Simple Question (Direct)
Simple Question
Q21173118
P680
Q44424
USER
Which the chemical bonds that represents the molecular function of crossover junction endodeoxyribonuclease RuvC    CTL0764 ?
(Q21173118,P680,c(Q44424))
action filter_type
action find
entity Q21173118
relation P680
type Q44424
['Q21173118', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?v WHERE { resource:Q21173118 property:P680 ?v . ?v rdf:type ontology:Q44424 }
crossover junction endodeoxyribonuclease RuvC    CTL0764
action filter_type
action find
entity crossover junction endodeoxyribonuclease RuvC    CTL0764
relation molecular function
type chemical bond
['crossover junction endodeoxyribonuclease RuvC    CTL0764', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?v WHERE { resource:crossover_junction_endodeoxyribonuclease_RuvC____CTL0764 property:molecular_function ?v . ?v rdf:type ontology:chemical_bond }
[]
chemical bond
Q14860850 Q13667380
SYSTEM
magnesium ion binding, metal ion binding
Q14860850 Q13667380
(Q21173118,P680,c(Q44424))
action filter_type
action find
entity Q21173118
relation P680
type Q44424
Represents and [ANSWERS]
['Q21173118', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?v WHERE { resource:Q21173118 property:P680 ?v . ?v rdf:type ontology:Q44424 }
magnesium ion binding metal ion binding
Represents and magnesium ion binding and metal ion binding
magnesium ion binding metal ion binding
action filter_type
action find
entity crossover junction endodeoxyribonuclease RuvC    CTL0764
relation molecular function
type chemical bond
['crossover junction endodeoxyribonuclease RuvC    CTL0764', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?v WHERE { resource:crossover_junction_endodeoxyribonuclease_RuvC____CTL0764 property:molecular_function ?v . ?v rdf:type ontology:chemical_bond }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21173118
P702
Q863908
USER
What is the gene that encodes that nutrient ?
(Q14860850,P702,c(Q863908)) (Q13667380,P702,c(Q863908))
action filter_type
action find
entity Q21173118
relation P702
type Q863908
['Q14860850', 'P702', {'concept': 'Q863908'}] ['Q13667380', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?a WHERE { resource:Q21173118 property:P702 ?a . ?a rdf:type ontology:Q863908 }
crossover junction endodeoxyribonuclease RuvC    CTL0764
action filter_type
action find
entity crossover junction endodeoxyribonuclease RuvC    CTL0764
relation encoded by
type nucleic acid sequence
['magnesium ion binding', 'encoded by', {'concept': 'nucleic acid sequence'}] ['metal ion binding', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?a WHERE { resource:crossover_junction_endodeoxyribonuclease_RuvC____CTL0764 property:encoded_by ?a . ?a rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q21280499
SYSTEM
crossover junction endodeoxyribonuclease RuvC    CTL0764
Q21280499
(Q14860850,P702,c(Q863908)) (Q13667380,P702,c(Q863908))
action filter_type
action find
entity Q21173118
relation P702
type Q863908
The gene that encodes that nutrient is the crossover junction endodeoxyribonuclease RuvC CTL0764
['Q14860850', 'P702', {'concept': 'Q863908'}] ['Q13667380', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?a WHERE { resource:Q21173118 property:P702 ?a . ?a rdf:type ontology:Q863908 }
crossover junction endodeoxyribonuclease RuvC    CTL0764
The gene that encodes that nutrient is the crossover junction endodeoxyribonuclease RuvC CTL0764
crossover junction endodeoxyribonuclease RuvC    CTL0764
action filter_type
action find
entity crossover junction endodeoxyribonuclease RuvC    CTL0764
relation encoded by
type nucleic acid sequence
['magnesium ion binding', 'encoded by', {'concept': 'nucleic acid sequence'}] ['metal ion binding', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?a WHERE { resource:crossover_junction_endodeoxyribonuclease_RuvC____CTL0764 property:encoded_by ?a . ?a rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21280499
P703
Q16521
USER
Which taxon is that nucleic acid sequence found in ?
(Q21280499,P703,c(Q16521))
action filter_type
action find
entity Q21280499
relation P703
type Q16521
['Q21280499', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?u WHERE { resource:Q21280499 property:P703 ?u . ?u rdf:type ontology:Q16521 }
crossover junction endodeoxyribonuclease RuvC    CTL0764
action filter_type
action find
entity crossover junction endodeoxyribonuclease RuvC    CTL0764
relation found in taxon
type taxon
['crossover junction endodeoxyribonuclease RuvC    CTL0764', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?u WHERE { resource:crossover_junction_endodeoxyribonuclease_RuvC____CTL0764 property:found_in_taxon ?u . ?u rdf:type ontology:taxon }
[]
taxon
Q20800254
SYSTEM
Chlamydia trachomatis 434/BU
Q20800254
(Q21280499,P703,c(Q16521))
action filter_type
action find
entity Q21280499
relation P703
type Q16521
That nucleic acid sequence is found in [ANSWER]
['Q21280499', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?u WHERE { resource:Q21280499 property:P703 ?u . ?u rdf:type ontology:Q16521 }
Chlamydia trachomatis 434/BU
That nucleic acid sequence is found in Chlamydia trachomatis 434/BU
Chlamydia trachomatis 434/BU
action filter_type
action find
entity crossover junction endodeoxyribonuclease RuvC    CTL0764
relation found in taxon
type taxon
['crossover junction endodeoxyribonuclease RuvC    CTL0764', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?u WHERE { resource:crossover_junction_endodeoxyribonuclease_RuvC____CTL0764 property:found_in_taxon ?u . ?u rdf:type ontology:taxon }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21280499
P688
Q181394
USER
Which nutrient is encoded by that nucleic acid sequence ?
(Q20800254,P688,c(Q181394))
action filter_type
action find
entity Q21280499
relation P688
type Q181394
['Q20800254', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?v WHERE { resource:Q21280499 property:P688 ?v . ?v rdf:type ontology:Q181394 }
crossover junction endodeoxyribonuclease RuvC    CTL0764
action filter_type
action find
entity crossover junction endodeoxyribonuclease RuvC    CTL0764
relation encodes
type nutrient
['Chlamydia trachomatis 434/BU', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?v WHERE { resource:crossover_junction_endodeoxyribonuclease_RuvC____CTL0764 property:encodes ?v . ?v rdf:type ontology:nutrient }
[]
nutrient
Q21173118
SYSTEM
crossover junction endodeoxyribonuclease RuvC    CTL0764
Q21173118
(Q20800254,P688,c(Q181394))
action filter_type
action find
entity Q21280499
relation P688
type Q181394
The crossover junction endodeoxyribonuclease RuvC CTL0764 is encoded by that nucleic acid sequence
['Q20800254', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?v WHERE { resource:Q21280499 property:P688 ?v . ?v rdf:type ontology:Q181394 }
crossover junction endodeoxyribonuclease RuvC    CTL0764
The crossover junction endodeoxyribonuclease RuvC CTL0764 is encoded by that nucleic acid sequence
crossover junction endodeoxyribonuclease RuvC    CTL0764
action filter_type
action find
entity crossover junction endodeoxyribonuclease RuvC    CTL0764
relation encodes
type nutrient
['Chlamydia trachomatis 434/BU', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?v WHERE { resource:crossover_junction_endodeoxyribonuclease_RuvC____CTL0764 property:encodes ?v . ?v rdf:type ontology:nutrient }
[]
Logical Reasoning (All)
Logical|Intersection|Multiple_Relation
Q13667380 Q21280499
P702 P680
Q181394
USER
Which nutrients are encoded by crossover junction endodeoxyribonuclease RuvC    CTL0764 and have the molecular function metal ion binding ?
AND((c(Q181394),P702,Q21280499), (c(Q181394),P680,Q13667380))
action filter_type
action intersection
action find_reverse
entity Q21280499
relation P702
action find_reverse
entity Q13667380
relation P680
type Q181394
{'AND': [[{'concept': 'Q181394'}, 'P702', 'Q21280499'], [{'concept': 'Q181394'}, 'P680', 'Q13667380']]}
SELECT DISTINCT ?t WHERE { ?t property:P702 resource:Q21280499 . ?t property:P680 resource:Q13667380 . ?t rdf:type ontology:Q181394 }
metal ion binding crossover junction endodeoxyribonuclease RuvC    CTL0764
action filter_type
action intersection
action find_reverse
entity crossover junction endodeoxyribonuclease RuvC    CTL0764
relation encoded by
action find_reverse
entity metal ion binding
relation molecular function
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'encoded by', 'crossover junction endodeoxyribonuclease RuvC    CTL0764'], [{'concept': 'nutrient'}, 'molecular function', 'metal ion binding']]}
SELECT DISTINCT ?t WHERE { ?t property:encoded_by resource:crossover_junction_endodeoxyribonuclease_RuvC____CTL0764 . ?t property:molecular_function resource:metal_ion_binding . ?t rdf:type ontology:nutrient }
[]
nutrient
Q21173118
SYSTEM
crossover junction endodeoxyribonuclease RuvC    CTL0764
Q21173118
AND((c(Q181394),P702,Q21280499), (c(Q181394),P680,Q13667380))
action filter_type
action intersection
action find_reverse
entity Q21280499
relation P702
action find_reverse
entity Q13667380
relation P680
type Q181394
Crossover junction endodeoxyribonuclease RuvC CTL0764 is encoded by crossover junction endodeoxyribonuclease RuvC CTL0764 and have the molecular function metal ion binding
{'AND': [[{'concept': 'Q181394'}, 'P702', 'Q21280499'], [{'concept': 'Q181394'}, 'P680', 'Q13667380']]}
SELECT DISTINCT ?t WHERE { ?t property:P702 resource:Q21280499 . ?t property:P680 resource:Q13667380 . ?t rdf:type ontology:Q181394 }
crossover junction endodeoxyribonuclease RuvC    CTL0764
Crossover junction endodeoxyribonuclease RuvC CTL0764 is encoded by crossover junction endodeoxyribonuclease RuvC CTL0764 and have the molecular function metal ion binding
crossover junction endodeoxyribonuclease RuvC    CTL0764
action filter_type
action intersection
action find_reverse
entity crossover junction endodeoxyribonuclease RuvC    CTL0764
relation encoded by
action find_reverse
entity metal ion binding
relation molecular function
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'encoded by', 'crossover junction endodeoxyribonuclease RuvC    CTL0764'], [{'concept': 'nutrient'}, 'molecular function', 'metal ion binding']]}
SELECT DISTINCT ?t WHERE { ?t property:encoded_by resource:crossover_junction_endodeoxyribonuclease_RuvC____CTL0764 . ?t property:molecular_function resource:metal_ion_binding . ?t rdf:type ontology:nutrient }
[]
Quantitative Reasoning (All)
Quantitative|Atleast/ Atmost/ Approx. the same/Equal|Single entity type
P682
Q1057 Q181394
USER
Which metabolic processes are a biological processes that atmost 9794 nutrients are involved in ?
(c(Q181394),P682,c(Q1057))
action atmost
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
value 9794
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?a WHERE { { SELECT DISTINCT ?a ( COUNT ( ?b ) AS ?c ) WHERE { ?b rdf:type ontology:Q181394 . ?a rdf:type ontology:Q1057 . ?b property:P682 ?a } GROUP BY ?a } . FILTER ( ?c <= 9794 ) }
action atmost
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
value 9794
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?a WHERE { { SELECT DISTINCT ?a ( COUNT ( ?b ) AS ?c ) WHERE { ?b rdf:type ontology:nutrient . ?a rdf:type ontology:metabolic_process . ?b property:biological_process ?a } GROUP BY ?a } . FILTER ( ?c <= 9794 ) }
[]
metabolic process nutrient
Q22251129 Q14905693 Q133895
SYSTEM
proteolysis in other organism, translational initiation, tricarboxylic acid cycle
Q14864889 Q14907628 Q14913194 Q22274727 Q22251129 Q14905693 Q14860777 Q21134382 Q21097138 Q14819379 Q21759902 Q21133617 Q133895 Q21157940 Q21116483 Q14863351 Q21102358 Q21114210 Q14907178 Q21121151 Q14880758 Q21761098 Q14762260 Q22275051 Q21100626 Q14913439 Q14916189 Q14349667 Q21159531 Q21111970 Q898365 Q22274640 Q22279483 Q21119973 Q14865941 Q22282595 Q14907180 Q14907181 Q14905125 Q21096256 Q14863432 Q14902250 Q21124879 Q14909347 Q15313450 Q179924 Q21101220 Q21095286 Q14863986 Q14358591 Q838181 Q21116485 Q14859896 Q21103172 Q22276072 Q14914233 Q14897831 Q14645736 Q14864262 Q14859628 Q14819787 Q21119193 Q22274791 Q14819781 Q22279537 Q22283508 Q14327719 Q22279533 Q21124620 Q14860507 Q21112195 Q14890104 Q14864417 Q14864414 Q21759328 Q900386 Q14912265 Q21760838
(c(Q181394),P682,c(Q1057))
action atmost
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
value 9794
[ANSWERS] are a biological processes that atmost 9794 nutrients are involved in
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?a WHERE { { SELECT DISTINCT ?a ( COUNT ( ?b ) AS ?c ) WHERE { ?b rdf:type ontology:Q181394 . ?a rdf:type ontology:Q1057 . ?b property:P682 ?a } GROUP BY ?a } . FILTER ( ?c <= 9794 ) }
cellular aromatic compound metabolic process multicellular organism metabolic process cellular ketone body metabolic process secondary metabolic process proteolysis in other organism translational initiation hormone biosynthetic process cofactor metabolic process cellular aldehyde metabolic process one-carbon metabolic process carbon fixation actin modification tricarboxylic acid cycle nitrobenzene metabolic process lymphotoxin A biosynthetic process signal transduction by protein phosphorylation sulfur compound metabolic process regulation of translational initiation by eIF2 alpha dephosphorylation interleukin-2 biosynthetic process reactive nitrogen species metabolic process nucleobase-containing compound metabolic process photosynthesis carbohydrate metabolic process halogenated hydrocarbon metabolic process peptidyl-lysine modification to peptidyl-hypusine organophosphate metabolic process organic acid metabolic process lipid metabolic process selenium compound metabolic process reactive oxygen species biosynthetic process glycosylation cellular biosynthetic process cellular macromolecule metabolic process oxygen metabolic process connective tissue growth factor biosynthetic process ketone body metabolic process interleukin-13 biosynthetic process granulocyte macrophage colony-stimulating factor biosynthetic process neurotransmitter metabolic process cellular carbohydrate metabolic process reactive oxygen species metabolic process telomere maintenance via semi-conservative replication interleukin-8 biosynthetic process flavonoid metabolic process methylation-dependent chromatin silencing bioluminescence wax biosynthetic process amyloid fibril formation hormone catabolic process xenobiotic metabolic process respiratory burst interleukin-6 biosynthetic process cellular amino acid metabolic process DNA protection glycosyl compound metabolic process phosphatidic acid metabolic process isotype switching thyroid hormone metabolic process protein metabolic process cellular lipid metabolic process peptide hormone processing cellular modified amino acid metabolic process organic cyclic compound metabolic process generation of precursor metabolites and energy viral RNA genome replication IRES-dependent viral translational initiation small molecule metabolic process transposon integration transposition, DNA-mediated receptor internalization patched ligand maturation toxin metabolic process heterocycle metabolic process drug metabolic process cellular catabolic process demethylation cellular ketone metabolic process phosphorus metabolic process
Proteolysis in other organism, translational initiation and tricarboxylic acid cycle are a biological processes that atmost 9794 nutrients are involved in
proteolysis in other organism translational initiation tricarboxylic acid cycle
action atmost
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
value 9794
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?a WHERE { { SELECT DISTINCT ?a ( COUNT ( ?b ) AS ?c ) WHERE { ?b rdf:type ontology:nutrient . ?a rdf:type ontology:metabolic_process . ?b property:biological_process ?a } GROUP BY ?a } . FILTER ( ?c <= 9794 ) }
[]