Simple Question (Direct)
Simple Question
Q27762362
P680
Q44424
USER
Which chemical bond represents molecular function of anthranilate synthase component I    TM0142 ?
(Q27762362,P680,c(Q44424))
action filter_type
action find
entity Q27762362
relation P680
type Q44424
['Q27762362', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?k WHERE { resource:Q27762362 property:P680 ?k . ?k rdf:type ontology:Q44424 }
anthranilate synthase component I    TM0142
action filter_type
action find
entity anthranilate synthase component I    TM0142
relation molecular function
type chemical bond
['anthranilate synthase component I    TM0142', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?k WHERE { resource:anthranilate_synthase_component_I____TM0142 property:molecular_function ?k . ?k rdf:type ontology:chemical_bond }
[]
chemical bond
Q13667380
SYSTEM
metal ion binding
Q13667380
(Q27762362,P680,c(Q44424))
action filter_type
action find
entity Q27762362
relation P680
type Q44424
The [ANSWER] represents molecular function of anthranilate synthase component I TM0142
['Q27762362', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?k WHERE { resource:Q27762362 property:P680 ?k . ?k rdf:type ontology:Q44424 }
metal ion binding
The metal ion binding represents molecular function of anthranilate synthase component I TM0142
metal ion binding
action filter_type
action find
entity anthranilate synthase component I    TM0142
relation molecular function
type chemical bond
['anthranilate synthase component I    TM0142', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?k WHERE { resource:anthranilate_synthase_component_I____TM0142 property:molecular_function ?k . ?k rdf:type ontology:chemical_bond }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q27762362
P702
Q863908
USER
What is the gene that encodes anthranilate synthase component I    TM0142 ?
(Q27762362,P702,c(Q863908))
action filter_type
action find
entity Q27762362
relation P702
type Q863908
['Q27762362', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?f WHERE { resource:Q27762362 property:P702 ?f . ?f rdf:type ontology:Q863908 }
anthranilate synthase component I    TM0142
action filter_type
action find
entity anthranilate synthase component I    TM0142
relation encoded by
type nucleic acid sequence
['anthranilate synthase component I    TM0142', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?f WHERE { resource:anthranilate_synthase_component_I____TM0142 property:encoded_by ?f . ?f rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23300250
SYSTEM
anthranilate synthase component I    TM0142
Q23300250
(Q27762362,P702,c(Q863908))
action filter_type
action find
entity Q27762362
relation P702
type Q863908
The gene that encodes anthranilate synthase component I TM0142 is by anthranilate synthase component I TM0142
['Q27762362', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?f WHERE { resource:Q27762362 property:P702 ?f . ?f rdf:type ontology:Q863908 }
anthranilate synthase component I    TM0142
The gene that encodes anthranilate synthase component I TM0142 is by anthranilate synthase component I TM0142
anthranilate synthase component I    TM0142
action filter_type
action find
entity anthranilate synthase component I    TM0142
relation encoded by
type nucleic acid sequence
['anthranilate synthase component I    TM0142', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?f WHERE { resource:anthranilate_synthase_component_I____TM0142 property:encoded_by ?f . ?f rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23300250
P703
Q631147
USER
Where is that nucleic acid sequence found ?
(Q23300250,P703,c(Q631147))
action filter_type
action find
entity Q23300250
relation P703
type Q631147
['Q23300250', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?v WHERE { resource:Q23300250 property:P703 ?v . ?v rdf:type ontology:Q631147 }
anthranilate synthase component I    TM0142
action filter_type
action find
entity anthranilate synthase component I    TM0142
relation found in taxon
type infraspecific name
['anthranilate synthase component I    TM0142', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?v WHERE { resource:anthranilate_synthase_component_I____TM0142 property:found_in_taxon ?v . ?v rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102991
SYSTEM
Thermotoga maritima MSB8
Q21102991
(Q23300250,P703,c(Q631147))
action filter_type
action find
entity Q23300250
relation P703
type Q631147
That nucleic acid sequence is found in [ANSWER]
['Q23300250', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?v WHERE { resource:Q23300250 property:P703 ?v . ?v rdf:type ontology:Q631147 }
Thermotoga maritima MSB8
That nucleic acid sequence is found in Thermotoga maritima MSB8
Thermotoga maritima MSB8
action filter_type
action find
entity anthranilate synthase component I    TM0142
relation found in taxon
type infraspecific name
['anthranilate synthase component I    TM0142', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?v WHERE { resource:anthranilate_synthase_component_I____TM0142 property:found_in_taxon ?v . ?v rdf:type ontology:infraspecific_name }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation|Incomplete
Q23113067 Q23300250
P703
Q631147
USER
Or hypothetical protein    O3K_04415?
OR((Q23300250,P703,c(Q631147)), (Q23113067,P703,c(Q631147)))
action filter_type
action union
action find
entity Q23300250
relation P703
action find
entity Q23113067
relation P703
type Q631147
{'OR': [['Q23300250', 'P703', {'concept': 'Q631147'}], ['Q23113067', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?g WHERE { { { resource:Q23300250 property:P703 ?g } UNION { resource:Q23113067 property:P703 ?g } } . ?g rdf:type ontology:Q631147 }
hypothetical protein    O3K_04415 anthranilate synthase component I    TM0142
action filter_type
action union
action find
entity anthranilate synthase component I    TM0142
relation found in taxon
action find
entity hypothetical protein    O3K_04415
relation found in taxon
type infraspecific name
{'OR': [['anthranilate synthase component I    TM0142', 'found in taxon', {'concept': 'infraspecific name'}], ['hypothetical protein    O3K_04415', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?g WHERE { { { resource:anthranilate_synthase_component_I____TM0142 property:found_in_taxon ?g } UNION { resource:hypothetical_protein____O3K_04415 property:found_in_taxon ?g } } . ?g rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102991 Q21102937
SYSTEM
Thermotoga maritima MSB8, Escherichia coli O104:H4 str. 2011C-3493
Q21102991 Q21102937
OR((Q23300250,P703,c(Q631147)), (Q23113067,P703,c(Q631147)))
action filter_type
action union
action find
entity Q23300250
relation P703
action find
entity Q23113067
relation P703
type Q631147
[ANSWERS]
{'OR': [['Q23300250', 'P703', {'concept': 'Q631147'}], ['Q23113067', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?g WHERE { { { resource:Q23300250 property:P703 ?g } UNION { resource:Q23113067 property:P703 ?g } } . ?g rdf:type ontology:Q631147 }
Thermotoga maritima MSB8 Escherichia coli O104:H4 str. 2011C-3493
Thermotoga maritima MSB8 Escherichia coli O104:H4 str. 2011C-3493
action filter_type
action union
action find
entity anthranilate synthase component I    TM0142
relation found in taxon
action find
entity hypothetical protein    O3K_04415
relation found in taxon
type infraspecific name
{'OR': [['anthranilate synthase component I    TM0142', 'found in taxon', {'concept': 'infraspecific name'}], ['hypothetical protein    O3K_04415', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?g WHERE { { { resource:anthranilate_synthase_component_I____TM0142 property:found_in_taxon ?g } UNION { resource:hypothetical_protein____O3K_04415 property:found_in_taxon ?g } } . ?g rdf:type ontology:infraspecific_name }
[]
Clarification
Comparative|More/Less|Single entity type|Indirect
P703
Q631147 Q863908
USER
Which infraspecific names do around the same number of nucleic acid sequences belong to as that infraspecific name ?
(c(Q863908),P703,c(Q631147))
[{'concept': 'Q863908'}, 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?y WHERE { ?z property:P703 ?y . ?z rdf:type ontology:Q863908 . ?y rdf:type ontology:Q631147 }
[{'concept': 'nucleic acid sequence'}, 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?y WHERE { ?z property:found_in_taxon ?y . ?z rdf:type ontology:nucleic_acid_sequence . ?y rdf:type ontology:infraspecific_name }
[]
infraspecific name nucleic acid sequence
Comparative|More/Less|Single entity type|Clarification
Q21102937
SYSTEM
Did you mean Escherichia coli O104:H4 str. 2011C-3493 ?
(c(Q863908),P703,c(Q631147))
[ANSWER]
[{'concept': 'Q863908'}, 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?y WHERE { ?z property:P703 ?y . ?z rdf:type ontology:Q863908 . ?y rdf:type ontology:Q631147 }
Did you mean Escherichia coli O104:H4 str. 2011C-3493 ?
Escherichia coli O104:H4 str. 2011C-3493
[{'concept': 'nucleic acid sequence'}, 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?y WHERE { ?z property:found_in_taxon ?y . ?z rdf:type ontology:nucleic_acid_sequence . ?y rdf:type ontology:infraspecific_name }
[]
Comparative Reasoning (All)
USER
Yes
(c(Q863908),P703,c(Q631147))
[{'concept': 'Q863908'}, 'P703', {'concept': 'Q631147'}]
[{'concept': 'nucleic acid sequence'}, 'found in taxon', {'concept': 'infraspecific name'}]
[]
Q21102993 Q21102995 Q21102996
SYSTEM
Burkholderia mallei ATCC 23344, Burkholderia pseudomallei K96243, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Q21102993 Q21102995 Q21102996 Q21102997 Q27510868 Q21065229 Q21079489 Q21102943 Q21102942 Q21102941 Q21102940 Q21102947 Q21102946 Q21102920 Q21102930 Q21102987 Q21102924 Q21102927 Q21102986 Q21102928 Q21102918 Q21079490 Q21079491 Q21102984 Q21102973 Q21102944 Q21102954 Q21102955 Q21102950 Q21102953 Q21102976 Q23309229 Q21102975 Q21102972 Q21102970 Q21102971 Q21064863 Q21102931 Q21102937 Q21102934 Q21102938 Q21102939
(c(Q863908),P703,c(Q631147))
[ANSWERS] around the same number of nucleic acid sequences belong to as that infraspecific name
[{'concept': 'Q863908'}, 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?y WHERE { ?z property:P703 ?y . ?z rdf:type ontology:Q863908 . ?y rdf:type ontology:Q631147 }
Burkholderia mallei ATCC 23344 Burkholderia pseudomallei K96243 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Salmonella enterica subsp. enterica serovar Typhi str. CT18 Saccharomyces cerevisiae S288c Leptospira interrogans serovar Lai str. 56601 Pseudomonas putida KT2440 Yersinia pestis CO92 Yersinia enterocolitica subsp. enterocolitica 8081 Shigella flexneri 2a str. 301 Shigella dysenteriae Sd197 Vibrio parahaemolyticus RIMD 2210633 Vibrio fischeri ES114 Acinetobacter pittii PHEA-2 Escherichia coli O157:H7 str. Sakai Mycobacterium tuberculosis H37Rv Bordetella bronchiseptica 253 Enterobacter aerogenes KCTC 2190 Mycobacterium smegmatis str. MC2 155 Enterobacter cloacae subsp. cloacae ATCC 13047 Sinorhizobium meliloti 1021 Pseudomonas syringae pv. syringae B728a Xanthomonas campestris pv. campestris str. ATCC 33913 Mycobacterium bovis AF2122/97 Clostridium acetobutylicum ATCC 824 Aeromonas hydrophila subsp. hydrophila ATCC 7966 Rhodospirillum rubrum ATCC 11170 Chloroflexus aurantiacus J-10-fl Bacteroides fragilis YCH46 Rhodobacter sphaeroides 2.4.1 Peptoclostridium difficile 630 Sinorhizobium fredii NGR234 Clostridium botulinum A str. ATCC 3502 Bacillus thuringiensis serovar konkukian str. 97-27 Bacillus cereus ATCC 14579 Bacillus subtilis subsp. subtilis str. 168 Bordetella parapertussis Bpp5 Escherichia coli UMN026 Escherichia coli O104:H4 str. 2011C-3493 Escherichia coli O83:H1 str. NRG 857C Escherichia coli str. K-12 substr. MG1655 Klebsiella pneumoniae subsp. pneumoniae HS11286
Burkholderia mallei ATCC 23344, Burkholderia pseudomallei K96243 and Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 around the same number of nucleic acid sequences belong to as that infraspecific name
Burkholderia mallei ATCC 23344 Burkholderia pseudomallei K96243 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
[{'concept': 'nucleic acid sequence'}, 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?y WHERE { ?z property:found_in_taxon ?y . ?z rdf:type ontology:nucleic_acid_sequence . ?y rdf:type ontology:infraspecific_name }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q27762362
P682
Q2996394
USER
What is the biological process that anthranilate synthase component I    TM0142 is involved in ?
(Q27762362,P682,c(Q2996394))
action filter_type
action find
entity Q27762362
relation P682
type Q2996394
['Q27762362', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?h WHERE { resource:Q27762362 property:P682 ?h . ?h rdf:type ontology:Q2996394 }
anthranilate synthase component I    TM0142
action filter_type
action find
entity anthranilate synthase component I    TM0142
relation biological process
type biological process
['anthranilate synthase component I    TM0142', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?h WHERE { resource:anthranilate_synthase_component_I____TM0142 property:biological_process ?h . ?h rdf:type ontology:biological_process }
[]
biological process
Q14914008
SYSTEM
biosynthetic process
Q14914008
(Q27762362,P682,c(Q2996394))
action filter_type
action find
entity Q27762362
relation P682
type Q2996394
The biological process that anthranilate synthase component I TM 0142 is involved in is a [ANSWER]
['Q27762362', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?h WHERE { resource:Q27762362 property:P682 ?h . ?h rdf:type ontology:Q2996394 }
biosynthetic process
The biological process that anthranilate synthase component I TM 0142 is involved in is a biosynthetic process
biosynthetic process
action filter_type
action find
entity anthranilate synthase component I    TM0142
relation biological process
type biological process
['anthranilate synthase component I    TM0142', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?h WHERE { resource:anthranilate_synthase_component_I____TM0142 property:biological_process ?h . ?h rdf:type ontology:biological_process }
[]