Simple Question (Direct)
Simple Question
Q23476737
P703
Q16521
USER
Which taxon is Nuclease subunit of the excinuclease complex    Pro_0954 found in ?
(Q23476737,P703,c(Q16521))
action filter_type
action find
entity Q23476737
relation P703
type Q16521
['Q23476737', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?e WHERE { resource:Q23476737 property:P703 ?e . ?e rdf:type ontology:Q16521 }
Nuclease subunit of the excinuclease complex    Pro_0954
action filter_type
action find
entity Nuclease subunit of the excinuclease complex    Pro_0954
relation found in taxon
type taxon
['Nuclease subunit of the excinuclease complex    Pro_0954', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?e WHERE { resource:Nuclease_subunit_of_the_excinuclease_complex____Pro_0954 property:found_in_taxon ?e . ?e rdf:type ontology:taxon }
[]
taxon
Q21384221
SYSTEM
Prochlorococcus marinus subsp. marinus str. CCMP1375
Q21384221
(Q23476737,P703,c(Q16521))
action filter_type
action find
entity Q23476737
relation P703
type Q16521
Nuclease subunit of the excinuclease complex Pro_0954 in is found in [ANSWER]
['Q23476737', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?e WHERE { resource:Q23476737 property:P703 ?e . ?e rdf:type ontology:Q16521 }
Prochlorococcus marinus subsp. marinus str. CCMP1375
Nuclease subunit of the excinuclease complex Pro_0954 in is found in Prochlorococcus marinus subsp. marinus str. CCMP1375
Prochlorococcus marinus subsp. marinus str. CCMP1375
action filter_type
action find
entity Nuclease subunit of the excinuclease complex    Pro_0954
relation found in taxon
type taxon
['Nuclease subunit of the excinuclease complex    Pro_0954', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?e WHERE { resource:Nuclease_subunit_of_the_excinuclease_complex____Pro_0954 property:found_in_taxon ?e . ?e rdf:type ontology:taxon }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23476737
P681
Q15989253
USER
Which is the cell component of that nutrient ?
(Q21384221,P681,c(Q15989253))
action filter_type
action find
entity Q23476737
relation P681
type Q15989253
['Q21384221', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?d WHERE { resource:Q23476737 property:P681 ?d . ?d rdf:type ontology:Q15989253 }
Nuclease subunit of the excinuclease complex    Pro_0954
action filter_type
action find
entity Nuclease subunit of the excinuclease complex    Pro_0954
relation cell component
type part
['Prochlorococcus marinus subsp. marinus str. CCMP1375', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?d WHERE { resource:Nuclease_subunit_of_the_excinuclease_complex____Pro_0954 property:cell_component ?d . ?d rdf:type ontology:part }
[]
part
Q79899
SYSTEM
cytoplasm
Q79899
(Q21384221,P681,c(Q15989253))
action filter_type
action find
entity Q23476737
relation P681
type Q15989253
[ANSWER] is the cell component of that nutrient
['Q21384221', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?d WHERE { resource:Q23476737 property:P681 ?d . ?d rdf:type ontology:Q15989253 }
cytoplasm
Cytoplasm is the cell component of that nutrient
cytoplasm
action filter_type
action find
entity Nuclease subunit of the excinuclease complex    Pro_0954
relation cell component
type part
['Prochlorococcus marinus subsp. marinus str. CCMP1375', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?d WHERE { resource:Nuclease_subunit_of_the_excinuclease_complex____Pro_0954 property:cell_component ?d . ?d rdf:type ontology:part }
[]
Logical Reasoning (All)
Logical|Intersection|Single_Relation|Incomplete
Q21127232 Q23476737
P681
Q15989253
USER
And also Histone-lysine N-methyltransferase SMYD3
AND((Q23476737,P681,c(Q15989253)), (Q21127232,P681,c(Q15989253)))
action filter_type
action intersection
action find
entity Q23476737
relation P681
action find
entity Q21127232
relation P681
type Q15989253
{'AND': [['Q23476737', 'P681', {'concept': 'Q15989253'}], ['Q21127232', 'P681', {'concept': 'Q15989253'}]]}
SELECT DISTINCT ?h WHERE { resource:Q23476737 property:P681 ?h . resource:Q21127232 property:P681 ?h . ?h rdf:type ontology:Q15989253 }
Histone-lysine N-methyltransferase SMYD3 Nuclease subunit of the excinuclease complex    Pro_0954
action filter_type
action intersection
action find
entity Nuclease subunit of the excinuclease complex    Pro_0954
relation cell component
action find
entity Histone-lysine N-methyltransferase SMYD3
relation cell component
type part
{'AND': [['Nuclease subunit of the excinuclease complex    Pro_0954', 'cell component', {'concept': 'part'}], ['Histone-lysine N-methyltransferase SMYD3', 'cell component', {'concept': 'part'}]]}
SELECT DISTINCT ?h WHERE { resource:Nuclease_subunit_of_the_excinuclease_complex____Pro_0954 property:cell_component ?h . resource:Histone-lysine_N-methyltransferase_SMYD3 property:cell_component ?h . ?h rdf:type ontology:part }
[]
part
Q79899
SYSTEM
cytoplasm
Q79899
AND((Q23476737,P681,c(Q15989253)), (Q21127232,P681,c(Q15989253)))
action filter_type
action intersection
action find
entity Q23476737
relation P681
action find
entity Q21127232
relation P681
type Q15989253
[ANSWER]
{'AND': [['Q23476737', 'P681', {'concept': 'Q15989253'}], ['Q21127232', 'P681', {'concept': 'Q15989253'}]]}
SELECT DISTINCT ?h WHERE { resource:Q23476737 property:P681 ?h . resource:Q21127232 property:P681 ?h . ?h rdf:type ontology:Q15989253 }
cytoplasm
cytoplasm
action filter_type
action intersection
action find
entity Nuclease subunit of the excinuclease complex    Pro_0954
relation cell component
action find
entity Histone-lysine N-methyltransferase SMYD3
relation cell component
type part
{'AND': [['Nuclease subunit of the excinuclease complex    Pro_0954', 'cell component', {'concept': 'part'}], ['Histone-lysine N-methyltransferase SMYD3', 'cell component', {'concept': 'part'}]]}
SELECT DISTINCT ?h WHERE { resource:Nuclease_subunit_of_the_excinuclease_complex____Pro_0954 property:cell_component ?h . resource:Histone-lysine_N-methyltransferase_SMYD3 property:cell_component ?h . ?h rdf:type ontology:part }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Mult. entity type|Indirect
P361
Q15989253 Q5058355 Q15989253
USER
How many parts are less number of cellular components and parts a part of than that part ?
(c(Q5058355)|c(Q15989253),P361,c(Q15989253))
action count
action less
action union
action find_reverse_tuple_counts
relation P361
type Q15989253
type Q5058355
action find_reverse_tuple_counts
relation P361
type Q15989253
type Q15989253
action count
action filter_multi_types
action find_reverse
entity Q79899
relation P361
type Q5058355
type Q15989253
[[{'concept': 'Q5058355'}, {'concept': 'Q15989253'}], 'P361', {'concept': 'Q15989253'}]
SELECT DISTINCT ( COUNT ( ?d ) AS ?m ) WHERE { { SELECT DISTINCT ( COUNT ( ?l ) AS ?u ) ?d WHERE { { ?l property:P361 ?d . ?d rdf:type ontology:Q15989253 . ?l rdf:type ontology:Q5058355 } UNION { ?l property:P361 ?d . ?d rdf:type ontology:Q15989253 . ?l rdf:type ontology:Q15989253 } } GROUP BY ?d } . { SELECT DISTINCT ( COUNT ( ?q ) AS ?v ) WHERE { ?q property:P361 resource:Q79899 . { { ?q rdf:type ontology:Q5058355 } UNION { ?q rdf:type ontology:Q15989253 } } } } . FILTER ( ?u < ?v ) }
action count
action less
action union
action find_reverse_tuple_counts
relation part of
type part
type cellular component
action find_reverse_tuple_counts
relation part of
type part
type part
action count
action filter_multi_types
action find_reverse
entity cytoplasm
relation part of
type cellular component
type part
[[{'concept': 'cellular component'}, {'concept': 'part'}], 'part of', {'concept': 'part'}]
SELECT DISTINCT ( COUNT ( ?d ) AS ?m ) WHERE { { SELECT DISTINCT ( COUNT ( ?l ) AS ?u ) ?d WHERE { { ?l property:part_of ?d . ?d rdf:type ontology:part . ?l rdf:type ontology:cellular_component } UNION { ?l property:part_of ?d . ?d rdf:type ontology:part . ?l rdf:type ontology:part } } GROUP BY ?d } . { SELECT DISTINCT ( COUNT ( ?q ) AS ?v ) WHERE { ?q property:part_of resource:cytoplasm . { { ?q rdf:type ontology:cellular_component } UNION { ?q rdf:type ontology:part } } } } . FILTER ( ?u < ?v ) }
[]
part cellular component part
SYSTEM
0
(c(Q5058355)|c(Q15989253),P361,c(Q15989253))
action count
action less
action union
action find_reverse_tuple_counts
relation P361
type Q15989253
type Q5058355
action find_reverse_tuple_counts
relation P361
type Q15989253
type Q15989253
action count
action filter_multi_types
action find_reverse
entity Q79899
relation P361
type Q5058355
type Q15989253
[ANSWER]
[[{'concept': 'Q5058355'}, {'concept': 'Q15989253'}], 'P361', {'concept': 'Q15989253'}]
SELECT DISTINCT ( COUNT ( ?d ) AS ?m ) WHERE { { SELECT DISTINCT ( COUNT ( ?l ) AS ?u ) ?d WHERE { { ?l property:P361 ?d . ?d rdf:type ontology:Q15989253 . ?l rdf:type ontology:Q5058355 } UNION { ?l property:P361 ?d . ?d rdf:type ontology:Q15989253 . ?l rdf:type ontology:Q15989253 } } GROUP BY ?d } . { SELECT DISTINCT ( COUNT ( ?q ) AS ?v ) WHERE { ?q property:P361 resource:Q79899 . { { ?q rdf:type ontology:Q5058355 } UNION { ?q rdf:type ontology:Q15989253 } } } } . FILTER ( ?u < ?v ) }
0
action count
action less
action union
action find_reverse_tuple_counts
relation part of
type part
type cellular component
action find_reverse_tuple_counts
relation part of
type part
type part
action count
action filter_multi_types
action find_reverse
entity cytoplasm
relation part of
type cellular component
type part
[[{'concept': 'cellular component'}, {'concept': 'part'}], 'part of', {'concept': 'part'}]
SELECT DISTINCT ( COUNT ( ?d ) AS ?m ) WHERE { { SELECT DISTINCT ( COUNT ( ?l ) AS ?u ) ?d WHERE { { ?l property:part_of ?d . ?d rdf:type ontology:part . ?l rdf:type ontology:cellular_component } UNION { ?l property:part_of ?d . ?d rdf:type ontology:part . ?l rdf:type ontology:part } } GROUP BY ?d } . { SELECT DISTINCT ( COUNT ( ?q ) AS ?v ) WHERE { ?q property:part_of resource:cytoplasm . { { ?q rdf:type ontology:cellular_component } UNION { ?q rdf:type ontology:part } } } } . FILTER ( ?u < ?v ) }
[]
Logical Reasoning (All)
Logical|Union|Multiple_Relation
Q12174 Q21127232
P2293 P702
Q863908
USER
Which nucleic acid sequences encode Histone-lysine N-methyltransferase SMYD3 or have genetic connection with obesity ?
OR((Q21127232,P702,c(Q863908)), (Q12174,P2293,c(Q863908)))
action filter_type
action union
action find
entity Q21127232
relation P702
action find
entity Q12174
relation P2293
type Q863908
{'OR': [['Q21127232', 'P702', {'concept': 'Q863908'}], ['Q12174', 'P2293', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?q WHERE { { { resource:Q21127232 property:P702 ?q } UNION { resource:Q12174 property:P2293 ?q } } . ?q rdf:type ontology:Q863908 }
obesity Histone-lysine N-methyltransferase SMYD3
action filter_type
action union
action find
entity Histone-lysine N-methyltransferase SMYD3
relation encoded by
action find
entity obesity
relation genetic association
type nucleic acid sequence
{'OR': [['Histone-lysine N-methyltransferase SMYD3', 'encoded by', {'concept': 'nucleic acid sequence'}], ['obesity', 'genetic association', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?q WHERE { { { resource:Histone-lysine_N-methyltransferase_SMYD3 property:encoded_by ?q } UNION { resource:obesity property:genetic_association ?q } } . ?q rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18048093 Q18044275 Q18029917 Q14881694 Q18053460 Q18046540 Q18053590 Q18030218 Q14865077 Q18053699
SYSTEM
Some of them are UMODL1, STIM2, NDUFA8, TBXAS1, RASGEF1A, UBTD1, MAPK15, NRF1, SERPING1, CADM2
Q18052481 Q18046652 Q18031996 Q18050866 Q18054420 Q18044275 Q18030378 Q18051457 Q18044809 Q17915447 Q18034615 Q20763432 Q14914279 Q18045729 Q18038226 Q18049381 Q18042069 Q18041572 Q18038823 Q18049299 Q18041775 Q18052265 Q18030642 Q18038318 Q18049666 Q18041944 Q14912092 Q17854930 Q18052509 Q18034688 Q17916097 Q14911859 Q14878336 Q18060170 Q14902484 Q18037755 Q18053782 Q18043125 Q18045594 Q18042565 Q18053078 Q18035589 Q18039975 Q18041607 Q18052370 Q18051824 Q18047860 Q18052377 Q18031117 Q18049968 Q15316514 Q18036643 Q18036645 Q18048523 Q18045327 Q18031692 Q18035630 Q18046582 Q18034042 Q18046745 Q18024807 Q18031341 Q14907479 Q18035035 Q17709777 Q18041732 Q18033909 Q18034642 Q18029694 Q18033112 Q18030965 Q18031549 Q18034037 Q17854978 Q18048106 Q18036452 Q18031334 Q18037595 Q18040542 Q18041544 Q5044069 Q18032648 Q18036999 Q17917132 Q18035326 Q18043047 Q5204531 Q18041995 Q18053504 Q18048686 Q18051862 Q18041645 Q18031156 Q18028566 Q17859798 Q18028644 Q18036609 Q18053009 Q18056527 Q14911955 Q18031809 Q18039881 Q18048056 Q18039666 Q18046702 Q14907990 Q20767108 Q5145886 Q18054353 Q18036672 Q18036675 Q18058955 Q14903153 Q18039714 Q18047088 Q18039812 Q18042077 Q20781700 Q14865077 Q14916168 Q18026481 Q18026870 Q18042925 Q18050946 Q18056715 Q18052451 Q18055255 Q18037123 Q18037120 Q18041512 Q18028350 Q18042559 Q18049238 Q18029821 Q18027576 Q18048880 Q18027475 Q18043134 Q18026244 Q18035350 Q15330855 Q18039741 Q15311620 Q18034925 Q18030950 Q14882921 Q18031100 Q18036733 Q18036984 Q18035502 Q18034993 Q18035501 Q18049300 Q18046678 Q18037864 Q18037868 Q18037904 Q18016416 Q18039623 Q18028073 Q18050606 Q17917694 Q18042901 Q18050505 Q18045467 Q18041856 Q18034027 Q18257565 Q18041009 Q17855648 Q18034584 Q18026807 Q18030785 Q18033776 Q18033774 Q18040397 Q1340834 Q18042617 Q18043072 Q18037889 Q18042886 Q18049080 Q18053538 Q18041679 Q18045682 Q4682275 Q14912969 Q18041070 Q18047163 Q18047169 Q18046300 Q17914024 Q18056535 Q17915128 Q18050697 Q18042664 Q18041691 Q18048027 Q18031587 Q17861975 Q18030938 Q18030356 Q18029917 Q18048640 Q18054365 Q18030560 Q18030218 Q18036702 Q18036664 Q18036665 Q18030409 Q14906427 Q18050472 Q18028136 Q18043088 Q18034638 Q14914156 Q18029402 Q18027645 Q18040102 Q17917649 Q17917642 Q15316617 Q18031360 Q14913093 Q18025101 Q18046312 Q18041753 Q18056481 Q18041288 Q18039878 Q18037683 Q14907739 Q18051095 Q18043139 Q18041216 Q18041210 Q18037055 Q14877701 Q18053590 Q18041136 Q18038119 Q18049386 Q18026492 Q18045382 Q18053056 Q18049220 Q20785768 Q18057689 Q18040719 Q14905674 Q20781641 Q18046206 Q5573603 Q18051841 Q18035082 Q18048093 Q18047238 Q17848412 Q18035122 Q18053691 Q18029847 Q18053695 Q17914010 Q18053699 Q18052491 Q18048488 Q18048527 Q18046117 Q20970198 Q18032199 Q14881694 Q18035011 Q14863330 Q18036690 Q18034740 Q18056808 Q17709656 Q18053973 Q18043142 Q18028894 Q17916236 Q18046182 Q18036575 Q18045844 Q18045846 Q14912501 Q18028304 Q14908063 Q18030799 Q18046540 Q18033169 Q18045477 Q18051063 Q18041364 Q17916054 Q18041088 Q18037897 Q18049758 Q18053460 Q18046806 Q18058211 Q17859830 Q18036957 Q18057391 Q18048616 Q18034882 Q18029805 Q14902310 Q18053142 Q18048035 Q18046721 Q18298365 Q18039945 Q18039766 Q18047311 Q18045627 Q18052365 Q14913016 Q18049956 Q20970098 Q15322924 Q18048105 Q17854514 Q18051388 Q18034627 Q18041720 Q18033233 Q18031953 Q18034058 Q18037840 Q18050821 Q18056164 Q18033875 Q18031056 Q18038298 Q18054763 Q18041972 Q248215 Q18042708 Q18039842 Q14864434 Q18032024 Q18046841 Q18030807 Q18031635 Q18043110 Q18052225 Q18045547 Q18045546 Q18035334 Q18046576 Q14839826 Q18027898 Q18030571 Q18055892 Q18037030 Q18047182 Q18037069 Q18029872 Q18040412 Q18037060
OR((Q21127232,P702,c(Q863908)), (Q12174,P2293,c(Q863908)))
action filter_type
action union
action find
entity Q21127232
relation P702
action find
entity Q12174
relation P2293
type Q863908
[ANSWERS] encode Histone-lysine N-methyltransferase SMYD3 or have genetic connection with obesity
{'OR': [['Q21127232', 'P702', {'concept': 'Q863908'}], ['Q12174', 'P2293', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?q WHERE { { { resource:Q21127232 property:P702 ?q } UNION { resource:Q12174 property:P2293 ?q } } . ?q rdf:type ontology:Q863908 }
TMEM229B ALPK1 TIMP2 ZBTB46 EPHA6 STIM2 PCDH9 GSG1L SQRDL ECT2 NOS1AP LOC150935 NPC1 SMYD3 EHF SLC36A4 HR ARMC4 SLCO3A1 TMC2 NIPSNAP3B MBOAT1 POLD1 TBL2 NLRP8 ZNF446 CD46 CACNA2D1 FSIP1 SCRN1 CELA1 CREBBP UBE3A TPTE2P1 PCSK2 WHRN C4orf22 SORCS2 CARD9 ANKS1B DCP1B C6orf10 CRYL1 ARHGEF10L AK8 ATP8B3 RNFT2 RASEF RGS7 ACMSD KCNN3 CEP152 IGSF9B COL23A1 BACH2 SPTB TCFL5 CCDC33 TM9SF2 PBX4 FUT2 RYR2 ADCYAP1 ARPC2 ADCY9 RHOT1 DCLK1 PHACTR2 MYB KMO PVALB SLC8A1 NRXN3 CACNB2 NAV2 TREX1 RSU1 CADM1 WWOX SAMD4B CPT1A SLMAP ZC3H4 ERBB3 NPM2 PPM1H DCTD CEP72 KIF6 PKHD1L1 CCDC27 PLEKHG6 RNF2 ABLIM1 CDH2 LPP SHANK2 CLYBL ZNF470 GIPR SYT1 NTM FHDC1 TFPT CPEB4 SLC30A8 FLJ33534 COL4A1 CYB561D1 SAMD4A PDZD2 FBXO47 BMP2 PKN3 DOCK8 NOX4 BDP1 LOC286238 SERPING1 GCH1 GRIA1 NCKAP1L PAK5 MACROD2 CFAP77 CCDC67 FAM19A2 PSD3 FAM189A1 AIM1L KPNA3 DPYSL5 FAM129A PPP1R12B SP110 NACC1 ICA1 CC2D2A GNAT2 DLC1 XDH MDFIC NIPBL NUP153 PTPRN2 HMOX1 RFC5 CUL9 FBXL7 SORBS1 ABCC9 TACC2 RLN3 EDEM3 MOXD1 ZZZ3 AUTS2 ADSS CTNNA3 ITPR1 B3GAT2 EXT1 CAMK1D AFAP1L1 SLC22A23 SOX6 ITGBL1 PUM3 RIN2 CAMK2A GREB1 HBBP1 PRKG1 SEMA5A PKD2L1 HDAC7 ECE1 PAK6 PLEKHG1 SIPA1L1 ANO2 GALNT13 BRAT1 PANK4 CSMD1 ADORA3 CHL1 ANKRD16 MXD3 ARHGAP24 WDR59 DMRT1 TMEM82 EBF1 SGCZ MRPS22 KIRREL RHPN2 SLIT1 CHRNA3 PTPRD PAX5 NDUFA8 SPECC1 BTBD8 PIP4K2A NRF1 HECW1 UNC13A MYO16 PDE4D TWIST1 PPARGC1B KCNB1 LRFN2 ZNF536 IL1RN MYO1B IFNGR2 GLRX5 ETV5 ETS1 GTF2B S100P CBS GABRB1 TTLL7 SLC29A3 SHISA6 BCAS3 SPOCK3 DSTYK UGT2B7 LAYN NCEH1 TMED9 RBFOX1 CLEC16A SLC4A1 MAPK15 VSIG10 CCDC69 TMEM45B GRID2 HPSE2 METTL15 C8orf34 LGALS17A KLHL31 MYO3A DCC LOC284395 HMBOX1 GPC5 SAMD13 FARP1 UMODL1 TRAPPC9 BICD1 PATJ RICTOR NAP1L1 IPMK DLG2 CADM2 MDGA2 DDX60L UBXN11 NOX5 GMDS TSC2 TBXAS1 GPC6 BDNF NMNAT2 MAGI2 OR5T3 ADCY5 HS6ST3 LRRC7 MATK ELAVL4 SPAG16 DENND3 NBEAL1 RTN4R FTO KLKB1 SRL MAP2K5 UBTD1 UNC5C PKNOX2 MPP7 CDKAL1 EFNA1 CRCT1 CNTNAP2 C2CD4C RASGEF1A EEPD1 ACBD7 CDH4 MPRIP AGMO ZNF585B KBTBD11 MYO10 ESR1 C1orf168 STON2 KCNIP4 FUK WDPCP NXPH1 SLC25A2 RAB17 LINGO2 JDP2 TMEM18 PLPPR5 TRPC4 NAV1 CA8 SERPINA12 HDAC9 FGGY B3GALT1 TFAP2B TGFBRAP1 SH2B1 MYO3B LHFPL3 SLC6A5 RBBP6 AATF TPRN RADIL DYNC1I1 OTUD7B ARHGEF3 CYP2E1 TMOD1 COLEC12 PRM1 SNRPN RPTOR SLC25A48 SLC28A3 LHPP SEMA3A BICC1 ABO ILF3 PKP2 GPR141 ASTN2 FAM110A ANKS1A NCAM2 PCF11 MTUS2
UMODL1, STIM2, NDUFA8, TBXAS1, RASGEF1A, UBTD1, MAPK15, NRF1, SERPING1 and CADM2 encode Histone-lysine N-methyltransferase SMYD3 or have genetic connection with obesity
UMODL1 STIM2 NDUFA8 TBXAS1 RASGEF1A UBTD1 MAPK15 NRF1 SERPING1 CADM2
action filter_type
action union
action find
entity Histone-lysine N-methyltransferase SMYD3
relation encoded by
action find
entity obesity
relation genetic association
type nucleic acid sequence
{'OR': [['Histone-lysine N-methyltransferase SMYD3', 'encoded by', {'concept': 'nucleic acid sequence'}], ['obesity', 'genetic association', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?q WHERE { { { resource:Histone-lysine_N-methyltransferase_SMYD3 property:encoded_by ?q } UNION { resource:obesity property:genetic_association ?q } } . ?q rdf:type ontology:nucleic_acid_sequence }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P361
Q15989253 Q15989253 Q5058355
USER
How many parts are around 8 parts or cellular components a portion of ?
(c(Q15989253)|c(Q5058355),P361,c(Q15989253))
action count
action approx
action union
action find_reverse_tuple_counts
relation P361
type Q15989253
type Q15989253
action find_reverse_tuple_counts
relation P361
type Q15989253
type Q5058355
value 8
[[{'concept': 'Q15989253'}, {'concept': 'Q5058355'}], 'P361', {'concept': 'Q15989253'}]
SELECT DISTINCT ( COUNT ( ?s ) AS ?z ) WHERE { { SELECT DISTINCT ( COUNT ( ?g ) AS ?j ) ?s WHERE { ?g rdf:type ?t . VALUES ( ?t ) { ( ontology:Q15989253 ) ( ontology:Q5058355 ) } } GROUP BY ?s } . FILTER ( ?j = 8 ) }
action count
action approx
action union
action find_reverse_tuple_counts
relation part of
type part
type part
action find_reverse_tuple_counts
relation part of
type part
type cellular component
value 8
[[{'concept': 'part'}, {'concept': 'cellular component'}], 'part of', {'concept': 'part'}]
SELECT DISTINCT ( COUNT ( ?s ) AS ?z ) WHERE { { SELECT DISTINCT ( COUNT ( ?g ) AS ?j ) ?s WHERE { ?g rdf:type ?t . VALUES ( ?t ) { ( ontology:part ) ( ontology:cellular_component ) } } GROUP BY ?s } . FILTER ( ?j = 8 ) }
[]
part part cellular component
SYSTEM
7
Q24774274 Q24771060 Q24780081 Q24739502 Q24769952 Q24742069 Q24720586
(c(Q15989253)|c(Q5058355),P361,c(Q15989253))
action count
action approx
action union
action find_reverse_tuple_counts
relation P361
type Q15989253
type Q15989253
action find_reverse_tuple_counts
relation P361
type Q15989253
type Q5058355
value 8
[ANSWER]
[[{'concept': 'Q15989253'}, {'concept': 'Q5058355'}], 'P361', {'concept': 'Q15989253'}]
SELECT DISTINCT ( COUNT ( ?s ) AS ?z ) WHERE { { SELECT DISTINCT ( COUNT ( ?g ) AS ?j ) ?s WHERE { ?g rdf:type ?t . VALUES ( ?t ) { ( ontology:Q15989253 ) ( ontology:Q5058355 ) } } GROUP BY ?s } . FILTER ( ?j = 8 ) }
Winged helix-turn-helix DNA-binding domain Acyl-CoA N-acyltransferase Immunoglobulin E-set Armadillo-like helical NAD(P)-binding domain EF-hand domain pair Ribonuclease H-like domain
7
action count
action approx
action union
action find_reverse_tuple_counts
relation part of
type part
type part
action find_reverse_tuple_counts
relation part of
type part
type cellular component
value 8
[[{'concept': 'part'}, {'concept': 'cellular component'}], 'part of', {'concept': 'part'}]
SELECT DISTINCT ( COUNT ( ?s ) AS ?z ) WHERE { { SELECT DISTINCT ( COUNT ( ?g ) AS ?j ) ?s WHERE { ?g rdf:type ?t . VALUES ( ?t ) { ( ontology:part ) ( ontology:cellular_component ) } } GROUP BY ?s } . FILTER ( ?j = 8 ) }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q18048093
P684
Q863908
USER
What is the name of the species that has UMODL1 as its orthologous gene ?
(c(Q863908),P684,Q18048093)
action filter_type
action find
entity Q18048093
relation P684
type Q863908
[{'concept': 'Q863908'}, 'P684', 'Q18048093']
SELECT DISTINCT ?f WHERE { resource:Q18048093 property:P684 ?f . ?f rdf:type ontology:Q863908 }
UMODL1
action filter_type
action find
entity UMODL1
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'UMODL1']
SELECT DISTINCT ?f WHERE { resource:UMODL1 property:ortholog ?f . ?f rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18257070
SYSTEM
Umodl1
Q18257070
(c(Q863908),P684,Q18048093)
action filter_type
action find
entity Q18048093
relation P684
type Q863908
The name of the species that has UMODL 1 as its orthologous gene is [ANSWER]
[{'concept': 'Q863908'}, 'P684', 'Q18048093']
SELECT DISTINCT ?f WHERE { resource:Q18048093 property:P684 ?f . ?f rdf:type ontology:Q863908 }
Umodl1
The name of the species that has UMODL 1 as its orthologous gene is Umodl1
Umodl1
action filter_type
action find
entity UMODL1
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'UMODL1']
SELECT DISTINCT ?f WHERE { resource:UMODL1 property:ortholog ?f . ?f rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q18048093
P688
Q181394
USER
What do UMODL1 encode ?
(Q18048093,P688,c(Q181394))
action filter_type
action find
entity Q18048093
relation P688
type Q181394
['Q18048093', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?e WHERE { resource:Q18048093 property:P688 ?e . ?e rdf:type ontology:Q181394 }
UMODL1
action filter_type
action find
entity UMODL1
relation encodes
type nutrient
['UMODL1', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?e WHERE { resource:UMODL1 property:encodes ?e . ?e rdf:type ontology:nutrient }
[]
nutrient
Q21135181 Q21140623
SYSTEM
Uromodulin-like 1, Uromodulin-like 1
Q21135181 Q21140623
(Q18048093,P688,c(Q181394))
action filter_type
action find
entity Q18048093
relation P688
type Q181394
UMODL1 encode s [ANSWERS]
['Q18048093', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?e WHERE { resource:Q18048093 property:P688 ?e . ?e rdf:type ontology:Q181394 }
Uromodulin-like 1 Uromodulin-like 1
UMODL1 encode s Uromodulin-like 1 and Uromodulin-like 1
Uromodulin-like 1 Uromodulin-like 1
action filter_type
action find
entity UMODL1
relation encodes
type nutrient
['UMODL1', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?e WHERE { resource:UMODL1 property:encodes ?e . ?e rdf:type ontology:nutrient }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q24085846
Q181394
USER
And what about hypothetical protein    CT1905?
(Q24085846,P688,c(Q181394))
action filter_type
action find
entity Q24085846
relation P688
type Q181394
['Q24085846', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?s WHERE { resource:Q24085846 property:P688 ?s . ?s rdf:type ontology:Q181394 }
hypothetical protein    CT1905
action filter_type
action find
entity hypothetical protein    CT1905
relation encodes
type nutrient
['hypothetical protein    CT1905', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?s WHERE { resource:hypothetical_protein____CT1905 property:encodes ?s . ?s rdf:type ontology:nutrient }
[]
nutrient
Q23469972
SYSTEM
hypothetical protein    CT1905
Q23469972
(Q24085846,P688,c(Q181394))
action filter_type
action find
entity Q24085846
relation P688
type Q181394
[ANSWER]
['Q24085846', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?s WHERE { resource:Q24085846 property:P688 ?s . ?s rdf:type ontology:Q181394 }
hypothetical protein    CT1905
hypothetical protein    CT1905
action filter_type
action find
entity hypothetical protein    CT1905
relation encodes
type nutrient
['hypothetical protein    CT1905', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?s WHERE { resource:hypothetical_protein____CT1905 property:encodes ?s . ?s rdf:type ontology:nutrient }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q23469972 Q23229825
P688
Q863908
USER
Does hypothetical protein    LSL_1023 encode that nutrient ?
(Q23229825,P688,Q23469972)
action is_in
entity Q23229825
action find
entity Q23469972
relation P688
['Q23229825', 'P688', 'Q23469972']
ASK WHERE { resource:Q23469972 property:P688 resource:Q23229825 }
hypothetical protein    CT1905 hypothetical protein    LSL_1023
action is_in
entity hypothetical protein    LSL_1023
action find
entity hypothetical protein    CT1905
relation encodes
['hypothetical protein    LSL_1023', 'encodes', 'hypothetical protein    CT1905']
ASK WHERE { resource:hypothetical_protein____CT1905 property:encodes resource:hypothetical_protein____LSL_1023 }
[]
nucleic acid sequence
SYSTEM
NO
(Q23229825,P688,Q23469972)
action is_in
entity Q23229825
action find
entity Q23469972
relation P688
[ANSWER]
['Q23229825', 'P688', 'Q23469972']
ASK WHERE { resource:Q23469972 property:P688 resource:Q23229825 }
No
action is_in
entity hypothetical protein    LSL_1023
action find
entity hypothetical protein    CT1905
relation encodes
['hypothetical protein    LSL_1023', 'encodes', 'hypothetical protein    CT1905']
ASK WHERE { resource:hypothetical_protein____CT1905 property:encodes resource:hypothetical_protein____LSL_1023 }
[]
Verification (Boolean) (All)
Verification|3 entities, all direct, 2 are query entities
Q18053699 Q12174 Q18554238
P2293
Q2057971
USER
Is CADM2 genetically linked with obesity and inflammatory spondylopathy ?
(Q18053699,P2293,Q12174) (Q18053699,P2293,Q18554238)
action is_in
entity Q18053699
action intersection
action find_reverse
entity Q12174
relation P2293
action find_reverse
entity Q18554238
relation P2293
['Q18053699', 'P2293', 'Q12174'] ['Q18053699', 'P2293', 'Q18554238']
ASK WHERE { resource:Q18053699 property:P2293 resource:Q12174 . resource:Q18053699 property:P2293 resource:Q18554238 }
CADM2 obesity inflammatory spondylopathy
action is_in
entity CADM2
action intersection
action find_reverse
entity obesity
relation genetic association
action find_reverse
entity inflammatory spondylopathy
relation genetic association
['CADM2', 'genetic association', 'obesity'] ['CADM2', 'genetic association', 'inflammatory spondylopathy']
ASK WHERE { resource:CADM2 property:genetic_association resource:obesity . resource:CADM2 property:genetic_association resource:inflammatory_spondylopathy }
[]
health problem
SYSTEM
YES and NO respectively
(Q18053699,P2293,Q12174) (Q18053699,P2293,Q18554238)
action is_in
entity Q18053699
action intersection
action find_reverse
entity Q12174
relation P2293
action find_reverse
entity Q18554238
relation P2293
[ANSWER]
['Q18053699', 'P2293', 'Q12174'] ['Q18053699', 'P2293', 'Q18554238']
ASK WHERE { resource:Q18053699 property:P2293 resource:Q12174 . resource:Q18053699 property:P2293 resource:Q18554238 }
YES and NO respectively
action is_in
entity CADM2
action intersection
action find_reverse
entity obesity
relation genetic association
action find_reverse
entity inflammatory spondylopathy
relation genetic association
['CADM2', 'genetic association', 'obesity'] ['CADM2', 'genetic association', 'inflammatory spondylopathy']
ASK WHERE { resource:CADM2 property:genetic_association resource:obesity . resource:CADM2 property:genetic_association resource:inflammatory_spondylopathy }
[]