Simple Question (Direct)
Simple Question
Q23461527
P681
Q15989253
USER
Which is the part that is a component of ATP phosphoribosyltransferase    DVU0114 ?
(Q23461527,P681,c(Q15989253))
action filter_type
action find
entity Q23461527
relation P681
type Q15989253
['Q23461527', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?g WHERE { ?g rdf:type ontology:Q15989253 . resource:Q23461527 property:P681 ?g }
ATP phosphoribosyltransferase    DVU0114
action filter_type
action find
entity ATP phosphoribosyltransferase    DVU0114
relation cell component
type part
['ATP phosphoribosyltransferase    DVU0114', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?g WHERE { ?g rdf:type ontology:part . resource:ATP_phosphoribosyltransferase____DVU0114 property:cell_component ?g }
[]
part
Q79899
SYSTEM
cytoplasm
Q79899
(Q23461527,P681,c(Q15989253))
action filter_type
action find
entity Q23461527
relation P681
type Q15989253
[ANSWER] is the part that is a component of ATP phosphoribosyltransferase DVU0114
['Q23461527', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?g WHERE { ?g rdf:type ontology:Q15989253 . resource:Q23461527 property:P681 ?g }
cytoplasm
Cytoplasm is the part that is a component of ATP phosphoribosyltransferase DVU0114
cytoplasm
action filter_type
action find
entity ATP phosphoribosyltransferase    DVU0114
relation cell component
type part
['ATP phosphoribosyltransferase    DVU0114', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?g WHERE { ?g rdf:type ontology:part . resource:ATP_phosphoribosyltransferase____DVU0114 property:cell_component ?g }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23461527
P688
Q863908
USER
What is the nucleic acid sequence that is encoded by ATP phosphoribosyltransferase    DVU0114 ?
(c(Q863908),P688,Q23461527)
action filter_type
action find_reverse
entity Q23461527
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q23461527']
SELECT DISTINCT ?s WHERE { ?s property:P688 resource:Q23461527 . ?s rdf:type ontology:Q863908 }
ATP phosphoribosyltransferase    DVU0114
action filter_type
action find_reverse
entity ATP phosphoribosyltransferase    DVU0114
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'ATP phosphoribosyltransferase    DVU0114']
SELECT DISTINCT ?s WHERE { ?s property:encodes resource:ATP_phosphoribosyltransferase____DVU0114 . ?s rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23323778
SYSTEM
ATP phosphoribosyltransferase    DVU0114
Q23323778
(c(Q863908),P688,Q23461527)
action filter_type
action find_reverse
entity Q23461527
relation P688
type Q863908
The nucleic acid sequence that is encoded by ATP phosphoribosyltransferase DVU0114 is by ATP phosphoribosyltransferase DVU0114
[{'concept': 'Q863908'}, 'P688', 'Q23461527']
SELECT DISTINCT ?s WHERE { ?s property:P688 resource:Q23461527 . ?s rdf:type ontology:Q863908 }
ATP phosphoribosyltransferase    DVU0114
The nucleic acid sequence that is encoded by ATP phosphoribosyltransferase DVU0114 is by ATP phosphoribosyltransferase DVU0114
ATP phosphoribosyltransferase    DVU0114
action filter_type
action find_reverse
entity ATP phosphoribosyltransferase    DVU0114
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'ATP phosphoribosyltransferase    DVU0114']
SELECT DISTINCT ?s WHERE { ?s property:encodes resource:ATP_phosphoribosyltransferase____DVU0114 . ?s rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23323778
P703
Q16521
USER
Where is that nucleic acid sequence found ?
(Q23323778,P703,c(Q16521))
action filter_type
action find
entity Q23323778
relation P703
type Q16521
['Q23323778', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?s WHERE { resource:Q23323778 property:P703 ?s . ?s rdf:type ontology:Q16521 }
ATP phosphoribosyltransferase    DVU0114
action filter_type
action find
entity ATP phosphoribosyltransferase    DVU0114
relation found in taxon
type taxon
['ATP phosphoribosyltransferase    DVU0114', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?s WHERE { resource:ATP_phosphoribosyltransferase____DVU0114 property:found_in_taxon ?s . ?s rdf:type ontology:taxon }
[]
taxon
Q21383317
SYSTEM
Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Q21383317
(Q23323778,P703,c(Q16521))
action filter_type
action find
entity Q23323778
relation P703
type Q16521
That nucleic acid sequence is found in [ANSWER]
['Q23323778', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?s WHERE { resource:Q23323778 property:P703 ?s . ?s rdf:type ontology:Q16521 }
Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
That nucleic acid sequence is found in Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
action filter_type
action find
entity ATP phosphoribosyltransferase    DVU0114
relation found in taxon
type taxon
['ATP phosphoribosyltransferase    DVU0114', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?s WHERE { resource:ATP_phosphoribosyltransferase____DVU0114 property:found_in_taxon ?s . ?s rdf:type ontology:taxon }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23323778
P702
Q181394
USER
Which nutrient is encoded by that nucleic acid sequence ?
(c(Q181394),P702,Q21383317)
action filter_type
action find_reverse
entity Q23323778
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q21383317']
SELECT DISTINCT ?e WHERE { ?e property:P702 resource:Q23323778 . ?e rdf:type ontology:Q181394 }
ATP phosphoribosyltransferase    DVU0114
action filter_type
action find_reverse
entity ATP phosphoribosyltransferase    DVU0114
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough']
SELECT DISTINCT ?e WHERE { ?e property:encoded_by resource:ATP_phosphoribosyltransferase____DVU0114 . ?e rdf:type ontology:nutrient }
[]
nutrient
Q23461527
SYSTEM
ATP phosphoribosyltransferase    DVU0114
Q23461527
(c(Q181394),P702,Q21383317)
action filter_type
action find_reverse
entity Q23323778
relation P702
type Q181394
The ATP phosphoribosyltransferase DVU0114 is encoded by that nucleic acid sequence
[{'concept': 'Q181394'}, 'P702', 'Q21383317']
SELECT DISTINCT ?e WHERE { ?e property:P702 resource:Q23323778 . ?e rdf:type ontology:Q181394 }
ATP phosphoribosyltransferase    DVU0114
The ATP phosphoribosyltransferase DVU0114 is encoded by that nucleic acid sequence
ATP phosphoribosyltransferase    DVU0114
action filter_type
action find_reverse
entity ATP phosphoribosyltransferase    DVU0114
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough']
SELECT DISTINCT ?e WHERE { ?e property:encoded_by resource:ATP_phosphoribosyltransferase____DVU0114 . ?e rdf:type ontology:nutrient }
[]
Verification (Boolean) (All)
Verification|3 entities, 2 direct, 2(direct) are query entities, subject is indirect
Q23461527 Q13667380 Q14819477
P680
Q44424
USER
Does that nutrient have metal ion binding and mercury ion binding as its molecular function ?
(Q23461527,P680,Q13667380) (Q23461527,P680,Q14819477)
action is_in
entity Q23461527
action intersection
action find_reverse
entity Q13667380
relation P680
action find_reverse
entity Q14819477
relation P680
['Q23461527', 'P680', 'Q13667380'] ['Q23461527', 'P680', 'Q14819477']
ASK WHERE { resource:Q23461527 property:P680 resource:Q13667380 . resource:Q23461527 property:P680 resource:Q14819477 }
ATP phosphoribosyltransferase    DVU0114 metal ion binding mercury ion binding
action is_in
entity ATP phosphoribosyltransferase    DVU0114
action intersection
action find_reverse
entity metal ion binding
relation molecular function
action find_reverse
entity mercury ion binding
relation molecular function
['ATP phosphoribosyltransferase    DVU0114', 'molecular function', 'metal ion binding'] ['ATP phosphoribosyltransferase    DVU0114', 'molecular function', 'mercury ion binding']
ASK WHERE { resource:ATP_phosphoribosyltransferase____DVU0114 property:molecular_function resource:metal_ion_binding . resource:ATP_phosphoribosyltransferase____DVU0114 property:molecular_function resource:mercury_ion_binding }
[]
chemical bond
SYSTEM
YES and NO respectively
(Q23461527,P680,Q13667380) (Q23461527,P680,Q14819477)
action is_in
entity Q23461527
action intersection
action find_reverse
entity Q13667380
relation P680
action find_reverse
entity Q14819477
relation P680
[ANSWER]
['Q23461527', 'P680', 'Q13667380'] ['Q23461527', 'P680', 'Q14819477']
ASK WHERE { resource:Q23461527 property:P680 resource:Q13667380 . resource:Q23461527 property:P680 resource:Q14819477 }
YES and NO respectively
action is_in
entity ATP phosphoribosyltransferase    DVU0114
action intersection
action find_reverse
entity metal ion binding
relation molecular function
action find_reverse
entity mercury ion binding
relation molecular function
['ATP phosphoribosyltransferase    DVU0114', 'molecular function', 'metal ion binding'] ['ATP phosphoribosyltransferase    DVU0114', 'molecular function', 'mercury ion binding']
ASK WHERE { resource:ATP_phosphoribosyltransferase____DVU0114 property:molecular_function resource:metal_ion_binding . resource:ATP_phosphoribosyltransferase____DVU0114 property:molecular_function resource:mercury_ion_binding }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Single entity type
Q14349667
P682
Q1057 Q181394
USER
How many metabolic processes are lesser number of nutrients involved in than lipid metabolic process ?
(c(Q181394),P682,c(Q1057))
action count
action less
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
action count
action filter_type
action find_reverse
entity Q14349667
relation P682
type Q181394
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ( COUNT ( ?u ) AS ?c ) WHERE { { SELECT DISTINCT ?u ( COUNT ( ?z ) AS ?r ) WHERE { ?z property:P682 ?u . ?z rdf:type ontology:Q181394 . ?u rdf:type ontology:Q1057 } GROUP BY ?u } . { SELECT DISTINCT ( COUNT ( ?d ) AS ?o ) WHERE { ?d property:P682 resource:Q14349667 . ?d rdf:type ontology:Q181394 } } . FILTER ( ?r < ?o ) }
lipid metabolic process
action count
action less
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
action count
action filter_type
action find_reverse
entity lipid metabolic process
relation biological process
type nutrient
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ( COUNT ( ?u ) AS ?c ) WHERE { { SELECT DISTINCT ?u ( COUNT ( ?z ) AS ?r ) WHERE { ?z property:biological_process ?u . ?z rdf:type ontology:nutrient . ?u rdf:type ontology:metabolic_process } GROUP BY ?u } . { SELECT DISTINCT ( COUNT ( ?d ) AS ?o ) WHERE { ?d property:biological_process resource:lipid_metabolic_process . ?d rdf:type ontology:nutrient } } . FILTER ( ?r < ?o ) }
[]
metabolic process nutrient
SYSTEM
76
Q14864889 Q14907628 Q14913194 Q22274727 Q22251129 Q14905693 Q14860777 Q21134382 Q21097138 Q14819379 Q21759902 Q21133617 Q133895 Q21157940 Q21116483 Q14863351 Q21102358 Q21114210 Q14907178 Q21121151 Q14880758 Q21761098 Q22275051 Q21100626 Q14913439 Q14916189 Q21159531 Q21111970 Q898365 Q22274640 Q22279483 Q21119973 Q14865941 Q22282595 Q14907180 Q14907181 Q14905125 Q21096256 Q14863432 Q14902250 Q21124879 Q14909347 Q15313450 Q179924 Q21101220 Q21095286 Q14863986 Q14358591 Q838181 Q21116485 Q14859896 Q21103172 Q22276072 Q14914233 Q14897831 Q14645736 Q14864262 Q14859628 Q14819787 Q21119193 Q22274791 Q14819781 Q22279537 Q22283508 Q14327719 Q22279533 Q21124620 Q14860507 Q21112195 Q14890104 Q14864417 Q14864414 Q21759328 Q900386 Q14912265 Q21760838
(c(Q181394),P682,c(Q1057))
action count
action less
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
action count
action filter_type
action find_reverse
entity Q14349667
relation P682
type Q181394
[ANSWER]
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ( COUNT ( ?u ) AS ?c ) WHERE { { SELECT DISTINCT ?u ( COUNT ( ?z ) AS ?r ) WHERE { ?z property:P682 ?u . ?z rdf:type ontology:Q181394 . ?u rdf:type ontology:Q1057 } GROUP BY ?u } . { SELECT DISTINCT ( COUNT ( ?d ) AS ?o ) WHERE { ?d property:P682 resource:Q14349667 . ?d rdf:type ontology:Q181394 } } . FILTER ( ?r < ?o ) }
cellular aromatic compound metabolic process multicellular organism metabolic process cellular ketone body metabolic process secondary metabolic process proteolysis in other organism translational initiation hormone biosynthetic process cofactor metabolic process cellular aldehyde metabolic process one-carbon metabolic process carbon fixation actin modification tricarboxylic acid cycle nitrobenzene metabolic process lymphotoxin A biosynthetic process signal transduction by protein phosphorylation sulfur compound metabolic process regulation of translational initiation by eIF2 alpha dephosphorylation interleukin-2 biosynthetic process reactive nitrogen species metabolic process nucleobase-containing compound metabolic process photosynthesis halogenated hydrocarbon metabolic process peptidyl-lysine modification to peptidyl-hypusine organophosphate metabolic process organic acid metabolic process selenium compound metabolic process reactive oxygen species biosynthetic process glycosylation cellular biosynthetic process cellular macromolecule metabolic process oxygen metabolic process connective tissue growth factor biosynthetic process ketone body metabolic process interleukin-13 biosynthetic process granulocyte macrophage colony-stimulating factor biosynthetic process neurotransmitter metabolic process cellular carbohydrate metabolic process reactive oxygen species metabolic process telomere maintenance via semi-conservative replication interleukin-8 biosynthetic process flavonoid metabolic process methylation-dependent chromatin silencing bioluminescence wax biosynthetic process amyloid fibril formation hormone catabolic process xenobiotic metabolic process respiratory burst interleukin-6 biosynthetic process cellular amino acid metabolic process DNA protection glycosyl compound metabolic process phosphatidic acid metabolic process isotype switching thyroid hormone metabolic process protein metabolic process cellular lipid metabolic process peptide hormone processing cellular modified amino acid metabolic process organic cyclic compound metabolic process generation of precursor metabolites and energy viral RNA genome replication IRES-dependent viral translational initiation small molecule metabolic process transposon integration transposition, DNA-mediated receptor internalization patched ligand maturation toxin metabolic process heterocycle metabolic process drug metabolic process cellular catabolic process demethylation cellular ketone metabolic process phosphorus metabolic process
76
action count
action less
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
action count
action filter_type
action find_reverse
entity lipid metabolic process
relation biological process
type nutrient
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ( COUNT ( ?u ) AS ?c ) WHERE { { SELECT DISTINCT ?u ( COUNT ( ?z ) AS ?r ) WHERE { ?z property:biological_process ?u . ?z rdf:type ontology:nutrient . ?u rdf:type ontology:metabolic_process } GROUP BY ?u } . { SELECT DISTINCT ( COUNT ( ?d ) AS ?o ) WHERE { ?d property:biological_process resource:lipid_metabolic_process . ?d rdf:type ontology:nutrient } } . FILTER ( ?r < ?o ) }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Single entity type|Incomplete
Q21101220
P682
Q1057 Q181394
USER
And what about wax biosynthetic process?
(c(Q181394),P682,c(Q1057))
action count
action less
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
action count
action filter_type
action find_reverse
entity Q21101220
relation P682
type Q181394
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ( COUNT ( ?g ) AS ?j ) WHERE { { SELECT DISTINCT ?g ( COUNT ( ?y ) AS ?w ) WHERE { ?y property:P682 ?g . ?g rdf:type ontology:Q1057 . ?y rdf:type ontology:Q181394 } GROUP BY ?g } . FILTER ( ?w < ?r ) . { SELECT DISTINCT ( COUNT ( ?k ) AS ?r ) WHERE { ?k property:P682 resource:Q21101220 . ?k rdf:type ontology:Q181394 } } }
wax biosynthetic process
action count
action less
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
action count
action filter_type
action find_reverse
entity wax biosynthetic process
relation biological process
type nutrient
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ( COUNT ( ?g ) AS ?j ) WHERE { { SELECT DISTINCT ?g ( COUNT ( ?y ) AS ?w ) WHERE { ?y property:biological_process ?g . ?g rdf:type ontology:metabolic_process . ?y rdf:type ontology:nutrient } GROUP BY ?g } . FILTER ( ?w < ?r ) . { SELECT DISTINCT ( COUNT ( ?k ) AS ?r ) WHERE { ?k property:biological_process resource:wax_biosynthetic_process . ?k rdf:type ontology:nutrient } } }
[]
metabolic process nutrient
SYSTEM
33
Q14907628 Q14913194 Q22274727 Q22251129 Q21134382 Q21133617 Q21157940 Q21116483 Q21114210 Q14907178 Q21121151 Q22275051 Q14913439 Q21111970 Q898365 Q22279483 Q21119973 Q14865941 Q22282595 Q14907180 Q14907181 Q14905125 Q14902250 Q21124879 Q14863986 Q21116485 Q14914233 Q21119193 Q22274791 Q22279533 Q21112195 Q21759328 Q14912265
(c(Q181394),P682,c(Q1057))
action count
action less
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
action count
action filter_type
action find_reverse
entity Q21101220
relation P682
type Q181394
[ANSWER]
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ( COUNT ( ?g ) AS ?j ) WHERE { { SELECT DISTINCT ?g ( COUNT ( ?y ) AS ?w ) WHERE { ?y property:P682 ?g . ?g rdf:type ontology:Q1057 . ?y rdf:type ontology:Q181394 } GROUP BY ?g } . FILTER ( ?w < ?r ) . { SELECT DISTINCT ( COUNT ( ?k ) AS ?r ) WHERE { ?k property:P682 resource:Q21101220 . ?k rdf:type ontology:Q181394 } } }
multicellular organism metabolic process cellular ketone body metabolic process secondary metabolic process proteolysis in other organism cofactor metabolic process actin modification nitrobenzene metabolic process lymphotoxin A biosynthetic process regulation of translational initiation by eIF2 alpha dephosphorylation interleukin-2 biosynthetic process reactive nitrogen species metabolic process halogenated hydrocarbon metabolic process organophosphate metabolic process reactive oxygen species biosynthetic process glycosylation cellular macromolecule metabolic process oxygen metabolic process connective tissue growth factor biosynthetic process ketone body metabolic process interleukin-13 biosynthetic process granulocyte macrophage colony-stimulating factor biosynthetic process neurotransmitter metabolic process telomere maintenance via semi-conservative replication interleukin-8 biosynthetic process hormone catabolic process interleukin-6 biosynthetic process phosphatidic acid metabolic process cellular modified amino acid metabolic process organic cyclic compound metabolic process transposon integration patched ligand maturation cellular catabolic process cellular ketone metabolic process
33
action count
action less
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
action count
action filter_type
action find_reverse
entity wax biosynthetic process
relation biological process
type nutrient
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ( COUNT ( ?g ) AS ?j ) WHERE { { SELECT DISTINCT ?g ( COUNT ( ?y ) AS ?w ) WHERE { ?y property:biological_process ?g . ?g rdf:type ontology:metabolic_process . ?y rdf:type ontology:nutrient } GROUP BY ?g } . FILTER ( ?w < ?r ) . { SELECT DISTINCT ( COUNT ( ?k ) AS ?r ) WHERE { ?k property:biological_process resource:wax_biosynthetic_process . ?k rdf:type ontology:nutrient } } }
[]