Simple Question (Direct)
Simple Question
Q23050544
P702
Q863908
USER
What is the gene that encodes 3-isopropylmalate dehydrogenase    RSP_0859 ?
(Q23050544,P702,c(Q863908))
action filter_type
action find
entity Q23050544
relation P702
type Q863908
['Q23050544', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:Q863908 . resource:Q23050544 property:P702 ?b }
3-isopropylmalate dehydrogenase    RSP_0859
action filter_type
action find
entity 3-isopropylmalate dehydrogenase    RSP_0859
relation encoded by
type nucleic acid sequence
['3-isopropylmalate dehydrogenase    RSP_0859', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:nucleic_acid_sequence . resource:3-isopropylmalate_dehydrogenase____RSP_0859 property:encoded_by ?b }
[]
nucleic acid sequence
Q23028266
SYSTEM
3-isopropylmalate dehydrogenase    RSP_0859
Q23028266
(Q23050544,P702,c(Q863908))
action filter_type
action find
entity Q23050544
relation P702
type Q863908
The gene that encodes 3-isopropylmalate dehydrogenase RSP_0859 is also 3-isopropylmalate dehydrogenase RSP 0859
['Q23050544', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:Q863908 . resource:Q23050544 property:P702 ?b }
3-isopropylmalate dehydrogenase    RSP_0859
The gene that encodes 3-isopropylmalate dehydrogenase RSP_0859 is also 3-isopropylmalate dehydrogenase RSP 0859
3-isopropylmalate dehydrogenase    RSP_0859
action filter_type
action find
entity 3-isopropylmalate dehydrogenase    RSP_0859
relation encoded by
type nucleic acid sequence
['3-isopropylmalate dehydrogenase    RSP_0859', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:nucleic_acid_sequence . resource:3-isopropylmalate_dehydrogenase____RSP_0859 property:encoded_by ?b }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23050544
P688
Q863908
USER
Which nucleic acid sequence encodes 3-isopropylmalate dehydrogenase    RSP_0859 ?
(c(Q863908),P688,Q23050544)
action filter_type
action find_reverse
entity Q23050544
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q23050544']
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:Q863908 . ?s property:P688 resource:Q23050544 }
3-isopropylmalate dehydrogenase    RSP_0859
action filter_type
action find_reverse
entity 3-isopropylmalate dehydrogenase    RSP_0859
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', '3-isopropylmalate dehydrogenase    RSP_0859']
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:nucleic_acid_sequence . ?s property:encodes resource:3-isopropylmalate_dehydrogenase____RSP_0859 }
[]
nucleic acid sequence
Q23028266
SYSTEM
3-isopropylmalate dehydrogenase    RSP_0859
Q23028266
(c(Q863908),P688,Q23050544)
action filter_type
action find_reverse
entity Q23050544
relation P688
type Q863908
3-isopropylmalate dehydrogenase RSP 0859 encodes 3-isopropylmalate dehydrogenase RSP_0859
[{'concept': 'Q863908'}, 'P688', 'Q23050544']
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:Q863908 . ?s property:P688 resource:Q23050544 }
3-isopropylmalate dehydrogenase    RSP_0859
3-isopropylmalate dehydrogenase RSP 0859 encodes 3-isopropylmalate dehydrogenase RSP_0859
3-isopropylmalate dehydrogenase    RSP_0859
action filter_type
action find_reverse
entity 3-isopropylmalate dehydrogenase    RSP_0859
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', '3-isopropylmalate dehydrogenase    RSP_0859']
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:nucleic_acid_sequence . ?s property:encodes resource:3-isopropylmalate_dehydrogenase____RSP_0859 }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23028266
P703
Q631147
USER
Which taxon does that nucleic acid sequence belong to ?
(Q23028266,P703,c(Q631147))
action filter_type
action find
entity Q23028266
relation P703
type Q631147
['Q23028266', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?w WHERE { resource:Q23028266 property:P703 ?w . ?w rdf:type ontology:Q631147 }
3-isopropylmalate dehydrogenase    RSP_0859
action filter_type
action find
entity 3-isopropylmalate dehydrogenase    RSP_0859
relation found in taxon
type infraspecific name
['3-isopropylmalate dehydrogenase    RSP_0859', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?w WHERE { resource:3-isopropylmalate_dehydrogenase____RSP_0859 property:found_in_taxon ?w . ?w rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102953
SYSTEM
Rhodobacter sphaeroides 2.4.1
Q21102953
(Q23028266,P703,c(Q631147))
action filter_type
action find
entity Q23028266
relation P703
type Q631147
That nucleic acid sequence belongs to [ANSWER]
['Q23028266', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?w WHERE { resource:Q23028266 property:P703 ?w . ?w rdf:type ontology:Q631147 }
Rhodobacter sphaeroides 2.4.1
That nucleic acid sequence belongs to Rhodobacter sphaeroides 2.4.1
Rhodobacter sphaeroides 2.4.1
action filter_type
action find
entity 3-isopropylmalate dehydrogenase    RSP_0859
relation found in taxon
type infraspecific name
['3-isopropylmalate dehydrogenase    RSP_0859', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?w WHERE { resource:3-isopropylmalate_dehydrogenase____RSP_0859 property:found_in_taxon ?w . ?w rdf:type ontology:infraspecific_name }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation|Incomplete
Q23245139 Q23028266
P703
Q631147
USER
Or hypothetical protein    NCgl0226?
OR((Q23028266,P703,c(Q631147)), (Q23245139,P703,c(Q631147)))
action filter_type
action union
action find
entity Q23028266
relation P703
action find
entity Q23245139
relation P703
type Q631147
{'OR': [['Q23028266', 'P703', {'concept': 'Q631147'}], ['Q23245139', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?c WHERE { { VALUES ( ?p ) { ( resource:Q23028266 ) ( resource:Q23245139 ) } . ?p property:P703 ?c } . ?c rdf:type ontology:Q631147 }
hypothetical protein    NCgl0226 3-isopropylmalate dehydrogenase    RSP_0859
action filter_type
action union
action find
entity 3-isopropylmalate dehydrogenase    RSP_0859
relation found in taxon
action find
entity hypothetical protein    NCgl0226
relation found in taxon
type infraspecific name
{'OR': [['3-isopropylmalate dehydrogenase    RSP_0859', 'found in taxon', {'concept': 'infraspecific name'}], ['hypothetical protein    NCgl0226', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?c WHERE { { VALUES ( ?p ) { ( resource:3-isopropylmalate_dehydrogenase____RSP_0859 ) ( resource:hypothetical_protein____NCgl0226 ) } . ?p property:found_in_taxon ?c } . ?c rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102983 Q21102953
SYSTEM
Corynebacterium glutamicum ATCC 13032, Rhodobacter sphaeroides 2.4.1
Q21102983 Q21102953
OR((Q23028266,P703,c(Q631147)), (Q23245139,P703,c(Q631147)))
action filter_type
action union
action find
entity Q23028266
relation P703
action find
entity Q23245139
relation P703
type Q631147
[ANSWERS]
{'OR': [['Q23028266', 'P703', {'concept': 'Q631147'}], ['Q23245139', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?c WHERE { { VALUES ( ?p ) { ( resource:Q23028266 ) ( resource:Q23245139 ) } . ?p property:P703 ?c } . ?c rdf:type ontology:Q631147 }
Corynebacterium glutamicum ATCC 13032 Rhodobacter sphaeroides 2.4.1
Corynebacterium glutamicum ATCC 13032 Rhodobacter sphaeroides 2.4.1
action filter_type
action union
action find
entity 3-isopropylmalate dehydrogenase    RSP_0859
relation found in taxon
action find
entity hypothetical protein    NCgl0226
relation found in taxon
type infraspecific name
{'OR': [['3-isopropylmalate dehydrogenase    RSP_0859', 'found in taxon', {'concept': 'infraspecific name'}], ['hypothetical protein    NCgl0226', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?c WHERE { { VALUES ( ?p ) { ( resource:3-isopropylmalate_dehydrogenase____RSP_0859 ) ( resource:hypothetical_protein____NCgl0226 ) } . ?p property:found_in_taxon ?c } . ?c rdf:type ontology:infraspecific_name }
[]
Clarification
Comparative|More/Less|Single entity type|Indirect
P703
Q631147 Q863908
USER
Which infraspecific names are more number of nucleic acid sequences found than that infraspecific name ?
(c(Q863908),P703,c(Q631147))
[{'concept': 'Q863908'}, 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?y WHERE { ?z property:P703 ?y . ?z rdf:type ontology:Q863908 . ?y rdf:type ontology:Q631147 }
[{'concept': 'nucleic acid sequence'}, 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?y WHERE { ?z property:found_in_taxon ?y . ?z rdf:type ontology:nucleic_acid_sequence . ?y rdf:type ontology:infraspecific_name }
[]
infraspecific name nucleic acid sequence
Comparative|More/Less|Single entity type|Clarification
Q21102953
SYSTEM
Did you mean Rhodobacter sphaeroides 2.4.1 ?
(c(Q863908),P703,c(Q631147))
[ANSWER]
[{'concept': 'Q863908'}, 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?y WHERE { ?z property:P703 ?y . ?z rdf:type ontology:Q863908 . ?y rdf:type ontology:Q631147 }
Did you mean Rhodobacter sphaeroides 2.4.1 ?
Rhodobacter sphaeroides 2.4.1
[{'concept': 'nucleic acid sequence'}, 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?y WHERE { ?z property:found_in_taxon ?y . ?z rdf:type ontology:nucleic_acid_sequence . ?y rdf:type ontology:infraspecific_name }
[]
Comparative Reasoning (All)
USER
Yes
(c(Q863908),P703,c(Q631147))
[{'concept': 'Q863908'}, 'P703', {'concept': 'Q631147'}]
[{'concept': 'nucleic acid sequence'}, 'found in taxon', {'concept': 'infraspecific name'}]
[]
Q21102993 Q21102995 Q21102996
SYSTEM
Burkholderia mallei ATCC 23344, Burkholderia pseudomallei K96243, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Q21102993 Q21102995 Q21102996 Q21102997 Q21102998 Q27510868 Q21079489 Q21102947 Q21102930 Q21102924 Q21102927 Q21102986 Q21102928 Q21102918 Q21102988 Q21079490 Q21102950 Q23309229 Q21102972 Q21102970 Q21102931 Q21102937 Q21102934 Q21102939
(c(Q863908),P703,c(Q631147))
[ANSWERS] are more number of nucleic acid sequences found than that infraspecific name
[{'concept': 'Q863908'}, 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?y WHERE { ?z property:P703 ?y . ?z rdf:type ontology:Q863908 . ?y rdf:type ontology:Q631147 }
Burkholderia mallei ATCC 23344 Burkholderia pseudomallei K96243 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Salmonella enterica subsp. enterica serovar Typhi str. CT18 Amycolatopsis mediterranei U32 Saccharomyces cerevisiae S288c Pseudomonas putida KT2440 Vibrio parahaemolyticus RIMD 2210633 Escherichia coli O157:H7 str. Sakai Bordetella bronchiseptica 253 Enterobacter aerogenes KCTC 2190 Mycobacterium smegmatis str. MC2 155 Enterobacter cloacae subsp. cloacae ATCC 13047 Sinorhizobium meliloti 1021 Streptomyces coelicolor A3(2) Pseudomonas syringae pv. syringae B728a Bacteroides fragilis YCH46 Sinorhizobium fredii NGR234 Bacillus thuringiensis serovar konkukian str. 97-27 Bacillus cereus ATCC 14579 Escherichia coli UMN026 Escherichia coli O104:H4 str. 2011C-3493 Escherichia coli O83:H1 str. NRG 857C Klebsiella pneumoniae subsp. pneumoniae HS11286
Burkholderia mallei ATCC 23344, Burkholderia pseudomallei K96243 and Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 are more number of nucleic acid sequences found than that infraspecific name
Burkholderia mallei ATCC 23344 Burkholderia pseudomallei K96243 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
[{'concept': 'nucleic acid sequence'}, 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?y WHERE { ?z property:found_in_taxon ?y . ?z rdf:type ontology:nucleic_acid_sequence . ?y rdf:type ontology:infraspecific_name }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q17709777 Q23028266
P688
Q181394
USER
Which nutrients do 3-isopropylmalate dehydrogenase    RSP_0859 or ADCY9 encode ?
OR((Q23028266,P688,c(Q181394)), (Q17709777,P688,c(Q181394)))
action filter_type
action union
action find
entity Q23028266
relation P688
action find
entity Q17709777
relation P688
type Q181394
{'OR': [['Q23028266', 'P688', {'concept': 'Q181394'}], ['Q17709777', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?k WHERE { { VALUES ( ?u ) { ( resource:Q23028266 ) ( resource:Q17709777 ) } . ?u property:P688 ?k } . ?k rdf:type ontology:Q181394 }
ADCY9 3-isopropylmalate dehydrogenase    RSP_0859
action filter_type
action union
action find
entity 3-isopropylmalate dehydrogenase    RSP_0859
relation encodes
action find
entity ADCY9
relation encodes
type nutrient
{'OR': [['3-isopropylmalate dehydrogenase    RSP_0859', 'encodes', {'concept': 'nutrient'}], ['ADCY9', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?k WHERE { { VALUES ( ?u ) { ( resource:3-isopropylmalate_dehydrogenase____RSP_0859 ) ( resource:ADCY9 ) } . ?u property:encodes ?k } . ?k rdf:type ontology:nutrient }
[]
nutrient
Q23050544 Q21111193 Q21149543
SYSTEM
3-isopropylmalate dehydrogenase    RSP_0859, Adenylate cyclase type 9, Adenylate cyclase type 9
Q23050544 Q21111193 Q21149543
OR((Q23028266,P688,c(Q181394)), (Q17709777,P688,c(Q181394)))
action filter_type
action union
action find
entity Q23028266
relation P688
action find
entity Q17709777
relation P688
type Q181394
[ANSWERS]
{'OR': [['Q23028266', 'P688', {'concept': 'Q181394'}], ['Q17709777', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?k WHERE { { VALUES ( ?u ) { ( resource:Q23028266 ) ( resource:Q17709777 ) } . ?u property:P688 ?k } . ?k rdf:type ontology:Q181394 }
3-isopropylmalate dehydrogenase    RSP_0859 Adenylate cyclase type 9 Adenylate cyclase type 9
3-isopropylmalate dehydrogenase RSP 0859, Adenylate cyclase type 9 and Adenylate cyclase type 9 3-isopropylmalate dehydrogenase RSP_0859 or ADCY9 encode
3-isopropylmalate dehydrogenase    RSP_0859 Adenylate cyclase type 9 Adenylate cyclase type 9
action filter_type
action union
action find
entity 3-isopropylmalate dehydrogenase    RSP_0859
relation encodes
action find
entity ADCY9
relation encodes
type nutrient
{'OR': [['3-isopropylmalate dehydrogenase    RSP_0859', 'encodes', {'concept': 'nutrient'}], ['ADCY9', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?k WHERE { { VALUES ( ?u ) { ( resource:3-isopropylmalate_dehydrogenase____RSP_0859 ) ( resource:ADCY9 ) } . ?u property:encodes ?k } . ?k rdf:type ontology:nutrient }
[]
Logical Reasoning (All)
Logical|Intersection|Multiple_Relation
Q13667380 Q23028266
P702 P680
Q181394
USER
Which nutrients are encoded by 3-isopropylmalate dehydrogenase    RSP_0859 and have the molecular function metal ion binding ?
AND((c(Q181394),P702,Q23028266), (c(Q181394),P680,Q13667380))
action filter_type
action intersection
action find_reverse
entity Q23028266
relation P702
action find_reverse
entity Q13667380
relation P680
type Q181394
{'AND': [[{'concept': 'Q181394'}, 'P702', 'Q23028266'], [{'concept': 'Q181394'}, 'P680', 'Q13667380']]}
SELECT DISTINCT ?f WHERE { ?f property:P702 resource:Q23028266 . ?f property:P680 resource:Q13667380 . ?f rdf:type ontology:Q181394 }
metal ion binding 3-isopropylmalate dehydrogenase    RSP_0859
action filter_type
action intersection
action find_reverse
entity 3-isopropylmalate dehydrogenase    RSP_0859
relation encoded by
action find_reverse
entity metal ion binding
relation molecular function
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'encoded by', '3-isopropylmalate dehydrogenase    RSP_0859'], [{'concept': 'nutrient'}, 'molecular function', 'metal ion binding']]}
SELECT DISTINCT ?f WHERE { ?f property:encoded_by resource:3-isopropylmalate_dehydrogenase____RSP_0859 . ?f property:molecular_function resource:metal_ion_binding . ?f rdf:type ontology:nutrient }
[]
nutrient
Q23050544
SYSTEM
3-isopropylmalate dehydrogenase    RSP_0859
Q23050544
AND((c(Q181394),P702,Q23028266), (c(Q181394),P680,Q13667380))
action filter_type
action intersection
action find_reverse
entity Q23028266
relation P702
action find_reverse
entity Q13667380
relation P680
type Q181394
3-isopropylmalate dehydrogenase RSP 0859 is encoded by 3-isopropylmalate dehydrogenase RSP_0859 and have the molecular function metal ion binding
{'AND': [[{'concept': 'Q181394'}, 'P702', 'Q23028266'], [{'concept': 'Q181394'}, 'P680', 'Q13667380']]}
SELECT DISTINCT ?f WHERE { ?f property:P702 resource:Q23028266 . ?f property:P680 resource:Q13667380 . ?f rdf:type ontology:Q181394 }
3-isopropylmalate dehydrogenase    RSP_0859
3-isopropylmalate dehydrogenase RSP 0859 is encoded by 3-isopropylmalate dehydrogenase RSP_0859 and have the molecular function metal ion binding
3-isopropylmalate dehydrogenase    RSP_0859
action filter_type
action intersection
action find_reverse
entity 3-isopropylmalate dehydrogenase    RSP_0859
relation encoded by
action find_reverse
entity metal ion binding
relation molecular function
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'encoded by', '3-isopropylmalate dehydrogenase    RSP_0859'], [{'concept': 'nutrient'}, 'molecular function', 'metal ion binding']]}
SELECT DISTINCT ?f WHERE { ?f property:encoded_by resource:3-isopropylmalate_dehydrogenase____RSP_0859 . ?f property:molecular_function resource:metal_ion_binding . ?f rdf:type ontology:nutrient }
[]