Simple Question (Direct)
Simple Question
Q22232666
P681
Q45948
USER
Which is the cell component of PGL/p-HBAD biosynthesis rhamnosyltransferase    Rv2962c ?
(Q22232666,P681,c(Q45948))
action filter_type
action find
entity Q22232666
relation P681
type Q45948
['Q22232666', 'P681', {'concept': 'Q45948'}]
SELECT DISTINCT ?o WHERE { resource:Q22232666 property:P681 ?o . ?o rdf:type ontology:Q45948 }
PGL/p-HBAD biosynthesis rhamnosyltransferase    Rv2962c
action filter_type
action find
entity PGL/p-HBAD biosynthesis rhamnosyltransferase    Rv2962c
relation cell component
type organelle
['PGL/p-HBAD biosynthesis rhamnosyltransferase    Rv2962c', 'cell component', {'concept': 'organelle'}]
SELECT DISTINCT ?o WHERE { resource:PGL/p-HBAD_biosynthesis_rhamnosyltransferase____Rv2962c property:cell_component ?o . ?o rdf:type ontology:organelle }
[]
organelle
Q14349519
SYSTEM
intracellular membrane-bounded organelle
Q14349519
(Q22232666,P681,c(Q45948))
action filter_type
action find
entity Q22232666
relation P681
type Q45948
[ANSWER] is the cell component of PGL/p-HBAD biosynthesis rhamnosyltransferase Rv2962c
['Q22232666', 'P681', {'concept': 'Q45948'}]
SELECT DISTINCT ?o WHERE { resource:Q22232666 property:P681 ?o . ?o rdf:type ontology:Q45948 }
intracellular membrane-bounded organelle
Intracellular membrane-bounded organelle is the cell component of PGL/p-HBAD biosynthesis rhamnosyltransferase Rv2962c
intracellular membrane-bounded organelle
action filter_type
action find
entity PGL/p-HBAD biosynthesis rhamnosyltransferase    Rv2962c
relation cell component
type organelle
['PGL/p-HBAD biosynthesis rhamnosyltransferase    Rv2962c', 'cell component', {'concept': 'organelle'}]
SELECT DISTINCT ?o WHERE { resource:PGL/p-HBAD_biosynthesis_rhamnosyltransferase____Rv2962c property:cell_component ?o . ?o rdf:type ontology:organelle }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q22232666
P702
Q863908
USER
What is the gene that encodes PGL/p-HBAD biosynthesis rhamnosyltransferase    Rv2962c ?
(Q22232666,P702,c(Q863908))
action filter_type
action find
entity Q22232666
relation P702
type Q863908
['Q22232666', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?v WHERE { resource:Q22232666 property:P702 ?v . ?v rdf:type ontology:Q863908 }
PGL/p-HBAD biosynthesis rhamnosyltransferase    Rv2962c
action filter_type
action find
entity PGL/p-HBAD biosynthesis rhamnosyltransferase    Rv2962c
relation encoded by
type nucleic acid sequence
['PGL/p-HBAD biosynthesis rhamnosyltransferase    Rv2962c', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?v WHERE { resource:PGL/p-HBAD_biosynthesis_rhamnosyltransferase____Rv2962c property:encoded_by ?v . ?v rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q22228135
SYSTEM
PGL/p-HBAD biosynthesis rhamnosyltransferase    Rv2962c
Q22228135
(Q22232666,P702,c(Q863908))
action filter_type
action find
entity Q22232666
relation P702
type Q863908
The gene that encodes PGL / p-HBAD biosynthesis rhamnosyltransferase Rv2962c is named PGL/p-HBAD biosynthesis rhamnosyltransferase Rv2962c
['Q22232666', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?v WHERE { resource:Q22232666 property:P702 ?v . ?v rdf:type ontology:Q863908 }
PGL/p-HBAD biosynthesis rhamnosyltransferase    Rv2962c
The gene that encodes PGL / p-HBAD biosynthesis rhamnosyltransferase Rv2962c is named PGL/p-HBAD biosynthesis rhamnosyltransferase Rv2962c
PGL/p-HBAD biosynthesis rhamnosyltransferase    Rv2962c
action filter_type
action find
entity PGL/p-HBAD biosynthesis rhamnosyltransferase    Rv2962c
relation encoded by
type nucleic acid sequence
['PGL/p-HBAD biosynthesis rhamnosyltransferase    Rv2962c', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?v WHERE { resource:PGL/p-HBAD_biosynthesis_rhamnosyltransferase____Rv2962c property:encoded_by ?v . ?v rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q22232666
P688
Q863908
USER
Which nucleic acid sequence encodes PGL/p-HBAD biosynthesis rhamnosyltransferase    Rv2962c ?
(c(Q863908),P688,Q22232666)
action filter_type
action find_reverse
entity Q22232666
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q22232666']
SELECT DISTINCT ?t WHERE { ?t property:P688 resource:Q22232666 . ?t rdf:type ontology:Q863908 }
PGL/p-HBAD biosynthesis rhamnosyltransferase    Rv2962c
action filter_type
action find_reverse
entity PGL/p-HBAD biosynthesis rhamnosyltransferase    Rv2962c
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'PGL/p-HBAD biosynthesis rhamnosyltransferase    Rv2962c']
SELECT DISTINCT ?t WHERE { ?t property:encodes resource:PGL/p-HBAD_biosynthesis_rhamnosyltransferase____Rv2962c . ?t rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q22228135
SYSTEM
PGL/p-HBAD biosynthesis rhamnosyltransferase    Rv2962c
Q22228135
(c(Q863908),P688,Q22232666)
action filter_type
action find_reverse
entity Q22232666
relation P688
type Q863908
PGL/p-HBAD biosynthesis rhamnosyltransferase Rv2962c encodes PGL/p-HBAD biosynthesis rhamnosyltransferase Rv2962c
[{'concept': 'Q863908'}, 'P688', 'Q22232666']
SELECT DISTINCT ?t WHERE { ?t property:P688 resource:Q22232666 . ?t rdf:type ontology:Q863908 }
PGL/p-HBAD biosynthesis rhamnosyltransferase    Rv2962c
PGL/p-HBAD biosynthesis rhamnosyltransferase Rv2962c encodes PGL/p-HBAD biosynthesis rhamnosyltransferase Rv2962c
PGL/p-HBAD biosynthesis rhamnosyltransferase    Rv2962c
action filter_type
action find_reverse
entity PGL/p-HBAD biosynthesis rhamnosyltransferase    Rv2962c
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'PGL/p-HBAD biosynthesis rhamnosyltransferase    Rv2962c']
SELECT DISTINCT ?t WHERE { ?t property:encodes resource:PGL/p-HBAD_biosynthesis_rhamnosyltransferase____Rv2962c . ?t rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q22228135
P703
Q631147
USER
What is the taxon to which that nucleic acid sequence belongs to ?
(Q22228135,P703,c(Q631147))
action filter_type
action find
entity Q22228135
relation P703
type Q631147
['Q22228135', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?t WHERE { ?t rdf:type ontology:Q631147 . resource:Q22228135 property:P703 ?t }
PGL/p-HBAD biosynthesis rhamnosyltransferase    Rv2962c
action filter_type
action find
entity PGL/p-HBAD biosynthesis rhamnosyltransferase    Rv2962c
relation found in taxon
type infraspecific name
['PGL/p-HBAD biosynthesis rhamnosyltransferase    Rv2962c', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?t WHERE { ?t rdf:type ontology:infraspecific_name . resource:PGL/p-HBAD_biosynthesis_rhamnosyltransferase____Rv2962c property:found_in_taxon ?t }
[]
infraspecific name
Q21102987
SYSTEM
Mycobacterium tuberculosis H37Rv
Q21102987
(Q22228135,P703,c(Q631147))
action filter_type
action find
entity Q22228135
relation P703
type Q631147
H [ANSWER]
['Q22228135', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?t WHERE { ?t rdf:type ontology:Q631147 . resource:Q22228135 property:P703 ?t }
Mycobacterium tuberculosis H37Rv
H Mycobacterium tuberculosis H37Rv
Mycobacterium tuberculosis H37Rv
action filter_type
action find
entity PGL/p-HBAD biosynthesis rhamnosyltransferase    Rv2962c
relation found in taxon
type infraspecific name
['PGL/p-HBAD biosynthesis rhamnosyltransferase    Rv2962c', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?t WHERE { ?t rdf:type ontology:infraspecific_name . resource:PGL/p-HBAD_biosynthesis_rhamnosyltransferase____Rv2962c property:found_in_taxon ?t }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q24135357
Q631147
USER
And how about hypothetical protein    ECL_01352?
(Q24135357,P703,c(Q631147))
action filter_type
action find
entity Q24135357
relation P703
type Q631147
['Q24135357', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?r WHERE { resource:Q24135357 property:P703 ?r . ?r rdf:type ontology:Q631147 }
hypothetical protein    ECL_01352
action filter_type
action find
entity hypothetical protein    ECL_01352
relation found in taxon
type infraspecific name
['hypothetical protein    ECL_01352', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?r WHERE { resource:hypothetical_protein____ECL_01352 property:found_in_taxon ?r . ?r rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102928
SYSTEM
Enterobacter cloacae subsp. cloacae ATCC 13047
Q21102928
(Q24135357,P703,c(Q631147))
action filter_type
action find
entity Q24135357
relation P703
type Q631147
[ANSWER]
['Q24135357', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?r WHERE { resource:Q24135357 property:P703 ?r . ?r rdf:type ontology:Q631147 }
Enterobacter cloacae subsp. cloacae ATCC 13047
Enterobacter cloacae subsp. cloacae ATCC 13047
action filter_type
action find
entity hypothetical protein    ECL_01352
relation found in taxon
type infraspecific name
['hypothetical protein    ECL_01352', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?r WHERE { resource:hypothetical_protein____ECL_01352 property:found_in_taxon ?r . ?r rdf:type ontology:infraspecific_name }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q189933
P361
Q5058355
USER
Which cellular components are microtubule a portion of ?
(Q189933,P361,c(Q5058355))
action filter_type
action find
entity Q189933
relation P361
type Q5058355
['Q189933', 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ?a WHERE { ?a rdf:type ontology:Q5058355 . resource:Q189933 property:P361 ?a }
microtubule
action filter_type
action find
entity microtubule
relation part of
type cellular component
['microtubule', 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ?a WHERE { ?a rdf:type ontology:cellular_component . resource:microtubule property:part_of ?a }
[]
cellular component
Q22329159 Q22330482
SYSTEM
ventral disc microtubule array, ventral disc supernumerary microtubule array
Q22329159 Q22330482
(Q189933,P361,c(Q5058355))
action filter_type
action find
entity Q189933
relation P361
type Q5058355
[ANSWERS]
['Q189933', 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ?a WHERE { ?a rdf:type ontology:Q5058355 . resource:Q189933 property:P361 ?a }
ventral disc microtubule array ventral disc supernumerary microtubule array
Which cellular components are microtubule a portion of
ventral disc microtubule array ventral disc supernumerary microtubule array
action filter_type
action find
entity microtubule
relation part of
type cellular component
['microtubule', 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ?a WHERE { ?a rdf:type ontology:cellular_component . resource:microtubule property:part_of ?a }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q21469807
Q5058355
USER
And how about dolichyl-phosphate-mannose-protein mannosyltransferase complex?
(Q21469807,P361,c(Q5058355))
action filter_type
action find
entity Q21469807
relation P361
type Q5058355
['Q21469807', 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ?y WHERE { ?y rdf:type ontology:Q5058355 . resource:Q21469807 property:P361 ?y }
dolichyl-phosphate-mannose-protein mannosyltransferase complex
action filter_type
action find
entity dolichyl-phosphate-mannose-protein mannosyltransferase complex
relation part of
type cellular component
['dolichyl-phosphate-mannose-protein mannosyltransferase complex', 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ?y WHERE { ?y rdf:type ontology:cellular_component . resource:dolichyl-phosphate-mannose-protein_mannosyltransferase_complex property:part_of ?y }
[]
cellular component
Q14329032
SYSTEM
endoplasmic reticulum membrane
Q14329032
(Q21469807,P361,c(Q5058355))
action filter_type
action find
entity Q21469807
relation P361
type Q5058355
[ANSWER]
['Q21469807', 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ?y WHERE { ?y rdf:type ontology:Q5058355 . resource:Q21469807 property:P361 ?y }
endoplasmic reticulum membrane
endoplasmic reticulum membrane
action filter_type
action find
entity dolichyl-phosphate-mannose-protein mannosyltransferase complex
relation part of
type cellular component
['dolichyl-phosphate-mannose-protein mannosyltransferase complex', 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ?y WHERE { ?y rdf:type ontology:cellular_component . resource:dolichyl-phosphate-mannose-protein_mannosyltransferase_complex property:part_of ?y }
[]
Comparative Reasoning (All)
Comparative|More/Less|Single entity type|Indirect
P681
Q5058355 Q181394
USER
Which cellular components are components of lesser number of nutrients than that cellular component ?
(c(Q181394),P681,c(Q5058355))
action less
action find_reverse_tuple_counts
relation P681
type Q5058355
type Q181394
action count
action filter_type
action find_reverse
entity Q14329032
relation P681
type Q181394
[{'concept': 'Q181394'}, 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?t WHERE { { SELECT DISTINCT ?t ( COUNT ( ?k ) AS ?v ) WHERE { ?t rdf:type ontology:Q5058355 . ?k rdf:type ontology:Q181394 . ?k property:P681 ?t } GROUP BY ?t } . { SELECT DISTINCT ( COUNT ( ?j ) AS ?e ) WHERE { ?j rdf:type ontology:Q181394 . ?j property:P681 resource:Q14329032 } } . FILTER ( ?v < ?e ) }
action less
action find_reverse_tuple_counts
relation cell component
type cellular component
type nutrient
action count
action filter_type
action find_reverse
entity endoplasmic reticulum membrane
relation cell component
type nutrient
[{'concept': 'nutrient'}, 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?t WHERE { { SELECT DISTINCT ?t ( COUNT ( ?k ) AS ?v ) WHERE { ?t rdf:type ontology:cellular_component . ?k rdf:type ontology:nutrient . ?k property:cell_component ?t } GROUP BY ?t } . { SELECT DISTINCT ( COUNT ( ?j ) AS ?e ) WHERE { ?j rdf:type ontology:nutrient . ?j property:cell_component resource:endoplasmic_reticulum_membrane } } . FILTER ( ?v < ?e ) }
[]
cellular component nutrient
Q14912978 Q24576567 Q22326799
SYSTEM
mitochondrial nucleoid, perisynaptic extracellular matrix, alpha-1,6-mannosyltransferase complex
Q7322268 Q21106124 Q21978575 Q21116315 Q14912978 Q14864171 Q21108229 Q22328732 Q21110192 Q21146508 Q14878067 Q14864978 Q24629101 Q14864977 Q14864971 Q1604780 Q21124326 Q21116899 Q14860843 Q22327688 Q22327479 Q22327686 Q14330626 Q22327683 Q21172343 Q21172341 Q24576567 Q21108045 Q671136 Q22326188 Q21469807 Q14877465 Q189094 Q14876131 Q24629096 Q22328493 Q21120634 Q14864391 Q14864390 Q14914004 Q21095183 Q14873624 Q21199165 Q14905221 Q22326802 Q21199358 Q21759948 Q21097473 Q21105647 Q21198643 Q21106212 Q21423046 Q14864382 Q14353100 Q22326799 Q14911512 Q22325164 Q26253851 Q21136996 Q21103154 Q14863372 Q21181370 Q420927 Q22327404 Q22327654 Q22327015 Q21109092 Q22327525 Q14905147 Q22329412 Q180436 Q22327092 Q21763002 Q15320191 Q21971414 Q21095089 Q22327884 Q14819352 Q21118409 Q14762605 Q14864266 Q21108411 Q21750262 Q21468808 Q21198990 Q21104759 Q14876059 Q21484280 Q21758669 Q22329407 Q22328605 Q14877492 Q14873267 Q22327128 Q21760978 Q21107992 Q22328801 Q5419646 Q21126899 Q14819441 Q1640852 Q21107481 Q21105674 Q21097505 Q22327033 Q14864663 Q14863683 Q21102478 Q14349538 Q22328819 Q138639 Q21120639 Q14330629 Q776995 Q21971286 Q21105988 Q21095308 Q21115425 Q14864857 Q14888035 Q1065756 Q22326843 Q180951 Q7168931 Q14906187 Q22327475 Q14864520 Q21112489 Q22328743 Q22328105 Q14860546 Q14860540 Q14864866 Q22328121 Q899827 Q6414172 Q21109697 Q22327736 Q14906135 Q22326919 Q14882095 Q21095620 Q193825 Q22327423
(c(Q181394),P681,c(Q5058355))
action less
action find_reverse_tuple_counts
relation P681
type Q5058355
type Q181394
action count
action filter_type
action find_reverse
entity Q14329032
relation P681
type Q181394
[ANSWERS] are components of lesser number of nutrients than that cellular component
[{'concept': 'Q181394'}, 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?t WHERE { { SELECT DISTINCT ?t ( COUNT ( ?k ) AS ?v ) WHERE { ?t rdf:type ontology:Q5058355 . ?k rdf:type ontology:Q181394 . ?k property:P681 ?t } GROUP BY ?t } . { SELECT DISTINCT ( COUNT ( ?j ) AS ?e ) WHERE { ?j rdf:type ontology:Q181394 . ?j property:P681 resource:Q14329032 } } . FILTER ( ?v < ?e ) }
ribbon synapse viral capsid tripartite ATP-independent periplasmic transporter complex viral nucleocapsid mitochondrial nucleoid cell periphery subapical complex Pex17p-Pex14p docking complex organelle membrane contact site mucus layer organelle membrane lipopolysaccharide receptor complex glutamatergic synapse plasma membrane part succinate dehydrogenase complex hemidesmosome protein serine/threonine phosphatase complex complement component C1 complex nuclear outer membrane prospore membrane leading edge presynapse prospore membrane myelin sheath abaxonal region eisosome inner dense plaque of desmosome outer dense plaque of desmosome perisynaptic extracellular matrix molybdopterin synthase complex synaptic vesicle aster dolichyl-phosphate-mannose-protein mannosyltransferase complex receptor complex cell surface compact myelin GABA-ergic synapse cell envelope Sec protein transport complex interleukin-12 complex intracellular organelle synaptic vesicle membrane synaptic membrane dendritic spine head intercellular bridge type III protein secretion system complex symbiont-containing vacuole membrane endoplasmic reticulum palmitoyltransferase complex bacterial nucleoid NADH dehydrogenase complex cell pole transmembrane transporter complex riboflavin synthase complex GPI-anchor transamidase complex membrane-bounded organelle presynaptic active zone cell projection alpha-1,6-mannosyltransferase complex stereocilium protein-lipid complex integral component of spine apparatus membrane immunoglobulin complex, circulating inhibitory synapse myelin sheath outer membrane protein complex ribonucleoprotein complex annulate lamellae photosystem II oxygen evolving complex nuclear outer membrane-endoplasmic reticulum membrane network cytoplasmic side of dendritic spine plasma membrane intrinsic component of membrane cytoophidium cilium protein complex involved in cell adhesion polyphosphate kinase complex synaptic cleft plasma lipoprotein particle blood microparticle cellular bud respiratory chain hyaluranon cable midbody cell-substrate junction CNTFR-CLCF1 complex cell division site retromer, tubulation complex periplasmic space perinuclear endoplasmic reticulum membrane phosphatidylinositol 3-kinase complex retromer, cargo-selective complex type II protein secretion system complex envelope PET complex lateral loop cell-cell junction fatty acid beta-oxidation multienzyme complex type I protein secretion system complex ER ubiquitin ligase complex TRAPPI protein complex excitatory synapse cell tip fibrinogen complex Schmidt-Lanterman incisure site of polarized growth Nem1-Spo7 phosphatase complex dendritic spine neck DNA repair complex transcriptional repressor complex insulin-like growth factor binding protein complex other organism cell apical part of cell HICS complex peroxisome interleukin-23 complex myelin sheath adaxonal region neuromuscular junction oligosaccharyltransferase complex stereocilium membrane retromer complex Ire1 complex cell leading edge protein-DNA complex melanosome Dsc E3 ubiquitin ligase complex chromatin perivitelline space CRLF-CLCF1 complex postsynapse extrinsic component of membrane stereocilium tip RNA cap binding complex cell septum basal part of cell clathrin-coated pit cell body intracellular immature spore endomembrane system kinocilium cyclin-dependent protein kinase 5 holoenzyme complex chaperone-mediated autophagy translocation complex contractile ring aspartate carbamoyltransferase complex angiogenin-PRI complex Flemming body extracellular matrix extracellular organelle
Mitochondrial nucleoid, perisynaptic extracellular matrix and alpha-1,6-mannosyltransferase complex are components of lesser number of nutrients than that cellular component
mitochondrial nucleoid perisynaptic extracellular matrix alpha-1,6-mannosyltransferase complex
action less
action find_reverse_tuple_counts
relation cell component
type cellular component
type nutrient
action count
action filter_type
action find_reverse
entity endoplasmic reticulum membrane
relation cell component
type nutrient
[{'concept': 'nutrient'}, 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?t WHERE { { SELECT DISTINCT ?t ( COUNT ( ?k ) AS ?v ) WHERE { ?t rdf:type ontology:cellular_component . ?k rdf:type ontology:nutrient . ?k property:cell_component ?t } GROUP BY ?t } . { SELECT DISTINCT ( COUNT ( ?j ) AS ?e ) WHERE { ?j rdf:type ontology:nutrient . ?j property:cell_component resource:endoplasmic_reticulum_membrane } } . FILTER ( ?v < ?e ) }
[]