Simple Question (Direct)
Simple Question
Q23627868
P682
Q1057
USER
Which metabolic process is DinG family ATP-dependent helicase    PSPTO_4120 involved in ?
(Q23627868,P682,c(Q1057))
action filter_type
action find
entity Q23627868
relation P682
type Q1057
['Q23627868', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?l WHERE { resource:Q23627868 property:P682 ?l . ?l rdf:type ontology:Q1057 }
DinG family ATP-dependent helicase    PSPTO_4120
action filter_type
action find
entity DinG family ATP-dependent helicase    PSPTO_4120
relation biological process
type metabolic process
['DinG family ATP-dependent helicase    PSPTO_4120', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?l WHERE { resource:DinG_family_ATP-dependent_helicase____PSPTO_4120 property:biological_process ?l . ?l rdf:type ontology:metabolic_process }
[]
metabolic process
Q14880758
SYSTEM
nucleobase-containing compound metabolic process
Q14880758
(Q23627868,P682,c(Q1057))
action filter_type
action find
entity Q23627868
relation P682
type Q1057
The [ANSWER] is DinG family ATP-dependent helicase PSPTO_4120 involved in
['Q23627868', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?l WHERE { resource:Q23627868 property:P682 ?l . ?l rdf:type ontology:Q1057 }
nucleobase-containing compound metabolic process
The nucleobase-containing compound metabolic process is DinG family ATP-dependent helicase PSPTO_4120 involved in
nucleobase-containing compound metabolic process
action filter_type
action find
entity DinG family ATP-dependent helicase    PSPTO_4120
relation biological process
type metabolic process
['DinG family ATP-dependent helicase    PSPTO_4120', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?l WHERE { resource:DinG_family_ATP-dependent_helicase____PSPTO_4120 property:biological_process ?l . ?l rdf:type ontology:metabolic_process }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23627868
P703
Q16521
USER
Where is that nutrient found ?
(Q14880758,P703,c(Q16521))
action filter_type
action find
entity Q23627868
relation P703
type Q16521
['Q14880758', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?x WHERE { resource:Q23627868 property:P703 ?x . ?x rdf:type ontology:Q16521 }
DinG family ATP-dependent helicase    PSPTO_4120
action filter_type
action find
entity DinG family ATP-dependent helicase    PSPTO_4120
relation found in taxon
type taxon
['nucleobase-containing compound metabolic process', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?x WHERE { resource:DinG_family_ATP-dependent_helicase____PSPTO_4120 property:found_in_taxon ?x . ?x rdf:type ontology:taxon }
[]
taxon
Q21399079
SYSTEM
Pseudomonas syringae pv. tomato str. DC3000
Q21399079
(Q14880758,P703,c(Q16521))
action filter_type
action find
entity Q23627868
relation P703
type Q16521
That nutrient is found in [ANSWER]
['Q14880758', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?x WHERE { resource:Q23627868 property:P703 ?x . ?x rdf:type ontology:Q16521 }
Pseudomonas syringae pv. tomato str. DC3000
That nutrient is found in Pseudomonas syringae pv. tomato str. DC3000
Pseudomonas syringae pv. tomato str. DC3000
action filter_type
action find
entity DinG family ATP-dependent helicase    PSPTO_4120
relation found in taxon
type taxon
['nucleobase-containing compound metabolic process', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?x WHERE { resource:DinG_family_ATP-dependent_helicase____PSPTO_4120 property:found_in_taxon ?x . ?x rdf:type ontology:taxon }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q21604485
Q16521
USER
And how about hypothetical protein    BB_R44?
(Q21604485,P703,c(Q16521))
action filter_type
action find
entity Q21604485
relation P703
type Q16521
['Q21604485', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?n WHERE { resource:Q21604485 property:P703 ?n . ?n rdf:type ontology:Q16521 }
hypothetical protein    BB_R44
action filter_type
action find
entity hypothetical protein    BB_R44
relation found in taxon
type taxon
['hypothetical protein    BB_R44', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?n WHERE { resource:hypothetical_protein____BB_R44 property:found_in_taxon ?n . ?n rdf:type ontology:taxon }
[]
taxon
Q21065227
SYSTEM
Borrelia burgdorferi B31
Q21065227
(Q21604485,P703,c(Q16521))
action filter_type
action find
entity Q21604485
relation P703
type Q16521
[ANSWER]
['Q21604485', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?n WHERE { resource:Q21604485 property:P703 ?n . ?n rdf:type ontology:Q16521 }
Borrelia burgdorferi B31
Borrelia burgdorferi B31
action filter_type
action find
entity hypothetical protein    BB_R44
relation found in taxon
type taxon
['hypothetical protein    BB_R44', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?n WHERE { resource:hypothetical_protein____BB_R44 property:found_in_taxon ?n . ?n rdf:type ontology:taxon }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21604485
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(c(Q863908),P688,Q21065227)
action filter_type
action find_reverse
entity Q21604485
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q21065227']
SELECT DISTINCT ?h WHERE { ?h property:P688 resource:Q21604485 . ?h rdf:type ontology:Q863908 }
hypothetical protein    BB_R44
action filter_type
action find_reverse
entity hypothetical protein    BB_R44
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Borrelia burgdorferi B31']
SELECT DISTINCT ?h WHERE { ?h property:encodes resource:hypothetical_protein____BB_R44 . ?h rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q21602718
SYSTEM
hypothetical protein BB_R44
Q21602718
(c(Q863908),P688,Q21065227)
action filter_type
action find_reverse
entity Q21604485
relation P688
type Q863908
Hypothetical protein BB R44 encodes that nutrient
[{'concept': 'Q863908'}, 'P688', 'Q21065227']
SELECT DISTINCT ?h WHERE { ?h property:P688 resource:Q21604485 . ?h rdf:type ontology:Q863908 }
hypothetical protein BB_R44
Hypothetical protein BB R44 encodes that nutrient
hypothetical protein BB_R44
action filter_type
action find_reverse
entity hypothetical protein    BB_R44
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Borrelia burgdorferi B31']
SELECT DISTINCT ?h WHERE { ?h property:encodes resource:hypothetical_protein____BB_R44 . ?h rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21604485
P702
Q863908
USER
Which gene encodes hypothetical protein    BB_R44 ?
(Q21604485,P702,c(Q863908))
action filter_type
action find
entity Q21604485
relation P702
type Q863908
['Q21604485', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?u WHERE { resource:Q21604485 property:P702 ?u . ?u rdf:type ontology:Q863908 }
hypothetical protein    BB_R44
action filter_type
action find
entity hypothetical protein    BB_R44
relation encoded by
type nucleic acid sequence
['hypothetical protein    BB_R44', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?u WHERE { resource:hypothetical_protein____BB_R44 property:encoded_by ?u . ?u rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q21602718
SYSTEM
hypothetical protein BB_R44
Q21602718
(Q21604485,P702,c(Q863908))
action filter_type
action find
entity Q21604485
relation P702
type Q863908
Hypothetical protein BB R44 encodes [ANSWER]
['Q21604485', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?u WHERE { resource:Q21604485 property:P702 ?u . ?u rdf:type ontology:Q863908 }
hypothetical protein BB_R44
Hypothetical protein BB R44 encodes hypothetical protein BB_R44
hypothetical protein BB_R44
action filter_type
action find
entity hypothetical protein    BB_R44
relation encoded by
type nucleic acid sequence
['hypothetical protein    BB_R44', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?u WHERE { resource:hypothetical_protein____BB_R44 property:encoded_by ?u . ?u rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|3 entities, all direct, 2 are query entities
Q21602718 Q27755897 Q21604485
P688
Q181394
USER
Does hypothetical protein BB_R44 encode NAD-binding protein    SCO2824 and hypothetical protein    BB_R44 ?
(Q21602718,P688,Q27755897) (Q21602718,P688,Q21604485)
action is_in
entity Q21602718
action intersection
action find_reverse
entity Q27755897
relation P688
action find_reverse
entity Q21604485
relation P688
['Q21602718', 'P688', 'Q27755897'] ['Q21602718', 'P688', 'Q21604485']
ASK WHERE { resource:Q21602718 property:P688 resource:Q27755897 . resource:Q21602718 property:P688 resource:Q21604485 }
hypothetical protein BB_R44 NAD-binding protein    SCO2824 hypothetical protein    BB_R44
action is_in
entity hypothetical protein BB_R44
action intersection
action find_reverse
entity NAD-binding protein    SCO2824
relation encodes
action find_reverse
entity hypothetical protein    BB_R44
relation encodes
['hypothetical protein BB_R44', 'encodes', 'NAD-binding protein    SCO2824'] ['hypothetical protein BB_R44', 'encodes', 'hypothetical protein    BB_R44']
ASK WHERE { resource:hypothetical_protein_BB_R44 property:encodes resource:NAD-binding_protein____SCO2824 . resource:hypothetical_protein_BB_R44 property:encodes resource:hypothetical_protein____BB_R44 }
[]
nutrient
SYSTEM
NO and YES respectively
(Q21602718,P688,Q27755897) (Q21602718,P688,Q21604485)
action is_in
entity Q21602718
action intersection
action find_reverse
entity Q27755897
relation P688
action find_reverse
entity Q21604485
relation P688
[ANSWER]
['Q21602718', 'P688', 'Q27755897'] ['Q21602718', 'P688', 'Q21604485']
ASK WHERE { resource:Q21602718 property:P688 resource:Q27755897 . resource:Q21602718 property:P688 resource:Q21604485 }
NO and YES respectively
action is_in
entity hypothetical protein BB_R44
action intersection
action find_reverse
entity NAD-binding protein    SCO2824
relation encodes
action find_reverse
entity hypothetical protein    BB_R44
relation encodes
['hypothetical protein BB_R44', 'encodes', 'NAD-binding protein    SCO2824'] ['hypothetical protein BB_R44', 'encodes', 'hypothetical protein    BB_R44']
ASK WHERE { resource:hypothetical_protein_BB_R44 property:encodes resource:NAD-binding_protein____SCO2824 . resource:hypothetical_protein_BB_R44 property:encodes resource:hypothetical_protein____BB_R44 }
[]