Simple Question (Direct)
Simple Question
Q27553116
P702
Q863908
USER
Which nucleic acid sequence encodes SNAP receptor SEC22 YLR268W ?
(Q27553116,P702,c(Q863908))
action filter_type
action find
entity Q27553116
relation P702
type Q863908
['Q27553116', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?h WHERE { resource:Q27553116 property:P702 ?h . ?h rdf:type ontology:Q863908 }
SNAP receptor SEC22 YLR268W
action filter_type
action find
entity SNAP receptor SEC22 YLR268W
relation encoded by
type nucleic acid sequence
['SNAP receptor SEC22 YLR268W', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?h WHERE { resource:SNAP_receptor_SEC22_YLR268W property:encoded_by ?h . ?h rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q27546037
SYSTEM
SNAP receptor SEC22 YLR268W
Q27546037
(Q27553116,P702,c(Q863908))
action filter_type
action find
entity Q27553116
relation P702
type Q863908
[ANSWER] encodes [ANSWER]
['Q27553116', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?h WHERE { resource:Q27553116 property:P702 ?h . ?h rdf:type ontology:Q863908 }
SNAP receptor SEC22 YLR268W
SNAP receptor SEC22 YLR268W encodes SNAP receptor SEC22 YLR268W
SNAP receptor SEC22 YLR268W
action filter_type
action find
entity SNAP receptor SEC22 YLR268W
relation encoded by
type nucleic acid sequence
['SNAP receptor SEC22 YLR268W', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?h WHERE { resource:SNAP_receptor_SEC22_YLR268W property:encoded_by ?h . ?h rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q27553116
P703
Q631147
USER
Which infraspecific name is that nutrient found in ?
(Q27546037,P703,c(Q631147))
action filter_type
action find
entity Q27553116
relation P703
type Q631147
['Q27546037', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:Q631147 . resource:Q27553116 property:P703 ?x }
SNAP receptor SEC22 YLR268W
action filter_type
action find
entity SNAP receptor SEC22 YLR268W
relation found in taxon
type infraspecific name
['SNAP receptor SEC22 YLR268W', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:infraspecific_name . resource:SNAP_receptor_SEC22_YLR268W property:found_in_taxon ?x }
[]
infraspecific name
Q27510868
SYSTEM
Saccharomyces cerevisiae S288c
Q27510868
(Q27546037,P703,c(Q631147))
action filter_type
action find
entity Q27553116
relation P703
type Q631147
[ANSWER] is that nutrient found in
['Q27546037', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:Q631147 . resource:Q27553116 property:P703 ?x }
Saccharomyces cerevisiae S288c
Saccharomyces cerevisiae S288c is that nutrient found in
Saccharomyces cerevisiae S288c
action filter_type
action find
entity SNAP receptor SEC22 YLR268W
relation found in taxon
type infraspecific name
['SNAP receptor SEC22 YLR268W', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:infraspecific_name . resource:SNAP_receptor_SEC22_YLR268W property:found_in_taxon ?x }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q27553116
P681
Q15989253
USER
Which part is a component of that nutrient ?
(Q27510868,P681,c(Q15989253))
action filter_type
action find
entity Q27553116
relation P681
type Q15989253
['Q27510868', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?d WHERE { resource:Q27553116 property:P681 ?d . ?d rdf:type ontology:Q15989253 }
SNAP receptor SEC22 YLR268W
action filter_type
action find
entity SNAP receptor SEC22 YLR268W
relation cell component
type part
['Saccharomyces cerevisiae S288c', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?d WHERE { resource:SNAP_receptor_SEC22_YLR268W property:cell_component ?d . ?d rdf:type ontology:part }
[]
part
Q14349455
SYSTEM
membrane
Q14349455
(Q27510868,P681,c(Q15989253))
action filter_type
action find
entity Q27553116
relation P681
type Q15989253
The [ANSWER] is a component of that nutrient
['Q27510868', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?d WHERE { resource:Q27553116 property:P681 ?d . ?d rdf:type ontology:Q15989253 }
membrane
The membrane is a component of that nutrient
membrane
action filter_type
action find
entity SNAP receptor SEC22 YLR268W
relation cell component
type part
['Saccharomyces cerevisiae S288c', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?d WHERE { resource:SNAP_receptor_SEC22_YLR268W property:cell_component ?d . ?d rdf:type ontology:part }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q27553116
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(c(Q863908),P688,Q14349455)
action filter_type
action find_reverse
entity Q27553116
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q14349455']
SELECT DISTINCT ?b WHERE { ?b property:P688 resource:Q27553116 . ?b rdf:type ontology:Q863908 }
SNAP receptor SEC22 YLR268W
action filter_type
action find_reverse
entity SNAP receptor SEC22 YLR268W
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'membrane']
SELECT DISTINCT ?b WHERE { ?b property:encodes resource:SNAP_receptor_SEC22_YLR268W . ?b rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q27546037
SYSTEM
SNAP receptor SEC22 YLR268W
Q27546037
(c(Q863908),P688,Q14349455)
action filter_type
action find_reverse
entity Q27553116
relation P688
type Q863908
[ANSWER] encodes that nutrient
[{'concept': 'Q863908'}, 'P688', 'Q14349455']
SELECT DISTINCT ?b WHERE { ?b property:P688 resource:Q27553116 . ?b rdf:type ontology:Q863908 }
SNAP receptor SEC22 YLR268W
SNAP receptor SEC22 YLR268W encodes that nutrient
SNAP receptor SEC22 YLR268W
action filter_type
action find_reverse
entity SNAP receptor SEC22 YLR268W
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'membrane']
SELECT DISTINCT ?b WHERE { ?b property:encodes resource:SNAP_receptor_SEC22_YLR268W . ?b rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q18034694
Q863908
USER
And how about CTIF?
(Q18034694,P684,c(Q863908))
action filter_type
action find
entity Q18034694
relation P684
type Q863908
['Q18034694', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?f WHERE { resource:Q18034694 property:P684 ?f . ?f rdf:type ontology:Q863908 }
CTIF
action filter_type
action find
entity CTIF
relation ortholog
type nucleic acid sequence
['CTIF', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?f WHERE { resource:CTIF property:ortholog ?f . ?f rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18300913
SYSTEM
Ctif
Q18300913
(Q18034694,P684,c(Q863908))
action filter_type
action find
entity Q18034694
relation P684
type Q863908
[ANSWER]
['Q18034694', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?f WHERE { resource:Q18034694 property:P684 ?f . ?f rdf:type ontology:Q863908 }
Ctif
Ctif
action filter_type
action find
entity CTIF
relation ortholog
type nucleic acid sequence
['CTIF', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?f WHERE { resource:CTIF property:ortholog ?f . ?f rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|3 entities, all direct, 2 are query entities
Q18300913 Q18034694 Q23031279
P684
Q863908
USER
Is Ctif the species that has CTIF and Flp pilus assembly protein TadG    RSP_0401 as its orthologous gene ?
(Q18300913,P684,Q18034694) (Q18300913,P684,Q23031279)
action is_in
entity Q18300913
action intersection
action find_reverse
entity Q18034694
relation P684
action find_reverse
entity Q23031279
relation P684
['Q18300913', 'P684', 'Q18034694'] ['Q18300913', 'P684', 'Q23031279']
ASK WHERE { resource:Q18300913 property:P684 resource:Q18034694 . resource:Q18300913 property:P684 resource:Q23031279 }
Ctif CTIF Flp pilus assembly protein TadG    RSP_0401
action is_in
entity Ctif
action intersection
action find_reverse
entity CTIF
relation ortholog
action find_reverse
entity Flp pilus assembly protein TadG    RSP_0401
relation ortholog
['Ctif', 'ortholog', 'CTIF'] ['Ctif', 'ortholog', 'Flp pilus assembly protein TadG    RSP_0401']
ASK WHERE { resource:Ctif property:ortholog resource:CTIF . resource:Ctif property:ortholog resource:Flp_pilus_assembly_protein_TadG____RSP_0401 }
[]
nucleic acid sequence
SYSTEM
YES and NO respectively
(Q18300913,P684,Q18034694) (Q18300913,P684,Q23031279)
action is_in
entity Q18300913
action intersection
action find_reverse
entity Q18034694
relation P684
action find_reverse
entity Q23031279
relation P684
[ANSWER]
['Q18300913', 'P684', 'Q18034694'] ['Q18300913', 'P684', 'Q23031279']
ASK WHERE { resource:Q18300913 property:P684 resource:Q18034694 . resource:Q18300913 property:P684 resource:Q23031279 }
YES and NO respectively
action is_in
entity Ctif
action intersection
action find_reverse
entity CTIF
relation ortholog
action find_reverse
entity Flp pilus assembly protein TadG    RSP_0401
relation ortholog
['Ctif', 'ortholog', 'CTIF'] ['Ctif', 'ortholog', 'Flp pilus assembly protein TadG    RSP_0401']
ASK WHERE { resource:Ctif property:ortholog resource:CTIF . resource:Ctif property:ortholog resource:Flp_pilus_assembly_protein_TadG____RSP_0401 }
[]