Simple Question (Direct)
Simple Question
Q23590577
P682
Q1057
USER
Which metabolic process is Probable cytochrome P450    MAB_3423 involved in ?
(Q23590577,P682,c(Q1057))
action filter_type
action find
entity Q23590577
relation P682
type Q1057
['Q23590577', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?r WHERE { resource:Q23590577 property:P682 ?r . ?r rdf:type ontology:Q1057 }
Probable cytochrome P450    MAB_3423
action filter_type
action find
entity Probable cytochrome P450    MAB_3423
relation biological process
type metabolic process
['Probable cytochrome P450    MAB_3423', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?r WHERE { resource:Probable_cytochrome_P450____MAB_3423 property:biological_process ?r . ?r rdf:type ontology:metabolic_process }
[]
metabolic process
Q14349764
SYSTEM
oxidation-reduction process
Q14349764
(Q23590577,P682,c(Q1057))
action filter_type
action find
entity Q23590577
relation P682
type Q1057
[ANSWER] is Probable cytochrome P450 MAB_3423 involved in
['Q23590577', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?r WHERE { resource:Q23590577 property:P682 ?r . ?r rdf:type ontology:Q1057 }
oxidation-reduction process
Oxidation-reduction process is Probable cytochrome P450 MAB_3423 involved in
oxidation-reduction process
action filter_type
action find
entity Probable cytochrome P450    MAB_3423
relation biological process
type metabolic process
['Probable cytochrome P450    MAB_3423', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?r WHERE { resource:Probable_cytochrome_P450____MAB_3423 property:biological_process ?r . ?r rdf:type ontology:metabolic_process }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q181394 Q8386 Q181394
USER
How many nutrients can interact with atleast 41 nutrients or drugs ?
(c(Q181394),P129,c(Q181394)|c(Q8386))
action count
action atleast
action union
action find_tuple_counts
relation P129
type Q181394
type Q181394
action find_tuple_counts
relation P129
type Q181394
type Q8386
value 41
[{'concept': 'Q181394'}, 'P129', [{'concept': 'Q181394'}, {'concept': 'Q8386'}]]
SELECT DISTINCT ( COUNT ( ?j ) AS ?c ) WHERE { { SELECT DISTINCT ?j ( COUNT ( ?o ) AS ?u ) WHERE { VALUES ( ?x ) { ( ontology:Q181394 ) ( ontology:Q8386 ) } . ?o rdf:type ?x } GROUP BY ?j } . FILTER ( ?u >= 41 ) }
action count
action atleast
action union
action find_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_tuple_counts
relation physically interacts with
type nutrient
type drug
value 41
[{'concept': 'nutrient'}, 'physically interacts with', [{'concept': 'nutrient'}, {'concept': 'drug'}]]
SELECT DISTINCT ( COUNT ( ?j ) AS ?c ) WHERE { { SELECT DISTINCT ?j ( COUNT ( ?o ) AS ?u ) WHERE { VALUES ( ?x ) { ( ontology:nutrient ) ( ontology:drug ) } . ?o rdf:type ?x } GROUP BY ?j } . FILTER ( ?u >= 41 ) }
[]
nutrient drug nutrient
SYSTEM
2
Q309513 Q1949517
(c(Q181394),P129,c(Q181394)|c(Q8386))
action count
action atleast
action union
action find_tuple_counts
relation P129
type Q181394
type Q181394
action find_tuple_counts
relation P129
type Q181394
type Q8386
value 41
[ANSWER]
[{'concept': 'Q181394'}, 'P129', [{'concept': 'Q181394'}, {'concept': 'Q8386'}]]
SELECT DISTINCT ( COUNT ( ?j ) AS ?c ) WHERE { { SELECT DISTINCT ?j ( COUNT ( ?o ) AS ?u ) WHERE { VALUES ( ?x ) { ( ontology:Q181394 ) ( ontology:Q8386 ) } . ?o rdf:type ?x } GROUP BY ?j } . FILTER ( ?u >= 41 ) }
Histamine H1 receptor 5-hydroxytryptamine receptor 2A
2
action count
action atleast
action union
action find_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_tuple_counts
relation physically interacts with
type nutrient
type drug
value 41
[{'concept': 'nutrient'}, 'physically interacts with', [{'concept': 'nutrient'}, {'concept': 'drug'}]]
SELECT DISTINCT ( COUNT ( ?j ) AS ?c ) WHERE { { SELECT DISTINCT ?j ( COUNT ( ?o ) AS ?u ) WHERE { VALUES ( ?x ) { ( ontology:nutrient ) ( ontology:drug ) } . ?o rdf:type ?x } GROUP BY ?j } . FILTER ( ?u >= 41 ) }
[]
Logical Reasoning (All)
Logical|Intersection|Single_Relation
Q24127697 Q23590577
P680
Q44424
USER
Which chemical bonds represent molecular function of Probable cytochrome P450    MAB_3423 and aminopeptidase B    EAE_00750 ?
AND((Q23590577,P680,c(Q44424)), (Q24127697,P680,c(Q44424)))
action filter_type
action intersection
action find
entity Q23590577
relation P680
action find
entity Q24127697
relation P680
type Q44424
{'AND': [['Q23590577', 'P680', {'concept': 'Q44424'}], ['Q24127697', 'P680', {'concept': 'Q44424'}]]}
SELECT DISTINCT ?o WHERE { resource:Q23590577 property:P680 ?o . resource:Q24127697 property:P680 ?o . ?o rdf:type ontology:Q44424 }
aminopeptidase B    EAE_00750 Probable cytochrome P450    MAB_3423
action filter_type
action intersection
action find
entity Probable cytochrome P450    MAB_3423
relation molecular function
action find
entity aminopeptidase B    EAE_00750
relation molecular function
type chemical bond
{'AND': [['Probable cytochrome P450    MAB_3423', 'molecular function', {'concept': 'chemical bond'}], ['aminopeptidase B    EAE_00750', 'molecular function', {'concept': 'chemical bond'}]]}
SELECT DISTINCT ?o WHERE { resource:Probable_cytochrome_P450____MAB_3423 property:molecular_function ?o . resource:aminopeptidase_B____EAE_00750 property:molecular_function ?o . ?o rdf:type ontology:chemical_bond }
[]
chemical bond
Q13667380
SYSTEM
metal ion binding
Q13667380
AND((Q23590577,P680,c(Q44424)), (Q24127697,P680,c(Q44424)))
action filter_type
action intersection
action find
entity Q23590577
relation P680
action find
entity Q24127697
relation P680
type Q44424
The [ANSWER] represent molecular function of Probable cytochrome P450 MAB_3423 and aminopeptidase B EAE_00750
{'AND': [['Q23590577', 'P680', {'concept': 'Q44424'}], ['Q24127697', 'P680', {'concept': 'Q44424'}]]}
SELECT DISTINCT ?o WHERE { resource:Q23590577 property:P680 ?o . resource:Q24127697 property:P680 ?o . ?o rdf:type ontology:Q44424 }
metal ion binding
The metal ion binding represent molecular function of Probable cytochrome P450 MAB_3423 and aminopeptidase B EAE_00750
metal ion binding
action filter_type
action intersection
action find
entity Probable cytochrome P450    MAB_3423
relation molecular function
action find
entity aminopeptidase B    EAE_00750
relation molecular function
type chemical bond
{'AND': [['Probable cytochrome P450    MAB_3423', 'molecular function', {'concept': 'chemical bond'}], ['aminopeptidase B    EAE_00750', 'molecular function', {'concept': 'chemical bond'}]]}
SELECT DISTINCT ?o WHERE { resource:Probable_cytochrome_P450____MAB_3423 property:molecular_function ?o . resource:aminopeptidase_B____EAE_00750 property:molecular_function ?o . ?o rdf:type ontology:chemical_bond }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23590577
P703
Q16521
USER
Which taxon is Probable cytochrome P450    MAB_3423 found in ?
(Q23590577,P703,c(Q16521))
action filter_type
action find
entity Q23590577
relation P703
type Q16521
['Q23590577', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?g WHERE { resource:Q23590577 property:P703 ?g . ?g rdf:type ontology:Q16521 }
Probable cytochrome P450    MAB_3423
action filter_type
action find
entity Probable cytochrome P450    MAB_3423
relation found in taxon
type taxon
['Probable cytochrome P450    MAB_3423', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?g WHERE { resource:Probable_cytochrome_P450____MAB_3423 property:found_in_taxon ?g . ?g rdf:type ontology:taxon }
[]
taxon
Q6946978
SYSTEM
Mycobacterium abscessus
Q6946978
(Q23590577,P703,c(Q16521))
action filter_type
action find
entity Q23590577
relation P703
type Q16521
Probable cytochrome P450 MAB_3423 is found in [ANSWER]
['Q23590577', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?g WHERE { resource:Q23590577 property:P703 ?g . ?g rdf:type ontology:Q16521 }
Mycobacterium abscessus
Probable cytochrome P450 MAB_3423 is found in Mycobacterium abscessus
Mycobacterium abscessus
action filter_type
action find
entity Probable cytochrome P450    MAB_3423
relation found in taxon
type taxon
['Probable cytochrome P450    MAB_3423', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?g WHERE { resource:Probable_cytochrome_P450____MAB_3423 property:found_in_taxon ?g . ?g rdf:type ontology:taxon }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q23624867
Q16521
USER
And what about transcriptional regulator VanR    PSPTO_2906?
(Q23624867,P703,c(Q16521))
action filter_type
action find
entity Q23624867
relation P703
type Q16521
['Q23624867', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?g WHERE { ?g rdf:type ontology:Q16521 . resource:Q23624867 property:P703 ?g }
transcriptional regulator VanR    PSPTO_2906
action filter_type
action find
entity transcriptional regulator VanR    PSPTO_2906
relation found in taxon
type taxon
['transcriptional regulator VanR    PSPTO_2906', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?g WHERE { ?g rdf:type ontology:taxon . resource:transcriptional_regulator_VanR____PSPTO_2906 property:found_in_taxon ?g }
[]
taxon
Q21399079
SYSTEM
Pseudomonas syringae pv. tomato str. DC3000
Q21399079
(Q23624867,P703,c(Q16521))
action filter_type
action find
entity Q23624867
relation P703
type Q16521
[ANSWER]
['Q23624867', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?g WHERE { ?g rdf:type ontology:Q16521 . resource:Q23624867 property:P703 ?g }
Pseudomonas syringae pv. tomato str. DC3000
Pseudomonas syringae pv. tomato str. DC3000
action filter_type
action find
entity transcriptional regulator VanR    PSPTO_2906
relation found in taxon
type taxon
['transcriptional regulator VanR    PSPTO_2906', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?g WHERE { ?g rdf:type ontology:taxon . resource:transcriptional_regulator_VanR____PSPTO_2906 property:found_in_taxon ?g }
[]
Logical Reasoning (All)
Logical|Difference|Single_Relation
Q21125151 Q23590577
P680
Q44424
USER
Which chemical bonds represents the molecular function of Probable cytochrome P450    MAB_3423 but not Sal-like protein 3 ?
AND((Q23590577,P680,c(Q44424)), NOT((Q21125151,P680,c(Q44424))))
action filter_type
action difference
action find
entity Q23590577
relation P680
action find
entity Q21125151
relation P680
type Q44424
{'AND': [['Q23590577', 'P680', {'concept': 'Q44424'}], {'NOT': [['Q21125151', 'P680', {'concept': 'Q44424'}]]}]}
SELECT DISTINCT ?n WHERE { ?n rdf:type ontology:Q44424 . MINUS { resource:Q21125151 property:P680 ?n } . resource:Q23590577 property:P680 ?n }
Sal-like protein 3 Probable cytochrome P450    MAB_3423
action filter_type
action difference
action find
entity Probable cytochrome P450    MAB_3423
relation molecular function
action find
entity Sal-like protein 3
relation molecular function
type chemical bond
{'AND': [['Probable cytochrome P450    MAB_3423', 'molecular function', {'concept': 'chemical bond'}], {'NOT': [['Sal-like protein 3', 'molecular function', {'concept': 'chemical bond'}]]}]}
SELECT DISTINCT ?n WHERE { ?n rdf:type ontology:chemical_bond . MINUS { resource:Sal-like_protein_3 property:molecular_function ?n } . resource:Probable_cytochrome_P450____MAB_3423 property:molecular_function ?n }
[]
chemical bond
Q14358439
SYSTEM
iron ion binding
Q14358439
AND((Q23590577,P680,c(Q44424)), NOT((Q21125151,P680,c(Q44424))))
action filter_type
action difference
action find
entity Q23590577
relation P680
action find
entity Q21125151
relation P680
type Q44424
The [ANSWER] represents the molecular function of Probable cytochrome P450 MAB_3423 but not Sal-like protein 3
{'AND': [['Q23590577', 'P680', {'concept': 'Q44424'}], {'NOT': [['Q21125151', 'P680', {'concept': 'Q44424'}]]}]}
SELECT DISTINCT ?n WHERE { ?n rdf:type ontology:Q44424 . MINUS { resource:Q21125151 property:P680 ?n } . resource:Q23590577 property:P680 ?n }
iron ion binding
The iron ion binding represents the molecular function of Probable cytochrome P450 MAB_3423 but not Sal-like protein 3
iron ion binding
action filter_type
action difference
action find
entity Probable cytochrome P450    MAB_3423
relation molecular function
action find
entity Sal-like protein 3
relation molecular function
type chemical bond
{'AND': [['Probable cytochrome P450    MAB_3423', 'molecular function', {'concept': 'chemical bond'}], {'NOT': [['Sal-like protein 3', 'molecular function', {'concept': 'chemical bond'}]]}]}
SELECT DISTINCT ?n WHERE { ?n rdf:type ontology:chemical_bond . MINUS { resource:Sal-like_protein_3 property:molecular_function ?n } . resource:Probable_cytochrome_P450____MAB_3423 property:molecular_function ?n }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q14358439 Q24116775
P680
Q181394
USER
Does dioxygenase hydroxylase component    BN112_0950 have that chemical bond as its molecular function ?
(Q24116775,P680,Q14358439)
action is_in
entity Q14358439
action find
entity Q24116775
relation P680
['Q24116775', 'P680', 'Q14358439']
ASK WHERE { resource:Q24116775 property:P680 resource:Q14358439 }
iron ion binding dioxygenase hydroxylase component    BN112_0950
action is_in
entity iron ion binding
action find
entity dioxygenase hydroxylase component    BN112_0950
relation molecular function
['dioxygenase hydroxylase component    BN112_0950', 'molecular function', 'iron ion binding']
ASK WHERE { resource:dioxygenase_hydroxylase_component____BN112_0950 property:molecular_function resource:iron_ion_binding }
[]
nutrient
SYSTEM
YES
(Q24116775,P680,Q14358439)
action is_in
entity Q14358439
action find
entity Q24116775
relation P680
[ANSWER]
['Q24116775', 'P680', 'Q14358439']
ASK WHERE { resource:Q24116775 property:P680 resource:Q14358439 }
Yes
action is_in
entity iron ion binding
action find
entity dioxygenase hydroxylase component    BN112_0950
relation molecular function
['dioxygenase hydroxylase component    BN112_0950', 'molecular function', 'iron ion binding']
ASK WHERE { resource:dioxygenase_hydroxylase_component____BN112_0950 property:molecular_function resource:iron_ion_binding }
[]