Simple Question (Direct)
Simple Question
Q21143545
P703
Q16521
USER
Where is Hexosyltransferase found ?
(Q21143545,P703,c(Q16521))
action filter_type
action find
entity Q21143545
relation P703
type Q16521
['Q21143545', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?m WHERE { resource:Q21143545 property:P703 ?m . ?m rdf:type ontology:Q16521 }
Hexosyltransferase
action filter_type
action find
entity Hexosyltransferase
relation found in taxon
type taxon
['Hexosyltransferase', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?m WHERE { resource:Hexosyltransferase property:found_in_taxon ?m . ?m rdf:type ontology:taxon }
[]
taxon
Q15978631
SYSTEM
Homo sapiens
Q15978631
(Q21143545,P703,c(Q16521))
action filter_type
action find
entity Q21143545
relation P703
type Q16521
Hexosyltransferase is found in [ANSWER]
['Q21143545', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?m WHERE { resource:Q21143545 property:P703 ?m . ?m rdf:type ontology:Q16521 }
Homo sapiens
Hexosyltransferase is found in Homo sapiens
Homo sapiens
action filter_type
action find
entity Hexosyltransferase
relation found in taxon
type taxon
['Hexosyltransferase', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?m WHERE { resource:Hexosyltransferase property:found_in_taxon ?m . ?m rdf:type ontology:taxon }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21143545
P681
Q15989253
USER
What is a component of that nutrient ?
(Q15978631,P681,c(Q15989253))
action filter_type
action find
entity Q21143545
relation P681
type Q15989253
['Q15978631', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?n WHERE { resource:Q21143545 property:P681 ?n . ?n rdf:type ontology:Q15989253 }
Hexosyltransferase
action filter_type
action find
entity Hexosyltransferase
relation cell component
type part
['Homo sapiens', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?n WHERE { resource:Hexosyltransferase property:cell_component ?n . ?n rdf:type ontology:part }
[]
part
Q14349455
SYSTEM
membrane
Q14349455
(Q15978631,P681,c(Q15989253))
action filter_type
action find
entity Q21143545
relation P681
type Q15989253
A component of that nutrient is a [ANSWER]
['Q15978631', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?n WHERE { resource:Q21143545 property:P681 ?n . ?n rdf:type ontology:Q15989253 }
membrane
A component of that nutrient is a membrane
membrane
action filter_type
action find
entity Hexosyltransferase
relation cell component
type part
['Homo sapiens', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?n WHERE { resource:Hexosyltransferase property:cell_component ?n . ?n rdf:type ontology:part }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23510007 Q21143545
P688
Q863908
USER
Which nucleic acid sequences encodes Hexosyltransferase or acetoin transport repressor    BC4076 ?
OR((c(Q863908),P688,Q21143545), (c(Q863908),P688,Q23510007))
action filter_type
action union
action find_reverse
entity Q21143545
relation P688
action find_reverse
entity Q23510007
relation P688
type Q863908
{'OR': [[{'concept': 'Q863908'}, 'P688', 'Q21143545'], [{'concept': 'Q863908'}, 'P688', 'Q23510007']]}
SELECT DISTINCT ?z WHERE { { VALUES ( ?l ) { ( resource:Q23510007 ) ( resource:Q21143545 ) } . ?z property:P688 ?l } . ?z rdf:type ontology:Q863908 }
acetoin transport repressor    BC4076 Hexosyltransferase
action filter_type
action union
action find_reverse
entity Hexosyltransferase
relation encodes
action find_reverse
entity acetoin transport repressor    BC4076
relation encodes
type nucleic acid sequence
{'OR': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'Hexosyltransferase'], [{'concept': 'nucleic acid sequence'}, 'encodes', 'acetoin transport repressor    BC4076']]}
SELECT DISTINCT ?z WHERE { { VALUES ( ?l ) { ( resource:acetoin_transport_repressor____BC4076 ) ( resource:Hexosyltransferase ) } . ?z property:encodes ?l } . ?z rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18033231 Q23191567
SYSTEM
B3GALNT1, acetoin transport repressor    BC4076
Q18033231 Q23191567
OR((c(Q863908),P688,Q21143545), (c(Q863908),P688,Q23510007))
action filter_type
action union
action find_reverse
entity Q21143545
relation P688
action find_reverse
entity Q23510007
relation P688
type Q863908
[ANSWERS]
{'OR': [[{'concept': 'Q863908'}, 'P688', 'Q21143545'], [{'concept': 'Q863908'}, 'P688', 'Q23510007']]}
SELECT DISTINCT ?z WHERE { { VALUES ( ?l ) { ( resource:Q23510007 ) ( resource:Q21143545 ) } . ?z property:P688 ?l } . ?z rdf:type ontology:Q863908 }
B3GALNT1 acetoin transport repressor    BC4076
B3GALNT1 and acetoin transport repressor BC4076 encode Hexosyltransferase or acetoin transport repressor BC4076
B3GALNT1 acetoin transport repressor    BC4076
action filter_type
action union
action find_reverse
entity Hexosyltransferase
relation encodes
action find_reverse
entity acetoin transport repressor    BC4076
relation encodes
type nucleic acid sequence
{'OR': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'Hexosyltransferase'], [{'concept': 'nucleic acid sequence'}, 'encodes', 'acetoin transport repressor    BC4076']]}
SELECT DISTINCT ?z WHERE { { VALUES ( ?l ) { ( resource:acetoin_transport_repressor____BC4076 ) ( resource:Hexosyltransferase ) } . ?z property:encodes ?l } . ?z rdf:type ontology:nucleic_acid_sequence }
[]
Clarification
Simple Question|Single Entity|Indirect
Q18033231
P684
Q863908
USER
Which is the species that has that one as its orthologous gene ?
(c(Q863908),P684,Q18033231)
action filter_type
action find
entity Q18033231
relation P684
type Q863908
[{'concept': 'Q863908'}, 'P684', 'Q18033231']
SELECT DISTINCT ?r WHERE { resource:Q18033231 property:P684 ?r . ?r rdf:type ontology:Q863908 }
B3GALNT1
action filter_type
action find
entity B3GALNT1
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'B3GALNT1']
SELECT DISTINCT ?r WHERE { resource:B3GALNT1 property:ortholog ?r . ?r rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Clarification for simple ques.
Q18033231
SYSTEM
Did you mean B3GALNT1 ?
Q18033231 Q23191567
(c(Q863908),P684,Q18033231) (c(Q863908),P684,Q23191567)
[ANSWER]
[{'concept': 'Q863908'}, 'P684', 'Q18033231'] [{'concept': 'Q863908'}, 'P684', 'Q23191567']
SELECT DISTINCT ?r WHERE { resource:Q18033231 property:P684 ?r . ?r rdf:type ontology:Q863908 }
B3GALNT1 acetoin transport repressor    BC4076
Did you mean B3GALNT1 ?
B3GALNT1
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'B3GALNT1'] [{'concept': 'nucleic acid sequence'}, 'ortholog', 'acetoin transport repressor    BC4076']
SELECT DISTINCT ?r WHERE { resource:B3GALNT1 property:ortholog ?r . ?r rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
USER
Yes
(c(Q863908),P684,Q18033231)
[{'concept': 'Q863908'}, 'P684', 'Q18033231']
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'B3GALNT1']
[]
Q18255819
SYSTEM
B3galnt1
Q18255819
(c(Q863908),P684,Q18033231)
action filter_type
action find
entity Q18033231
relation P684
type Q863908
[ANSWER] is the species that has that one as its orthologous gene
[{'concept': 'Q863908'}, 'P684', 'Q18033231']
SELECT DISTINCT ?r WHERE { resource:Q18033231 property:P684 ?r . ?r rdf:type ontology:Q863908 }
B3galnt1
B3galnt1 is the species that has that one as its orthologous gene
B3galnt1
action filter_type
action find
entity B3GALNT1
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'B3GALNT1']
SELECT DISTINCT ?r WHERE { resource:B3GALNT1 property:ortholog ?r . ?r rdf:type ontology:nucleic_acid_sequence }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23515888 Q21143545
P688
Q863908
USER
Which nucleic acid sequences encodes Hexosyltransferase or hypothetical protein    BSU18780 ?
OR((c(Q863908),P688,Q21143545), (c(Q863908),P688,Q23515888))
action filter_type
action union
action find_reverse
entity Q21143545
relation P688
action find_reverse
entity Q23515888
relation P688
type Q863908
{'OR': [[{'concept': 'Q863908'}, 'P688', 'Q21143545'], [{'concept': 'Q863908'}, 'P688', 'Q23515888']]}
SELECT DISTINCT ?j WHERE { { ?j property:P688 ?z . VALUES ( ?z ) { ( resource:Q23515888 ) ( resource:Q21143545 ) } } . ?j rdf:type ontology:Q863908 }
hypothetical protein    BSU18780 Hexosyltransferase
action filter_type
action union
action find_reverse
entity Hexosyltransferase
relation encodes
action find_reverse
entity hypothetical protein    BSU18780
relation encodes
type nucleic acid sequence
{'OR': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'Hexosyltransferase'], [{'concept': 'nucleic acid sequence'}, 'encodes', 'hypothetical protein    BSU18780']]}
SELECT DISTINCT ?j WHERE { { ?j property:encodes ?z . VALUES ( ?z ) { ( resource:hypothetical_protein____BSU18780 ) ( resource:Hexosyltransferase ) } } . ?j rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23350447 Q18033231
SYSTEM
hypothetical protein    BSU18780, B3GALNT1
Q23350447 Q18033231
OR((c(Q863908),P688,Q21143545), (c(Q863908),P688,Q23515888))
action filter_type
action union
action find_reverse
entity Q21143545
relation P688
action find_reverse
entity Q23515888
relation P688
type Q863908
[ANSWERS]
{'OR': [[{'concept': 'Q863908'}, 'P688', 'Q21143545'], [{'concept': 'Q863908'}, 'P688', 'Q23515888']]}
SELECT DISTINCT ?j WHERE { { ?j property:P688 ?z . VALUES ( ?z ) { ( resource:Q23515888 ) ( resource:Q21143545 ) } } . ?j rdf:type ontology:Q863908 }
hypothetical protein    BSU18780 B3GALNT1
Hypothetical protein BSU18780 and B3GALNT1 encode Hexosyltransferase or hypothetical protein BSU18780
hypothetical protein    BSU18780 B3GALNT1
action filter_type
action union
action find_reverse
entity Hexosyltransferase
relation encodes
action find_reverse
entity hypothetical protein    BSU18780
relation encodes
type nucleic acid sequence
{'OR': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'Hexosyltransferase'], [{'concept': 'nucleic acid sequence'}, 'encodes', 'hypothetical protein    BSU18780']]}
SELECT DISTINCT ?j WHERE { { ?j property:encodes ?z . VALUES ( ?z ) { ( resource:hypothetical_protein____BSU18780 ) ( resource:Hexosyltransferase ) } } . ?j rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q24131864
P702
Q863908
USER
Which nucleic acid sequence encodes hypothetical protein    ECL_03046 ?
(Q24131864,P702,c(Q863908))
action filter_type
action find
entity Q24131864
relation P702
type Q863908
['Q24131864', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?n WHERE { resource:Q24131864 property:P702 ?n . ?n rdf:type ontology:Q863908 }
hypothetical protein    ECL_03046
action filter_type
action find
entity hypothetical protein    ECL_03046
relation encoded by
type nucleic acid sequence
['hypothetical protein    ECL_03046', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?n WHERE { resource:hypothetical_protein____ECL_03046 property:encoded_by ?n . ?n rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23079704
SYSTEM
hypothetical protein    ECL_03046
Q23079704
(Q24131864,P702,c(Q863908))
action filter_type
action find
entity Q24131864
relation P702
type Q863908
Hypothetical protein ECL 03046 encodes hypothetical protein ECL_03046
['Q24131864', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?n WHERE { resource:Q24131864 property:P702 ?n . ?n rdf:type ontology:Q863908 }
hypothetical protein    ECL_03046
Hypothetical protein ECL 03046 encodes hypothetical protein ECL_03046
hypothetical protein    ECL_03046
action filter_type
action find
entity hypothetical protein    ECL_03046
relation encoded by
type nucleic acid sequence
['hypothetical protein    ECL_03046', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?n WHERE { resource:hypothetical_protein____ECL_03046 property:encoded_by ?n . ?n rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q23079704 Q23506673
P702
Q181394
USER
Does that nucleic acid sequence encode subunit B of ATP-dependent exonuclease    L0252 ?
(Q23506673,P702,Q23079704)
action is_in
entity Q23506673
action find
entity Q23079704
relation P702
['Q23506673', 'P702', 'Q23079704']
ASK WHERE { resource:Q23079704 property:P702 resource:Q23506673 }
hypothetical protein    ECL_03046 subunit B of ATP-dependent exonuclease    L0252
action is_in
entity subunit B of ATP-dependent exonuclease    L0252
action find
entity hypothetical protein    ECL_03046
relation encoded by
['subunit B of ATP-dependent exonuclease    L0252', 'encoded by', 'hypothetical protein    ECL_03046']
ASK WHERE { resource:hypothetical_protein____ECL_03046 property:encoded_by resource:subunit_B_of_ATP-dependent_exonuclease____L0252 }
[]
nutrient
SYSTEM
NO
(Q23506673,P702,Q23079704)
action is_in
entity Q23506673
action find
entity Q23079704
relation P702
[ANSWER]
['Q23506673', 'P702', 'Q23079704']
ASK WHERE { resource:Q23079704 property:P702 resource:Q23506673 }
No
action is_in
entity subunit B of ATP-dependent exonuclease    L0252
action find
entity hypothetical protein    ECL_03046
relation encoded by
['subunit B of ATP-dependent exonuclease    L0252', 'encoded by', 'hypothetical protein    ECL_03046']
ASK WHERE { resource:hypothetical_protein____ECL_03046 property:encoded_by resource:subunit_B_of_ATP-dependent_exonuclease____L0252 }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q21143545 Q20864604
P702
Q863908
USER
Does Gm35887 encode Hexosyltransferase ?
(Q21143545,P702,Q20864604)
action is_in
entity Q20864604
action find
entity Q21143545
relation P702
['Q21143545', 'P702', 'Q20864604']
ASK WHERE { resource:Q21143545 property:P702 resource:Q20864604 }
Hexosyltransferase Gm35887
action is_in
entity Gm35887
action find
entity Hexosyltransferase
relation encoded by
['Hexosyltransferase', 'encoded by', 'Gm35887']
ASK WHERE { resource:Hexosyltransferase property:encoded_by resource:Gm35887 }
[]
nucleic acid sequence
SYSTEM
NO
(Q21143545,P702,Q20864604)
action is_in
entity Q20864604
action find
entity Q21143545
relation P702
[ANSWER]
['Q21143545', 'P702', 'Q20864604']
ASK WHERE { resource:Q21143545 property:P702 resource:Q20864604 }
No
action is_in
entity Gm35887
action find
entity Hexosyltransferase
relation encoded by
['Hexosyltransferase', 'encoded by', 'Gm35887']
ASK WHERE { resource:Hexosyltransferase property:encoded_by resource:Gm35887 }
[]