Simple Question (Direct)
Simple Question
Q27748011
P703
Q631147
USER
Which infraspecific name is molecular chaperone GroEL    MSMEG_1583 found in ?
(Q27748011,P703,c(Q631147))
action filter_type
action find
entity Q27748011
relation P703
type Q631147
['Q27748011', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?q WHERE { resource:Q27748011 property:P703 ?q . ?q rdf:type ontology:Q631147 }
molecular chaperone GroEL    MSMEG_1583
action filter_type
action find
entity molecular chaperone GroEL    MSMEG_1583
relation found in taxon
type infraspecific name
['molecular chaperone GroEL    MSMEG_1583', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?q WHERE { resource:molecular_chaperone_GroEL____MSMEG_1583 property:found_in_taxon ?q . ?q rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102986
SYSTEM
Mycobacterium smegmatis str. MC2 155
Q21102986
(Q27748011,P703,c(Q631147))
action filter_type
action find
entity Q27748011
relation P703
type Q631147
Molecular [ANSWER] found in chaperone
['Q27748011', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?q WHERE { resource:Q27748011 property:P703 ?q . ?q rdf:type ontology:Q631147 }
Mycobacterium smegmatis str. MC2 155
Molecular Mycobacterium smegmatis str. MC2 155 found in chaperone
Mycobacterium smegmatis str. MC2 155
action filter_type
action find
entity molecular chaperone GroEL    MSMEG_1583
relation found in taxon
type infraspecific name
['molecular chaperone GroEL    MSMEG_1583', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?q WHERE { resource:molecular_chaperone_GroEL____MSMEG_1583 property:found_in_taxon ?q . ?q rdf:type ontology:infraspecific_name }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q27748011
P702
Q863908
USER
What encodes molecular chaperone GroEL    MSMEG_1583 ?
(Q27748011,P702,c(Q863908))
action filter_type
action find
entity Q27748011
relation P702
type Q863908
['Q27748011', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?j WHERE { resource:Q27748011 property:P702 ?j . ?j rdf:type ontology:Q863908 }
molecular chaperone GroEL    MSMEG_1583
action filter_type
action find
entity molecular chaperone GroEL    MSMEG_1583
relation encoded by
type nucleic acid sequence
['molecular chaperone GroEL    MSMEG_1583', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?j WHERE { resource:molecular_chaperone_GroEL____MSMEG_1583 property:encoded_by ?j . ?j rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23277073
SYSTEM
molecular chaperone GroEL    MSMEG_1583
Q23277073
(Q27748011,P702,c(Q863908))
action filter_type
action find
entity Q27748011
relation P702
type Q863908
Molecular chaperone GroEL MSMEG 1583 encodes molecular chaperone GroEL MSMEG_1583
['Q27748011', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?j WHERE { resource:Q27748011 property:P702 ?j . ?j rdf:type ontology:Q863908 }
molecular chaperone GroEL    MSMEG_1583
Molecular chaperone GroEL MSMEG 1583 encodes molecular chaperone GroEL MSMEG_1583
molecular chaperone GroEL    MSMEG_1583
action filter_type
action find
entity molecular chaperone GroEL    MSMEG_1583
relation encoded by
type nucleic acid sequence
['molecular chaperone GroEL    MSMEG_1583', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?j WHERE { resource:molecular_chaperone_GroEL____MSMEG_1583 property:encoded_by ?j . ?j rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q23277073 Q27748011
P702
Q181394
USER
Does that nucleic acid sequence encode molecular chaperone GroEL    MSMEG_1583 ?
(Q27748011,P702,Q23277073)
action is_in
entity Q23277073
action find
entity Q27748011
relation P702
['Q27748011', 'P702', 'Q23277073']
ASK WHERE { resource:Q27748011 property:P702 resource:Q23277073 }
molecular chaperone GroEL    MSMEG_1583 molecular chaperone GroEL    MSMEG_1583
action is_in
entity molecular chaperone GroEL    MSMEG_1583
action find
entity molecular chaperone GroEL    MSMEG_1583
relation encoded by
['molecular chaperone GroEL    MSMEG_1583', 'encoded by', 'molecular chaperone GroEL    MSMEG_1583']
ASK WHERE { resource:molecular_chaperone_GroEL____MSMEG_1583 property:encoded_by resource:molecular_chaperone_GroEL____MSMEG_1583 }
[]
nutrient
SYSTEM
YES
(Q27748011,P702,Q23277073)
action is_in
entity Q23277073
action find
entity Q27748011
relation P702
[ANSWER]
['Q27748011', 'P702', 'Q23277073']
ASK WHERE { resource:Q27748011 property:P702 resource:Q23277073 }
Yes
action is_in
entity molecular chaperone GroEL    MSMEG_1583
action find
entity molecular chaperone GroEL    MSMEG_1583
relation encoded by
['molecular chaperone GroEL    MSMEG_1583', 'encoded by', 'molecular chaperone GroEL    MSMEG_1583']
ASK WHERE { resource:molecular_chaperone_GroEL____MSMEG_1583 property:encoded_by resource:molecular_chaperone_GroEL____MSMEG_1583 }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q288705
Q181394
USER
And what about Alpha-galactosidase A?
(Q288705,P702,c(Q181394))
action filter_type
action find
entity Q288705
relation P702
type Q181394
['Q288705', 'P702', {'concept': 'Q181394'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:Q181394 . resource:Q288705 property:P702 ?m }
Alpha-galactosidase A
action filter_type
action find
entity Alpha-galactosidase A
relation encoded by
type nutrient
['Alpha-galactosidase A', 'encoded by', {'concept': 'nutrient'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:nutrient . resource:Alpha-galactosidase_A property:encoded_by ?m }
[]
nutrient
Q14886374
SYSTEM
GLA
Q14886374
(Q288705,P702,c(Q181394))
action filter_type
action find
entity Q288705
relation P702
type Q181394
[ANSWER]
['Q288705', 'P702', {'concept': 'Q181394'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:Q181394 . resource:Q288705 property:P702 ?m }
GLA
GLA
action filter_type
action find
entity Alpha-galactosidase A
relation encoded by
type nutrient
['Alpha-galactosidase A', 'encoded by', {'concept': 'nutrient'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:nutrient . resource:Alpha-galactosidase_A property:encoded_by ?m }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q14886374
P684
Q863908
USER
Which is the species that has that nutrient as its orthologous gene ?
(c(Q863908),P684,Q14886374)
action filter_type
action find
entity Q14886374
relation P684
type Q863908
[{'concept': 'Q863908'}, 'P684', 'Q14886374']
SELECT DISTINCT ?z WHERE { resource:Q14886374 property:P684 ?z . ?z rdf:type ontology:Q863908 }
GLA
action filter_type
action find
entity GLA
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'GLA']
SELECT DISTINCT ?z WHERE { resource:GLA property:ortholog ?z . ?z rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q14886382
SYSTEM
Gla
Q14886382
(c(Q863908),P684,Q14886374)
action filter_type
action find
entity Q14886374
relation P684
type Q863908
[ANSWER] is the species that has that nutrient as its orthologous gene
[{'concept': 'Q863908'}, 'P684', 'Q14886374']
SELECT DISTINCT ?z WHERE { resource:Q14886374 property:P684 ?z . ?z rdf:type ontology:Q863908 }
Gla
Gla is the species that has that nutrient as its orthologous gene
Gla
action filter_type
action find
entity GLA
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'GLA']
SELECT DISTINCT ?z WHERE { resource:GLA property:ortholog ?z . ?z rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|3 entities, 2 direct, 2(direct) are query entities, subject is indirect
Q14886382 Q21498879 Q6991007
P688
Q181394
USER
Does that nucleic acid sequence encodes Alpha-galactosidase A and Nematode Her-1 ?
(Q14886382,P688,Q21498879) (Q14886382,P688,Q6991007)
action is_in
entity Q14886382
action intersection
action find_reverse
entity Q21498879
relation P688
action find_reverse
entity Q6991007
relation P688
['Q14886382', 'P688', 'Q21498879'] ['Q14886382', 'P688', 'Q6991007']
ASK WHERE { resource:Q14886382 property:P688 resource:Q21498879 . resource:Q14886382 property:P688 resource:Q6991007 }
Gla Alpha-galactosidase A Nematode Her-1
action is_in
entity Gla
action intersection
action find_reverse
entity Alpha-galactosidase A
relation encodes
action find_reverse
entity Nematode Her-1
relation encodes
['Gla', 'encodes', 'Alpha-galactosidase A'] ['Gla', 'encodes', 'Nematode Her-1']
ASK WHERE { resource:Gla property:encodes resource:Alpha-galactosidase_A . resource:Gla property:encodes resource:Nematode_Her-1 }
[]
nutrient
SYSTEM
YES and NO respectively
(Q14886382,P688,Q21498879) (Q14886382,P688,Q6991007)
action is_in
entity Q14886382
action intersection
action find_reverse
entity Q21498879
relation P688
action find_reverse
entity Q6991007
relation P688
[ANSWER]
['Q14886382', 'P688', 'Q21498879'] ['Q14886382', 'P688', 'Q6991007']
ASK WHERE { resource:Q14886382 property:P688 resource:Q21498879 . resource:Q14886382 property:P688 resource:Q6991007 }
YES and NO respectively
action is_in
entity Gla
action intersection
action find_reverse
entity Alpha-galactosidase A
relation encodes
action find_reverse
entity Nematode Her-1
relation encodes
['Gla', 'encodes', 'Alpha-galactosidase A'] ['Gla', 'encodes', 'Nematode Her-1']
ASK WHERE { resource:Gla property:encodes resource:Alpha-galactosidase_A . resource:Gla property:encodes resource:Nematode_Her-1 }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type
Q14886374
P702
Q181394
USER
How many nutrients are encoded by GLA ?
(c(Q181394),P702,Q14886374)
action count
action filter_type
action find_reverse
entity Q14886374
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q14886374']
SELECT DISTINCT ( COUNT ( ?t ) AS ?p ) WHERE { ?t property:P702 resource:Q14886374 . ?t rdf:type ontology:Q181394 }
GLA
action count
action filter_type
action find_reverse
entity GLA
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'GLA']
SELECT DISTINCT ( COUNT ( ?t ) AS ?p ) WHERE { ?t property:encoded_by resource:GLA . ?t rdf:type ontology:nutrient }
[]
nutrient
SYSTEM
1
Q288705
(c(Q181394),P702,Q14886374)
action count
action filter_type
action find_reverse
entity Q14886374
relation P702
type Q181394
[ANSWER]
[{'concept': 'Q181394'}, 'P702', 'Q14886374']
SELECT DISTINCT ( COUNT ( ?t ) AS ?p ) WHERE { ?t property:P702 resource:Q14886374 . ?t rdf:type ontology:Q181394 }
Alpha-galactosidase A
1
action count
action filter_type
action find_reverse
entity GLA
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'GLA']
SELECT DISTINCT ( COUNT ( ?t ) AS ?p ) WHERE { ?t property:encoded_by resource:GLA . ?t rdf:type ontology:nutrient }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type|Incomplete
Q23294602
P702
Q181394
USER
And how about hypothetical protein    SCO2265?
(c(Q181394),P702,Q23294602)
action count
action filter_type
action find_reverse
entity Q23294602
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q23294602']
SELECT DISTINCT ( COUNT ( ?l ) AS ?n ) WHERE { ?l rdf:type ontology:Q181394 . ?l property:P702 resource:Q23294602 }
hypothetical protein    SCO2265
action count
action filter_type
action find_reverse
entity hypothetical protein    SCO2265
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'hypothetical protein    SCO2265']
SELECT DISTINCT ( COUNT ( ?l ) AS ?n ) WHERE { ?l rdf:type ontology:nutrient . ?l property:encoded_by resource:hypothetical_protein____SCO2265 }
[]
nutrient
SYSTEM
1
Q27756724
(c(Q181394),P702,Q23294602)
action count
action filter_type
action find_reverse
entity Q23294602
relation P702
type Q181394
[ANSWER]
[{'concept': 'Q181394'}, 'P702', 'Q23294602']
SELECT DISTINCT ( COUNT ( ?l ) AS ?n ) WHERE { ?l rdf:type ontology:Q181394 . ?l property:P702 resource:Q23294602 }
hypothetical protein    SCO2265
1
action count
action filter_type
action find_reverse
entity hypothetical protein    SCO2265
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'hypothetical protein    SCO2265']
SELECT DISTINCT ( COUNT ( ?l ) AS ?n ) WHERE { ?l rdf:type ontology:nutrient . ?l property:encoded_by resource:hypothetical_protein____SCO2265 }
[]
Quantitative Reasoning (Count) (All)
Incomplete count-based ques
Q5529366
Q181394
USER
And what about serine/threonine-protein kinase GCN2 YDR283C?
(Q5529366,P702,c(Q181394))
action count
action filter_type
action find
entity Q5529366
relation P702
type Q181394
['Q5529366', 'P702', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?k ) AS ?z ) WHERE { ?k rdf:type ontology:Q181394 . resource:Q5529366 property:P702 ?k }
serine/threonine-protein kinase GCN2 YDR283C
action count
action filter_type
action find
entity serine/threonine-protein kinase GCN2 YDR283C
relation encoded by
type nutrient
['serine/threonine-protein kinase GCN2 YDR283C', 'encoded by', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?k ) AS ?z ) WHERE { ?k rdf:type ontology:nutrient . resource:serine/threonine-protein_kinase_GCN2_YDR283C property:encoded_by ?k }
[]
nutrient
SYSTEM
1
(Q5529366,P702,c(Q181394))
action count
action filter_type
action find
entity Q5529366
relation P702
type Q181394
[ANSWER]
['Q5529366', 'P702', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?k ) AS ?z ) WHERE { ?k rdf:type ontology:Q181394 . resource:Q5529366 property:P702 ?k }
1
action count
action filter_type
action find
entity serine/threonine-protein kinase GCN2 YDR283C
relation encoded by
type nutrient
['serine/threonine-protein kinase GCN2 YDR283C', 'encoded by', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?k ) AS ?z ) WHERE { ?k rdf:type ontology:nutrient . resource:serine/threonine-protein_kinase_GCN2_YDR283C property:encoded_by ?k }
[]