Simple Question (Direct)
Simple Question
Q23445115
P703
Q631147
USER
Which infraspecific name is xylulose kinase    HI1113 found in ?
(Q23445115,P703,c(Q631147))
action filter_type
action find
entity Q23445115
relation P703
type Q631147
['Q23445115', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?h WHERE { resource:Q23445115 property:P703 ?h . ?h rdf:type ontology:Q631147 }
xylulose kinase    HI1113
action filter_type
action find
entity xylulose kinase    HI1113
relation found in taxon
type infraspecific name
['xylulose kinase    HI1113', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?h WHERE { resource:xylulose_kinase____HI1113 property:found_in_taxon ?h . ?h rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102948
SYSTEM
Haemophilus influenzae Rd KW20
Q21102948
(Q23445115,P703,c(Q631147))
action filter_type
action find
entity Q23445115
relation P703
type Q631147
[ANSWER] is xylulose kinase HI1113 found in
['Q23445115', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?h WHERE { resource:Q23445115 property:P703 ?h . ?h rdf:type ontology:Q631147 }
Haemophilus influenzae Rd KW20
Haemophilus influenzae Rd KW20 is xylulose kinase HI1113 found in
Haemophilus influenzae Rd KW20
action filter_type
action find
entity xylulose kinase    HI1113
relation found in taxon
type infraspecific name
['xylulose kinase    HI1113', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?h WHERE { resource:xylulose_kinase____HI1113 property:found_in_taxon ?h . ?h rdf:type ontology:infraspecific_name }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23445115
P682
Q1057
USER
Which metabolic process is that nutrient involved in ?
(Q21102948,P682,c(Q1057))
action filter_type
action find
entity Q23445115
relation P682
type Q1057
['Q21102948', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?m WHERE { resource:Q23445115 property:P682 ?m . ?m rdf:type ontology:Q1057 }
xylulose kinase    HI1113
action filter_type
action find
entity xylulose kinase    HI1113
relation biological process
type metabolic process
['Haemophilus influenzae Rd KW20', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?m WHERE { resource:xylulose_kinase____HI1113 property:biological_process ?m . ?m rdf:type ontology:metabolic_process }
[]
metabolic process
Q14762260
SYSTEM
carbohydrate metabolic process
Q14762260
(Q21102948,P682,c(Q1057))
action filter_type
action find
entity Q23445115
relation P682
type Q1057
That nutrient is the [ANSWER]
['Q21102948', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?m WHERE { resource:Q23445115 property:P682 ?m . ?m rdf:type ontology:Q1057 }
carbohydrate metabolic process
That nutrient is the carbohydrate metabolic process
carbohydrate metabolic process
action filter_type
action find
entity xylulose kinase    HI1113
relation biological process
type metabolic process
['Haemophilus influenzae Rd KW20', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?m WHERE { resource:xylulose_kinase____HI1113 property:biological_process ?m . ?m rdf:type ontology:metabolic_process }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23445115
P688
Q863908
USER
Which nucleic acid sequence encodes xylulose kinase    HI1113 ?
(c(Q863908),P688,Q23445115)
action filter_type
action find_reverse
entity Q23445115
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q23445115']
SELECT DISTINCT ?z WHERE { ?z property:P688 resource:Q23445115 . ?z rdf:type ontology:Q863908 }
xylulose kinase    HI1113
action filter_type
action find_reverse
entity xylulose kinase    HI1113
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'xylulose kinase    HI1113']
SELECT DISTINCT ?z WHERE { ?z property:encodes resource:xylulose_kinase____HI1113 . ?z rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23326891
SYSTEM
xylulose kinase    HI1113
Q23326891
(c(Q863908),P688,Q23445115)
action filter_type
action find_reverse
entity Q23445115
relation P688
type Q863908
Xylulose kinase HI1113 encodes xylulose kinase HI1113
[{'concept': 'Q863908'}, 'P688', 'Q23445115']
SELECT DISTINCT ?z WHERE { ?z property:P688 resource:Q23445115 . ?z rdf:type ontology:Q863908 }
xylulose kinase    HI1113
Xylulose kinase HI1113 encodes xylulose kinase HI1113
xylulose kinase    HI1113
action filter_type
action find_reverse
entity xylulose kinase    HI1113
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'xylulose kinase    HI1113']
SELECT DISTINCT ?z WHERE { ?z property:encodes resource:xylulose_kinase____HI1113 . ?z rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23445115
P702
Q863908
USER
Which nucleic acid sequence encodes xylulose kinase    HI1113 ?
(Q23445115,P702,c(Q863908))
action filter_type
action find
entity Q23445115
relation P702
type Q863908
['Q23445115', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?l WHERE { resource:Q23445115 property:P702 ?l . ?l rdf:type ontology:Q863908 }
xylulose kinase    HI1113
action filter_type
action find
entity xylulose kinase    HI1113
relation encoded by
type nucleic acid sequence
['xylulose kinase    HI1113', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?l WHERE { resource:xylulose_kinase____HI1113 property:encoded_by ?l . ?l rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23326891
SYSTEM
xylulose kinase    HI1113
Q23326891
(Q23445115,P702,c(Q863908))
action filter_type
action find
entity Q23445115
relation P702
type Q863908
Xylulose kinase HI1113 encodes xylulose kinase HI1113
['Q23445115', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?l WHERE { resource:Q23445115 property:P702 ?l . ?l rdf:type ontology:Q863908 }
xylulose kinase    HI1113
Xylulose kinase HI1113 encodes xylulose kinase HI1113
xylulose kinase    HI1113
action filter_type
action find
entity xylulose kinase    HI1113
relation encoded by
type nucleic acid sequence
['xylulose kinase    HI1113', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?l WHERE { resource:xylulose_kinase____HI1113 property:encoded_by ?l . ?l rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q23429267
Q863908
USER
And how about hypothetical protein    AHA_1237?
(Q23429267,P702,c(Q863908))
action filter_type
action find
entity Q23429267
relation P702
type Q863908
['Q23429267', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?g WHERE { resource:Q23429267 property:P702 ?g . ?g rdf:type ontology:Q863908 }
hypothetical protein    AHA_1237
action filter_type
action find
entity hypothetical protein    AHA_1237
relation encoded by
type nucleic acid sequence
['hypothetical protein    AHA_1237', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?g WHERE { resource:hypothetical_protein____AHA_1237 property:encoded_by ?g . ?g rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23116124
SYSTEM
hypothetical protein    AHA_1237
Q23116124
(Q23429267,P702,c(Q863908))
action filter_type
action find
entity Q23429267
relation P702
type Q863908
[ANSWER]
['Q23429267', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?g WHERE { resource:Q23429267 property:P702 ?g . ?g rdf:type ontology:Q863908 }
hypothetical protein    AHA_1237
hypothetical protein    AHA_1237
action filter_type
action find
entity hypothetical protein    AHA_1237
relation encoded by
type nucleic acid sequence
['hypothetical protein    AHA_1237', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?g WHERE { resource:hypothetical_protein____AHA_1237 property:encoded_by ?g . ?g rdf:type ontology:nucleic_acid_sequence }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type|Indirect
P702
Q181394
USER
How many nutrients are the gene that are encoded by that nucleic acid sequence ?
(c(Q181394),P702,Q23116124)
action count
action filter_type
action find_reverse
entity Q23116124
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q23116124']
SELECT DISTINCT ( COUNT ( ?f ) AS ?d ) WHERE { ?f property:P702 resource:Q23116124 . ?f rdf:type ontology:Q181394 }
action count
action filter_type
action find_reverse
entity hypothetical protein    AHA_1237
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'hypothetical protein    AHA_1237']
SELECT DISTINCT ( COUNT ( ?f ) AS ?d ) WHERE { ?f property:encoded_by resource:hypothetical_protein____AHA_1237 . ?f rdf:type ontology:nutrient }
[]
nutrient
SYSTEM
1
Q23429267
(c(Q181394),P702,Q23116124)
action count
action filter_type
action find_reverse
entity Q23116124
relation P702
type Q181394
[ANSWER]
[{'concept': 'Q181394'}, 'P702', 'Q23116124']
SELECT DISTINCT ( COUNT ( ?f ) AS ?d ) WHERE { ?f property:P702 resource:Q23116124 . ?f rdf:type ontology:Q181394 }
hypothetical protein    AHA_1237
1
action count
action filter_type
action find_reverse
entity hypothetical protein    AHA_1237
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'hypothetical protein    AHA_1237']
SELECT DISTINCT ( COUNT ( ?f ) AS ?d ) WHERE { ?f property:encoded_by resource:hypothetical_protein____AHA_1237 . ?f rdf:type ontology:nutrient }
[]
Quantitative Reasoning (Count) (All)
Incomplete count-based ques
Q23407098
Q181394
USER
And what about FAD-dependent oxidoreductase    CLC_1120?
(Q23407098,P688,c(Q181394))
action count
action filter_type
action find
entity Q23407098
relation P688
type Q181394
['Q23407098', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?a ) AS ?v ) WHERE { resource:Q23407098 property:P688 ?a . ?a rdf:type ontology:Q181394 }
FAD-dependent oxidoreductase    CLC_1120
action count
action filter_type
action find
entity FAD-dependent oxidoreductase    CLC_1120
relation encodes
type nutrient
['FAD-dependent oxidoreductase    CLC_1120', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?a ) AS ?v ) WHERE { resource:FAD-dependent_oxidoreductase____CLC_1120 property:encodes ?a . ?a rdf:type ontology:nutrient }
[]
nutrient
SYSTEM
1
(Q23407098,P688,c(Q181394))
action count
action filter_type
action find
entity Q23407098
relation P688
type Q181394
[ANSWER]
['Q23407098', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?a ) AS ?v ) WHERE { resource:Q23407098 property:P688 ?a . ?a rdf:type ontology:Q181394 }
1
action count
action filter_type
action find
entity FAD-dependent oxidoreductase    CLC_1120
relation encodes
type nutrient
['FAD-dependent oxidoreductase    CLC_1120', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?a ) AS ?v ) WHERE { resource:FAD-dependent_oxidoreductase____CLC_1120 property:encodes ?a . ?a rdf:type ontology:nutrient }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q22332323
Q181394
USER
And what about ATP-dependent DNA helicase RecG    lpg2033?
(Q22332323,P688,c(Q181394))
action filter_type
action find
entity Q22332323
relation P688
type Q181394
['Q22332323', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?n WHERE { resource:Q22332323 property:P688 ?n . ?n rdf:type ontology:Q181394 }
ATP-dependent DNA helicase RecG    lpg2033
action filter_type
action find
entity ATP-dependent DNA helicase RecG    lpg2033
relation encodes
type nutrient
['ATP-dependent DNA helicase RecG    lpg2033', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?n WHERE { resource:ATP-dependent_DNA_helicase_RecG____lpg2033 property:encodes ?n . ?n rdf:type ontology:nutrient }
[]
nutrient
Q22335489
SYSTEM
ATP-dependent DNA helicase RecG    lpg2033
Q22335489
(Q22332323,P688,c(Q181394))
action filter_type
action find
entity Q22332323
relation P688
type Q181394
[ANSWER]
['Q22332323', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?n WHERE { resource:Q22332323 property:P688 ?n . ?n rdf:type ontology:Q181394 }
ATP-dependent DNA helicase RecG    lpg2033
ATP-dependent DNA helicase RecG    lpg2033
action filter_type
action find
entity ATP-dependent DNA helicase RecG    lpg2033
relation encodes
type nutrient
['ATP-dependent DNA helicase RecG    lpg2033', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?n WHERE { resource:ATP-dependent_DNA_helicase_RecG____lpg2033 property:encodes ?n . ?n rdf:type ontology:nutrient }
[]