Simple Question (Direct)
Simple Question
Q27760314
P703
Q631147
USER
What is the taxon to which DNA gyrase subunit A    MPN004 belongs to ?
(Q27760314,P703,c(Q631147))
action filter_type
action find
entity Q27760314
relation P703
type Q631147
['Q27760314', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?o WHERE { resource:Q27760314 property:P703 ?o . ?o rdf:type ontology:Q631147 }
DNA gyrase subunit A    MPN004
action filter_type
action find
entity DNA gyrase subunit A    MPN004
relation found in taxon
type infraspecific name
['DNA gyrase subunit A    MPN004', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?o WHERE { resource:DNA_gyrase_subunit_A____MPN004 property:found_in_taxon ?o . ?o rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102990
SYSTEM
Mycoplasma pneumoniae M129
Q21102990
(Q27760314,P703,c(Q631147))
action filter_type
action find
entity Q27760314
relation P703
type Q631147
[ANSWER]
['Q27760314', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?o WHERE { resource:Q27760314 property:P703 ?o . ?o rdf:type ontology:Q631147 }
Mycoplasma pneumoniae M129
Mycoplasma pneumoniae M129
Mycoplasma pneumoniae M129
action filter_type
action find
entity DNA gyrase subunit A    MPN004
relation found in taxon
type infraspecific name
['DNA gyrase subunit A    MPN004', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?o WHERE { resource:DNA_gyrase_subunit_A____MPN004 property:found_in_taxon ?o . ?o rdf:type ontology:infraspecific_name }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q27760314
P681
Q15989253
USER
What is a component of DNA gyrase subunit A    MPN004 ?
(Q27760314,P681,c(Q15989253))
action filter_type
action find
entity Q27760314
relation P681
type Q15989253
['Q27760314', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?v WHERE { resource:Q27760314 property:P681 ?v . ?v rdf:type ontology:Q15989253 }
DNA gyrase subunit A    MPN004
action filter_type
action find
entity DNA gyrase subunit A    MPN004
relation cell component
type part
['DNA gyrase subunit A    MPN004', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?v WHERE { resource:DNA_gyrase_subunit_A____MPN004 property:cell_component ?v . ?v rdf:type ontology:part }
[]
part
Q79899
SYSTEM
cytoplasm
Q79899
(Q27760314,P681,c(Q15989253))
action filter_type
action find
entity Q27760314
relation P681
type Q15989253
A component of DNA gyrase subunit A MPN004 is a [ANSWER]
['Q27760314', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?v WHERE { resource:Q27760314 property:P681 ?v . ?v rdf:type ontology:Q15989253 }
cytoplasm
A component of DNA gyrase subunit A MPN004 is a cytoplasm
cytoplasm
action filter_type
action find
entity DNA gyrase subunit A    MPN004
relation cell component
type part
['DNA gyrase subunit A    MPN004', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?v WHERE { resource:DNA_gyrase_subunit_A____MPN004 property:cell_component ?v . ?v rdf:type ontology:part }
[]
Logical Reasoning (All)
Logical|Intersection|Single_Relation|Incomplete
Q21496052 Q27760314
P681
Q15989253
USER
And also cAMP-specific 3',5'-cyclic phosphodiesterase 4D
AND((Q27760314,P681,c(Q15989253)), (Q21496052,P681,c(Q15989253)))
action filter_type
action intersection
action find
entity Q27760314
relation P681
action find
entity Q21496052
relation P681
type Q15989253
{'AND': [['Q27760314', 'P681', {'concept': 'Q15989253'}], ['Q21496052', 'P681', {'concept': 'Q15989253'}]]}
SELECT DISTINCT ?z WHERE { resource:Q27760314 property:P681 ?z . resource:Q21496052 property:P681 ?z . ?z rdf:type ontology:Q15989253 }
cAMP-specific 3',5'-cyclic phosphodiesterase 4D DNA gyrase subunit A    MPN004
action filter_type
action intersection
action find
entity DNA gyrase subunit A    MPN004
relation cell component
action find
entity cAMP-specific 3',5'-cyclic phosphodiesterase 4D
relation cell component
type part
{'AND': [['DNA gyrase subunit A    MPN004', 'cell component', {'concept': 'part'}], ["cAMP-specific 3',5'-cyclic phosphodiesterase 4D", 'cell component', {'concept': 'part'}]]}
SELECT DISTINCT ?z WHERE { resource:DNA_gyrase_subunit_A____MPN004 property:cell_component ?z . resource:cAMP-specific_3',5'-cyclic_phosphodiesterase_4D property:cell_component ?z . ?z rdf:type ontology:part }
[]
part
Q79899
SYSTEM
cytoplasm
Q79899
AND((Q27760314,P681,c(Q15989253)), (Q21496052,P681,c(Q15989253)))
action filter_type
action intersection
action find
entity Q27760314
relation P681
action find
entity Q21496052
relation P681
type Q15989253
[ANSWER]
{'AND': [['Q27760314', 'P681', {'concept': 'Q15989253'}], ['Q21496052', 'P681', {'concept': 'Q15989253'}]]}
SELECT DISTINCT ?z WHERE { resource:Q27760314 property:P681 ?z . resource:Q21496052 property:P681 ?z . ?z rdf:type ontology:Q15989253 }
cytoplasm
cytoplasm
action filter_type
action intersection
action find
entity DNA gyrase subunit A    MPN004
relation cell component
action find
entity cAMP-specific 3',5'-cyclic phosphodiesterase 4D
relation cell component
type part
{'AND': [['DNA gyrase subunit A    MPN004', 'cell component', {'concept': 'part'}], ["cAMP-specific 3',5'-cyclic phosphodiesterase 4D", 'cell component', {'concept': 'part'}]]}
SELECT DISTINCT ?z WHERE { resource:DNA_gyrase_subunit_A____MPN004 property:cell_component ?z . resource:cAMP-specific_3',5'-cyclic_phosphodiesterase_4D property:cell_component ?z . ?z rdf:type ontology:part }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21496052
P702
Q863908
USER
What encodes cAMP-specific 3',5'-cyclic phosphodiesterase 4D?
(Q79899,P702,c(Q863908))
action filter_type
action find
entity Q21496052
relation P702
type Q863908
['Q79899', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:Q863908 . resource:Q21496052 property:P702 ?b }
cAMP-specific 3',5'-cyclic phosphodiesterase 4D
action filter_type
action find
entity cAMP-specific 3',5'-cyclic phosphodiesterase 4D
relation encoded by
type nucleic acid sequence
['cytoplasm', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:nucleic_acid_sequence . resource:cAMP-specific_3',5'-cyclic_phosphodiesterase_4D property:encoded_by ?b }
[]
nucleic acid sequence
Q18298724
SYSTEM
Pde4d
Q18298724
(Q79899,P702,c(Q863908))
action filter_type
action find
entity Q21496052
relation P702
type Q863908
[ANSWER] encodes cAMP-specific 3',5'-cyclic phosphodiesterase 4D
['Q79899', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:Q863908 . resource:Q21496052 property:P702 ?b }
Pde4d
Pde4d encodes cAMP-specific 3',5'-cyclic phosphodiesterase 4D
Pde4d
action filter_type
action find
entity cAMP-specific 3',5'-cyclic phosphodiesterase 4D
relation encoded by
type nucleic acid sequence
['cytoplasm', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:nucleic_acid_sequence . resource:cAMP-specific_3',5'-cyclic_phosphodiesterase_4D property:encoded_by ?b }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q18298724 Q21495922
P702
Q181394
USER
Does that nucleic acid sequence encode Low-density lipoprotein receptor-related protein 6 ?
(Q21495922,P702,Q18298724)
action is_in
entity Q21495922
action find
entity Q18298724
relation P702
['Q21495922', 'P702', 'Q18298724']
ASK WHERE { resource:Q18298724 property:P702 resource:Q21495922 }
Pde4d Low-density lipoprotein receptor-related protein 6
action is_in
entity Low-density lipoprotein receptor-related protein 6
action find
entity Pde4d
relation encoded by
['Low-density lipoprotein receptor-related protein 6', 'encoded by', 'Pde4d']
ASK WHERE { resource:Pde4d property:encoded_by resource:Low-density_lipoprotein_receptor-related_protein_6 }
[]
nutrient
SYSTEM
NO
(Q21495922,P702,Q18298724)
action is_in
entity Q21495922
action find
entity Q18298724
relation P702
[ANSWER]
['Q21495922', 'P702', 'Q18298724']
ASK WHERE { resource:Q18298724 property:P702 resource:Q21495922 }
No
action is_in
entity Low-density lipoprotein receptor-related protein 6
action find
entity Pde4d
relation encoded by
['Low-density lipoprotein receptor-related protein 6', 'encoded by', 'Pde4d']
ASK WHERE { resource:Pde4d property:encoded_by resource:Low-density_lipoprotein_receptor-related_protein_6 }
[]
Verification (Boolean) (All)
Verification|3 entities, all direct, 2 are query entities
Q27760314 Q24373738 Q24404579
P702
Q863908
USER
Is DNA gyrase subunit A    MPN004 encoded by Fam178b and LOC102546322 ?
(Q27760314,P702,Q24373738) (Q27760314,P702,Q24404579)
action is_in
entity Q27760314
action intersection
action find_reverse
entity Q24373738
relation P702
action find_reverse
entity Q24404579
relation P702
['Q27760314', 'P702', 'Q24373738'] ['Q27760314', 'P702', 'Q24404579']
ASK WHERE { resource:Q27760314 property:P702 resource:Q24373738 . resource:Q27760314 property:P702 resource:Q24404579 }
DNA gyrase subunit A    MPN004 Fam178b LOC102546322
action is_in
entity DNA gyrase subunit A    MPN004
action intersection
action find_reverse
entity Fam178b
relation encoded by
action find_reverse
entity LOC102546322
relation encoded by
['DNA gyrase subunit A    MPN004', 'encoded by', 'Fam178b'] ['DNA gyrase subunit A    MPN004', 'encoded by', 'LOC102546322']
ASK WHERE { resource:DNA_gyrase_subunit_A____MPN004 property:encoded_by resource:Fam178b . resource:DNA_gyrase_subunit_A____MPN004 property:encoded_by resource:LOC102546322 }
[]
nucleic acid sequence
SYSTEM
NO
(Q27760314,P702,Q24373738) (Q27760314,P702,Q24404579)
action is_in
entity Q27760314
action intersection
action find_reverse
entity Q24373738
relation P702
action find_reverse
entity Q24404579
relation P702
[ANSWER]
['Q27760314', 'P702', 'Q24373738'] ['Q27760314', 'P702', 'Q24404579']
ASK WHERE { resource:Q27760314 property:P702 resource:Q24373738 . resource:Q27760314 property:P702 resource:Q24404579 }
No
action is_in
entity DNA gyrase subunit A    MPN004
action intersection
action find_reverse
entity Fam178b
relation encoded by
action find_reverse
entity LOC102546322
relation encoded by
['DNA gyrase subunit A    MPN004', 'encoded by', 'Fam178b'] ['DNA gyrase subunit A    MPN004', 'encoded by', 'LOC102546322']
ASK WHERE { resource:DNA_gyrase_subunit_A____MPN004 property:encoded_by resource:Fam178b . resource:DNA_gyrase_subunit_A____MPN004 property:encoded_by resource:LOC102546322 }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q18298724
P688
Q181394
USER
Which nutrient is Pde4d an encoding of ?
(Q18298724,P688,c(Q181394))
action filter_type
action find
entity Q18298724
relation P688
type Q181394
['Q18298724', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?s WHERE { resource:Q18298724 property:P688 ?s . ?s rdf:type ontology:Q181394 }
Pde4d
action filter_type
action find
entity Pde4d
relation encodes
type nutrient
['Pde4d', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?s WHERE { resource:Pde4d property:encodes ?s . ?s rdf:type ontology:nutrient }
[]
nutrient
Q21496052
SYSTEM
cAMP-specific 3',5'-cyclic phosphodiesterase 4D
Q21496052
(Q18298724,P688,c(Q181394))
action filter_type
action find
entity Q18298724
relation P688
type Q181394
And [ANSWER] is Pde4d an encoding of
['Q18298724', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?s WHERE { resource:Q18298724 property:P688 ?s . ?s rdf:type ontology:Q181394 }
cAMP-specific 3',5'-cyclic phosphodiesterase 4D
And cAMP-specific 3',5'-cyclic phosphodiesterase 4D is Pde4d an encoding of
cAMP-specific 3',5'-cyclic phosphodiesterase 4D
action filter_type
action find
entity Pde4d
relation encodes
type nutrient
['Pde4d', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?s WHERE { resource:Pde4d property:encodes ?s . ?s rdf:type ontology:nutrient }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21496052
P682
Q2996394
USER
Which biological process is that nutrient involved in ?
(Q21496052,P682,c(Q2996394))
action filter_type
action find
entity Q21496052
relation P682
type Q2996394
['Q21496052', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?h WHERE { resource:Q21496052 property:P682 ?h . ?h rdf:type ontology:Q2996394 }
cAMP-specific 3',5'-cyclic phosphodiesterase 4D
action filter_type
action find
entity cAMP-specific 3',5'-cyclic phosphodiesterase 4D
relation biological process
type biological process
["cAMP-specific 3',5'-cyclic phosphodiesterase 4D", 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?h WHERE { resource:cAMP-specific_3',5'-cyclic_phosphodiesterase_4D property:biological_process ?h . ?h rdf:type ontology:biological_process }
[]
biological process
Q14819471
SYSTEM
leukocyte migration
Q14819471
(Q21496052,P682,c(Q2996394))
action filter_type
action find
entity Q21496052
relation P682
type Q2996394
That nutrient is involved in [ANSWER]
['Q21496052', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?h WHERE { resource:Q21496052 property:P682 ?h . ?h rdf:type ontology:Q2996394 }
leukocyte migration
That nutrient is involved in leukocyte migration
leukocyte migration
action filter_type
action find
entity cAMP-specific 3',5'-cyclic phosphodiesterase 4D
relation biological process
type biological process
["cAMP-specific 3',5'-cyclic phosphodiesterase 4D", 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?h WHERE { resource:cAMP-specific_3',5'-cyclic_phosphodiesterase_4D property:biological_process ?h . ?h rdf:type ontology:biological_process }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q24111636 Q21495922
P688
Q863908
USER
Which nucleic acid sequences encode Low-density lipoprotein receptor-related protein 6 or hypothetical protein    SMc01574 ?
OR((c(Q863908),P688,Q21495922), (c(Q863908),P688,Q24111636))
action filter_type
action union
action find_reverse
entity Q21495922
relation P688
action find_reverse
entity Q24111636
relation P688
type Q863908
{'OR': [[{'concept': 'Q863908'}, 'P688', 'Q21495922'], [{'concept': 'Q863908'}, 'P688', 'Q24111636']]}
SELECT DISTINCT ?o WHERE { { VALUES ( ?y ) { ( resource:Q21495922 ) ( resource:Q24111636 ) } . ?o property:P688 ?y } . ?o rdf:type ontology:Q863908 }
hypothetical protein    SMc01574 Low-density lipoprotein receptor-related protein 6
action filter_type
action union
action find_reverse
entity Low-density lipoprotein receptor-related protein 6
relation encodes
action find_reverse
entity hypothetical protein    SMc01574
relation encodes
type nucleic acid sequence
{'OR': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'Low-density lipoprotein receptor-related protein 6'], [{'concept': 'nucleic acid sequence'}, 'encodes', 'hypothetical protein    SMc01574']]}
SELECT DISTINCT ?o WHERE { { VALUES ( ?y ) { ( resource:Low-density_lipoprotein_receptor-related_protein_6 ) ( resource:hypothetical_protein____SMc01574 ) } . ?o property:encodes ?y } . ?o rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18252094 Q23169969
SYSTEM
Lrp6, hypothetical protein    SMc01574
Q18252094 Q23169969
OR((c(Q863908),P688,Q21495922), (c(Q863908),P688,Q24111636))
action filter_type
action union
action find_reverse
entity Q21495922
relation P688
action find_reverse
entity Q24111636
relation P688
type Q863908
[ANSWERS]
{'OR': [[{'concept': 'Q863908'}, 'P688', 'Q21495922'], [{'concept': 'Q863908'}, 'P688', 'Q24111636']]}
SELECT DISTINCT ?o WHERE { { VALUES ( ?y ) { ( resource:Q21495922 ) ( resource:Q24111636 ) } . ?o property:P688 ?y } . ?o rdf:type ontology:Q863908 }
Lrp6 hypothetical protein    SMc01574
Lrp6 and hypothetical protein SMc01574 encode Low-density lipoprotein receptor-related protein 6 or hypothetical protein SMc01574
Lrp6 hypothetical protein    SMc01574
action filter_type
action union
action find_reverse
entity Low-density lipoprotein receptor-related protein 6
relation encodes
action find_reverse
entity hypothetical protein    SMc01574
relation encodes
type nucleic acid sequence
{'OR': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'Low-density lipoprotein receptor-related protein 6'], [{'concept': 'nucleic acid sequence'}, 'encodes', 'hypothetical protein    SMc01574']]}
SELECT DISTINCT ?o WHERE { { VALUES ( ?y ) { ( resource:Low-density_lipoprotein_receptor-related_protein_6 ) ( resource:hypothetical_protein____SMc01574 ) } . ?o property:encodes ?y } . ?o rdf:type ontology:nucleic_acid_sequence }
[]