Simple Question (Direct)
Simple Question
Q23458819
P680
Q44424
USER
What represents the molecular function of alpha-galactosidase    BT_3065 ?
(Q23458819,P680,c(Q44424))
action filter_type
action find
entity Q23458819
relation P680
type Q44424
['Q23458819', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?l WHERE { resource:Q23458819 property:P680 ?l . ?l rdf:type ontology:Q44424 }
alpha-galactosidase    BT_3065
action filter_type
action find
entity alpha-galactosidase    BT_3065
relation molecular function
type chemical bond
['alpha-galactosidase    BT_3065', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?l WHERE { resource:alpha-galactosidase____BT_3065 property:molecular_function ?l . ?l rdf:type ontology:chemical_bond }
[]
chemical bond
Q14633862
SYSTEM
calcium ion binding
Q14633862
(Q23458819,P680,c(Q44424))
action filter_type
action find
entity Q23458819
relation P680
type Q44424
The [ANSWER] represents the molecular function of alpha-galactosidase BT_3065
['Q23458819', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?l WHERE { resource:Q23458819 property:P680 ?l . ?l rdf:type ontology:Q44424 }
calcium ion binding
The calcium ion binding represents the molecular function of alpha-galactosidase BT_3065
calcium ion binding
action filter_type
action find
entity alpha-galactosidase    BT_3065
relation molecular function
type chemical bond
['alpha-galactosidase    BT_3065', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?l WHERE { resource:alpha-galactosidase____BT_3065 property:molecular_function ?l . ?l rdf:type ontology:chemical_bond }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23458819
P702
Q863908
USER
What is the gene that encodes that nutrient ?
(Q14633862,P702,c(Q863908))
action filter_type
action find
entity Q23458819
relation P702
type Q863908
['Q14633862', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?i WHERE { ?i rdf:type ontology:Q863908 . resource:Q23458819 property:P702 ?i }
alpha-galactosidase    BT_3065
action filter_type
action find
entity alpha-galactosidase    BT_3065
relation encoded by
type nucleic acid sequence
['calcium ion binding', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?i WHERE { ?i rdf:type ontology:nucleic_acid_sequence . resource:alpha-galactosidase____BT_3065 property:encoded_by ?i }
[]
nucleic acid sequence
Q23359491
SYSTEM
alpha-galactosidase    BT_3065
Q23359491
(Q14633862,P702,c(Q863908))
action filter_type
action find
entity Q23458819
relation P702
type Q863908
The gene that encodes that nutrient is the alpha-galactosidase BT 3065
['Q14633862', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?i WHERE { ?i rdf:type ontology:Q863908 . resource:Q23458819 property:P702 ?i }
alpha-galactosidase    BT_3065
The gene that encodes that nutrient is the alpha-galactosidase BT 3065
alpha-galactosidase    BT_3065
action filter_type
action find
entity alpha-galactosidase    BT_3065
relation encoded by
type nucleic acid sequence
['calcium ion binding', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?i WHERE { ?i rdf:type ontology:nucleic_acid_sequence . resource:alpha-galactosidase____BT_3065 property:encoded_by ?i }
[]
Verification (Boolean) (All)
Verification|3 entities, all direct, 2 are query entities
Q23359491 Q23458819 Q22134743
P688
Q181394
USER
Does alpha-galactosidase    BT_3065 encode alpha-galactosidase    BT_3065 and putative oxidoreductase    ECIAI39_1408 ?
(Q23359491,P688,Q23458819) (Q23359491,P688,Q22134743)
action is_in
entity Q23359491
action intersection
action find_reverse
entity Q23458819
relation P688
action find_reverse
entity Q22134743
relation P688
['Q23359491', 'P688', 'Q23458819'] ['Q23359491', 'P688', 'Q22134743']
ASK WHERE { resource:Q23359491 property:P688 resource:Q22134743 . resource:Q23359491 property:P688 resource:Q23458819 }
alpha-galactosidase    BT_3065 alpha-galactosidase    BT_3065 putative oxidoreductase    ECIAI39_1408
action is_in
entity alpha-galactosidase    BT_3065
action intersection
action find_reverse
entity alpha-galactosidase    BT_3065
relation encodes
action find_reverse
entity putative oxidoreductase    ECIAI39_1408
relation encodes
['alpha-galactosidase    BT_3065', 'encodes', 'alpha-galactosidase    BT_3065'] ['alpha-galactosidase    BT_3065', 'encodes', 'putative oxidoreductase    ECIAI39_1408']
ASK WHERE { resource:alpha-galactosidase____BT_3065 property:encodes resource:putative_oxidoreductase____ECIAI39_1408 . resource:alpha-galactosidase____BT_3065 property:encodes resource:alpha-galactosidase____BT_3065 }
[]
nutrient
SYSTEM
YES and NO respectively
(Q23359491,P688,Q23458819) (Q23359491,P688,Q22134743)
action is_in
entity Q23359491
action intersection
action find_reverse
entity Q23458819
relation P688
action find_reverse
entity Q22134743
relation P688
[ANSWER]
['Q23359491', 'P688', 'Q23458819'] ['Q23359491', 'P688', 'Q22134743']
ASK WHERE { resource:Q23359491 property:P688 resource:Q22134743 . resource:Q23359491 property:P688 resource:Q23458819 }
YES and NO respectively
action is_in
entity alpha-galactosidase    BT_3065
action intersection
action find_reverse
entity alpha-galactosidase    BT_3065
relation encodes
action find_reverse
entity putative oxidoreductase    ECIAI39_1408
relation encodes
['alpha-galactosidase    BT_3065', 'encodes', 'alpha-galactosidase    BT_3065'] ['alpha-galactosidase    BT_3065', 'encodes', 'putative oxidoreductase    ECIAI39_1408']
ASK WHERE { resource:alpha-galactosidase____BT_3065 property:encodes resource:putative_oxidoreductase____ECIAI39_1408 . resource:alpha-galactosidase____BT_3065 property:encodes resource:alpha-galactosidase____BT_3065 }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23359491
P703
Q16521
USER
Which taxon is that nucleic acid sequence found in ?
action filter_type
action find
entity Q23359491
relation P703
type Q16521
SELECT DISTINCT ?s WHERE { resource:Q23359491 property:P703 ?s . ?s rdf:type ontology:Q16521 }
alpha-galactosidase    BT_3065
action filter_type
action find
entity alpha-galactosidase    BT_3065
relation found in taxon
type taxon
SELECT DISTINCT ?s WHERE { resource:alpha-galactosidase____BT_3065 property:found_in_taxon ?s . ?s rdf:type ontology:taxon }
[]
taxon
Q21397543
SYSTEM
Bacteroides thetaiotaomicron VPI-5482
Q21397543
action filter_type
action find
entity Q23359491
relation P703
type Q16521
That nucleic acid sequence is found in [ANSWER]
SELECT DISTINCT ?s WHERE { resource:Q23359491 property:P703 ?s . ?s rdf:type ontology:Q16521 }
Bacteroides thetaiotaomicron VPI-5482
That nucleic acid sequence is found in Bacteroides thetaiotaomicron VPI-5482
Bacteroides thetaiotaomicron VPI-5482
action filter_type
action find
entity alpha-galactosidase    BT_3065
relation found in taxon
type taxon
SELECT DISTINCT ?s WHERE { resource:alpha-galactosidase____BT_3065 property:found_in_taxon ?s . ?s rdf:type ontology:taxon }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q24095317 Q22134743
P702
Q863908
USER
Which nucleic acid sequences are the gene that encodes putative oxidoreductase    ECIAI39_1408 or prolyl-tRNA synthetase    Psyr_1399 ?
OR((Q22134743,P702,c(Q863908)), (Q24095317,P702,c(Q863908)))
action filter_type
action union
action find
entity Q22134743
relation P702
action find
entity Q24095317
relation P702
type Q863908
{'OR': [['Q22134743', 'P702', {'concept': 'Q863908'}], ['Q24095317', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?q WHERE { ?q rdf:type ontology:Q863908 . { { resource:Q22134743 property:P702 ?q } UNION { resource:Q24095317 property:P702 ?q } } }
prolyl-tRNA synthetase    Psyr_1399 putative oxidoreductase    ECIAI39_1408
action filter_type
action union
action find
entity putative oxidoreductase    ECIAI39_1408
relation encoded by
action find
entity prolyl-tRNA synthetase    Psyr_1399
relation encoded by
type nucleic acid sequence
{'OR': [['putative oxidoreductase    ECIAI39_1408', 'encoded by', {'concept': 'nucleic acid sequence'}], ['prolyl-tRNA synthetase    Psyr_1399', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?q WHERE { ?q rdf:type ontology:nucleic_acid_sequence . { { resource:putative_oxidoreductase____ECIAI39_1408 property:encoded_by ?q } UNION { resource:prolyl-tRNA_synthetase____Psyr_1399 property:encoded_by ?q } } }
[]
nucleic acid sequence
Q23151541 Q22050842
SYSTEM
prolyl-tRNA synthetase    Psyr_1399, putative oxidoreductase    ECIAI39_1408
Q23151541 Q22050842
OR((Q22134743,P702,c(Q863908)), (Q24095317,P702,c(Q863908)))
action filter_type
action union
action find
entity Q22134743
relation P702
action find
entity Q24095317
relation P702
type Q863908
[ANSWERS]
{'OR': [['Q22134743', 'P702', {'concept': 'Q863908'}], ['Q24095317', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?q WHERE { ?q rdf:type ontology:Q863908 . { { resource:Q22134743 property:P702 ?q } UNION { resource:Q24095317 property:P702 ?q } } }
prolyl-tRNA synthetase    Psyr_1399 putative oxidoreductase    ECIAI39_1408
Prolyl-tRNA synthetase Psyr 1399 and putative oxidoreductase ECIAI39 1408 are the gene that encodes putative oxidoreductase ECIAI39_1408 or prolyl-tRNA synthetase Psyr_1399
prolyl-tRNA synthetase    Psyr_1399 putative oxidoreductase    ECIAI39_1408
action filter_type
action union
action find
entity putative oxidoreductase    ECIAI39_1408
relation encoded by
action find
entity prolyl-tRNA synthetase    Psyr_1399
relation encoded by
type nucleic acid sequence
{'OR': [['putative oxidoreductase    ECIAI39_1408', 'encoded by', {'concept': 'nucleic acid sequence'}], ['prolyl-tRNA synthetase    Psyr_1399', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?q WHERE { ?q rdf:type ontology:nucleic_acid_sequence . { { resource:putative_oxidoreductase____ECIAI39_1408 property:encoded_by ?q } UNION { resource:prolyl-tRNA_synthetase____Psyr_1399 property:encoded_by ?q } } }
[]
Simple Question (Direct)
Simple Question|Mult. Entity|Indirect
Q23151541 Q22050842
P688
Q181394
USER
Which nutrients are prolyl-tRNA synthetase    Psyr_1399 and putative oxidoreductase    ECIAI39_1408 an encoding of ?
(Q23151541,P688,c(Q181394)) (Q22050842,P688,c(Q181394))
action union
action filter_type
action find
entity Q23151541
relation P688
type Q181394
action filter_type
action find
entity Q22050842
relation P688
type Q181394
['Q23151541', 'P688', {'concept': 'Q181394'}] ['Q22050842', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?e WHERE { ?b property:P688 ?e . VALUES ( ?b ) { ( resource:Q23151541 ) ( resource:Q22050842 ) } }
prolyl-tRNA synthetase    Psyr_1399 putative oxidoreductase    ECIAI39_1408
action union
action filter_type
action find
entity prolyl-tRNA synthetase    Psyr_1399
relation encodes
type nutrient
action filter_type
action find
entity putative oxidoreductase    ECIAI39_1408
relation encodes
type nutrient
['prolyl-tRNA synthetase    Psyr_1399', 'encodes', {'concept': 'nutrient'}] ['putative oxidoreductase    ECIAI39_1408', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?e WHERE { ?b property:encodes ?e . VALUES ( ?b ) { ( resource:prolyl-tRNA_synthetase____Psyr_1399 ) ( resource:putative_oxidoreductase____ECIAI39_1408 ) } }
[]
nutrient
Q24095317 Q22134743
SYSTEM
prolyl-tRNA synthetase    Psyr_1399, putative oxidoreductase    ECIAI39_1408
Q24095317 Q22134743
(Q23151541,P688,c(Q181394)) (Q22050842,P688,c(Q181394))
action union
action filter_type
action find
entity Q23151541
relation P688
type Q181394
action filter_type
action find
entity Q22050842
relation P688
type Q181394
[ANSWERS]
['Q23151541', 'P688', {'concept': 'Q181394'}] ['Q22050842', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?e WHERE { ?b property:P688 ?e . VALUES ( ?b ) { ( resource:Q23151541 ) ( resource:Q22050842 ) } }
prolyl-tRNA synthetase    Psyr_1399 putative oxidoreductase    ECIAI39_1408
Prolyl-tRNA synthetase Psyr 1399 and putative oxidoreductase ECIAI39 1408 are prolyl-tRNA synthetase Psyr_1399 and putative oxidoreductase ECIAI39_1408 an encoding of
prolyl-tRNA synthetase    Psyr_1399 putative oxidoreductase    ECIAI39_1408
action union
action filter_type
action find
entity prolyl-tRNA synthetase    Psyr_1399
relation encodes
type nutrient
action filter_type
action find
entity putative oxidoreductase    ECIAI39_1408
relation encodes
type nutrient
['prolyl-tRNA synthetase    Psyr_1399', 'encodes', {'concept': 'nutrient'}] ['putative oxidoreductase    ECIAI39_1408', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?e WHERE { ?b property:encodes ?e . VALUES ( ?b ) { ( resource:prolyl-tRNA_synthetase____Psyr_1399 ) ( resource:putative_oxidoreductase____ECIAI39_1408 ) } }
[]
Simple Question (Direct)
Simple Question|Mult. Entity|Indirect
Q24095317 Q22134743
P702
Q863908
USER
Which nucleic acid sequences encode prolyl-tRNA synthetase    Psyr_1399 and putative oxidoreductase    ECIAI39_1408 ?
(Q24095317,P702,c(Q863908)) (Q22134743,P702,c(Q863908))
action union
action filter_type
action find
entity Q24095317
relation P702
type Q863908
action filter_type
action find
entity Q22134743
relation P702
type Q863908
['Q24095317', 'P702', {'concept': 'Q863908'}] ['Q22134743', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?y WHERE { VALUES ( ?o ) { ( resource:Q24095317 ) ( resource:Q22134743 ) } . ?o property:P702 ?y }
prolyl-tRNA synthetase    Psyr_1399 putative oxidoreductase    ECIAI39_1408
action union
action filter_type
action find
entity prolyl-tRNA synthetase    Psyr_1399
relation encoded by
type nucleic acid sequence
action filter_type
action find
entity putative oxidoreductase    ECIAI39_1408
relation encoded by
type nucleic acid sequence
['prolyl-tRNA synthetase    Psyr_1399', 'encoded by', {'concept': 'nucleic acid sequence'}] ['putative oxidoreductase    ECIAI39_1408', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?y WHERE { VALUES ( ?o ) { ( resource:prolyl-tRNA_synthetase____Psyr_1399 ) ( resource:putative_oxidoreductase____ECIAI39_1408 ) } . ?o property:encoded_by ?y }
[]
nucleic acid sequence
Q23151541 Q22050842
SYSTEM
prolyl-tRNA synthetase    Psyr_1399, putative oxidoreductase    ECIAI39_1408
Q23151541 Q22050842
(Q24095317,P702,c(Q863908)) (Q22134743,P702,c(Q863908))
action union
action filter_type
action find
entity Q24095317
relation P702
type Q863908
action filter_type
action find
entity Q22134743
relation P702
type Q863908
[ANSWERS]
['Q24095317', 'P702', {'concept': 'Q863908'}] ['Q22134743', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?y WHERE { VALUES ( ?o ) { ( resource:Q24095317 ) ( resource:Q22134743 ) } . ?o property:P702 ?y }
prolyl-tRNA synthetase    Psyr_1399 putative oxidoreductase    ECIAI39_1408
Prolyl-tRNA synthetase Psyr 1399 and putative oxidoreductase ECIAI39 1408 encode prolyl-tRNA synthetase Psyr_1399 and putative oxidoreductase ECIAI39_1408
prolyl-tRNA synthetase    Psyr_1399 putative oxidoreductase    ECIAI39_1408
action union
action filter_type
action find
entity prolyl-tRNA synthetase    Psyr_1399
relation encoded by
type nucleic acid sequence
action filter_type
action find
entity putative oxidoreductase    ECIAI39_1408
relation encoded by
type nucleic acid sequence
['prolyl-tRNA synthetase    Psyr_1399', 'encoded by', {'concept': 'nucleic acid sequence'}] ['putative oxidoreductase    ECIAI39_1408', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?y WHERE { VALUES ( ?o ) { ( resource:prolyl-tRNA_synthetase____Psyr_1399 ) ( resource:putative_oxidoreductase____ECIAI39_1408 ) } . ?o property:encoded_by ?y }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q22134743
P682
Q1057
USER
Which metabolic process is putative oxidoreductase    ECIAI39_1408 involved in ?
(Q22134743,P682,c(Q1057))
action filter_type
action find
entity Q22134743
relation P682
type Q1057
['Q22134743', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?m WHERE { resource:Q22134743 property:P682 ?m . ?m rdf:type ontology:Q1057 }
putative oxidoreductase    ECIAI39_1408
action filter_type
action find
entity putative oxidoreductase    ECIAI39_1408
relation biological process
type metabolic process
['putative oxidoreductase    ECIAI39_1408', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?m WHERE { resource:putative_oxidoreductase____ECIAI39_1408 property:biological_process ?m . ?m rdf:type ontology:metabolic_process }
[]
metabolic process
Q14349764
SYSTEM
oxidation-reduction process
Q14349764
(Q22134743,P682,c(Q1057))
action filter_type
action find
entity Q22134743
relation P682
type Q1057
The [ANSWER] is putative oxidoreductase ECIAI39_1408 involved in
['Q22134743', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?m WHERE { resource:Q22134743 property:P682 ?m . ?m rdf:type ontology:Q1057 }
oxidation-reduction process
The oxidation-reduction process is putative oxidoreductase ECIAI39_1408 involved in
oxidation-reduction process
action filter_type
action find
entity putative oxidoreductase    ECIAI39_1408
relation biological process
type metabolic process
['putative oxidoreductase    ECIAI39_1408', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?m WHERE { resource:putative_oxidoreductase____ECIAI39_1408 property:biological_process ?m . ?m rdf:type ontology:metabolic_process }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q14349764 Q22325195
P682
Q181394
USER
Is cna protein B-type domain-containing protein    HMPREF0421_20277 involved in that metabolic process ?
(Q22325195,P682,Q14349764)
action is_in
entity Q22325195
action find
entity Q14349764
relation P682
['Q22325195', 'P682', 'Q14349764']
ASK WHERE { resource:Q14349764 property:P682 resource:Q22325195 }
oxidation-reduction process cna protein B-type domain-containing protein    HMPREF0421_20277
action is_in
entity cna protein B-type domain-containing protein    HMPREF0421_20277
action find
entity oxidation-reduction process
relation biological process
['cna protein B-type domain-containing protein    HMPREF0421_20277', 'biological process', 'oxidation-reduction process']
ASK WHERE { resource:oxidation-reduction_process property:biological_process resource:cna_protein_B-type_domain-containing_protein____HMPREF0421_20277 }
[]
nutrient
SYSTEM
NO
(Q22325195,P682,Q14349764)
action is_in
entity Q22325195
action find
entity Q14349764
relation P682
[ANSWER]
['Q22325195', 'P682', 'Q14349764']
ASK WHERE { resource:Q14349764 property:P682 resource:Q22325195 }
No
action is_in
entity cna protein B-type domain-containing protein    HMPREF0421_20277
action find
entity oxidation-reduction process
relation biological process
['cna protein B-type domain-containing protein    HMPREF0421_20277', 'biological process', 'oxidation-reduction process']
ASK WHERE { resource:oxidation-reduction_process property:biological_process resource:cna_protein_B-type_domain-containing_protein____HMPREF0421_20277 }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23458819
P681
Q15989253
USER
What is a component of alpha-galactosidase    BT_3065 ?
(Q23458819,P681,c(Q15989253))
action filter_type
action find
entity Q23458819
relation P681
type Q15989253
['Q23458819', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?b WHERE { resource:Q23458819 property:P681 ?b . ?b rdf:type ontology:Q15989253 }
alpha-galactosidase    BT_3065
action filter_type
action find
entity alpha-galactosidase    BT_3065
relation cell component
type part
['alpha-galactosidase    BT_3065', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?b WHERE { resource:alpha-galactosidase____BT_3065 property:cell_component ?b . ?b rdf:type ontology:part }
[]
part
Q14349455
SYSTEM
membrane
Q14349455
(Q23458819,P681,c(Q15989253))
action filter_type
action find
entity Q23458819
relation P681
type Q15989253
A component of alpha- galactosidase BT_3065 is a [ANSWER]
['Q23458819', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?b WHERE { resource:Q23458819 property:P681 ?b . ?b rdf:type ontology:Q15989253 }
membrane
A component of alpha- galactosidase BT_3065 is a membrane
membrane
action filter_type
action find
entity alpha-galactosidase    BT_3065
relation cell component
type part
['alpha-galactosidase    BT_3065', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?b WHERE { resource:alpha-galactosidase____BT_3065 property:cell_component ?b . ?b rdf:type ontology:part }
[]