptor 2A
relation encoded by
type nucleic acid sequence
['5-hydroxytryptamine receptor 2A', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?l WHERE { ?l rdf:type ontology:nucleic_acid_sequence . resource:5-hydroxytryptamine_receptor_2A property:encoded_by ?l }
[]
nucleic acid sequence
Q14891424
SYSTEM
HTR2A
Q14891424
(Q1949517,P702,c(Q863908))
action filter_type
action find
entity Q1949517
relation P702
type Q863908
The gene that encodes that nutrient is a [ANSWER]
['Q1949517', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?l WHERE { ?l rdf:type ontology:Q863908 . resource:Q1949517 property:P702 ?l }
HTR2A
The gene that encodes that nutrient is a HTR2A
HTR2A
action filter_type
action find
entity 5-hydroxytryptamine receptor 2A
relation encoded by
type nucleic acid sequence
['5-hydroxytryptamine receptor 2A', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?l WHERE { ?l rdf:type ontology:nucleic_acid_sequence . resource:5-hydroxytryptamine_receptor_2A property:encoded_by ?l }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q14891424
P684
Q863908
USER
What is the name of the species that has that one as its orthologous gene ?
(c(Q863908),P684,Q14891424)
action filter_type
action find
entity Q14891424
relation P684
type Q863908
[{'concept': 'Q863908'}, 'P684', 'Q14891424']
SELECT DISTINCT ?h WHERE { resource:Q14891424 property:P684 ?h . ?h rdf:type ontology:Q863908 }
HTR2A
action filter_type
action find
entity HTR2A
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'HTR2A']
SELECT DISTINCT ?h WHERE { resource:HTR2A property:ortholog ?h . ?h rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q14891430
SYSTEM
Htr2a
Q14891430
(c(Q863908),P684,Q14891424)
action filter_type
action find
entity Q14891424
relation P684
type Q863908
The name of the species that has that one as its orthologous gene is the [ANSWER]
[{'concept': 'Q863908'}, 'P684', 'Q14891424']
SELECT DISTINCT ?h WHERE { resource:Q14891424 property:P684 ?h . ?h rdf:type ontology:Q863908 }
Htr2a
The name of the species that has that one as its orthologous gene is the Htr2a
Htr2a
action filter_type
action find
entity HTR2A
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'HTR2A']
SELECT DISTINCT ?h WHERE { resource:HTR2A property:ortholog ?h . ?h rdf:type ontology:nucleic_acid_sequence }
[]