Simple Question (Direct)
Simple Question
Q27739986
P702
Q863908
USER
Which gene encodes 30S ribosomal protein S20    ML0604 ?
(Q27739986,P702,c(Q863908))
action filter_type
action find
entity Q27739986
relation P702
type Q863908
['Q27739986', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?a WHERE { resource:Q27739986 property:P702 ?a . ?a rdf:type ontology:Q863908 }
30S ribosomal protein S20    ML0604
action filter_type
action find
entity 30S ribosomal protein S20    ML0604
relation encoded by
type nucleic acid sequence
['30S ribosomal protein S20    ML0604', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?a WHERE { resource:30S_ribosomal_protein_S20____ML0604 property:encoded_by ?a . ?a rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23262704
SYSTEM
30S ribosomal protein S20    ML0604
Q23262704
(Q27739986,P702,c(Q863908))
action filter_type
action find
entity Q27739986
relation P702
type Q863908
30S ribosomal protein S20 ML0604 encodes 30S ribosomal protein S20 ML0604
['Q27739986', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?a WHERE { resource:Q27739986 property:P702 ?a . ?a rdf:type ontology:Q863908 }
30S ribosomal protein S20    ML0604
30S ribosomal protein S20 ML0604 encodes 30S ribosomal protein S20 ML0604
30S ribosomal protein S20    ML0604
action filter_type
action find
entity 30S ribosomal protein S20    ML0604
relation encoded by
type nucleic acid sequence
['30S ribosomal protein S20    ML0604', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?a WHERE { resource:30S_ribosomal_protein_S20____ML0604 property:encoded_by ?a . ?a rdf:type ontology:nucleic_acid_sequence }
[]
Logical Reasoning (All)
Logical|Intersection|Single_Relation
Q27739444 Q27739986
P703
Q631147
USER
Which infraspecific names are 30S ribosomal protein S20    ML0604 and RNA methyltransferase    ML2485 a part of ?
AND((Q27739986,P703,c(Q631147)), (Q27739444,P703,c(Q631147)))
action filter_type
action intersection
action find
entity Q27739986
relation P703
action find
entity Q27739444
relation P703
type Q631147
{'AND': [['Q27739986', 'P703', {'concept': 'Q631147'}], ['Q27739444', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?p WHERE { ?p rdf:type ontology:Q631147 . resource:Q27739986 property:P703 ?p . resource:Q27739444 property:P703 ?p }
RNA methyltransferase    ML2485 30S ribosomal protein S20    ML0604
action filter_type
action intersection
action find
entity 30S ribosomal protein S20    ML0604
relation found in taxon
action find
entity RNA methyltransferase    ML2485
relation found in taxon
type infraspecific name
{'AND': [['30S ribosomal protein S20    ML0604', 'found in taxon', {'concept': 'infraspecific name'}], ['RNA methyltransferase    ML2485', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?p WHERE { ?p rdf:type ontology:infraspecific_name . resource:30S_ribosomal_protein_S20____ML0604 property:found_in_taxon ?p . resource:RNA_methyltransferase____ML2485 property:found_in_taxon ?p }
[]
infraspecific name
Q21102985
SYSTEM
Mycobacterium leprae TN
Q21102985
AND((Q27739986,P703,c(Q631147)), (Q27739444,P703,c(Q631147)))
action filter_type
action intersection
action find
entity Q27739986
relation P703
action find
entity Q27739444
relation P703
type Q631147
[ANSWER] is 30S ribosomal protein S20 ML0604 and RNA methyltransferase ML2485 a part of
{'AND': [['Q27739986', 'P703', {'concept': 'Q631147'}], ['Q27739444', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?p WHERE { ?p rdf:type ontology:Q631147 . resource:Q27739986 property:P703 ?p . resource:Q27739444 property:P703 ?p }
Mycobacterium leprae TN
Mycobacterium leprae TN is 30S ribosomal protein S20 ML0604 and RNA methyltransferase ML2485 a part of
Mycobacterium leprae TN
action filter_type
action intersection
action find
entity 30S ribosomal protein S20    ML0604
relation found in taxon
action find
entity RNA methyltransferase    ML2485
relation found in taxon
type infraspecific name
{'AND': [['30S ribosomal protein S20    ML0604', 'found in taxon', {'concept': 'infraspecific name'}], ['RNA methyltransferase    ML2485', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?p WHERE { ?p rdf:type ontology:infraspecific_name . resource:30S_ribosomal_protein_S20____ML0604 property:found_in_taxon ?p . resource:RNA_methyltransferase____ML2485 property:found_in_taxon ?p }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q27739444
P682
Q2996394
USER
What is the biological process that RNA methyltransferase    ML2485 is involved in ?
(Q21102985,P682,c(Q2996394))
action filter_type
action find
entity Q27739444
relation P682
type Q2996394
['Q21102985', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?q WHERE { resource:Q27739444 property:P682 ?q . ?q rdf:type ontology:Q2996394 }
RNA methyltransferase    ML2485
action filter_type
action find
entity RNA methyltransferase    ML2485
relation biological process
type biological process
['Mycobacterium leprae TN', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?q WHERE { resource:RNA_methyltransferase____ML2485 property:biological_process ?q . ?q rdf:type ontology:biological_process }
[]
biological process
Q518328
SYSTEM
methylation
Q518328
(Q21102985,P682,c(Q2996394))
action filter_type
action find
entity Q27739444
relation P682
type Q2996394
The biological process that RNA methyltransferase ML2485 is involved in is RNA [ANSWER]
['Q21102985', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?q WHERE { resource:Q27739444 property:P682 ?q . ?q rdf:type ontology:Q2996394 }
methylation
The biological process that RNA methyltransferase ML2485 is involved in is RNA methylation
methylation
action filter_type
action find
entity RNA methyltransferase    ML2485
relation biological process
type biological process
['Mycobacterium leprae TN', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?q WHERE { resource:RNA_methyltransferase____ML2485 property:biological_process ?q . ?q rdf:type ontology:biological_process }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q27739986
P681
Q5058355
USER
What is a component of 30S ribosomal protein S20    ML0604 ?
(Q27739986,P681,c(Q5058355))
action filter_type
action find
entity Q27739986
relation P681
type Q5058355
['Q27739986', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:Q5058355 . resource:Q27739986 property:P681 ?b }
30S ribosomal protein S20    ML0604
action filter_type
action find
entity 30S ribosomal protein S20    ML0604
relation cell component
type cellular component
['30S ribosomal protein S20    ML0604', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:cellular_component . resource:30S_ribosomal_protein_S20____ML0604 property:cell_component ?b }
[]
cellular component
Q3824358
SYSTEM
intracellular
Q3824358
(Q27739986,P681,c(Q5058355))
action filter_type
action find
entity Q27739986
relation P681
type Q5058355
A component of 30S ribosomal protein S20 ML0604 is an [ANSWER]
['Q27739986', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:Q5058355 . resource:Q27739986 property:P681 ?b }
intracellular
A component of 30S ribosomal protein S20 ML0604 is an intracellular
intracellular
action filter_type
action find
entity 30S ribosomal protein S20    ML0604
relation cell component
type cellular component
['30S ribosomal protein S20    ML0604', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:cellular_component . resource:30S_ribosomal_protein_S20____ML0604 property:cell_component ?b }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q3824358
P361
Q5058355
USER
What is that one a portion of ?
(Q3824358,P361,c(Q5058355))
action filter_type
action find
entity Q3824358
relation P361
type Q5058355
['Q3824358', 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ?y WHERE { resource:Q3824358 property:P361 ?y . ?y rdf:type ontology:Q5058355 }
intracellular
action filter_type
action find
entity intracellular
relation part of
type cellular component
['intracellular', 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ?y WHERE { resource:intracellular property:part_of ?y . ?y rdf:type ontology:cellular_component }
[]
cellular component
Q22330431
SYSTEM
unencapsulated part of cell
Q22330431
(Q3824358,P361,c(Q5058355))
action filter_type
action find
entity Q3824358
relation P361
type Q5058355
That one a portion of is an [ANSWER]
['Q3824358', 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ?y WHERE { resource:Q3824358 property:P361 ?y . ?y rdf:type ontology:Q5058355 }
unencapsulated part of cell
That one a portion of is an unencapsulated part of cell
unencapsulated part of cell
action filter_type
action find
entity intracellular
relation part of
type cellular component
['intracellular', 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ?y WHERE { resource:intracellular property:part_of ?y . ?y rdf:type ontology:cellular_component }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q22326842
Q5058355
USER
And also tell me about RAD6-UBR2 ubiquitin ligase complex?
(Q22326842,P361,c(Q5058355))
action filter_type
action find
entity Q22326842
relation P361
type Q5058355
['Q22326842', 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ?d WHERE { resource:Q22326842 property:P361 ?d . ?d rdf:type ontology:Q5058355 }
RAD6-UBR2 ubiquitin ligase complex
action filter_type
action find
entity RAD6-UBR2 ubiquitin ligase complex
relation part of
type cellular component
['RAD6-UBR2 ubiquitin ligase complex', 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ?d WHERE { resource:RAD6-UBR2_ubiquitin_ligase_complex property:part_of ?d . ?d rdf:type ontology:cellular_component }
[]
cellular component
Q3824358
SYSTEM
intracellular
Q3824358
(Q22326842,P361,c(Q5058355))
action filter_type
action find
entity Q22326842
relation P361
type Q5058355
[ANSWER]
['Q22326842', 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ?d WHERE { resource:Q22326842 property:P361 ?d . ?d rdf:type ontology:Q5058355 }
intracellular
intracellular
action filter_type
action find
entity RAD6-UBR2 ubiquitin ligase complex
relation part of
type cellular component
['RAD6-UBR2 ubiquitin ligase complex', 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ?d WHERE { resource:RAD6-UBR2_ubiquitin_ligase_complex property:part_of ?d . ?d rdf:type ontology:cellular_component }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Mult. entity type|Indirect
P361
Q5058355 Q15989253 Q5058355
USER
How many cellular components are around the same number of parts and cellular components a component of as that cellular component ?
(c(Q15989253)|c(Q5058355),P361,c(Q5058355))
action count
action approx
action union
action find_reverse_tuple_counts
relation P361
type Q5058355
type Q15989253
action find_reverse_tuple_counts
relation P361
type Q5058355
type Q5058355
action count
action filter_multi_types
action find_reverse
entity Q3824358
relation P361
type Q15989253
type Q5058355
[[{'concept': 'Q15989253'}, {'concept': 'Q5058355'}], 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ( COUNT ( ?v ) AS ?g ) WHERE { { SELECT DISTINCT ( COUNT ( ?r ) AS ?y ) ?v WHERE { { ?r property:P361 ?v . ?v rdf:type ontology:Q5058355 . ?r rdf:type ontology:Q15989253 } UNION { ?r property:P361 ?v . ?v rdf:type ontology:Q5058355 . ?r rdf:type ontology:Q5058355 } } GROUP BY ?v } . { SELECT DISTINCT ( COUNT ( ?i ) AS ?q ) WHERE { ?i property:P361 resource:Q3824358 . { { ?i rdf:type ontology:Q5058355 } UNION { ?i rdf:type ontology:Q15989253 } } } } . FILTER ( ?y = ?q ) }
action count
action approx
action union
action find_reverse_tuple_counts
relation part of
type cellular component
type part
action find_reverse_tuple_counts
relation part of
type cellular component
type cellular component
action count
action filter_multi_types
action find_reverse
entity intracellular
relation part of
type part
type cellular component
[[{'concept': 'part'}, {'concept': 'cellular component'}], 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ( COUNT ( ?v ) AS ?g ) WHERE { { SELECT DISTINCT ( COUNT ( ?r ) AS ?y ) ?v WHERE { { ?r property:part_of ?v . ?v rdf:type ontology:cellular_component . ?r rdf:type ontology:part } UNION { ?r property:part_of ?v . ?v rdf:type ontology:cellular_component . ?r rdf:type ontology:cellular_component } } GROUP BY ?v } . { SELECT DISTINCT ( COUNT ( ?i ) AS ?q ) WHERE { ?i property:part_of resource:intracellular . { { ?i rdf:type ontology:cellular_component } UNION { ?i rdf:type ontology:part } } } } . FILTER ( ?y = ?q ) }
[]
cellular component part cellular component
SYSTEM
83
Q22329450 Q15320191 Q14912978 Q14864171 Q14876131 Q14878067 Q1604780 Q22327994 Q22327622 Q14860843 Q22327686 Q22327683 Q22330482 Q671136 Q22326188 Q22330431 Q189094 Q24576572 Q3824358 Q22329021 Q14864391 Q14864390 Q22328085 Q21095183 Q14905221 Q21199358 Q22327411 Q22327418 Q22329159 Q22329397 Q14864382 Q14353100 Q22327884 Q21423046 Q47263 Q22327652 Q22329848 Q180436 Q22329846 Q22329160 Q24570682 Q22330051 Q22327498 Q14911512 Q14819352 Q22327494 Q22327889 Q14762605 Q14864266 Q21750262 Q21198990 Q776995 Q22329401 Q24570673 Q14349538 Q22328884 Q22329076 Q22330231 Q5419646 Q21126899 Q22325459 Q22327714 Q22327805 Q21107481 Q22327505 Q21102478 Q22327502 Q22327500 Q138639 Q22329104 Q21095308 Q14864857 Q1065756 Q79927 Q180951 Q14864520 Q29548 Q22328105 Q14860546 Q14860540 Q14864866 Q6414172 Q193825
(c(Q15989253)|c(Q5058355),P361,c(Q5058355))
action count
action approx
action union
action find_reverse_tuple_counts
relation P361
type Q5058355
type Q15989253
action find_reverse_tuple_counts
relation P361
type Q5058355
type Q5058355
action count
action filter_multi_types
action find_reverse
entity Q3824358
relation P361
type Q15989253
type Q5058355
[ANSWER]
[[{'concept': 'Q15989253'}, {'concept': 'Q5058355'}], 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ( COUNT ( ?v ) AS ?g ) WHERE { { SELECT DISTINCT ( COUNT ( ?r ) AS ?y ) ?v WHERE { { ?r property:P361 ?v . ?v rdf:type ontology:Q5058355 . ?r rdf:type ontology:Q15989253 } UNION { ?r property:P361 ?v . ?v rdf:type ontology:Q5058355 . ?r rdf:type ontology:Q5058355 } } GROUP BY ?v } . { SELECT DISTINCT ( COUNT ( ?i ) AS ?q ) WHERE { ?i property:P361 resource:Q3824358 . { { ?i rdf:type ontology:Q5058355 } UNION { ?i rdf:type ontology:Q15989253 } } } } . FILTER ( ?y = ?q ) }
lateral part of cell synaptic cleft mitochondrial nucleoid cell periphery compact myelin organelle membrane hemidesmosome rhoptry side of membrane nuclear outer membrane prospore membrane eisosome ventral disc supernumerary microtubule array synaptic vesicle aster unencapsulated part of cell cell surface presynaptic endosome membrane intracellular apical complex intracellular organelle synaptic vesicle membrane external encapsulating structure dendritic spine head symbiont-containing vacuole membrane bacterial nucleoid extracellular space of host host ventral disc microtubule array cluster of actin-based cell projections presynaptic active zone cell projection cellular bud membrane-bounded organelle chloroplast whole membrane icosahedral viral capsid, collar cilium icosahedral viral capsid, neck ventral disc overlap zone spine apparatus membrane dinoflagellate hypocone postsynaptic endocytic zone stereocilium respiratory chain postsynaptic endosome cell trailing edge midbody cell-substrate junction cell division site periplasmic space neuromuscular junction pellicle postsynaptic endosome membrane apical part of cell organellar ribosome plastid nucleoid dinoflagellate epicone excitatory synapse cell tip sperm individualization complex coated membrane photosynthetic membrane site of polarized growth presynaptic endosome other organism cell presynaptic active zone cytoplasmic component presynaptic endocytic zone peroxisome germ tube retromer complex cell leading edge melanosome endoplasmic reticulum chromatin extrinsic component of membrane plasma membrane cell septum basal part of cell clathrin-coated pit cell body kinocilium extracellular matrix
83
action count
action approx
action union
action find_reverse_tuple_counts
relation part of
type cellular component
type part
action find_reverse_tuple_counts
relation part of
type cellular component
type cellular component
action count
action filter_multi_types
action find_reverse
entity intracellular
relation part of
type part
type cellular component
[[{'concept': 'part'}, {'concept': 'cellular component'}], 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ( COUNT ( ?v ) AS ?g ) WHERE { { SELECT DISTINCT ( COUNT ( ?r ) AS ?y ) ?v WHERE { { ?r property:part_of ?v . ?v rdf:type ontology:cellular_component . ?r rdf:type ontology:part } UNION { ?r property:part_of ?v . ?v rdf:type ontology:cellular_component . ?r rdf:type ontology:cellular_component } } GROUP BY ?v } . { SELECT DISTINCT ( COUNT ( ?i ) AS ?q ) WHERE { ?i property:part_of resource:intracellular . { { ?i rdf:type ontology:cellular_component } UNION { ?i rdf:type ontology:part } } } } . FILTER ( ?y = ?q ) }
[]