Simple Question (Direct)
Simple Question
Q27547670
P682
Q3249551
USER
What is the process that bifunctional ATP-dependent DNA helicase/ssDNA endodeoxyribonuclease DNA2 YHR164C is involved in ?
(Q27547670,P682,c(Q3249551))
action filter_type
action find
entity Q27547670
relation P682
type Q3249551
['Q27547670', 'P682', {'concept': 'Q3249551'}]
SELECT DISTINCT ?d WHERE { resource:Q27547670 property:P682 ?d . ?d rdf:type ontology:Q3249551 }
bifunctional ATP-dependent DNA helicase/ssDNA endodeoxyribonuclease DNA2 YHR164C
action filter_type
action find
entity bifunctional ATP-dependent DNA helicase/ssDNA endodeoxyribonuclease DNA2 YHR164C
relation biological process
type process
['bifunctional ATP-dependent DNA helicase/ssDNA endodeoxyribonuclease DNA2 YHR164C', 'biological process', {'concept': 'process'}]
SELECT DISTINCT ?d WHERE { resource:bifunctional_ATP-dependent_DNA_helicase/ssDNA_endodeoxyribonuclease_DNA2_YHR164C property:biological_process ?d . ?d rdf:type ontology:process }
[]
process
Q1057
SYSTEM
metabolic process
Q1057
(Q27547670,P682,c(Q3249551))
action filter_type
action find
entity Q27547670
relation P682
type Q3249551
The process that bifunctional ATP-dependent DNA helicase / ssDNA endodeoxyribonuclease DNA2 YHR 164 C is involved in is p [ANSWER]
['Q27547670', 'P682', {'concept': 'Q3249551'}]
SELECT DISTINCT ?d WHERE { resource:Q27547670 property:P682 ?d . ?d rdf:type ontology:Q3249551 }
metabolic process
The process that bifunctional ATP-dependent DNA helicase / ssDNA endodeoxyribonuclease DNA2 YHR 164 C is involved in is p metabolic process
metabolic process
action filter_type
action find
entity bifunctional ATP-dependent DNA helicase/ssDNA endodeoxyribonuclease DNA2 YHR164C
relation biological process
type process
['bifunctional ATP-dependent DNA helicase/ssDNA endodeoxyribonuclease DNA2 YHR164C', 'biological process', {'concept': 'process'}]
SELECT DISTINCT ?d WHERE { resource:bifunctional_ATP-dependent_DNA_helicase/ssDNA_endodeoxyribonuclease_DNA2_YHR164C property:biological_process ?d . ?d rdf:type ontology:process }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q27547670
P688
Q863908
USER
Which nucleic acid sequence encodes bifunctional ATP-dependent DNA helicase/ssDNA endodeoxyribonuclease DNA2 YHR164C ?
(c(Q863908),P688,Q27547670)
action filter_type
action find_reverse
entity Q27547670
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q27547670']
SELECT DISTINCT ?h WHERE { ?h property:P688 resource:Q27547670 . ?h rdf:type ontology:Q863908 }
bifunctional ATP-dependent DNA helicase/ssDNA endodeoxyribonuclease DNA2 YHR164C
action filter_type
action find_reverse
entity bifunctional ATP-dependent DNA helicase/ssDNA endodeoxyribonuclease DNA2 YHR164C
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'bifunctional ATP-dependent DNA helicase/ssDNA endodeoxyribonuclease DNA2 YHR164C']
SELECT DISTINCT ?h WHERE { ?h property:encodes resource:bifunctional_ATP-dependent_DNA_helicase/ssDNA_endodeoxyribonuclease_DNA2_YHR164C . ?h rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q27540475
SYSTEM
bifunctional ATP-dependent DNA helicase/ssDNA endodeoxyribonuclease DNA2 YHR164C
Q27540475
(c(Q863908),P688,Q27547670)
action filter_type
action find_reverse
entity Q27547670
relation P688
type Q863908
[ANSWER] encodes [ANSWER]
[{'concept': 'Q863908'}, 'P688', 'Q27547670']
SELECT DISTINCT ?h WHERE { ?h property:P688 resource:Q27547670 . ?h rdf:type ontology:Q863908 }
bifunctional ATP-dependent DNA helicase/ssDNA endodeoxyribonuclease DNA2 YHR164C
Bifunctional ATP-dependent DNA helicase/ssDNA endodeoxyribonuclease DNA2 YHR164C encodes bifunctional ATP-dependent DNA helicase/ssDNA endodeoxyribonuclease DNA2 YHR164C
bifunctional ATP-dependent DNA helicase/ssDNA endodeoxyribonuclease DNA2 YHR164C
action filter_type
action find_reverse
entity bifunctional ATP-dependent DNA helicase/ssDNA endodeoxyribonuclease DNA2 YHR164C
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'bifunctional ATP-dependent DNA helicase/ssDNA endodeoxyribonuclease DNA2 YHR164C']
SELECT DISTINCT ?h WHERE { ?h property:encodes resource:bifunctional_ATP-dependent_DNA_helicase/ssDNA_endodeoxyribonuclease_DNA2_YHR164C . ?h rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q27540475
P703
Q631147
USER
What is the taxon to which that nucleic acid sequence belongs to ?
(Q27540475,P703,c(Q631147))
action filter_type
action find
entity Q27540475
relation P703
type Q631147
['Q27540475', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?n WHERE { resource:Q27540475 property:P703 ?n . ?n rdf:type ontology:Q631147 }
bifunctional ATP-dependent DNA helicase/ssDNA endodeoxyribonuclease DNA2 YHR164C
action filter_type
action find
entity bifunctional ATP-dependent DNA helicase/ssDNA endodeoxyribonuclease DNA2 YHR164C
relation found in taxon
type infraspecific name
['bifunctional ATP-dependent DNA helicase/ssDNA endodeoxyribonuclease DNA2 YHR164C', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?n WHERE { resource:bifunctional_ATP-dependent_DNA_helicase/ssDNA_endodeoxyribonuclease_DNA2_YHR164C property:found_in_taxon ?n . ?n rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q27510868
SYSTEM
Saccharomyces cerevisiae S288c
Q27510868
(Q27540475,P703,c(Q631147))
action filter_type
action find
entity Q27540475
relation P703
type Q631147
[ANSWER]
['Q27540475', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?n WHERE { resource:Q27540475 property:P703 ?n . ?n rdf:type ontology:Q631147 }
Saccharomyces cerevisiae S288c
Saccharomyces cerevisiae S288c
Saccharomyces cerevisiae S288c
action filter_type
action find
entity bifunctional ATP-dependent DNA helicase/ssDNA endodeoxyribonuclease DNA2 YHR164C
relation found in taxon
type infraspecific name
['bifunctional ATP-dependent DNA helicase/ssDNA endodeoxyribonuclease DNA2 YHR164C', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?n WHERE { resource:bifunctional_ATP-dependent_DNA_helicase/ssDNA_endodeoxyribonuclease_DNA2_YHR164C property:found_in_taxon ?n . ?n rdf:type ontology:infraspecific_name }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation|Incomplete
Q23395037 Q27540475
P703
Q631147
USER
Or LysR substrate-binding    Caur_3204?
OR((Q27540475,P703,c(Q631147)), (Q23395037,P703,c(Q631147)))
action filter_type
action union
action find
entity Q27540475
relation P703
action find
entity Q23395037
relation P703
type Q631147
{'OR': [['Q27540475', 'P703', {'concept': 'Q631147'}], ['Q23395037', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?o WHERE { { { resource:Q23395037 property:P703 ?o } UNION { resource:Q27540475 property:P703 ?o } } . ?o rdf:type ontology:Q631147 }
LysR substrate-binding    Caur_3204 bifunctional ATP-dependent DNA helicase/ssDNA endodeoxyribonuclease DNA2 YHR164C
action filter_type
action union
action find
entity bifunctional ATP-dependent DNA helicase/ssDNA endodeoxyribonuclease DNA2 YHR164C
relation found in taxon
action find
entity LysR substrate-binding    Caur_3204
relation found in taxon
type infraspecific name
{'OR': [['bifunctional ATP-dependent DNA helicase/ssDNA endodeoxyribonuclease DNA2 YHR164C', 'found in taxon', {'concept': 'infraspecific name'}], ['LysR substrate-binding    Caur_3204', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?o WHERE { { { resource:LysR_substrate-binding____Caur_3204 property:found_in_taxon ?o } UNION { resource:bifunctional_ATP-dependent_DNA_helicase/ssDNA_endodeoxyribonuclease_DNA2_YHR164C property:found_in_taxon ?o } } . ?o rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q27510868 Q21102955
SYSTEM
Saccharomyces cerevisiae S288c, Chloroflexus aurantiacus J-10-fl
Q27510868 Q21102955
OR((Q27540475,P703,c(Q631147)), (Q23395037,P703,c(Q631147)))
action filter_type
action union
action find
entity Q27540475
relation P703
action find
entity Q23395037
relation P703
type Q631147
[ANSWERS]
{'OR': [['Q27540475', 'P703', {'concept': 'Q631147'}], ['Q23395037', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?o WHERE { { { resource:Q23395037 property:P703 ?o } UNION { resource:Q27540475 property:P703 ?o } } . ?o rdf:type ontology:Q631147 }
Saccharomyces cerevisiae S288c Chloroflexus aurantiacus J-10-fl
Saccharomyces cerevisiae S288c Chloroflexus aurantiacus J-10-fl
action filter_type
action union
action find
entity bifunctional ATP-dependent DNA helicase/ssDNA endodeoxyribonuclease DNA2 YHR164C
relation found in taxon
action find
entity LysR substrate-binding    Caur_3204
relation found in taxon
type infraspecific name
{'OR': [['bifunctional ATP-dependent DNA helicase/ssDNA endodeoxyribonuclease DNA2 YHR164C', 'found in taxon', {'concept': 'infraspecific name'}], ['LysR substrate-binding    Caur_3204', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?o WHERE { { { resource:LysR_substrate-binding____Caur_3204 property:found_in_taxon ?o } UNION { resource:bifunctional_ATP-dependent_DNA_helicase/ssDNA_endodeoxyribonuclease_DNA2_YHR164C property:found_in_taxon ?o } } . ?o rdf:type ontology:infraspecific_name }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q21687233 Q23395037
P688
Q181394
USER
Which nutrients are LysR substrate-binding    Caur_3204 or 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB    TTHA0296 an encoding of ?
OR((Q23395037,P688,c(Q181394)), (Q21687233,P688,c(Q181394)))
action filter_type
action union
action find
entity Q23395037
relation P688
action find
entity Q21687233
relation P688
type Q181394
{'OR': [['Q23395037', 'P688', {'concept': 'Q181394'}], ['Q21687233', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?q WHERE { { { resource:Q23395037 property:P688 ?q } UNION { resource:Q21687233 property:P688 ?q } } . ?q rdf:type ontology:Q181394 }
23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB    TTHA0296 LysR substrate-binding    Caur_3204
action filter_type
action union
action find
entity LysR substrate-binding    Caur_3204
relation encodes
action find
entity 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB    TTHA0296
relation encodes
type nutrient
{'OR': [['LysR substrate-binding    Caur_3204', 'encodes', {'concept': 'nutrient'}], ["23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB    TTHA0296", 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?q WHERE { { { resource:LysR_substrate-binding____Caur_3204 property:encodes ?q } UNION { resource:23S_rRNA_(guanosine(2251)-2'-O)-methyltransferase_RlmB____TTHA0296 property:encodes ?q } } . ?q rdf:type ontology:nutrient }
[]
nutrient
Q23475207 Q21756587
SYSTEM
LysR substrate-binding    Caur_3204, 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB    TTHA0296
Q23475207 Q21756587
OR((Q23395037,P688,c(Q181394)), (Q21687233,P688,c(Q181394)))
action filter_type
action union
action find
entity Q23395037
relation P688
action find
entity Q21687233
relation P688
type Q181394
[ANSWERS]
{'OR': [['Q23395037', 'P688', {'concept': 'Q181394'}], ['Q21687233', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?q WHERE { { { resource:Q23395037 property:P688 ?q } UNION { resource:Q21687233 property:P688 ?q } } . ?q rdf:type ontology:Q181394 }
LysR substrate-binding    Caur_3204 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB    TTHA0296
LysR substrate-binding Caur 3204 and 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB TTHA0296 are LysR substrate-binding Caur_3204 or 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB TTHA0296 an encoding of
LysR substrate-binding    Caur_3204 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB    TTHA0296
action filter_type
action union
action find
entity LysR substrate-binding    Caur_3204
relation encodes
action find
entity 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB    TTHA0296
relation encodes
type nutrient
{'OR': [['LysR substrate-binding    Caur_3204', 'encodes', {'concept': 'nutrient'}], ["23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB    TTHA0296", 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?q WHERE { { { resource:LysR_substrate-binding____Caur_3204 property:encodes ?q } UNION { resource:23S_rRNA_(guanosine(2251)-2'-O)-methyltransferase_RlmB____TTHA0296 property:encodes ?q } } . ?q rdf:type ontology:nutrient }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P101
Q3249551 Q502895 Q43229
USER
How many processes are the field of work of around 4 people and organizations ?
(c(Q502895)|c(Q43229),P101,c(Q3249551))
action count
action approx
action union
action find_reverse_tuple_counts
relation P101
type Q3249551
type Q502895
action find_reverse_tuple_counts
relation P101
type Q3249551
type Q43229
value 4
[[{'concept': 'Q502895'}, {'concept': 'Q43229'}], 'P101', {'concept': 'Q3249551'}]
SELECT DISTINCT ( COUNT ( ?t ) AS ?v ) WHERE { { SELECT DISTINCT ?t ( COUNT ( ?i ) AS ?x ) WHERE { VALUES ( ?k ) { ( ontology:Q502895 ) ( ontology:Q43229 ) } . ?i rdf:type ?k } GROUP BY ?t } . FILTER ( ?x = 4 ) }
action count
action approx
action union
action find_reverse_tuple_counts
relation field of work
type process
type common name
action find_reverse_tuple_counts
relation field of work
type process
type organization
value 4
[[{'concept': 'common name'}, {'concept': 'organization'}], 'field of work', {'concept': 'process'}]
SELECT DISTINCT ( COUNT ( ?t ) AS ?v ) WHERE { { SELECT DISTINCT ?t ( COUNT ( ?i ) AS ?x ) WHERE { VALUES ( ?k ) { ( ontology:common_name ) ( ontology:organization ) } . ?i rdf:type ?k } GROUP BY ?t } . FILTER ( ?x = 4 ) }
[]
process common name organization
SYSTEM
16
Q134995 Q253140 Q273499 Q852186 Q898912 Q192275 Q82264 Q8366 Q750843 Q42240 Q1057 Q173514 Q38695 Q1152135 Q1455196 Q4986607
(c(Q502895)|c(Q43229),P101,c(Q3249551))
action count
action approx
action union
action find_reverse_tuple_counts
relation P101
type Q3249551
type Q502895
action find_reverse_tuple_counts
relation P101
type Q3249551
type Q43229
value 4
[ANSWER]
[[{'concept': 'Q502895'}, {'concept': 'Q43229'}], 'P101', {'concept': 'Q3249551'}]
SELECT DISTINCT ( COUNT ( ?t ) AS ?v ) WHERE { { SELECT DISTINCT ?t ( COUNT ( ?i ) AS ?x ) WHERE { VALUES ( ?k ) { ( ontology:Q502895 ) ( ontology:Q43229 ) } . ?i rdf:type ?k } GROUP BY ?t } . FILTER ( ?x = 4 ) }
bibliography viticulture chemical synthesis mushroom poisoning Coupling reaction phosphorescence catalysis algorithm information processing research metabolic process food preservation cooking unsupervised learning Language education Building services engineering
16
action count
action approx
action union
action find_reverse_tuple_counts
relation field of work
type process
type common name
action find_reverse_tuple_counts
relation field of work
type process
type organization
value 4
[[{'concept': 'common name'}, {'concept': 'organization'}], 'field of work', {'concept': 'process'}]
SELECT DISTINCT ( COUNT ( ?t ) AS ?v ) WHERE { { SELECT DISTINCT ?t ( COUNT ( ?i ) AS ?x ) WHERE { VALUES ( ?k ) { ( ontology:common_name ) ( ontology:organization ) } . ?i rdf:type ?k } GROUP BY ?t } . FILTER ( ?x = 4 ) }
[]
Simple Question (Ellipsis)
Incomplete|object parent is changed, subject and predicate remain same
Q21687233
Q16521
USER
And which taxon?
(Q21687233,P703,c(Q16521))
action filter_type
action find
entity Q21687233
relation P703
type Q16521
['Q21687233', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?k WHERE { resource:Q21687233 property:P703 ?k . ?k rdf:type ontology:Q16521 }
23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB    TTHA0296
action filter_type
action find
entity 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB    TTHA0296
relation found in taxon
type taxon
["23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB    TTHA0296", 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?k WHERE { resource:23S_rRNA_(guanosine(2251)-2'-O)-methyltransferase_RlmB____TTHA0296 property:found_in_taxon ?k . ?k rdf:type ontology:taxon }
[]
taxon
Q21065233
SYSTEM
Thermus thermophilus HB8
Q21065233
(Q21687233,P703,c(Q16521))
action filter_type
action find
entity Q21687233
relation P703
type Q16521
[ANSWER]
['Q21687233', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?k WHERE { resource:Q21687233 property:P703 ?k . ?k rdf:type ontology:Q16521 }
Thermus thermophilus HB8
Thermus thermophilus HB8
action filter_type
action find
entity 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB    TTHA0296
relation found in taxon
type taxon
["23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB    TTHA0296", 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?k WHERE { resource:23S_rRNA_(guanosine(2251)-2'-O)-methyltransferase_RlmB____TTHA0296 property:found_in_taxon ?k . ?k rdf:type ontology:taxon }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q21065233 Q21766177
P703
Q181394
USER
Does hypothetical protein    TTHB135 specy belongs to the taxon that one ?
(Q21766177,P703,Q21065233)
action is_in
entity Q21065233
action find
entity Q21766177
relation P703
['Q21766177', 'P703', 'Q21065233']
ASK WHERE { resource:Q21766177 property:P703 resource:Q21065233 }
Thermus thermophilus HB8 hypothetical protein    TTHB135
action is_in
entity Thermus thermophilus HB8
action find
entity hypothetical protein    TTHB135
relation found in taxon
['hypothetical protein    TTHB135', 'found in taxon', 'Thermus thermophilus HB8']
ASK WHERE { resource:hypothetical_protein____TTHB135 property:found_in_taxon resource:Thermus_thermophilus_HB8 }
[]
nutrient
SYSTEM
YES
(Q21766177,P703,Q21065233)
action is_in
entity Q21065233
action find
entity Q21766177
relation P703
[ANSWER]
['Q21766177', 'P703', 'Q21065233']
ASK WHERE { resource:Q21766177 property:P703 resource:Q21065233 }
Yes
action is_in
entity Thermus thermophilus HB8
action find
entity hypothetical protein    TTHB135
relation found in taxon
['hypothetical protein    TTHB135', 'found in taxon', 'Thermus thermophilus HB8']
ASK WHERE { resource:hypothetical_protein____TTHB135 property:found_in_taxon resource:Thermus_thermophilus_HB8 }
[]