Simple Question (Direct)
Simple Question
Q23445560
P703
Q631147
USER
Where is ATP-dependent proteinase    HI0462 found ?
(Q23445560,P703,c(Q631147))
action filter_type
action find
entity Q23445560
relation P703
type Q631147
['Q23445560', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?p WHERE { resource:Q23445560 property:P703 ?p . ?p rdf:type ontology:Q631147 }
ATP-dependent proteinase    HI0462
action filter_type
action find
entity ATP-dependent proteinase    HI0462
relation found in taxon
type infraspecific name
['ATP-dependent proteinase    HI0462', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?p WHERE { resource:ATP-dependent_proteinase____HI0462 property:found_in_taxon ?p . ?p rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102948
SYSTEM
Haemophilus influenzae Rd KW20
Q21102948
(Q23445560,P703,c(Q631147))
action filter_type
action find
entity Q23445560
relation P703
type Q631147
ATP-dependent proteinase HI0462 is found in [ANSWER]
['Q23445560', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?p WHERE { resource:Q23445560 property:P703 ?p . ?p rdf:type ontology:Q631147 }
Haemophilus influenzae Rd KW20
ATP-dependent proteinase HI0462 is found in Haemophilus influenzae Rd KW20
Haemophilus influenzae Rd KW20
action filter_type
action find
entity ATP-dependent proteinase    HI0462
relation found in taxon
type infraspecific name
['ATP-dependent proteinase    HI0462', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?p WHERE { resource:ATP-dependent_proteinase____HI0462 property:found_in_taxon ?p . ?p rdf:type ontology:infraspecific_name }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23445560
P688
Q863908
USER
Which nucleic acid sequence encodes ATP-dependent proteinase    HI0462 ?
(c(Q863908),P688,Q23445560)
action filter_type
action find_reverse
entity Q23445560
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q23445560']
SELECT DISTINCT ?v WHERE { ?v property:P688 resource:Q23445560 . ?v rdf:type ontology:Q863908 }
ATP-dependent proteinase    HI0462
action filter_type
action find_reverse
entity ATP-dependent proteinase    HI0462
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'ATP-dependent proteinase    HI0462']
SELECT DISTINCT ?v WHERE { ?v property:encodes resource:ATP-dependent_proteinase____HI0462 . ?v rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23327323
SYSTEM
ATP-dependent proteinase    HI0462
Q23327323
(c(Q863908),P688,Q23445560)
action filter_type
action find_reverse
entity Q23445560
relation P688
type Q863908
ATP-dependent proteinase HI0462 encodes ATP-dependent proteinase HI0462
[{'concept': 'Q863908'}, 'P688', 'Q23445560']
SELECT DISTINCT ?v WHERE { ?v property:P688 resource:Q23445560 . ?v rdf:type ontology:Q863908 }
ATP-dependent proteinase    HI0462
ATP-dependent proteinase HI0462 encodes ATP-dependent proteinase HI0462
ATP-dependent proteinase    HI0462
action filter_type
action find_reverse
entity ATP-dependent proteinase    HI0462
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'ATP-dependent proteinase    HI0462']
SELECT DISTINCT ?v WHERE { ?v property:encodes resource:ATP-dependent_proteinase____HI0462 . ?v rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23327323
P702
Q181394
USER
Which nutrient does that nucleic acid sequence encode ?
(c(Q181394),P702,Q23327323)
action filter_type
action find_reverse
entity Q23327323
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q23327323']
SELECT DISTINCT ?q WHERE { ?q rdf:type ontology:Q181394 . ?q property:P702 resource:Q23327323 }
ATP-dependent proteinase    HI0462
action filter_type
action find_reverse
entity ATP-dependent proteinase    HI0462
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'ATP-dependent proteinase    HI0462']
SELECT DISTINCT ?q WHERE { ?q rdf:type ontology:nutrient . ?q property:encoded_by resource:ATP-dependent_proteinase____HI0462 }
[]
nutrient
Q23445560
SYSTEM
ATP-dependent proteinase    HI0462
Q23445560
(c(Q181394),P702,Q23327323)
action filter_type
action find_reverse
entity Q23327323
relation P702
type Q181394
That nucleic acid sequence encodes an ATP-dependent proteinase HI0462
[{'concept': 'Q181394'}, 'P702', 'Q23327323']
SELECT DISTINCT ?q WHERE { ?q rdf:type ontology:Q181394 . ?q property:P702 resource:Q23327323 }
ATP-dependent proteinase    HI0462
That nucleic acid sequence encodes an ATP-dependent proteinase HI0462
ATP-dependent proteinase    HI0462
action filter_type
action find_reverse
entity ATP-dependent proteinase    HI0462
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'ATP-dependent proteinase    HI0462']
SELECT DISTINCT ?q WHERE { ?q rdf:type ontology:nutrient . ?q property:encoded_by resource:ATP-dependent_proteinase____HI0462 }
[]
Logical Reasoning (All)
Logical|Intersection|Multiple_Relation
Q14860365 Q21102948
P703 P680
Q181394
USER
Which nutrients are found in the taxon Haemophilus influenzae Rd KW20 and have nucleotide binding as their molecular function ?
AND((c(Q181394),P703,Q21102948), (c(Q181394),P680,Q14860365))
action filter_type
action intersection
action find_reverse
entity Q21102948
relation P703
action find_reverse
entity Q14860365
relation P680
type Q181394
{'AND': [[{'concept': 'Q181394'}, 'P703', 'Q21102948'], [{'concept': 'Q181394'}, 'P680', 'Q14860365']]}
SELECT DISTINCT ?g WHERE { ?g property:P703 resource:Q21102948 . ?g property:P680 resource:Q14860365 . ?g rdf:type ontology:Q181394 }
nucleotide binding Haemophilus influenzae Rd KW20
action filter_type
action intersection
action find_reverse
entity Haemophilus influenzae Rd KW20
relation found in taxon
action find_reverse
entity nucleotide binding
relation molecular function
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'found in taxon', 'Haemophilus influenzae Rd KW20'], [{'concept': 'nutrient'}, 'molecular function', 'nucleotide binding']]}
SELECT DISTINCT ?g WHERE { ?g property:found_in_taxon resource:Haemophilus_influenzae_Rd_KW20 . ?g property:molecular_function resource:nucleotide_binding . ?g rdf:type ontology:nutrient }
[]
nutrient
Q23446545 Q23445947 Q23446315 Q23445567 Q23446240 Q23445303 Q23446552 Q23446239 Q23445939 Q23445205
SYSTEM
Some of them are 2-succinylbenzoate-CoA ligase    HI0194, transcription elongation factor NusA    HI1283, chromosomal replication initiation protein    HI0993, gamma-glutamyl kinase    HI0900, uridylate kinase    HI1065, ATP-dependent RNA helicase SrmB    HI0422, nicotinamide-nucleotide adenylyltransferase    HI0763, molybdenum cofactor biosynthesis protein MogA    HI0336, transcription termination factor Rho    HI0295, GTP-binding protein LepA    HI0016
Q23445205 Q23446063 Q23446060 Q23445176 Q23445861 Q23445689 Q23446385 Q23445170 Q23445846 Q23445765 Q23445368 Q23446221 Q23445560 Q23445567 Q23445876 Q23446012 Q23446545 Q23445473 Q23445890 Q23446074 Q23445674 Q23446400 Q23445899 Q23445060 Q23445061 Q23445066 Q23445771 Q23445942 Q23445947 Q23445673 Q23446476 Q23445573 Q23445867 Q23446575 Q23446477 Q23446172 Q23446304 Q23446203 Q23446040 Q23446114 Q23445303 Q23445638 Q23446288 Q23445782 Q23445268 Q23446286 Q23446568 Q23446569 Q23446440 Q23445380 Q23446560 Q23445542 Q23445369 Q23446163 Q23446580 Q23446102 Q23446218 Q23446315 Q23445793 Q23446298 Q23445796 Q23446292 Q23445122 Q23446297 Q23445127 Q23446454 Q23445128 Q23445558 Q23445807 Q23445112 Q23445920 Q23445923 Q23445922 Q23446482 Q23445977 Q23445091 Q23445323 Q23445326 Q23446139 Q23445987 Q23445982 Q23445034 Q23445400 Q23445130 Q23445137 Q23445041 Q23445522 Q23446506 Q23446507 Q23445838 Q23446500 Q23446421 Q23446059 Q23446423 Q23445931 Q23446425 Q23445259 Q23446427 Q23446185 Q23446052 Q23445939 Q23445082 Q23446187 Q23446330 Q23446335 Q23445997 Q23446487 Q23445999 Q23445339 Q23445431 Q23445101 Q23445100 Q23445731 Q23445734 Q23445735 Q23444995 Q23445633 Q23445726 Q23446179 Q23446492 Q23446327 Q23445589 Q23446329 Q23444977 Q23445509 Q23445115 Q23445502 Q23445055 Q23445537 Q23444980 Q23445742 Q23445476 Q23446239 Q23446486 Q23445858 Q23445504 Q23446032 Q23446236 Q23446408 Q23445594 Q23446144 Q23446311 Q23446442 Q23444966 Q23444964 Q23446318 Q23445697 Q23445166 Q23445692 Q23445043 Q23445290 Q23445297 Q23445511 Q23445295 Q23445969 Q23445964 Q23446412 Q23445612 Q23445962 Q23446003 Q23446552 Q23446555 Q23446004 Q23445190 Q23446247 Q23446008 Q23445194 Q23446240 Q23446242
AND((c(Q181394),P703,Q21102948), (c(Q181394),P680,Q14860365))
action filter_type
action intersection
action find_reverse
entity Q21102948
relation P703
action find_reverse
entity Q14860365
relation P680
type Q181394
[ANSWERS]
{'AND': [[{'concept': 'Q181394'}, 'P703', 'Q21102948'], [{'concept': 'Q181394'}, 'P680', 'Q14860365']]}
SELECT DISTINCT ?g WHERE { ?g property:P703 resource:Q21102948 . ?g property:P680 resource:Q14860365 . ?g rdf:type ontology:Q181394 }
GTP-binding protein LepA    HI0016 selenophosphate synthetase    HI0200m transcriptional regulatory protein    HI0410 ATP-dependent helicase    HI0387 galactokinase    HI0819 DL-methionine transporter ATP-binding protein    HI0621 ABC transporter ATP-binding protein    HI0408 GTP-binding protein EngA    HI0136 Signal recognition particle protein    HI0106 selenocysteine-specific elongation factor    HI0709 ATP-dependent helicase HepA    HI0616 DNA topoisomerase IV subunit B    HI1528 ATP-dependent proteinase    HI0462 gamma-glutamyl kinase    HI0900 asparagine synthetase AsnA    HI0564 cytidylate kinase    HI1219 2-succinylbenzoate-CoA ligase    HI0194 proline--tRNA ligase    HI0729 ATP-dependent Clp protease ATPase subunit    HI0859 nitrogen regulatory protein P-II    HI0337 ATP phosphoribosyltransferase    HI0468 adenylate cyclase    HI0604 thymidylate kinase    HI0456 shikimate kinase    HI0207 histidine--tRNA ligase    HI0369 homoserine kinase    HI0088 NAD(P) transhydrogenase subunit alpha    HI1362 L-fuculokinase    HI0613 transcription elongation factor NusA    HI1283 tRNA delta(2)-isopentenylpyrophosphate transferase    HI0068 hypothetical protein    HI0065 ribonucleotide-diphosphate reductase subunit alpha    HI1659 uracil phosphoribosyltransferase    HI1228 nitrate/nitrite sensor protein NarQ    HI0267 ferric transporter ATP-binding protein    HI0126 serine--tRNA ligase    HI0110 chaperonin GroEL    HI0543 urease accessory protein    HI0536 chaperone protein HscA    HI0373 phenylalanine--tRNA ligase subunit alpha    HI1311 ATP-dependent RNA helicase SrmB    HI0422 phosphomethylpyrimidine kinase    HI0416 glutamine synthetase    HI0865 thymidine kinase    HI0529 ABC transporter ATP-binding protein    HI0354 threonine--tRNA ligase    HI1367 carbamate kinase    HI0595 5-(carboxyamino)imidazole ribonucleotide synthase    HI1616 inosine 5'-monophosphate dehydrogenase    HI0221 tryptophan--tRNA ligase    HI0637 recombinase A    HI0600 inorganic polyphosphate/ATP-NAD kinase    HI0072 iron (chelated) transporter ATP-binding protein    HI0361 acetyl-CoA carboxylase biotin carboxylase subunit    HI0972 DNA gyrase subunit B    HI0567 D-alanine--D-alanine ligase    HI1140 phosphoribosylamine--glycine ligase    HI0888 chromosomal replication initiation protein    HI0993 long chain fatty acid CoA ligase    HI0002 hypothetical protein    HI1400 glycine--tRNA ligase subunit alpha    HI0927 ribokinase    HI0505 recombination protein F    HI0991 CitG protein    HI0021 glycerol kinase    HI0691 2-dehydro-3-deoxygluconokinase    HI0049 GTP pyrophosphokinase    HI0334 GMP synthase    HI0222 translation initiation factor IF-2    HI1284 tRNA-specific 2-thiouridylase MnmA    HI0174 D-ribose transporter ATP binding protein    HI0502 deoxyribonucleotide triphosphate pyrophosphatase    HI0260 N-acetyl-D-glucosamine kinase    HI0182 acetyl-CoA carboxylase carboxyltransferase subunit alpha    HI0406 50S ribosomal protein L23    HI0779 phosphoribosylformylglycinamidine synthase    HI0752 elongation factor P--(R)-beta-lysine ligase    HI0836 methionine adenosyltransferase    HI1172 elongation factor G    HI0579 uridine kinase    HI0132 cysteine--tRNA ligase    HI0078 ATP-dependent protease ATP-binding subunit HslU    HI0497 lipid transporter ATP-binding/permease    HI0060 acetyl-CoA carboxylase carboxyltransferase subunit beta    HI1260 cell cycle protein    HI0404 glycine--tRNA ligase subunit beta    HI0924 glyceraldehyde-3-phosphate dehydrogenase    HI0001 phenylalanine--tRNA ligase subunit beta    HI1312 primosome assembly protein PriA    HI0339 [glutamate--ammonia-ligase] adenylyltransferase    HI0069 [citrate (pro-3S)-lyase] ligase    HI0025 glutamate--tRNA ligase    HI0274 NAD nucleotidase    HI0206 methionine--tRNA ligase    HI1276 ATP-dependent DNA helicase RecG    HI1740 folylpolyglutamate synthase/dihydrofolate synthase    HI1261 F0F1 ATP synthase subunit beta    HI0479 diacylglycerol kinase    HI0335 GTP cyclohydrolase I    HI1447 ATP-dependent RNA helicase    HI0231 transcription termination factor Rho    HI0295 1-phosphofructokinase    HI0447 hypothetical protein    HI0125 excinuclease ABC subunit A    HI0249 nucleoside triphosphate pyrophosphohydrolase    HI0460 GTP-binding protein Era    HI0013 lysine--tRNA ligase    HI1211 glucose-1-phosphate adenylyltransferase    HI1359 UDP-N-acetylmuramoylalanine-D-glutamate ligase-like protein    HI0121 bifunctional aspartokinase I/homoserine dehydrogenase I    HI0089 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase    HI1526 argininosuccinate synthase    HI1727 GTP-dependent nucleic acid-binding protein EngD    HI0393 phosphoenolpyruvate carboxykinase    HI0809 ribose-phosphate pyrophosphokinase    HI1609 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase    HI0475 adenosine monophosphate-protein transferase    HI0977 N-acetylmannosamine kinase    HI0144 DNA polymerase III subunits gamma and tau    HI1229 nucleoside diphosphate kinase    HI0876 valine--tRNA ligase    HI1391 GTP cyclohydrolase II    HI0212 acetate kinase    HI1204 asparagine--tRNA ligase    HI1302 phosphoglycerate kinase    HI0525 xylulose kinase    HI1113 hypothetical protein    HI1637 phosphoribosylaminoimidazole synthetase    HI1429 6-phosphofructokinase    HI0982 pyridoxamine kinase    HI0405 aspartate--tRNA ligase    HI0317 adenylate kinase    HI0349 molybdenum cofactor biosynthesis protein MogA    HI0336 anaerobic ribonucleoside triphosphate reductase    HI0075 leucine--tRNA ligase    HI0921 tyrosine--tRNA ligase    HI1610 Holliday junction DNA helicase RuvB    HI0312 arginine--tRNA ligase    HI1583 Holliday junction DNA helicase RuvA    HI0313 pyruvate kinase    HI1573 cAMP-regulatory protein    HI0957 heat shock protein 90    HI0104 type I restriction enzyme    HI1285 molecular chaperone DnaK    HI1237 guanylate kinase    HI1743 3-deoxy-D-manno-octulosonic-acid kinase    HI0260.1 CTP synthase    HI1077 polyA polymerase    HI0063 preprotein translocase subunit SecA    HI0909 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase    HI0064 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase    HI0583 ribonuclease D    HI0390 cyclic 3',5'-adenosine monophosphate phosphodiesterase    HI0399 phosphoribosylaminoimidazole-succinocarboxamide synthase    HI1726 cytidylate kinase    HI1646m DNA gyrase subunit A    HI1264 glutamine--tRNA ligase    HI1354 peptide chain release factor 3    HI1735 tRNA modification GTPase TrmE    HI1002 tetraacyldisaccharide 4'-kinase    HI0059 nicotinamide-nucleotide adenylyltransferase    HI0763 F0F1 ATP synthase subunit alpha    HI0481 protein transport protein    HI0298 iron(III) ABC transporter ATP-binding protein    HI0099 hypothetical protein    HI0091 elongation factor Tu    HI0632 alanine--tRNA ligase    HI0814 uridylate kinase    HI1065 DNA repair protein    HI0070
Molybdenum cofactor biosynthesis protein MogA HI0336, transcription termination factor Rho HI0295 and GTP-binding protein LepA HI0016 are found in the taxon Haemophilus influenzae Rd KW20 and have nucleotide binding as their molecular function
2-succinylbenzoate-CoA ligase    HI0194 transcription elongation factor NusA    HI1283 chromosomal replication initiation protein    HI0993 gamma-glutamyl kinase    HI0900 uridylate kinase    HI1065 ATP-dependent RNA helicase SrmB    HI0422 nicotinamide-nucleotide adenylyltransferase    HI0763 molybdenum cofactor biosynthesis protein MogA    HI0336 transcription termination factor Rho    HI0295 GTP-binding protein LepA    HI0016
action filter_type
action intersection
action find_reverse
entity Haemophilus influenzae Rd KW20
relation found in taxon
action find_reverse
entity nucleotide binding
relation molecular function
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'found in taxon', 'Haemophilus influenzae Rd KW20'], [{'concept': 'nutrient'}, 'molecular function', 'nucleotide binding']]}
SELECT DISTINCT ?g WHERE { ?g property:found_in_taxon resource:Haemophilus_influenzae_Rd_KW20 . ?g property:molecular_function resource:nucleotide_binding . ?g rdf:type ontology:nutrient }
[]
Simple Question (Coreferenced)
Simple Question|Mult. Entity
Q23446545 Q23445947 Q23446315 Q23445567 Q23446240 Q23445303 Q23446552 Q23446239 Q23445939 Q23445205
P688
Q863908
USER
Which nucleic acid sequences encode those nutrients ?
(c(Q863908),P688,Q23446545) (c(Q863908),P688,Q23445947) (c(Q863908),P688,Q23446315) (c(Q863908),P688,Q23445567) (c(Q863908),P688,Q23446240) (c(Q863908),P688,Q23445303) (c(Q863908),P688,Q23446552) (c(Q863908),P688,Q23446239) (c(Q863908),P688,Q23445939) (c(Q863908),P688,Q23445205)
action filter_type
action find_reverse
entity prev_answer
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q23446545'] [{'concept': 'Q863908'}, 'P688', 'Q23445947'] [{'concept': 'Q863908'}, 'P688', 'Q23446315'] [{'concept': 'Q863908'}, 'P688', 'Q23445567'] [{'concept': 'Q863908'}, 'P688', 'Q23446240'] [{'concept': 'Q863908'}, 'P688', 'Q23445303'] [{'concept': 'Q863908'}, 'P688', 'Q23446552'] [{'concept': 'Q863908'}, 'P688', 'Q23446239'] [{'concept': 'Q863908'}, 'P688', 'Q23445939'] [{'concept': 'Q863908'}, 'P688', 'Q23445205']
SELECT DISTINCT ?x WHERE { ?x property:P688 ?f . ?x rdf:type ontology:Q863908 . VALUES ( ?f ) { ( resource:Q23445205 ) ( resource:Q23446063 ) ( resource:Q23446060 ) } }
2-succinylbenzoate-CoA ligase    HI0194 transcription elongation factor NusA    HI1283 chromosomal replication initiation protein    HI0993 gamma-glutamyl kinase    HI0900 uridylate kinase    HI1065 ATP-dependent RNA helicase SrmB    HI0422 nicotinamide-nucleotide adenylyltransferase    HI0763 molybdenum cofactor biosynthesis protein MogA    HI0336 transcription termination factor Rho    HI0295 GTP-binding protein LepA    HI0016
action filter_type
action find_reverse
entity prev_answer
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', '2-succinylbenzoate-CoA ligase    HI0194'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'transcription elongation factor NusA    HI1283'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'chromosomal replication initiation protein    HI0993'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'gamma-glutamyl kinase    HI0900'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'uridylate kinase    HI1065'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'ATP-dependent RNA helicase SrmB    HI0422'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'nicotinamide-nucleotide adenylyltransferase    HI0763'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'molybdenum cofactor biosynthesis protein MogA    HI0336'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'transcription termination factor Rho    HI0295'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'GTP-binding protein LepA    HI0016']
SELECT DISTINCT ?x WHERE { ?x property:encodes ?f . ?x rdf:type ontology:nucleic_acid_sequence . VALUES ( ?f ) { ( resource:GTP-binding_protein_LepA____HI0016 ) ( resource:selenophosphate_synthetase____HI0200m ) ( resource:transcriptional_regulatory_protein____HI0410 ) } }
[]
nucleic acid sequence
Q23328292 Q23327704 Q23328063
SYSTEM
2-succinylbenzoate-CoA ligase    HI0194, transcription elongation factor NusA    HI1283, chromosomal replication initiation protein    HI0993
Q23328292 Q23327704 Q23328063 Q23327330 Q23327989 Q23327075 Q23328299 Q23327988 Q23327697 Q23326979
(c(Q863908),P688,Q23446545) (c(Q863908),P688,Q23445947) (c(Q863908),P688,Q23446315) (c(Q863908),P688,Q23445567) (c(Q863908),P688,Q23446240) (c(Q863908),P688,Q23445303) (c(Q863908),P688,Q23446552) (c(Q863908),P688,Q23446239) (c(Q863908),P688,Q23445939) (c(Q863908),P688,Q23445205)
action filter_type
action find_reverse
entity prev_answer
relation P688
type Q863908
[ANSWERS]
[{'concept': 'Q863908'}, 'P688', 'Q23446545'] [{'concept': 'Q863908'}, 'P688', 'Q23445947'] [{'concept': 'Q863908'}, 'P688', 'Q23446315'] [{'concept': 'Q863908'}, 'P688', 'Q23445567'] [{'concept': 'Q863908'}, 'P688', 'Q23446240'] [{'concept': 'Q863908'}, 'P688', 'Q23445303'] [{'concept': 'Q863908'}, 'P688', 'Q23446552'] [{'concept': 'Q863908'}, 'P688', 'Q23446239'] [{'concept': 'Q863908'}, 'P688', 'Q23445939'] [{'concept': 'Q863908'}, 'P688', 'Q23445205']
SELECT DISTINCT ?x WHERE { ?x property:P688 ?f . ?x rdf:type ontology:Q863908 . VALUES ( ?f ) { ( resource:Q23445205 ) ( resource:Q23446063 ) ( resource:Q23446060 ) } }
2-succinylbenzoate-CoA ligase    HI0194 transcription elongation factor NusA    HI1283 chromosomal replication initiation protein    HI0993 gamma-glutamyl kinase    HI0900 uridylate kinase    HI1065 ATP-dependent RNA helicase SrmB    HI0422 nicotinamide-nucleotide adenylyltransferase    HI0763 molybdenum cofactor biosynthesis protein MogA    HI0336 transcription termination factor Rho    HI0295 GTP-binding protein LepA    HI0016
2-succinylbenzoate-CoA ligase HI0194, transcription elongation factor NusA HI1283 and chromosomal replication initiation protein HI0993 encode those nutrients
2-succinylbenzoate-CoA ligase    HI0194 transcription elongation factor NusA    HI1283 chromosomal replication initiation protein    HI0993
action filter_type
action find_reverse
entity prev_answer
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', '2-succinylbenzoate-CoA ligase    HI0194'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'transcription elongation factor NusA    HI1283'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'chromosomal replication initiation protein    HI0993'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'gamma-glutamyl kinase    HI0900'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'uridylate kinase    HI1065'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'ATP-dependent RNA helicase SrmB    HI0422'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'nicotinamide-nucleotide adenylyltransferase    HI0763'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'molybdenum cofactor biosynthesis protein MogA    HI0336'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'transcription termination factor Rho    HI0295'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'GTP-binding protein LepA    HI0016']
SELECT DISTINCT ?x WHERE { ?x property:encodes ?f . ?x rdf:type ontology:nucleic_acid_sequence . VALUES ( ?f ) { ( resource:GTP-binding_protein_LepA____HI0016 ) ( resource:selenophosphate_synthetase____HI0200m ) ( resource:transcriptional_regulatory_protein____HI0410 ) } }
[]
Clarification
Simple Question|Single Entity|Indirect
Q23446545
P682
Q3249551
USER
Which process is that nutrient involved in ?
(Q23446545,P682,c(Q3249551))
action filter_type
action find
entity Q23446545
relation P682
type Q3249551
['Q23446545', 'P682', {'concept': 'Q3249551'}]
SELECT DISTINCT ?e WHERE { resource:Q23446545 property:P682 ?e . ?e rdf:type ontology:Q3249551 }
2-succinylbenzoate-CoA ligase    HI0194
action filter_type
action find
entity 2-succinylbenzoate-CoA ligase    HI0194
relation biological process
type process
['2-succinylbenzoate-CoA ligase    HI0194', 'biological process', {'concept': 'process'}]
SELECT DISTINCT ?e WHERE { resource:2-succinylbenzoate-CoA_ligase____HI0194 property:biological_process ?e . ?e rdf:type ontology:process }
[]
process
Clarification for simple ques.
Q23446545
SYSTEM
Did you mean 2-succinylbenzoate-CoA ligase    HI0194 ?
Q23328292 Q23327704 Q23328063
(Q23328292,P682,c(Q3249551)) (Q23327704,P682,c(Q3249551)) (Q23328063,P682,c(Q3249551))
[ANSWER]
['Q23328292', 'P682', {'concept': 'Q3249551'}] ['Q23327704', 'P682', {'concept': 'Q3249551'}] ['Q23328063', 'P682', {'concept': 'Q3249551'}]
SELECT DISTINCT ?e WHERE { resource:Q23446545 property:P682 ?e . ?e rdf:type ontology:Q3249551 }
2-succinylbenzoate-CoA ligase    HI0194 transcription elongation factor NusA    HI1283 chromosomal replication initiation protein    HI0993
Did you mean 2-succinylbenzoate-CoA ligase    HI0194 ?
2-succinylbenzoate-CoA ligase    HI0194
['2-succinylbenzoate-CoA ligase    HI0194', 'biological process', {'concept': 'process'}] ['transcription elongation factor NusA    HI1283', 'biological process', {'concept': 'process'}] ['chromosomal replication initiation protein    HI0993', 'biological process', {'concept': 'process'}]
SELECT DISTINCT ?e WHERE { resource:2-succinylbenzoate-CoA_ligase____HI0194 property:biological_process ?e . ?e rdf:type ontology:process }
[]
Simple Question (Coreferenced)
USER
Yes
(Q23446545,P682,c(Q3249551))
['Q23446545', 'P682', {'concept': 'Q3249551'}]
['2-succinylbenzoate-CoA ligase    HI0194', 'biological process', {'concept': 'process'}]
[]
Q1057
SYSTEM
metabolic process
Q1057
(Q23446545,P682,c(Q3249551))
action filter_type
action find
entity Q23446545
relation P682
type Q3249551
That nutrient is involved in [ANSWER]
['Q23446545', 'P682', {'concept': 'Q3249551'}]
SELECT DISTINCT ?e WHERE { resource:Q23446545 property:P682 ?e . ?e rdf:type ontology:Q3249551 }
metabolic process
That nutrient is involved in metabolic process
metabolic process
action filter_type
action find
entity 2-succinylbenzoate-CoA ligase    HI0194
relation biological process
type process
['2-succinylbenzoate-CoA ligase    HI0194', 'biological process', {'concept': 'process'}]
SELECT DISTINCT ?e WHERE { resource:2-succinylbenzoate-CoA_ligase____HI0194 property:biological_process ?e . ?e rdf:type ontology:process }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q1057 Q21498576
P682
Q181394
USER
Is 4-hydroxy-2-oxoglutarate aldolase, mitochondrial involved in that process ?
(Q21498576,P682,Q1057)
action is_in
entity Q1057
action find
entity Q21498576
relation P682
['Q21498576', 'P682', 'Q1057']
ASK WHERE { resource:Q21498576 property:P682 resource:Q1057 }
metabolic process 4-hydroxy-2-oxoglutarate aldolase, mitochondrial
action is_in
entity metabolic process
action find
entity 4-hydroxy-2-oxoglutarate aldolase, mitochondrial
relation biological process
['4-hydroxy-2-oxoglutarate aldolase, mitochondrial', 'biological process', 'metabolic process']
ASK WHERE { resource:4-hydroxy-2-oxoglutarate_aldolase,_mitochondrial property:biological_process resource:metabolic_process }
[]
nutrient
SYSTEM
YES
(Q21498576,P682,Q1057)
action is_in
entity Q1057
action find
entity Q21498576
relation P682
[ANSWER]
['Q21498576', 'P682', 'Q1057']
ASK WHERE { resource:Q21498576 property:P682 resource:Q1057 }
Yes
action is_in
entity metabolic process
action find
entity 4-hydroxy-2-oxoglutarate aldolase, mitochondrial
relation biological process
['4-hydroxy-2-oxoglutarate aldolase, mitochondrial', 'biological process', 'metabolic process']
ASK WHERE { resource:4-hydroxy-2-oxoglutarate_aldolase,_mitochondrial property:biological_process resource:metabolic_process }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Single entity type
Q21057310
P828
Q21073024 Q3249551
USER
How many flammable solids leads to around the same number of processes as cadmium dust ?
(c(Q3249551),P828,c(Q21073024))
action count
action approx
action find_reverse_tuple_counts
relation P828
type Q21073024
type Q3249551
action count
action filter_type
action find
entity Q21057310
relation P828
type Q21073024
[{'concept': 'Q3249551'}, 'P828', {'concept': 'Q21073024'}]
SELECT DISTINCT ( COUNT ( ?u ) AS ?o ) WHERE { { SELECT DISTINCT ?u ( COUNT ( ?y ) AS ?f ) WHERE { ?y property:P828 ?u . ?u rdf:type ontology:Q21073024 . ?y rdf:type ontology:Q3249551 } GROUP BY ?u } . { SELECT DISTINCT ( COUNT ( ?n ) AS ?b ) WHERE { resource:Q21057310 property:P828 ?n . ?n rdf:type ontology:Q21073024 } } . FILTER ( ?f = ?b ) }
cadmium dust
action count
action approx
action find_reverse_tuple_counts
relation has cause
type flammable solid
type process
action count
action filter_type
action find
entity cadmium dust
relation has cause
type flammable solid
[{'concept': 'process'}, 'has cause', {'concept': 'flammable solid'}]
SELECT DISTINCT ( COUNT ( ?u ) AS ?o ) WHERE { { SELECT DISTINCT ?u ( COUNT ( ?y ) AS ?f ) WHERE { ?y property:has_cause ?u . ?u rdf:type ontology:flammable_solid . ?y rdf:type ontology:process } GROUP BY ?u } . { SELECT DISTINCT ( COUNT ( ?n ) AS ?b ) WHERE { resource:cadmium_dust property:has_cause ?n . ?n rdf:type ontology:flammable_solid } } . FILTER ( ?f = ?b ) }
[]
flammable solid process
SYSTEM
14
Q1119 Q20966901 Q21057310 Q419164 Q1087 Q79583 Q1038 Q21060492 Q1123 Q412265 Q1053 Q20964088 Q670 Q743
(c(Q3249551),P828,c(Q21073024))
action count
action approx
action find_reverse_tuple_counts
relation P828
type Q21073024
type Q3249551
action count
action filter_type
action find
entity Q21057310
relation P828
type Q21073024
[ANSWER]
[{'concept': 'Q3249551'}, 'P828', {'concept': 'Q21073024'}]
SELECT DISTINCT ( COUNT ( ?u ) AS ?o ) WHERE { { SELECT DISTINCT ?u ( COUNT ( ?y ) AS ?f ) WHERE { ?y property:P828 ?u . ?u rdf:type ontology:Q21073024 . ?y rdf:type ontology:Q3249551 } GROUP BY ?u } . { SELECT DISTINCT ( COUNT ( ?n ) AS ?b ) WHERE { resource:Q21057310 property:P828 ?n . ?n rdf:type ontology:Q21073024 } } . FILTER ( ?f = ?b ) }
hafnium Ferrovanadium cadmium dust Hydroquinone rhodium lithium hydride zirconium arsenic atom tantalum diphenylamine molybdenum atom insoluble uranium compounds silicon tungsten
14
action count
action approx
action find_reverse_tuple_counts
relation has cause
type flammable solid
type process
action count
action filter_type
action find
entity cadmium dust
relation has cause
type flammable solid
[{'concept': 'process'}, 'has cause', {'concept': 'flammable solid'}]
SELECT DISTINCT ( COUNT ( ?u ) AS ?o ) WHERE { { SELECT DISTINCT ?u ( COUNT ( ?y ) AS ?f ) WHERE { ?y property:has_cause ?u . ?u rdf:type ontology:flammable_solid . ?y rdf:type ontology:process } GROUP BY ?u } . { SELECT DISTINCT ( COUNT ( ?n ) AS ?b ) WHERE { resource:cadmium_dust property:has_cause ?n . ?n rdf:type ontology:flammable_solid } } . FILTER ( ?f = ?b ) }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Single entity type|Incomplete
Q21060492
P828
Q21073024 Q3249551
USER
And how about arsenic atom?
(c(Q3249551),P828,c(Q21073024))
action count
action approx
action find_reverse_tuple_counts
relation P828
type Q21073024
type Q3249551
action count
action filter_type
action find
entity Q21060492
relation P828
type Q21073024
[{'concept': 'Q3249551'}, 'P828', {'concept': 'Q21073024'}]
SELECT DISTINCT ( COUNT ( ?h ) AS ?z ) WHERE { { SELECT DISTINCT ( COUNT ( ?q ) AS ?g ) WHERE { ?q rdf:type ontology:Q21073024 . resource:Q21060492 property:P828 ?q } } . FILTER ( ?i = ?g ) . { SELECT DISTINCT ?h ( COUNT ( ?y ) AS ?i ) WHERE { ?y property:P828 ?h . ?h rdf:type ontology:Q21073024 . ?y rdf:type ontology:Q3249551 } GROUP BY ?h } }
arsenic atom
action count
action approx
action find_reverse_tuple_counts
relation has cause
type flammable solid
type process
action count
action filter_type
action find
entity arsenic atom
relation has cause
type flammable solid
[{'concept': 'process'}, 'has cause', {'concept': 'flammable solid'}]
SELECT DISTINCT ( COUNT ( ?h ) AS ?z ) WHERE { { SELECT DISTINCT ( COUNT ( ?q ) AS ?g ) WHERE { ?q rdf:type ontology:flammable_solid . resource:arsenic_atom property:has_cause ?q } } . FILTER ( ?i = ?g ) . { SELECT DISTINCT ?h ( COUNT ( ?y ) AS ?i ) WHERE { ?y property:has_cause ?h . ?h rdf:type ontology:flammable_solid . ?y rdf:type ontology:process } GROUP BY ?h } }
[]
flammable solid process
SYSTEM
14
Q1119 Q20966901 Q21057310 Q419164 Q1087 Q79583 Q1038 Q21060492 Q1123 Q412265 Q1053 Q20964088 Q670 Q743
(c(Q3249551),P828,c(Q21073024))
action count
action approx
action find_reverse_tuple_counts
relation P828
type Q21073024
type Q3249551
action count
action filter_type
action find
entity Q21060492
relation P828
type Q21073024
[ANSWER]
[{'concept': 'Q3249551'}, 'P828', {'concept': 'Q21073024'}]
SELECT DISTINCT ( COUNT ( ?h ) AS ?z ) WHERE { { SELECT DISTINCT ( COUNT ( ?q ) AS ?g ) WHERE { ?q rdf:type ontology:Q21073024 . resource:Q21060492 property:P828 ?q } } . FILTER ( ?i = ?g ) . { SELECT DISTINCT ?h ( COUNT ( ?y ) AS ?i ) WHERE { ?y property:P828 ?h . ?h rdf:type ontology:Q21073024 . ?y rdf:type ontology:Q3249551 } GROUP BY ?h } }
hafnium Ferrovanadium cadmium dust Hydroquinone rhodium lithium hydride zirconium arsenic atom tantalum diphenylamine molybdenum atom insoluble uranium compounds silicon tungsten
14
action count
action approx
action find_reverse_tuple_counts
relation has cause
type flammable solid
type process
action count
action filter_type
action find
entity arsenic atom
relation has cause
type flammable solid
[{'concept': 'process'}, 'has cause', {'concept': 'flammable solid'}]
SELECT DISTINCT ( COUNT ( ?h ) AS ?z ) WHERE { { SELECT DISTINCT ( COUNT ( ?q ) AS ?g ) WHERE { ?q rdf:type ontology:flammable_solid . resource:arsenic_atom property:has_cause ?q } } . FILTER ( ?i = ?g ) . { SELECT DISTINCT ?h ( COUNT ( ?y ) AS ?i ) WHERE { ?y property:has_cause ?h . ?h rdf:type ontology:flammable_solid . ?y rdf:type ontology:process } GROUP BY ?h } }
[]