Simple Question (Direct)
Simple Question
Q21633146
P703
Q16521
USER
Which taxon is recombination protein RecB    HP1553 found in ?
(Q21633146,P703,c(Q16521))
action filter_type
action find
entity Q21633146
relation P703
type Q16521
['Q21633146', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?k WHERE { resource:Q21633146 property:P703 ?k . ?k rdf:type ontology:Q16521 }
recombination protein RecB    HP1553
action filter_type
action find
entity recombination protein RecB    HP1553
relation found in taxon
type taxon
['recombination protein RecB    HP1553', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?k WHERE { resource:recombination_protein_RecB____HP1553 property:found_in_taxon ?k . ?k rdf:type ontology:taxon }
[]
taxon
Q21065231
SYSTEM
Helicobacter pylori 26695
Q21065231
(Q21633146,P703,c(Q16521))
action filter_type
action find
entity Q21633146
relation P703
type Q16521
[ANSWER] is recombination protein RecB HP1553 found in
['Q21633146', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?k WHERE { resource:Q21633146 property:P703 ?k . ?k rdf:type ontology:Q16521 }
Helicobacter pylori 26695
Helicobacter pylori 26695 is recombination protein RecB HP1553 found in
Helicobacter pylori 26695
action filter_type
action find
entity recombination protein RecB    HP1553
relation found in taxon
type taxon
['recombination protein RecB    HP1553', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?k WHERE { resource:recombination_protein_RecB____HP1553 property:found_in_taxon ?k . ?k rdf:type ontology:taxon }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21633146
P688
Q863908
USER
What is the nucleic acid sequence that is encoded by recombination protein RecB    HP1553 ?
(c(Q863908),P688,Q21633146)
action filter_type
action find_reverse
entity Q21633146
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q21633146']
SELECT DISTINCT ?z WHERE { ?z rdf:type ontology:Q863908 . ?z property:P688 resource:Q21633146 }
recombination protein RecB    HP1553
action filter_type
action find_reverse
entity recombination protein RecB    HP1553
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'recombination protein RecB    HP1553']
SELECT DISTINCT ?z WHERE { ?z rdf:type ontology:nucleic_acid_sequence . ?z property:encodes resource:recombination_protein_RecB____HP1553 }
[]
nucleic acid sequence
Q21629554
SYSTEM
recombination protein RecB    HP1553
Q21629554
(c(Q863908),P688,Q21633146)
action filter_type
action find_reverse
entity Q21633146
relation P688
type Q863908
The nucleic acid sequence that is encoded by recombination protein RecB HP1553 is by recombination protein RecB HP1553
[{'concept': 'Q863908'}, 'P688', 'Q21633146']
SELECT DISTINCT ?z WHERE { ?z rdf:type ontology:Q863908 . ?z property:P688 resource:Q21633146 }
recombination protein RecB    HP1553
The nucleic acid sequence that is encoded by recombination protein RecB HP1553 is by recombination protein RecB HP1553
recombination protein RecB    HP1553
action filter_type
action find_reverse
entity recombination protein RecB    HP1553
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'recombination protein RecB    HP1553']
SELECT DISTINCT ?z WHERE { ?z rdf:type ontology:nucleic_acid_sequence . ?z property:encodes resource:recombination_protein_RecB____HP1553 }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21629554
P702
Q181394
USER
What is the gene that is encoded by that nucleic acid sequence ?
(c(Q181394),P702,Q21629554)
action filter_type
action find_reverse
entity Q21629554
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q21629554']
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:Q181394 . ?u property:P702 resource:Q21629554 }
recombination protein RecB    HP1553
action filter_type
action find_reverse
entity recombination protein RecB    HP1553
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'recombination protein RecB    HP1553']
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:nutrient . ?u property:encoded_by resource:recombination_protein_RecB____HP1553 }
[]
nutrient
Q21633146
SYSTEM
recombination protein RecB    HP1553
Q21633146
(c(Q181394),P702,Q21629554)
action filter_type
action find_reverse
entity Q21629554
relation P702
type Q181394
The gene that is encoded by that nucleic acid sequence is recombination protein RecB HP1553
[{'concept': 'Q181394'}, 'P702', 'Q21629554']
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:Q181394 . ?u property:P702 resource:Q21629554 }
recombination protein RecB    HP1553
The gene that is encoded by that nucleic acid sequence is recombination protein RecB HP1553
recombination protein RecB    HP1553
action filter_type
action find_reverse
entity recombination protein RecB    HP1553
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'recombination protein RecB    HP1553']
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:nutrient . ?u property:encoded_by resource:recombination_protein_RecB____HP1553 }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q181394 Q8386 Q181394
USER
How many nutrients do atleast 26 drugs and nutrients collaborate with ?
(c(Q8386)|c(Q181394),P129,c(Q181394))
action count
action atleast
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
value 26
[[{'concept': 'Q8386'}, {'concept': 'Q181394'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?g ) AS ?l ) WHERE { { SELECT DISTINCT ?g ( COUNT ( ?f ) AS ?u ) WHERE { { ?f property:P129 ?g . ?g rdf:type ontology:Q181394 . ?f rdf:type ontology:Q8386 } UNION { ?f property:P129 ?g . ?g rdf:type ontology:Q181394 . ?f rdf:type ontology:Q181394 } } GROUP BY ?g } . FILTER ( ?u >= 26 ) }
action count
action atleast
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
value 26
[[{'concept': 'drug'}, {'concept': 'nutrient'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?g ) AS ?l ) WHERE { { SELECT DISTINCT ?g ( COUNT ( ?f ) AS ?u ) WHERE { { ?f property:physically_interacts_with ?g . ?g rdf:type ontology:nutrient . ?f rdf:type ontology:drug } UNION { ?f property:physically_interacts_with ?g . ?g rdf:type ontology:nutrient . ?f rdf:type ontology:nutrient } } GROUP BY ?g } . FILTER ( ?u >= 26 ) }
[]
nutrient drug nutrient
SYSTEM
10
Q7050954 Q309513 Q287961 Q410142 Q21110872 Q21108118 Q21115046 Q21115043 Q1949517 Q2034004
(c(Q8386)|c(Q181394),P129,c(Q181394))
action count
action atleast
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
value 26
[ANSWER]
[[{'concept': 'Q8386'}, {'concept': 'Q181394'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?g ) AS ?l ) WHERE { { SELECT DISTINCT ?g ( COUNT ( ?f ) AS ?u ) WHERE { { ?f property:P129 ?g . ?g rdf:type ontology:Q181394 . ?f rdf:type ontology:Q8386 } UNION { ?f property:P129 ?g . ?g rdf:type ontology:Q181394 . ?f rdf:type ontology:Q181394 } } GROUP BY ?g } . FILTER ( ?u >= 26 ) }
Sodium-dependent noradrenaline transporter Histamine H1 receptor Beta-2 adrenergic receptor Sodium-dependent serotonin transporter D(3) dopamine receptor 5-hydroxytryptamine receptor 2C 5-hydroxytryptamine receptor 1D 5-hydroxytryptamine receptor 1A 5-hydroxytryptamine receptor 2A D(2) dopamine receptor
10
action count
action atleast
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
value 26
[[{'concept': 'drug'}, {'concept': 'nutrient'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?g ) AS ?l ) WHERE { { SELECT DISTINCT ?g ( COUNT ( ?f ) AS ?u ) WHERE { { ?f property:physically_interacts_with ?g . ?g rdf:type ontology:nutrient . ?f rdf:type ontology:drug } UNION { ?f property:physically_interacts_with ?g . ?g rdf:type ontology:nutrient . ?f rdf:type ontology:nutrient } } GROUP BY ?g } . FILTER ( ?u >= 26 ) }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q7862881
Q181394
USER
And how about U50488?
(Q7862881,P129,c(Q181394))
action filter_type
action find
entity Q7862881
relation P129
type Q181394
['Q7862881', 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?c WHERE { resource:Q7862881 property:P129 ?c . ?c rdf:type ontology:Q181394 }
U50488
action filter_type
action find
entity U50488
relation physically interacts with
type nutrient
['U50488', 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?c WHERE { resource:U50488 property:physically_interacts_with ?c . ?c rdf:type ontology:nutrient }
[]
nutrient
Q8083989 Q14900999
SYSTEM
Kappa-type opioid receptor, Kappa-type opioid receptor
Q8083989 Q14900999
(Q7862881,P129,c(Q181394))
action filter_type
action find
entity Q7862881
relation P129
type Q181394
[ANSWERS]
['Q7862881', 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?c WHERE { resource:Q7862881 property:P129 ?c . ?c rdf:type ontology:Q181394 }
Kappa-type opioid receptor Kappa-type opioid receptor
Kappa-type opioid receptor Kappa-type opioid receptor
action filter_type
action find
entity U50488
relation physically interacts with
type nutrient
['U50488', 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?c WHERE { resource:U50488 property:physically_interacts_with ?c . ?c rdf:type ontology:nutrient }
[]
Verification (Boolean) (All)
Verification|one entity, multiple entities (as object) referred indirectly
Q2993328
P129
Q79529
USER
Does Beta-endorphin can communicate with those nutrients ?
(Q2993328,P129,Q8083989) (Q2993328,P129,Q14900999)
action is_in
entity prev_answer
action find
entity Q2993328
relation P129
['Q2993328', 'P129', 'Q8083989'] ['Q2993328', 'P129', 'Q14900999']
ASK WHERE { VALUES ( ?r ) { ( resource:Q8083989 ) ( resource:Q14900999 ) } . resource:Q2993328 property:P129 ?r }
Beta-endorphin
action is_in
entity prev_answer
action find
entity Beta-endorphin
relation physically interacts with
['Beta-endorphin', 'physically interacts with', 'Kappa-type opioid receptor'] ['Beta-endorphin', 'physically interacts with', 'Kappa-type opioid receptor']
ASK WHERE { VALUES ( ?r ) { ( resource:Kappa-type_opioid_receptor ) ( resource:Kappa-type_opioid_receptor ) } . resource:Beta-endorphin property:physically_interacts_with ?r }
[]
chemical substance
SYSTEM
YES
(Q2993328,P129,Q8083989) (Q2993328,P129,Q14900999)
action is_in
entity prev_answer
action find
entity Q2993328
relation P129
[ANSWER]
['Q2993328', 'P129', 'Q8083989'] ['Q2993328', 'P129', 'Q14900999']
ASK WHERE { VALUES ( ?r ) { ( resource:Q8083989 ) ( resource:Q14900999 ) } . resource:Q2993328 property:P129 ?r }
Yes
action is_in
entity prev_answer
action find
entity Beta-endorphin
relation physically interacts with
['Beta-endorphin', 'physically interacts with', 'Kappa-type opioid receptor'] ['Beta-endorphin', 'physically interacts with', 'Kappa-type opioid receptor']
ASK WHERE { VALUES ( ?r ) { ( resource:Kappa-type_opioid_receptor ) ( resource:Kappa-type_opioid_receptor ) } . resource:Beta-endorphin property:physically_interacts_with ?r }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q8083989
P681
Q5058355
USER
Which is the cell component of Kappa-type opioid receptor ?
(Q8083989,P681,c(Q5058355))
action filter_type
action find
entity Q8083989
relation P681
type Q5058355
['Q8083989', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?t WHERE { resource:Q8083989 property:P681 ?t . ?t rdf:type ontology:Q5058355 }
Kappa-type opioid receptor
action filter_type
action find
entity Kappa-type opioid receptor
relation cell component
type cellular component
['Kappa-type opioid receptor', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?t WHERE { resource:Kappa-type_opioid_receptor property:cell_component ?t . ?t rdf:type ontology:cellular_component }
[]
cellular component
Q29548
SYSTEM
plasma membrane
Q29548
(Q8083989,P681,c(Q5058355))
action filter_type
action find
entity Q8083989
relation P681
type Q5058355
[ANSWER] is the cell component of Kappa-type opioid receptor
['Q8083989', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?t WHERE { resource:Q8083989 property:P681 ?t . ?t rdf:type ontology:Q5058355 }
plasma membrane
Plasma membrane is the cell component of Kappa-type opioid receptor
plasma membrane
action filter_type
action find
entity Kappa-type opioid receptor
relation cell component
type cellular component
['Kappa-type opioid receptor', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?t WHERE { resource:Kappa-type_opioid_receptor property:cell_component ?t . ?t rdf:type ontology:cellular_component }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q8083989
P682
Q2996394
USER
Which biological processes are that nutrient involved in ?
(Q29548,P682,c(Q2996394))
action filter_type
action find
entity Q8083989
relation P682
type Q2996394
['Q29548', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?p WHERE { ?p rdf:type ontology:Q2996394 . resource:Q8083989 property:P682 ?p }
Kappa-type opioid receptor
action filter_type
action find
entity Kappa-type opioid receptor
relation biological process
type biological process
['plasma membrane', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?p WHERE { ?p rdf:type ontology:biological_process . resource:Kappa-type_opioid_receptor property:biological_process ?p }
[]
biological process
Q14599729 Q1612119 Q14645719
SYSTEM
response to estrogen, immune response, locomotory behavior
Q14599729 Q1612119 Q14645719
(Q29548,P682,c(Q2996394))
action filter_type
action find
entity Q8083989
relation P682
type Q2996394
That nutrient are in [ANSWERS]
['Q29548', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?p WHERE { ?p rdf:type ontology:Q2996394 . resource:Q8083989 property:P682 ?p }
response to estrogen immune response locomotory behavior
That nutrient are in response to estrogen, immune response and locomotory behavior
response to estrogen immune response locomotory behavior
action filter_type
action find
entity Kappa-type opioid receptor
relation biological process
type biological process
['plasma membrane', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?p WHERE { ?p rdf:type ontology:biological_process . resource:Kappa-type_opioid_receptor property:biological_process ?p }
[]