Simple Question (Direct)
Simple Question
Q21124650
P681
Q15989253
USER
Which parts are the components of Serine/threonine-protein kinase TNNI3K ?
(Q21124650,P681,c(Q15989253))
action filter_type
action find
entity Q21124650
relation P681
type Q15989253
['Q21124650', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?q WHERE { resource:Q21124650 property:P681 ?q . ?q rdf:type ontology:Q15989253 }
Serine/threonine-protein kinase TNNI3K
action filter_type
action find
entity Serine/threonine-protein kinase TNNI3K
relation cell component
type part
['Serine/threonine-protein kinase TNNI3K', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?q WHERE { resource:Serine/threonine-protein_kinase_TNNI3K property:cell_component ?q . ?q rdf:type ontology:part }
[]
part
Q79899 Q40260
SYSTEM
cytoplasm, nucleus
Q79899 Q40260
(Q21124650,P681,c(Q15989253))
action filter_type
action find
entity Q21124650
relation P681
type Q15989253
[ANSWERS] are the components of Serine/threonine-protein kinase TNNI3K
['Q21124650', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?q WHERE { resource:Q21124650 property:P681 ?q . ?q rdf:type ontology:Q15989253 }
cytoplasm nucleus
Cytoplasm and nucleus are the components of Serine/threonine-protein kinase TNNI3K
cytoplasm nucleus
action filter_type
action find
entity Serine/threonine-protein kinase TNNI3K
relation cell component
type part
['Serine/threonine-protein kinase TNNI3K', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?q WHERE { resource:Serine/threonine-protein_kinase_TNNI3K property:cell_component ?q . ?q rdf:type ontology:part }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21124650
P688
Q863908
USER
What are the nucleic acid sequences that are encoded by Serine/threonine-protein kinase TNNI3K ?
(c(Q863908),P688,Q21124650)
action filter_type
action find_reverse
entity Q21124650
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q21124650']
SELECT DISTINCT ?b WHERE { ?b property:P688 resource:Q21124650 . ?b rdf:type ontology:Q863908 }
Serine/threonine-protein kinase TNNI3K
action filter_type
action find_reverse
entity Serine/threonine-protein kinase TNNI3K
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Serine/threonine-protein kinase TNNI3K']
SELECT DISTINCT ?b WHERE { ?b property:encodes resource:Serine/threonine-protein_kinase_TNNI3K . ?b rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18068254 Q18039977
SYSTEM
FPGT-TNNI3K, TNNI3K
Q18068254 Q18039977
(c(Q863908),P688,Q21124650)
action filter_type
action find_reverse
entity Q21124650
relation P688
type Q863908
The nucleic acid sequences that are encoded by Serine / threonine-protein kinase TNNI3 K are called [ANSWERS]
[{'concept': 'Q863908'}, 'P688', 'Q21124650']
SELECT DISTINCT ?b WHERE { ?b property:P688 resource:Q21124650 . ?b rdf:type ontology:Q863908 }
FPGT-TNNI3K TNNI3K
The nucleic acid sequences that are encoded by Serine / threonine-protein kinase TNNI3 K are called FPGT-TNNI3K and TNNI3K
FPGT-TNNI3K TNNI3K
action filter_type
action find_reverse
entity Serine/threonine-protein kinase TNNI3K
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Serine/threonine-protein kinase TNNI3K']
SELECT DISTINCT ?b WHERE { ?b property:encodes resource:Serine/threonine-protein_kinase_TNNI3K . ?b rdf:type ontology:nucleic_acid_sequence }
[]
Clarification
Simple Question|Single Entity|Indirect
Q18039977
P702
Q181394
USER
What is encoded by that nucleic acid sequence ?
(c(Q181394),P702,Q18039977)
action filter_type
action find_reverse
entity Q18039977
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q18039977']
SELECT DISTINCT ?h WHERE { ?h property:P702 resource:Q18039977 . ?h rdf:type ontology:Q181394 }
TNNI3K
action filter_type
action find_reverse
entity TNNI3K
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'TNNI3K']
SELECT DISTINCT ?h WHERE { ?h property:encoded_by resource:TNNI3K . ?h rdf:type ontology:nutrient }
[]
nutrient
Clarification for simple ques.
Q18068254
SYSTEM
Did you mean FPGT-TNNI3K ?
Q18068254 Q18039977
(c(Q181394),P702,Q18068254) (c(Q181394),P702,Q18039977)
[ANSWER]
[{'concept': 'Q181394'}, 'P702', 'Q18068254'] [{'concept': 'Q181394'}, 'P702', 'Q18039977']
SELECT DISTINCT ?h WHERE { ?h property:P702 resource:Q18039977 . ?h rdf:type ontology:Q181394 }
FPGT-TNNI3K TNNI3K
Did you mean FPGT-TNNI3K ?
FPGT-TNNI3K
[{'concept': 'nutrient'}, 'encoded by', 'FPGT-TNNI3K'] [{'concept': 'nutrient'}, 'encoded by', 'TNNI3K']
SELECT DISTINCT ?h WHERE { ?h property:encoded_by resource:TNNI3K . ?h rdf:type ontology:nutrient }
[]
Simple Question (Coreferenced)
USER
No, I meant TNNI3K. Could you tell me the answer for that?
(c(Q181394),P702,Q18039977)
Q18039977
[{'concept': 'Q181394'}, 'P702', 'Q18039977']
[{'concept': 'nutrient'}, 'encoded by', 'TNNI3K']
[]
Q21124650
SYSTEM
Serine/threonine-protein kinase TNNI3K
Q21124650
(c(Q181394),P702,Q18039977)
action filter_type
action find_reverse
entity Q18039977
relation P702
type Q181394
Of [ANSWER] is encoded by that nucleic acid sequence
[{'concept': 'Q181394'}, 'P702', 'Q18039977']
SELECT DISTINCT ?h WHERE { ?h property:P702 resource:Q18039977 . ?h rdf:type ontology:Q181394 }
Serine/threonine-protein kinase TNNI3K
Of Serine/threonine-protein kinase TNNI3K is encoded by that nucleic acid sequence
Serine/threonine-protein kinase TNNI3K
action filter_type
action find_reverse
entity TNNI3K
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'TNNI3K']
SELECT DISTINCT ?h WHERE { ?h property:encoded_by resource:TNNI3K . ?h rdf:type ontology:nutrient }
[]
Quantitative Reasoning (All)
Quantitative|Min/Max|Mult. entity type
P361
Q15989253 Q15989253 Q234460
USER
Which parts are max number of parts and texts a portion of ?
(c(Q15989253)|c(Q234460),P361,c(Q15989253))
action argmax
action union
action find_reverse_tuple_counts
relation P361
type Q15989253
type Q15989253
action find_reverse_tuple_counts
relation P361
type Q15989253
type Q234460
[[{'concept': 'Q15989253'}, {'concept': 'Q234460'}], 'P361', {'concept': 'Q15989253'}]
SELECT DISTINCT ?p WHERE { { SELECT DISTINCT ( MAX ( ?z ) AS ?b ) { SELECT DISTINCT ?x ( COUNT ( ?v ) AS ?z ) WHERE { { ?v property:P361 ?x . ?x rdf:type ontology:Q15989253 . ?v rdf:type ontology:Q15989253 } UNION { ?v property:P361 ?x . ?x rdf:type ontology:Q15989253 . ?v rdf:type ontology:Q234460 } } GROUP BY ?x } } . { SELECT DISTINCT ?p ( COUNT ( ?a ) AS ?r ) WHERE { { ?a rdf:type ontology:Q15989253 . ?p rdf:type ontology:Q15989253 . ?a property:P361 ?p } UNION { ?a property:P361 ?p . ?p rdf:type ontology:Q15989253 . ?a rdf:type ontology:Q234460 } } GROUP BY ?p } . FILTER ( ?r = ?b ) }
action argmax
action union
action find_reverse_tuple_counts
relation part of
type part
type part
action find_reverse_tuple_counts
relation part of
type part
type text
[[{'concept': 'part'}, {'concept': 'text'}], 'part of', {'concept': 'part'}]
SELECT DISTINCT ?p WHERE { { SELECT DISTINCT ( MAX ( ?z ) AS ?b ) { SELECT DISTINCT ?x ( COUNT ( ?v ) AS ?z ) WHERE { { ?v property:part_of ?x . ?x rdf:type ontology:part . ?v rdf:type ontology:part } UNION { ?v property:part_of ?x . ?x rdf:type ontology:part . ?v rdf:type ontology:text } } GROUP BY ?x } } . { SELECT DISTINCT ?p ( COUNT ( ?a ) AS ?r ) WHERE { { ?a rdf:type ontology:part . ?p rdf:type ontology:part . ?a property:part_of ?p } UNION { ?a property:part_of ?p . ?p rdf:type ontology:part . ?a rdf:type ontology:text } } GROUP BY ?p } . FILTER ( ?r = ?b ) }
[]
part part text
Q24780424
SYSTEM
Armadillo-type fold
Q24780424
(c(Q15989253)|c(Q234460),P361,c(Q15989253))
action argmax
action union
action find_reverse_tuple_counts
relation P361
type Q15989253
type Q15989253
action find_reverse_tuple_counts
relation P361
type Q15989253
type Q234460
[ANSWER] is max number of parts and texts a portion of
[[{'concept': 'Q15989253'}, {'concept': 'Q234460'}], 'P361', {'concept': 'Q15989253'}]
SELECT DISTINCT ?p WHERE { { SELECT DISTINCT ( MAX ( ?z ) AS ?b ) { SELECT DISTINCT ?x ( COUNT ( ?v ) AS ?z ) WHERE { { ?v property:P361 ?x . ?x rdf:type ontology:Q15989253 . ?v rdf:type ontology:Q15989253 } UNION { ?v property:P361 ?x . ?x rdf:type ontology:Q15989253 . ?v rdf:type ontology:Q234460 } } GROUP BY ?x } } . { SELECT DISTINCT ?p ( COUNT ( ?a ) AS ?r ) WHERE { { ?a rdf:type ontology:Q15989253 . ?p rdf:type ontology:Q15989253 . ?a property:P361 ?p } UNION { ?a property:P361 ?p . ?p rdf:type ontology:Q15989253 . ?a rdf:type ontology:Q234460 } } GROUP BY ?p } . FILTER ( ?r = ?b ) }
Armadillo-type fold
Armadillo-type fold is max number of parts and texts a portion of
Armadillo-type fold
action argmax
action union
action find_reverse_tuple_counts
relation part of
type part
type part
action find_reverse_tuple_counts
relation part of
type part
type text
[[{'concept': 'part'}, {'concept': 'text'}], 'part of', {'concept': 'part'}]
SELECT DISTINCT ?p WHERE { { SELECT DISTINCT ( MAX ( ?z ) AS ?b ) { SELECT DISTINCT ?x ( COUNT ( ?v ) AS ?z ) WHERE { { ?v property:part_of ?x . ?x rdf:type ontology:part . ?v rdf:type ontology:part } UNION { ?v property:part_of ?x . ?x rdf:type ontology:part . ?v rdf:type ontology:text } } GROUP BY ?x } } . { SELECT DISTINCT ?p ( COUNT ( ?a ) AS ?r ) WHERE { { ?a rdf:type ontology:part . ?p rdf:type ontology:part . ?a property:part_of ?p } UNION { ?a property:part_of ?p . ?p rdf:type ontology:part . ?a rdf:type ontology:text } } GROUP BY ?p } . FILTER ( ?r = ?b ) }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q24780424 Q24768341
P361
Q15989253
USER
Is Histone deacetylase, glutamine rich N-terminal domain a component of that one ?
(Q24768341,P361,Q24780424)
action is_in
entity Q24768341
action find
entity Q24780424
relation P361
['Q24768341', 'P361', 'Q24780424']
ASK WHERE { resource:Q24780424 property:P361 resource:Q24768341 }
Armadillo-type fold Histone deacetylase, glutamine rich N-terminal domain
action is_in
entity Histone deacetylase, glutamine rich N-terminal domain
action find
entity Armadillo-type fold
relation part of
['Histone deacetylase, glutamine rich N-terminal domain', 'part of', 'Armadillo-type fold']
ASK WHERE { resource:Armadillo-type_fold property:part_of resource:Histone_deacetylase,_glutamine_rich_N-terminal_domain }
[]
part
SYSTEM
NO
(Q24768341,P361,Q24780424)
action is_in
entity Q24768341
action find
entity Q24780424
relation P361
[ANSWER]
['Q24768341', 'P361', 'Q24780424']
ASK WHERE { resource:Q24780424 property:P361 resource:Q24768341 }
No
action is_in
entity Histone deacetylase, glutamine rich N-terminal domain
action find
entity Armadillo-type fold
relation part of
['Histone deacetylase, glutamine rich N-terminal domain', 'part of', 'Armadillo-type fold']
ASK WHERE { resource:Armadillo-type_fold property:part_of resource:Histone_deacetylase,_glutamine_rich_N-terminal_domain }
[]
Verification (Boolean) (All)
Verification|3 entities, all direct, 2 are query entities
Q21124650 Q18039977 Q23260468
P702
Q863908
USER
Does TNNI3K and hypothetical protein    Mb3796c encode Serine/threonine-protein kinase TNNI3K ?
(Q21124650,P702,Q18039977) (Q21124650,P702,Q23260468)
action is_in
entity Q21124650
action intersection
action find_reverse
entity Q18039977
relation P702
action find_reverse
entity Q23260468
relation P702
['Q21124650', 'P702', 'Q18039977'] ['Q21124650', 'P702', 'Q23260468']
ASK WHERE { resource:Q21124650 property:P702 resource:Q18039977 . resource:Q21124650 property:P702 resource:Q23260468 }
Serine/threonine-protein kinase TNNI3K TNNI3K hypothetical protein    Mb3796c
action is_in
entity Serine/threonine-protein kinase TNNI3K
action intersection
action find_reverse
entity TNNI3K
relation encoded by
action find_reverse
entity hypothetical protein    Mb3796c
relation encoded by
['Serine/threonine-protein kinase TNNI3K', 'encoded by', 'TNNI3K'] ['Serine/threonine-protein kinase TNNI3K', 'encoded by', 'hypothetical protein    Mb3796c']
ASK WHERE { resource:Serine/threonine-protein_kinase_TNNI3K property:encoded_by resource:TNNI3K . resource:Serine/threonine-protein_kinase_TNNI3K property:encoded_by resource:hypothetical_protein____Mb3796c }
[]
nucleic acid sequence
SYSTEM
YES and NO respectively
(Q21124650,P702,Q18039977) (Q21124650,P702,Q23260468)
action is_in
entity Q21124650
action intersection
action find_reverse
entity Q18039977
relation P702
action find_reverse
entity Q23260468
relation P702
[ANSWER]
['Q21124650', 'P702', 'Q18039977'] ['Q21124650', 'P702', 'Q23260468']
ASK WHERE { resource:Q21124650 property:P702 resource:Q18039977 . resource:Q21124650 property:P702 resource:Q23260468 }
YES and NO respectively
action is_in
entity Serine/threonine-protein kinase TNNI3K
action intersection
action find_reverse
entity TNNI3K
relation encoded by
action find_reverse
entity hypothetical protein    Mb3796c
relation encoded by
['Serine/threonine-protein kinase TNNI3K', 'encoded by', 'TNNI3K'] ['Serine/threonine-protein kinase TNNI3K', 'encoded by', 'hypothetical protein    Mb3796c']
ASK WHERE { resource:Serine/threonine-protein_kinase_TNNI3K property:encoded_by resource:TNNI3K . resource:Serine/threonine-protein_kinase_TNNI3K property:encoded_by resource:hypothetical_protein____Mb3796c }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21124650
P680
Q44424
USER
What represents the molecular function of that nutrient ?
action filter_type
action find
entity Q21124650
relation P680
type Q44424
SELECT DISTINCT ?g WHERE { resource:Q21124650 property:P680 ?g . ?g rdf:type ontology:Q44424 }
Serine/threonine-protein kinase TNNI3K
action filter_type
action find
entity Serine/threonine-protein kinase TNNI3K
relation molecular function
type chemical bond
SELECT DISTINCT ?g WHERE { resource:Serine/threonine-protein_kinase_TNNI3K property:molecular_function ?g . ?g rdf:type ontology:chemical_bond }
[]
chemical bond
Q13667380
SYSTEM
metal ion binding
Q13667380
action filter_type
action find
entity Q21124650
relation P680
type Q44424
The [ANSWER] represents the molecular function of that nutrient
SELECT DISTINCT ?g WHERE { resource:Q21124650 property:P680 ?g . ?g rdf:type ontology:Q44424 }
metal ion binding
The metal ion binding represents the molecular function of that nutrient
metal ion binding
action filter_type
action find
entity Serine/threonine-protein kinase TNNI3K
relation molecular function
type chemical bond
SELECT DISTINCT ?g WHERE { resource:Serine/threonine-protein_kinase_TNNI3K property:molecular_function ?g . ?g rdf:type ontology:chemical_bond }
[]