Simple Question (Direct)
Simple Question
Q27754132
P682
Q1057
USER
Which metabolic process is hydrolase    SCO7506 involved in ?
(Q27754132,P682,c(Q1057))
action filter_type
action find
entity Q27754132
relation P682
type Q1057
['Q27754132', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?a WHERE { resource:Q27754132 property:P682 ?a . ?a rdf:type ontology:Q1057 }
hydrolase    SCO7506
action filter_type
action find
entity hydrolase    SCO7506
relation biological process
type metabolic process
['hydrolase    SCO7506', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?a WHERE { resource:hydrolase____SCO7506 property:biological_process ?a . ?a rdf:type ontology:metabolic_process }
[]
metabolic process
Q14762260
SYSTEM
carbohydrate metabolic process
Q14762260
(Q27754132,P682,c(Q1057))
action filter_type
action find
entity Q27754132
relation P682
type Q1057
Hydrolase SCO7506 is a [ANSWER]
['Q27754132', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?a WHERE { resource:Q27754132 property:P682 ?a . ?a rdf:type ontology:Q1057 }
carbohydrate metabolic process
Hydrolase SCO7506 is a carbohydrate metabolic process
carbohydrate metabolic process
action filter_type
action find
entity hydrolase    SCO7506
relation biological process
type metabolic process
['hydrolase    SCO7506', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?a WHERE { resource:hydrolase____SCO7506 property:biological_process ?a . ?a rdf:type ontology:metabolic_process }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q27754132
P681
Q45948
USER
Which is the cell component of that nutrient ?
(Q14762260,P681,c(Q45948))
action filter_type
action find
entity Q27754132
relation P681
type Q45948
['Q14762260', 'P681', {'concept': 'Q45948'}]
SELECT DISTINCT ?f WHERE { resource:Q27754132 property:P681 ?f . ?f rdf:type ontology:Q45948 }
hydrolase    SCO7506
action filter_type
action find
entity hydrolase    SCO7506
relation cell component
type organelle
['carbohydrate metabolic process', 'cell component', {'concept': 'organelle'}]
SELECT DISTINCT ?f WHERE { resource:hydrolase____SCO7506 property:cell_component ?f . ?f rdf:type ontology:organelle }
[]
organelle
Q14349519
SYSTEM
intracellular membrane-bounded organelle
Q14349519
(Q14762260,P681,c(Q45948))
action filter_type
action find
entity Q27754132
relation P681
type Q45948
[ANSWER] is the cell component of that nutrient
['Q14762260', 'P681', {'concept': 'Q45948'}]
SELECT DISTINCT ?f WHERE { resource:Q27754132 property:P681 ?f . ?f rdf:type ontology:Q45948 }
intracellular membrane-bounded organelle
Intracellular membrane-bounded organelle is the cell component of that nutrient
intracellular membrane-bounded organelle
action filter_type
action find
entity hydrolase    SCO7506
relation cell component
type organelle
['carbohydrate metabolic process', 'cell component', {'concept': 'organelle'}]
SELECT DISTINCT ?f WHERE { resource:hydrolase____SCO7506 property:cell_component ?f . ?f rdf:type ontology:organelle }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q14349519 Q21494854
P681
Q181394
USER
Does Anthrax toxin receptor 1 have that organelle as its cell component ?
(Q21494854,P681,Q14349519)
action is_in
entity Q21494854
action find
entity Q14349519
relation P681
['Q21494854', 'P681', 'Q14349519']
ASK WHERE { resource:Q14349519 property:P681 resource:Q21494854 }
intracellular membrane-bounded organelle Anthrax toxin receptor 1
action is_in
entity Anthrax toxin receptor 1
action find
entity intracellular membrane-bounded organelle
relation cell component
['Anthrax toxin receptor 1', 'cell component', 'intracellular membrane-bounded organelle']
ASK WHERE { resource:intracellular_membrane-bounded_organelle property:cell_component resource:Anthrax_toxin_receptor_1 }
[]
nutrient
SYSTEM
NO
(Q21494854,P681,Q14349519)
action is_in
entity Q21494854
action find
entity Q14349519
relation P681
[ANSWER]
['Q21494854', 'P681', 'Q14349519']
ASK WHERE { resource:Q14349519 property:P681 resource:Q21494854 }
No
action is_in
entity Anthrax toxin receptor 1
action find
entity intracellular membrane-bounded organelle
relation cell component
['Anthrax toxin receptor 1', 'cell component', 'intracellular membrane-bounded organelle']
ASK WHERE { resource:intracellular_membrane-bounded_organelle property:cell_component resource:Anthrax_toxin_receptor_1 }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q27754132 Q23406456
P702
Q863908
USER
Does Putative outer membrane protein precursor    FP0099 encode hydrolase    SCO7506 ?
(Q27754132,P702,Q23406456)
action is_in
entity Q23406456
action find
entity Q27754132
relation P702
['Q27754132', 'P702', 'Q23406456']
ASK WHERE { resource:Q27754132 property:P702 resource:Q23406456 }
hydrolase    SCO7506 Putative outer membrane protein precursor    FP0099
action is_in
entity Putative outer membrane protein precursor    FP0099
action find
entity hydrolase    SCO7506
relation encoded by
['hydrolase    SCO7506', 'encoded by', 'Putative outer membrane protein precursor    FP0099']
ASK WHERE { resource:hydrolase____SCO7506 property:encoded_by resource:Putative_outer_membrane_protein_precursor____FP0099 }
[]
nucleic acid sequence
SYSTEM
NO
(Q27754132,P702,Q23406456)
action is_in
entity Q23406456
action find
entity Q27754132
relation P702
[ANSWER]
['Q27754132', 'P702', 'Q23406456']
ASK WHERE { resource:Q27754132 property:P702 resource:Q23406456 }
No
action is_in
entity Putative outer membrane protein precursor    FP0099
action find
entity hydrolase    SCO7506
relation encoded by
['hydrolase    SCO7506', 'encoded by', 'Putative outer membrane protein precursor    FP0099']
ASK WHERE { resource:hydrolase____SCO7506 property:encoded_by resource:Putative_outer_membrane_protein_precursor____FP0099 }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Single entity type
P682
Q1057 Q181394
USER
How many metabolic processes are atleast 3998 nutrients involved in ?
(c(Q181394),P682,c(Q1057))
action count
action atleast
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
value 3998
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ( COUNT ( ?s ) AS ?d ) WHERE { { SELECT DISTINCT ?s ( COUNT ( ?l ) AS ?e ) WHERE { ?s rdf:type ontology:Q1057 . ?l rdf:type ontology:Q181394 . ?l property:P682 ?s } GROUP BY ?s } . FILTER ( ?e >= 3998 ) }
action count
action atleast
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
value 3998
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ( COUNT ( ?s ) AS ?d ) WHERE { { SELECT DISTINCT ?s ( COUNT ( ?l ) AS ?e ) WHERE { ?s rdf:type ontology:metabolic_process . ?l rdf:type ontology:nutrient . ?l property:biological_process ?s } GROUP BY ?s } . FILTER ( ?e >= 3998 ) }
[]
metabolic process nutrient
SYSTEM
2
Q14762260 Q14349764
(c(Q181394),P682,c(Q1057))
action count
action atleast
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
value 3998
[ANSWER]
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ( COUNT ( ?s ) AS ?d ) WHERE { { SELECT DISTINCT ?s ( COUNT ( ?l ) AS ?e ) WHERE { ?s rdf:type ontology:Q1057 . ?l rdf:type ontology:Q181394 . ?l property:P682 ?s } GROUP BY ?s } . FILTER ( ?e >= 3998 ) }
carbohydrate metabolic process oxidation-reduction process
2
action count
action atleast
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
value 3998
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ( COUNT ( ?s ) AS ?d ) WHERE { { SELECT DISTINCT ?s ( COUNT ( ?l ) AS ?e ) WHERE { ?s rdf:type ontology:metabolic_process . ?l rdf:type ontology:nutrient . ?l property:biological_process ?s } GROUP BY ?s } . FILTER ( ?e >= 3998 ) }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q27754132
P703
Q631147
USER
Where is hydrolase    SCO7506 found ?
(Q27754132,P703,c(Q631147))
action filter_type
action find
entity Q27754132
relation P703
type Q631147
['Q27754132', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?k WHERE { resource:Q27754132 property:P703 ?k . ?k rdf:type ontology:Q631147 }
hydrolase    SCO7506
action filter_type
action find
entity hydrolase    SCO7506
relation found in taxon
type infraspecific name
['hydrolase    SCO7506', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?k WHERE { resource:hydrolase____SCO7506 property:found_in_taxon ?k . ?k rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102988
SYSTEM
Streptomyces coelicolor A3(2)
Q21102988
(Q27754132,P703,c(Q631147))
action filter_type
action find
entity Q27754132
relation P703
type Q631147
Hydrolase SCO7506 is found in [ANSWER]
['Q27754132', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?k WHERE { resource:Q27754132 property:P703 ?k . ?k rdf:type ontology:Q631147 }
Streptomyces coelicolor A3(2)
Hydrolase SCO7506 is found in Streptomyces coelicolor A3(2)
Streptomyces coelicolor A3(2)
action filter_type
action find
entity hydrolase    SCO7506
relation found in taxon
type infraspecific name
['hydrolase    SCO7506', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?k WHERE { resource:hydrolase____SCO7506 property:found_in_taxon ?k . ?k rdf:type ontology:infraspecific_name }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q23376084
Q631147
USER
And how about nitrogenase    Rru_A0793?
(Q23376084,P703,c(Q631147))
action filter_type
action find
entity Q23376084
relation P703
type Q631147
['Q23376084', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?d WHERE { resource:Q23376084 property:P703 ?d . ?d rdf:type ontology:Q631147 }
nitrogenase    Rru_A0793
action filter_type
action find
entity nitrogenase    Rru_A0793
relation found in taxon
type infraspecific name
['nitrogenase    Rru_A0793', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?d WHERE { resource:nitrogenase____Rru_A0793 property:found_in_taxon ?d . ?d rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102954
SYSTEM
Rhodospirillum rubrum ATCC 11170
Q21102954
(Q23376084,P703,c(Q631147))
action filter_type
action find
entity Q23376084
relation P703
type Q631147
[ANSWER]
['Q23376084', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?d WHERE { resource:Q23376084 property:P703 ?d . ?d rdf:type ontology:Q631147 }
Rhodospirillum rubrum ATCC 11170
Rhodospirillum rubrum ATCC 11170
action filter_type
action find
entity nitrogenase    Rru_A0793
relation found in taxon
type infraspecific name
['nitrogenase    Rru_A0793', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?d WHERE { resource:nitrogenase____Rru_A0793 property:found_in_taxon ?d . ?d rdf:type ontology:infraspecific_name }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Mult. entity type
Q21116154
P129
Q181394 Q181394 Q79529
USER
How many nutrients do around the same number of nutrients and chemical substances collaborate with as Adenosine receptor A3 ?
(c(Q181394)|c(Q79529),P129,c(Q181394))
action count
action approx
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
action count
action filter_multi_types
action find_reverse
entity Q21116154
relation P129
type Q181394
type Q79529
[[{'concept': 'Q181394'}, {'concept': 'Q79529'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?e ) AS ?a ) WHERE { { SELECT DISTINCT ( COUNT ( ?k ) AS ?d ) WHERE { ?k property:P129 resource:Q21116154 . { { ?k rdf:type ontology:Q79529 } UNION { ?k rdf:type ontology:Q181394 } } } } . FILTER ( ?n = ?d ) . { SELECT DISTINCT ?e ( COUNT ( ?g ) AS ?n ) WHERE { { ?e rdf:type ontology:Q181394 . ?g rdf:type ontology:Q181394 . ?g property:P129 ?e } UNION { ?g property:P129 ?e . ?e rdf:type ontology:Q181394 . ?g rdf:type ontology:Q79529 } } GROUP BY ?e } }
Adenosine receptor A3
action count
action approx
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
action count
action filter_multi_types
action find_reverse
entity Adenosine receptor A3
relation physically interacts with
type nutrient
type chemical substance
[[{'concept': 'nutrient'}, {'concept': 'chemical substance'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?e ) AS ?a ) WHERE { { SELECT DISTINCT ( COUNT ( ?k ) AS ?d ) WHERE { ?k property:physically_interacts_with resource:Adenosine_receptor_A3 . { { ?k rdf:type ontology:chemical_substance } UNION { ?k rdf:type ontology:nutrient } } } } . FILTER ( ?n = ?d ) . { SELECT DISTINCT ?e ( COUNT ( ?g ) AS ?n ) WHERE { { ?e rdf:type ontology:nutrient . ?g rdf:type ontology:nutrient . ?g property:physically_interacts_with ?e } UNION { ?g property:physically_interacts_with ?e . ?e rdf:type ontology:nutrient . ?g rdf:type ontology:chemical_substance } } GROUP BY ?e } }
[]
nutrient nutrient chemical substance
SYSTEM
36
Q21110942 Q21116154 Q309513 Q308856 Q4847910 Q413209 Q21154358 Q5123372 Q1486720 Q21109365 Q15323278 Q4847900 Q4847907 Q21116162 Q21116164 Q2844056 Q21115334 Q288382 Q21110872 Q21114578 Q21114576 Q7673856 Q21115961 Q21115962 Q21115965 Q3062781 Q12746120 Q5629167 Q288395 Q7834290 Q21114585 Q21114582 Q21497939 Q21150595 Q5520260 Q2034004
(c(Q181394)|c(Q79529),P129,c(Q181394))
action count
action approx
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
action count
action filter_multi_types
action find_reverse
entity Q21116154
relation P129
type Q181394
type Q79529
[ANSWER]
[[{'concept': 'Q181394'}, {'concept': 'Q79529'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?e ) AS ?a ) WHERE { { SELECT DISTINCT ( COUNT ( ?k ) AS ?d ) WHERE { ?k property:P129 resource:Q21116154 . { { ?k rdf:type ontology:Q79529 } UNION { ?k rdf:type ontology:Q181394 } } } } . FILTER ( ?n = ?d ) . { SELECT DISTINCT ?e ( COUNT ( ?g ) AS ?n ) WHERE { { ?e rdf:type ontology:Q181394 . ?g rdf:type ontology:Q181394 . ?g property:P129 ?e } UNION { ?g property:P129 ?e . ?e rdf:type ontology:Q181394 . ?g rdf:type ontology:Q79529 } } GROUP BY ?e } }
G-protein coupled receptor 55 Adenosine receptor A3 Histamine H1 receptor D(4) dopamine receptor Muscarinic acetylcholine receptor M2 Transient receptor potential cation channel subfamily V member 1 Histone deacetylase 3 Mu-type opioid receptor Glutamate receptor 3 5-hydroxytryptamine receptor 4 Transient receptor potential cation channel subfamily A member 1 Muscarinic acetylcholine receptor M1 Muscarinic acetylcholine receptor M4 Adenosine receptor A2a Adenosine receptor A2b Muscarinic acetylcholine receptor M3 Delta-type opioid receptor Histamine H4 receptor D(3) dopamine receptor Gamma-aminobutyric acid receptor subunit alpha-3 Gamma-aminobutyric acid receptor subunit alpha-5 Substance-P receptor Glutamate receptor 1 Glutamate receptor 2 Glutamate receptor 4 Adenosine receptor A1 Muscarinic acetylcholine receptor M5 Histone deacetylase 1 Histamine H3 receptor Transient receptor potential cation channel subfamily A member 1 Gamma-aminobutyric acid receptor subunit alpha-6 Gamma-aminobutyric acid receptor subunit alpha-2 5-hydroxytryptamine receptor 7 Cannabinoid receptor 2 Gamma-aminobutyric acid receptor subunit alpha-1 D(2) dopamine receptor
36
action count
action approx
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
action count
action filter_multi_types
action find_reverse
entity Adenosine receptor A3
relation physically interacts with
type nutrient
type chemical substance
[[{'concept': 'nutrient'}, {'concept': 'chemical substance'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?e ) AS ?a ) WHERE { { SELECT DISTINCT ( COUNT ( ?k ) AS ?d ) WHERE { ?k property:physically_interacts_with resource:Adenosine_receptor_A3 . { { ?k rdf:type ontology:chemical_substance } UNION { ?k rdf:type ontology:nutrient } } } } . FILTER ( ?n = ?d ) . { SELECT DISTINCT ?e ( COUNT ( ?g ) AS ?n ) WHERE { { ?e rdf:type ontology:nutrient . ?g rdf:type ontology:nutrient . ?g property:physically_interacts_with ?e } UNION { ?g property:physically_interacts_with ?e . ?e rdf:type ontology:nutrient . ?g rdf:type ontology:chemical_substance } } GROUP BY ?e } }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Single entity type
P682
Q1190554 Q181394
USER
How many events are atleast 45 nutrients involved in ?
(c(Q181394),P682,c(Q1190554))
action count
action atleast
action find_reverse_tuple_counts
relation P682
type Q1190554
type Q181394
value 45
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1190554'}]
SELECT DISTINCT ( COUNT ( ?u ) AS ?s ) WHERE { { SELECT DISTINCT ?u ( COUNT ( ?f ) AS ?e ) WHERE { ?f property:P682 ?u . ?f rdf:type ontology:Q181394 . ?u rdf:type ontology:Q1190554 } GROUP BY ?u } . FILTER ( ?e >= 45 ) }
action count
action atleast
action find_reverse_tuple_counts
relation biological process
type event
type nutrient
value 45
[{'concept': 'nutrient'}, 'biological process', {'concept': 'event'}]
SELECT DISTINCT ( COUNT ( ?u ) AS ?s ) WHERE { { SELECT DISTINCT ?u ( COUNT ( ?f ) AS ?e ) WHERE { ?f property:biological_process ?u . ?f rdf:type ontology:nutrient . ?u rdf:type ontology:event } GROUP BY ?u } . FILTER ( ?e >= 45 ) }
[]
event nutrient
SYSTEM
2
Q719426 Q2996394
(c(Q181394),P682,c(Q1190554))
action count
action atleast
action find_reverse_tuple_counts
relation P682
type Q1190554
type Q181394
value 45
[ANSWER]
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1190554'}]
SELECT DISTINCT ( COUNT ( ?u ) AS ?s ) WHERE { { SELECT DISTINCT ?u ( COUNT ( ?f ) AS ?e ) WHERE { ?f property:P682 ?u . ?f rdf:type ontology:Q181394 . ?u rdf:type ontology:Q1190554 } GROUP BY ?u } . FILTER ( ?e >= 45 ) }
lactation biological process
2
action count
action atleast
action find_reverse_tuple_counts
relation biological process
type event
type nutrient
value 45
[{'concept': 'nutrient'}, 'biological process', {'concept': 'event'}]
SELECT DISTINCT ( COUNT ( ?u ) AS ?s ) WHERE { { SELECT DISTINCT ?u ( COUNT ( ?f ) AS ?e ) WHERE { ?f property:biological_process ?u . ?f rdf:type ontology:nutrient . ?u rdf:type ontology:event } GROUP BY ?u } . FILTER ( ?e >= 45 ) }
[]