Simple Question (Direct)
Simple Question
Q21109179
P682
Q1190554
USER
What biological process is Sorbin and SH3 domain-containing protein 2 involved in ?
(Q21109179,P682,c(Q1190554))
action filter_type
action find
entity Q21109179
relation P682
type Q1190554
['Q21109179', 'P682', {'concept': 'Q1190554'}]
SELECT DISTINCT ?k WHERE { ?k rdf:type ontology:Q1190554 . resource:Q21109179 property:P682 ?k }
Sorbin and SH3 domain-containing protein 2
action filter_type
action find
entity Sorbin and SH3 domain-containing protein 2
relation biological process
type event
['Sorbin and SH3 domain-containing protein 2', 'biological process', {'concept': 'event'}]
SELECT DISTINCT ?k WHERE { ?k rdf:type ontology:event . resource:Sorbin_and_SH3_domain-containing_protein_2 property:biological_process ?k }
[]
event
Q2996394
SYSTEM
biological process
Q2996394
(Q21109179,P682,c(Q1190554))
action filter_type
action find
entity Q21109179
relation P682
type Q1190554
[ANSWER] is Sorbin and SH3 domain-containing protein 2 involved in
['Q21109179', 'P682', {'concept': 'Q1190554'}]
SELECT DISTINCT ?k WHERE { ?k rdf:type ontology:Q1190554 . resource:Q21109179 property:P682 ?k }
biological process
Biological process is Sorbin and SH3 domain-containing protein 2 involved in
biological process
action filter_type
action find
entity Sorbin and SH3 domain-containing protein 2
relation biological process
type event
['Sorbin and SH3 domain-containing protein 2', 'biological process', {'concept': 'event'}]
SELECT DISTINCT ?k WHERE { ?k rdf:type ontology:event . resource:Sorbin_and_SH3_domain-containing_protein_2 property:biological_process ?k }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21109179
P688
Q863908
USER
Which nucleic acid sequence encodes Sorbin and SH3 domain-containing protein 2 ?
(c(Q863908),P688,Q21109179)
action filter_type
action find_reverse
entity Q21109179
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q21109179']
SELECT DISTINCT ?e WHERE { ?e property:P688 resource:Q21109179 . ?e rdf:type ontology:Q863908 }
Sorbin and SH3 domain-containing protein 2
action filter_type
action find_reverse
entity Sorbin and SH3 domain-containing protein 2
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Sorbin and SH3 domain-containing protein 2']
SELECT DISTINCT ?e WHERE { ?e property:encodes resource:Sorbin_and_SH3_domain-containing_protein_2 . ?e rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18032960
SYSTEM
SORBS2
Q18032960
(c(Q863908),P688,Q21109179)
action filter_type
action find_reverse
entity Q21109179
relation P688
type Q863908
[ANSWER] encodes Sorbin and SH3 domain-containing protein 2
[{'concept': 'Q863908'}, 'P688', 'Q21109179']
SELECT DISTINCT ?e WHERE { ?e property:P688 resource:Q21109179 . ?e rdf:type ontology:Q863908 }
SORBS2
SORBS2 encodes Sorbin and SH3 domain-containing protein 2
SORBS2
action filter_type
action find_reverse
entity Sorbin and SH3 domain-containing protein 2
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Sorbin and SH3 domain-containing protein 2']
SELECT DISTINCT ?e WHERE { ?e property:encodes resource:Sorbin_and_SH3_domain-containing_protein_2 . ?e rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18032960
P684
Q863908
USER
What is an otrhologus gene for that one ?
(Q18032960,P684,c(Q863908))
action filter_type
action find
entity Q18032960
relation P684
type Q863908
['Q18032960', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?i WHERE { resource:Q18032960 property:P684 ?i . ?i rdf:type ontology:Q863908 }
SORBS2
action filter_type
action find
entity SORBS2
relation ortholog
type nucleic acid sequence
['SORBS2', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?i WHERE { resource:SORBS2 property:ortholog ?i . ?i rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18298304
SYSTEM
Sorbs2
Q18298304
(Q18032960,P684,c(Q863908))
action filter_type
action find
entity Q18032960
relation P684
type Q863908
An otrhologus gene for that one is the [ANSWER]
['Q18032960', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?i WHERE { resource:Q18032960 property:P684 ?i . ?i rdf:type ontology:Q863908 }
Sorbs2
An otrhologus gene for that one is the Sorbs2
Sorbs2
action filter_type
action find
entity SORBS2
relation ortholog
type nucleic acid sequence
['SORBS2', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?i WHERE { resource:SORBS2 property:ortholog ?i . ?i rdf:type ontology:nucleic_acid_sequence }
[]
Logical Reasoning (All)
Logical|Union|Multiple_Relation
Q21106130 Q18032960
P702 P684
Q863908
USER
Which nucleic acid sequences are an orthologous gene for SORBS2 or are the gene that encodes Endogenous retrovirus group K member 6 Gag polyprotein ?
OR((Q18032960,P684,c(Q863908)), (Q21106130,P702,c(Q863908)))
action filter_type
action union
action find
entity Q18032960
relation P684
action find
entity Q21106130
relation P702
type Q863908
{'OR': [['Q18032960', 'P684', {'concept': 'Q863908'}], ['Q21106130', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?u WHERE { { { resource:Q18032960 property:P684 ?u } UNION { resource:Q21106130 property:P702 ?u } } . ?u rdf:type ontology:Q863908 }
Endogenous retrovirus group K member 6 Gag polyprotein SORBS2
action filter_type
action union
action find
entity SORBS2
relation ortholog
action find
entity Endogenous retrovirus group K member 6 Gag polyprotein
relation encoded by
type nucleic acid sequence
{'OR': [['SORBS2', 'ortholog', {'concept': 'nucleic acid sequence'}], ['Endogenous retrovirus group K member 6 Gag polyprotein', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?u WHERE { { { resource:SORBS2 property:ortholog ?u } UNION { resource:Endogenous_retrovirus_group_K_member_6_Gag_polyprotein property:encoded_by ?u } } . ?u rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18045536 Q18298304
SYSTEM
ERVK-6, Sorbs2
Q18045536 Q18298304
OR((Q18032960,P684,c(Q863908)), (Q21106130,P702,c(Q863908)))
action filter_type
action union
action find
entity Q18032960
relation P684
action find
entity Q21106130
relation P702
type Q863908
[ANSWERS] are an orthologous gene for SORBS2 or are the gene that encodes Endogenous retrovirus group K member 6 Gag polyprotein
{'OR': [['Q18032960', 'P684', {'concept': 'Q863908'}], ['Q21106130', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?u WHERE { { { resource:Q18032960 property:P684 ?u } UNION { resource:Q21106130 property:P702 ?u } } . ?u rdf:type ontology:Q863908 }
ERVK-6 Sorbs2
ERVK-6 and Sorbs2 are an orthologous gene for SORBS2 or are the gene that encodes Endogenous retrovirus group K member 6 Gag polyprotein
ERVK-6 Sorbs2
action filter_type
action union
action find
entity SORBS2
relation ortholog
action find
entity Endogenous retrovirus group K member 6 Gag polyprotein
relation encoded by
type nucleic acid sequence
{'OR': [['SORBS2', 'ortholog', {'concept': 'nucleic acid sequence'}], ['Endogenous retrovirus group K member 6 Gag polyprotein', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?u WHERE { { { resource:SORBS2 property:ortholog ?u } UNION { resource:Endogenous_retrovirus_group_K_member_6_Gag_polyprotein property:encoded_by ?u } } . ?u rdf:type ontology:nucleic_acid_sequence }
[]
Clarification
Quantitative|Count|Single entity type|Indirect
P684
Q863908
USER
How many nucleic acid sequences are the name of the species that have that nucleic acid sequence as their orthologous gene ?
(c(Q863908),P684,Q18298304)
[{'concept': 'Q863908'}, 'P684', 'Q18298304']
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { ?z property:P684 resource:Q18298304 . ?z rdf:type ontology:Q863908 }
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'Sorbs2']
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { ?z property:ortholog resource:Sorbs2 . ?z rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Quantitative|Count|Single entity type|Clarification
Q18045536
SYSTEM
Did you mean ERVK-6 ?
(c(Q863908),P684,Q18045536) (c(Q863908),P684,Q18298304)
[ANSWER]
[{'concept': 'Q863908'}, 'P684', 'Q18045536'] [{'concept': 'Q863908'}, 'P684', 'Q18298304']
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { ?z property:P684 resource:Q18298304 . ?z rdf:type ontology:Q863908 }
Did you mean ERVK-6 ?
ERVK-6
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'ERVK-6'] [{'concept': 'nucleic acid sequence'}, 'ortholog', 'Sorbs2']
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { ?z property:ortholog resource:Sorbs2 . ?z rdf:type ontology:nucleic_acid_sequence }
[]
Quantitative Reasoning (Count) (All)
USER
No, I meant Sorbs2. Could you tell me the answer for that?
(c(Q863908),P684,Q18298304)
Q18298304
[{'concept': 'Q863908'}, 'P684', 'Q18298304']
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'Sorbs2']
[]
SYSTEM
1
Q18032960
(c(Q863908),P684,Q18298304)
[ANSWER]
[{'concept': 'Q863908'}, 'P684', 'Q18298304']
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { ?z property:P684 resource:Q18298304 . ?z rdf:type ontology:Q863908 }
SORBS2
1
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'Sorbs2']
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { ?z property:ortholog resource:Sorbs2 . ?z rdf:type ontology:nucleic_acid_sequence }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23231977 Q18298304
P688
Q181394
USER
Which nutrients do Sorbs2 or Cof family protein    spr1125 encode ?
OR((Q18298304,P688,c(Q181394)), (Q23231977,P688,c(Q181394)))
action filter_type
action union
action find
entity Q18298304
relation P688
action find
entity Q23231977
relation P688
type Q181394
{'OR': [['Q18298304', 'P688', {'concept': 'Q181394'}], ['Q23231977', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?u WHERE { { { resource:Q18298304 property:P688 ?u } UNION { resource:Q23231977 property:P688 ?u } } . ?u rdf:type ontology:Q181394 }
Cof family protein    spr1125 Sorbs2
action filter_type
action union
action find
entity Sorbs2
relation encodes
action find
entity Cof family protein    spr1125
relation encodes
type nutrient
{'OR': [['Sorbs2', 'encodes', {'concept': 'nutrient'}], ['Cof family protein    spr1125', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?u WHERE { { { resource:Sorbs2 property:encodes ?u } UNION { resource:Cof_family_protein____spr1125 property:encodes ?u } } . ?u rdf:type ontology:nutrient }
[]
nutrient
Q21990640 Q23495945
SYSTEM
Sorbin and SH3 domain-containing protein 2, Cof family protein    spr1125
Q21990640 Q23495945
OR((Q18298304,P688,c(Q181394)), (Q23231977,P688,c(Q181394)))
action filter_type
action union
action find
entity Q18298304
relation P688
action find
entity Q23231977
relation P688
type Q181394
[ANSWERS]
{'OR': [['Q18298304', 'P688', {'concept': 'Q181394'}], ['Q23231977', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?u WHERE { { { resource:Q18298304 property:P688 ?u } UNION { resource:Q23231977 property:P688 ?u } } . ?u rdf:type ontology:Q181394 }
Sorbin and SH3 domain-containing protein 2 Cof family protein    spr1125
Sorbs2 or Cof family protein spr1125 encode codes Sorbin and SH3 domain-containing protein 2 and Cof family protein spr1125
Sorbin and SH3 domain-containing protein 2 Cof family protein    spr1125
action filter_type
action union
action find
entity Sorbs2
relation encodes
action find
entity Cof family protein    spr1125
relation encodes
type nutrient
{'OR': [['Sorbs2', 'encodes', {'concept': 'nutrient'}], ['Cof family protein    spr1125', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?u WHERE { { { resource:Sorbs2 property:encodes ?u } UNION { resource:Cof_family_protein____spr1125 property:encodes ?u } } . ?u rdf:type ontology:nutrient }
[]
Simple Question (Coreferenced)
Simple Question|Mult. Entity
Q21990640 Q23495945
P702
Q863908
USER
Which nucleic acid sequences encode those nutrients ?
(Q21990640,P702,c(Q863908)) (Q23495945,P702,c(Q863908))
action filter_type
action find
entity prev_answer
relation P702
type Q863908
['Q21990640', 'P702', {'concept': 'Q863908'}] ['Q23495945', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?x WHERE { ?h property:P702 ?x . VALUES ( ?h ) { ( resource:Q21990640 ) ( resource:Q23495945 ) } . ?x rdf:type ontology:Q863908 }
Sorbin and SH3 domain-containing protein 2 Cof family protein    spr1125
action filter_type
action find
entity prev_answer
relation encoded by
type nucleic acid sequence
['Sorbin and SH3 domain-containing protein 2', 'encoded by', {'concept': 'nucleic acid sequence'}] ['Cof family protein    spr1125', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?x WHERE { ?h property:encoded_by ?x . VALUES ( ?h ) { ( resource:Sorbin_and_SH3_domain-containing_protein_2 ) ( resource:Cof_family_protein____spr1125 ) } . ?x rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18298304 Q23231977
SYSTEM
Sorbs2, Cof family protein    spr1125
Q18298304 Q23231977
(Q21990640,P702,c(Q863908)) (Q23495945,P702,c(Q863908))
action filter_type
action find
entity prev_answer
relation P702
type Q863908
[ANSWERS]
['Q21990640', 'P702', {'concept': 'Q863908'}] ['Q23495945', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?x WHERE { ?h property:P702 ?x . VALUES ( ?h ) { ( resource:Q21990640 ) ( resource:Q23495945 ) } . ?x rdf:type ontology:Q863908 }
Sorbs2 Cof family protein    spr1125
Sorbs2 and Cof family protein spr1125 encode those nutrients
Sorbs2 Cof family protein    spr1125
action filter_type
action find
entity prev_answer
relation encoded by
type nucleic acid sequence
['Sorbin and SH3 domain-containing protein 2', 'encoded by', {'concept': 'nucleic acid sequence'}] ['Cof family protein    spr1125', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?x WHERE { ?h property:encoded_by ?x . VALUES ( ?h ) { ( resource:Sorbin_and_SH3_domain-containing_protein_2 ) ( resource:Cof_family_protein____spr1125 ) } . ?x rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Mult. Entity
Q18298304 Q23231977
P702
Q181394
USER
Which nutrients are encoded by those nucleic acid sequences ?
(c(Q181394),P702,Q18298304) (c(Q181394),P702,Q23231977)
action filter_type
action find_reverse
entity prev_answer
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q18298304'] [{'concept': 'Q181394'}, 'P702', 'Q23231977']
SELECT DISTINCT ?e WHERE { VALUES ( ?v ) { ( resource:Q18298304 ) ( resource:Q23231977 ) } . ?e rdf:type ontology:Q181394 . ?e property:P702 ?v }
Sorbs2 Cof family protein    spr1125
action filter_type
action find_reverse
entity prev_answer
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'Sorbs2'] [{'concept': 'nutrient'}, 'encoded by', 'Cof family protein    spr1125']
SELECT DISTINCT ?e WHERE { VALUES ( ?v ) { ( resource:Sorbs2 ) ( resource:Cof_family_protein____spr1125 ) } . ?e rdf:type ontology:nutrient . ?e property:encoded_by ?v }
[]
nutrient
Q21990640 Q23495945
SYSTEM
Sorbin and SH3 domain-containing protein 2, Cof family protein    spr1125
Q21990640 Q23495945
(c(Q181394),P702,Q18298304) (c(Q181394),P702,Q23231977)
action filter_type
action find_reverse
entity prev_answer
relation P702
type Q181394
[ANSWERS]
[{'concept': 'Q181394'}, 'P702', 'Q18298304'] [{'concept': 'Q181394'}, 'P702', 'Q23231977']
SELECT DISTINCT ?e WHERE { VALUES ( ?v ) { ( resource:Q18298304 ) ( resource:Q23231977 ) } . ?e rdf:type ontology:Q181394 . ?e property:P702 ?v }
Sorbin and SH3 domain-containing protein 2 Cof family protein    spr1125
The Sorbin and SH3 domain-containing protein 2 and Cof family protein spr1125 are encoded by those nucleic acid sequences
Sorbin and SH3 domain-containing protein 2 Cof family protein    spr1125
action filter_type
action find_reverse
entity prev_answer
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'Sorbs2'] [{'concept': 'nutrient'}, 'encoded by', 'Cof family protein    spr1125']
SELECT DISTINCT ?e WHERE { VALUES ( ?v ) { ( resource:Sorbs2 ) ( resource:Cof_family_protein____spr1125 ) } . ?e rdf:type ontology:nutrient . ?e property:encoded_by ?v }
[]