Simple Question (Direct)
Simple Question
Q23515387
P703
Q631147
USER
Which infraspecific name is MFS transporter    BSU14030 found in ?
(Q23515387,P703,c(Q631147))
action filter_type
action find
entity Q23515387
relation P703
type Q631147
['Q23515387', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?i WHERE { resource:Q23515387 property:P703 ?i . ?i rdf:type ontology:Q631147 }
MFS transporter    BSU14030
action filter_type
action find
entity MFS transporter    BSU14030
relation found in taxon
type infraspecific name
['MFS transporter    BSU14030', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?i WHERE { resource:MFS_transporter____BSU14030 property:found_in_taxon ?i . ?i rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102971
SYSTEM
Bacillus subtilis subsp. subtilis str. 168
Q21102971
(Q23515387,P703,c(Q631147))
action filter_type
action find
entity Q23515387
relation P703
type Q631147
Which infraspecific name is MFS transporter BSU14030 found in
['Q23515387', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?i WHERE { resource:Q23515387 property:P703 ?i . ?i rdf:type ontology:Q631147 }
Bacillus subtilis subsp. subtilis str. 168
Which infraspecific name is MFS transporter BSU14030 found in
Bacillus subtilis subsp. subtilis str. 168
action filter_type
action find
entity MFS transporter    BSU14030
relation found in taxon
type infraspecific name
['MFS transporter    BSU14030', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?i WHERE { resource:MFS_transporter____BSU14030 property:found_in_taxon ?i . ?i rdf:type ontology:infraspecific_name }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q21102971 Q23250405
P703
Q863908
USER
Is VirG-like protein    STM0307 found in the taxon that infraspecific name ?
(Q23250405,P703,Q21102971)
action is_in
entity Q23250405
action find
entity Q21102971
relation P703
['Q23250405', 'P703', 'Q21102971']
ASK WHERE { resource:Q21102971 property:P703 resource:Q23250405 }
Bacillus subtilis subsp. subtilis str. 168 VirG-like protein    STM0307
action is_in
entity VirG-like protein    STM0307
action find
entity Bacillus subtilis subsp. subtilis str. 168
relation found in taxon
['VirG-like protein    STM0307', 'found in taxon', 'Bacillus subtilis subsp. subtilis str. 168']
ASK WHERE { resource:Bacillus_subtilis_subsp._subtilis_str._168 property:found_in_taxon resource:VirG-like_protein____STM0307 }
[]
nucleic acid sequence
SYSTEM
NO
(Q23250405,P703,Q21102971)
action is_in
entity Q23250405
action find
entity Q21102971
relation P703
[ANSWER]
['Q23250405', 'P703', 'Q21102971']
ASK WHERE { resource:Q21102971 property:P703 resource:Q23250405 }
No
action is_in
entity VirG-like protein    STM0307
action find
entity Bacillus subtilis subsp. subtilis str. 168
relation found in taxon
['VirG-like protein    STM0307', 'found in taxon', 'Bacillus subtilis subsp. subtilis str. 168']
ASK WHERE { resource:Bacillus_subtilis_subsp._subtilis_str._168 property:found_in_taxon resource:VirG-like_protein____STM0307 }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q23515387 Q23349946
P702
Q863908
USER
Does MFS transporter    BSU14030 gene encodes MFS transporter    BSU14030 ?
(Q23515387,P702,Q23349946)
action is_in
entity Q23349946
action find
entity Q23515387
relation P702
['Q23515387', 'P702', 'Q23349946']
ASK WHERE { resource:Q23515387 property:P702 resource:Q23349946 }
MFS transporter    BSU14030 MFS transporter    BSU14030
action is_in
entity MFS transporter    BSU14030
action find
entity MFS transporter    BSU14030
relation encoded by
['MFS transporter    BSU14030', 'encoded by', 'MFS transporter    BSU14030']
ASK WHERE { resource:MFS_transporter____BSU14030 property:encoded_by resource:MFS_transporter____BSU14030 }
[]
nucleic acid sequence
SYSTEM
YES
(Q23515387,P702,Q23349946)
action is_in
entity Q23349946
action find
entity Q23515387
relation P702
[ANSWER]
['Q23515387', 'P702', 'Q23349946']
ASK WHERE { resource:Q23515387 property:P702 resource:Q23349946 }
Yes
action is_in
entity MFS transporter    BSU14030
action find
entity MFS transporter    BSU14030
relation encoded by
['MFS transporter    BSU14030', 'encoded by', 'MFS transporter    BSU14030']
ASK WHERE { resource:MFS_transporter____BSU14030 property:encoded_by resource:MFS_transporter____BSU14030 }
[]
Quantitative Reasoning (All)
Quantitative|Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q181394 Q8386 Q79529
USER
Which nutrients do approximately 32 drugs and chemical substances contact with ?
(c(Q8386)|c(Q79529),P129,c(Q181394))
action approx
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
value 32
[[{'concept': 'Q8386'}, {'concept': 'Q79529'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?v WHERE { { SELECT DISTINCT ( COUNT ( ?y ) AS ?e ) ?v WHERE { { ?y rdf:type ontology:Q8386 . ?v rdf:type ontology:Q181394 . ?y property:P129 ?v } UNION { ?y property:P129 ?v . ?v rdf:type ontology:Q181394 . ?y rdf:type ontology:Q79529 } } GROUP BY ?v } . FILTER ( ?e = 32 ) }
action approx
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
value 32
[[{'concept': 'drug'}, {'concept': 'chemical substance'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?v WHERE { { SELECT DISTINCT ( COUNT ( ?y ) AS ?e ) ?v WHERE { { ?y rdf:type ontology:drug . ?v rdf:type ontology:nutrient . ?y property:physically_interacts_with ?v } UNION { ?y property:physically_interacts_with ?v . ?v rdf:type ontology:nutrient . ?y rdf:type ontology:chemical_substance } } GROUP BY ?v } . FILTER ( ?e = 32 ) }
[]
nutrient drug chemical substance
Q415364 Q5123372 Q21110872
SYSTEM
Prostaglandin G/H synthase 2, Mu-type opioid receptor, D(3) dopamine receptor
Q7050954 Q308856 Q4847910 Q287961 Q5123372 Q410142 Q287958 Q4847900 Q4734884 Q4734887 Q2844056 Q21115051 Q21115052 Q415364 Q21109355 Q4734894 Q21110872 Q4734892 Q4734891 Q8083989 Q5520260
(c(Q8386)|c(Q79529),P129,c(Q181394))
action approx
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
value 32
[ANSWERS]
[[{'concept': 'Q8386'}, {'concept': 'Q79529'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?v WHERE { { SELECT DISTINCT ( COUNT ( ?y ) AS ?e ) ?v WHERE { { ?y rdf:type ontology:Q8386 . ?v rdf:type ontology:Q181394 . ?y property:P129 ?v } UNION { ?y property:P129 ?v . ?v rdf:type ontology:Q181394 . ?y rdf:type ontology:Q79529 } } GROUP BY ?v } . FILTER ( ?e = 32 ) }
Sodium-dependent noradrenaline transporter D(4) dopamine receptor Muscarinic acetylcholine receptor M2 Beta-2 adrenergic receptor Mu-type opioid receptor Sodium-dependent serotonin transporter Beta-1 adrenergic receptor Muscarinic acetylcholine receptor M1 Alpha-1A adrenergic receptor Alpha-1D adrenergic receptor Muscarinic acetylcholine receptor M3 5-hydroxytryptamine receptor 1E 5-hydroxytryptamine receptor 1F Prostaglandin G/H synthase 2 5-hydroxytryptamine receptor 7 Alpha-2B adrenergic receptor D(3) dopamine receptor Alpha-2A adrenergic receptor Alpha-2C adrenergic receptor Kappa-type opioid receptor Gamma-aminobutyric acid receptor subunit alpha-1
Which nutrients approximately 32 drugs and chemical substances contact with
Prostaglandin G/H synthase 2 Mu-type opioid receptor D(3) dopamine receptor
action approx
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
value 32
[[{'concept': 'drug'}, {'concept': 'chemical substance'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?v WHERE { { SELECT DISTINCT ( COUNT ( ?y ) AS ?e ) ?v WHERE { { ?y rdf:type ontology:drug . ?v rdf:type ontology:nutrient . ?y property:physically_interacts_with ?v } UNION { ?y property:physically_interacts_with ?v . ?v rdf:type ontology:nutrient . ?y rdf:type ontology:chemical_substance } } GROUP BY ?v } . FILTER ( ?e = 32 ) }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23084653 Q23250405
P703
Q631147
USER
Which infraspecific names are VirG-like protein    STM0307 or TraF precursor    ECL_B075 a part of ?
OR((Q23250405,P703,c(Q631147)), (Q23084653,P703,c(Q631147)))
action filter_type
action union
action find
entity Q23250405
relation P703
action find
entity Q23084653
relation P703
type Q631147
{'OR': [['Q23250405', 'P703', {'concept': 'Q631147'}], ['Q23084653', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?o WHERE { ?o rdf:type ontology:Q631147 . { { resource:Q23250405 property:P703 ?o } UNION { resource:Q23084653 property:P703 ?o } } }
TraF precursor    ECL_B075 VirG-like protein    STM0307
action filter_type
action union
action find
entity VirG-like protein    STM0307
relation found in taxon
action find
entity TraF precursor    ECL_B075
relation found in taxon
type infraspecific name
{'OR': [['VirG-like protein    STM0307', 'found in taxon', {'concept': 'infraspecific name'}], ['TraF precursor    ECL_B075', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?o WHERE { ?o rdf:type ontology:infraspecific_name . { { resource:VirG-like_protein____STM0307 property:found_in_taxon ?o } UNION { resource:TraF_precursor____ECL_B075 property:found_in_taxon ?o } } }
[]
infraspecific name
Q21102928 Q21102996
SYSTEM
Enterobacter cloacae subsp. cloacae ATCC 13047, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Q21102928 Q21102996
OR((Q23250405,P703,c(Q631147)), (Q23084653,P703,c(Q631147)))
action filter_type
action union
action find
entity Q23250405
relation P703
action find
entity Q23084653
relation P703
type Q631147
[ANSWERS] are VirG-like protein STM0307 or TraF precursor ECL_B075 a part of
{'OR': [['Q23250405', 'P703', {'concept': 'Q631147'}], ['Q23084653', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?o WHERE { ?o rdf:type ontology:Q631147 . { { resource:Q23250405 property:P703 ?o } UNION { resource:Q23084653 property:P703 ?o } } }
Enterobacter cloacae subsp. cloacae ATCC 13047 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Enterobacter cloacae subsp. cloacae ATCC 13047 and Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 are VirG-like protein STM0307 or TraF precursor ECL_B075 a part of
Enterobacter cloacae subsp. cloacae ATCC 13047 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
action filter_type
action union
action find
entity VirG-like protein    STM0307
relation found in taxon
action find
entity TraF precursor    ECL_B075
relation found in taxon
type infraspecific name
{'OR': [['VirG-like protein    STM0307', 'found in taxon', {'concept': 'infraspecific name'}], ['TraF precursor    ECL_B075', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?o WHERE { ?o rdf:type ontology:infraspecific_name . { { resource:VirG-like_protein____STM0307 property:found_in_taxon ?o } UNION { resource:TraF_precursor____ECL_B075 property:found_in_taxon ?o } } }
[]
Logical Reasoning (All)
Logical|Intersection|Single_Relation
Q23562345 Q23250405
P703
Q631147
USER
Which infraspecific names are VirG-like protein    STM0307 and MFS family tranport protein    STM3887 a part of ?
AND((Q23250405,P703,c(Q631147)), (Q23562345,P703,c(Q631147)))
action filter_type
action intersection
action find
entity Q23250405
relation P703
action find
entity Q23562345
relation P703
type Q631147
{'AND': [['Q23250405', 'P703', {'concept': 'Q631147'}], ['Q23562345', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?g WHERE { resource:Q23250405 property:P703 ?g . resource:Q23562345 property:P703 ?g . ?g rdf:type ontology:Q631147 }
MFS family tranport protein    STM3887 VirG-like protein    STM0307
action filter_type
action intersection
action find
entity VirG-like protein    STM0307
relation found in taxon
action find
entity MFS family tranport protein    STM3887
relation found in taxon
type infraspecific name
{'AND': [['VirG-like protein    STM0307', 'found in taxon', {'concept': 'infraspecific name'}], ['MFS family tranport protein    STM3887', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?g WHERE { resource:VirG-like_protein____STM0307 property:found_in_taxon ?g . resource:MFS_family_tranport_protein____STM3887 property:found_in_taxon ?g . ?g rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102996
SYSTEM
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Q21102996
AND((Q23250405,P703,c(Q631147)), (Q23562345,P703,c(Q631147)))
action filter_type
action intersection
action find
entity Q23250405
relation P703
action find
entity Q23562345
relation P703
type Q631147
[ANSWER]
{'AND': [['Q23250405', 'P703', {'concept': 'Q631147'}], ['Q23562345', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?g WHERE { resource:Q23250405 property:P703 ?g . resource:Q23562345 property:P703 ?g . ?g rdf:type ontology:Q631147 }
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
action filter_type
action intersection
action find
entity VirG-like protein    STM0307
relation found in taxon
action find
entity MFS family tranport protein    STM3887
relation found in taxon
type infraspecific name
{'AND': [['VirG-like protein    STM0307', 'found in taxon', {'concept': 'infraspecific name'}], ['MFS family tranport protein    STM3887', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?g WHERE { resource:VirG-like_protein____STM0307 property:found_in_taxon ?g . resource:MFS_family_tranport_protein____STM3887 property:found_in_taxon ?g . ?g rdf:type ontology:infraspecific_name }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q415364
P688
Q863908
USER
Which nucleic acid sequence encodes Prostaglandin G/H synthase 2 ?
(c(Q863908),P688,Q415364)
action filter_type
action find_reverse
entity Q415364
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q415364']
SELECT DISTINCT ?q WHERE { ?q rdf:type ontology:Q863908 . ?q property:P688 resource:Q415364 }
Prostaglandin G/H synthase 2
action filter_type
action find_reverse
entity Prostaglandin G/H synthase 2
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Prostaglandin G/H synthase 2']
SELECT DISTINCT ?q WHERE { ?q rdf:type ontology:nucleic_acid_sequence . ?q property:encodes resource:Prostaglandin_G/H_synthase_2 }
[]
nucleic acid sequence
Q20970156
SYSTEM
PTGS2
Q20970156
(c(Q863908),P688,Q415364)
action filter_type
action find_reverse
entity Q415364
relation P688
type Q863908
[ANSWER] encodes Prostaglandin G/H synthase 2
[{'concept': 'Q863908'}, 'P688', 'Q415364']
SELECT DISTINCT ?q WHERE { ?q rdf:type ontology:Q863908 . ?q property:P688 resource:Q415364 }
PTGS2
PTGS2 encodes Prostaglandin G/H synthase 2
PTGS2
action filter_type
action find_reverse
entity Prostaglandin G/H synthase 2
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Prostaglandin G/H synthase 2']
SELECT DISTINCT ?q WHERE { ?q rdf:type ontology:nucleic_acid_sequence . ?q property:encodes resource:Prostaglandin_G/H_synthase_2 }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q415364
P681
Q15989253
USER
Which parts are components of that nutrient ?
(Q20970156,P681,c(Q15989253))
action filter_type
action find
entity Q415364
relation P681
type Q15989253
['Q20970156', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?s WHERE { resource:Q415364 property:P681 ?s . ?s rdf:type ontology:Q15989253 }
Prostaglandin G/H synthase 2
action filter_type
action find
entity Prostaglandin G/H synthase 2
relation cell component
type part
['PTGS2', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?s WHERE { resource:Prostaglandin_G/H_synthase_2 property:cell_component ?s . ?s rdf:type ontology:part }
[]
part
Q79899 Q40260 Q14349455
SYSTEM
cytoplasm, nucleus, membrane
Q79899 Q40260 Q14349455
(Q20970156,P681,c(Q15989253))
action filter_type
action find
entity Q415364
relation P681
type Q15989253
[ANSWERS] are components of that nutrient
['Q20970156', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?s WHERE { resource:Q415364 property:P681 ?s . ?s rdf:type ontology:Q15989253 }
cytoplasm nucleus membrane
Cytoplasm, nucleus and membrane are components of that nutrient
cytoplasm nucleus membrane
action filter_type
action find
entity Prostaglandin G/H synthase 2
relation cell component
type part
['PTGS2', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?s WHERE { resource:Prostaglandin_G/H_synthase_2 property:cell_component ?s . ?s rdf:type ontology:part }
[]
Logical Reasoning (All)
Logical|Intersection|Single_Relation|Incomplete
Q23507949 Q415364
P681
Q15989253
USER
And also hypothetical protein    L173151
AND((Q415364,P681,c(Q15989253)), (Q23507949,P681,c(Q15989253)))
action filter_type
action intersection
action find
entity Q415364
relation P681
action find
entity Q23507949
relation P681
type Q15989253
{'AND': [['Q415364', 'P681', {'concept': 'Q15989253'}], ['Q23507949', 'P681', {'concept': 'Q15989253'}]]}
SELECT DISTINCT ?n WHERE { ?n rdf:type ontology:Q15989253 . resource:Q415364 property:P681 ?n . resource:Q23507949 property:P681 ?n }
hypothetical protein    L173151 Prostaglandin G/H synthase 2
action filter_type
action intersection
action find
entity Prostaglandin G/H synthase 2
relation cell component
action find
entity hypothetical protein    L173151
relation cell component
type part
{'AND': [['Prostaglandin G/H synthase 2', 'cell component', {'concept': 'part'}], ['hypothetical protein    L173151', 'cell component', {'concept': 'part'}]]}
SELECT DISTINCT ?n WHERE { ?n rdf:type ontology:part . resource:Prostaglandin_G/H_synthase_2 property:cell_component ?n . resource:hypothetical_protein____L173151 property:cell_component ?n }
[]
part
Q79899
SYSTEM
cytoplasm
Q79899
AND((Q415364,P681,c(Q15989253)), (Q23507949,P681,c(Q15989253)))
action filter_type
action intersection
action find
entity Q415364
relation P681
action find
entity Q23507949
relation P681
type Q15989253
[ANSWER]
{'AND': [['Q415364', 'P681', {'concept': 'Q15989253'}], ['Q23507949', 'P681', {'concept': 'Q15989253'}]]}
SELECT DISTINCT ?n WHERE { ?n rdf:type ontology:Q15989253 . resource:Q415364 property:P681 ?n . resource:Q23507949 property:P681 ?n }
cytoplasm
cytoplasm
action filter_type
action intersection
action find
entity Prostaglandin G/H synthase 2
relation cell component
action find
entity hypothetical protein    L173151
relation cell component
type part
{'AND': [['Prostaglandin G/H synthase 2', 'cell component', {'concept': 'part'}], ['hypothetical protein    L173151', 'cell component', {'concept': 'part'}]]}
SELECT DISTINCT ?n WHERE { ?n rdf:type ontology:part . resource:Prostaglandin_G/H_synthase_2 property:cell_component ?n . resource:hypothetical_protein____L173151 property:cell_component ?n }
[]