Simple Question (Direct)
Simple Question
Q21496233
P703
Q16521
USER
Where is Vesicle-associated membrane protein 2 found ?
(Q21496233,P703,c(Q16521))
action filter_type
action find
entity Q21496233
relation P703
type Q16521
['Q21496233', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?o WHERE { resource:Q21496233 property:P703 ?o . ?o rdf:type ontology:Q16521 }
Vesicle-associated membrane protein 2
action filter_type
action find
entity Vesicle-associated membrane protein 2
relation found in taxon
type taxon
['Vesicle-associated membrane protein 2', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?o WHERE { resource:Vesicle-associated_membrane_protein_2 property:found_in_taxon ?o . ?o rdf:type ontology:taxon }
[]
taxon
Q83310
SYSTEM
Mus musculus
Q83310
(Q21496233,P703,c(Q16521))
action filter_type
action find
entity Q21496233
relation P703
type Q16521
Vesicle-associated membrane protein 2 is found in [ANSWER]
['Q21496233', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?o WHERE { resource:Q21496233 property:P703 ?o . ?o rdf:type ontology:Q16521 }
Mus musculus
Vesicle-associated membrane protein 2 is found in Mus musculus
Mus musculus
action filter_type
action find
entity Vesicle-associated membrane protein 2
relation found in taxon
type taxon
['Vesicle-associated membrane protein 2', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?o WHERE { resource:Vesicle-associated_membrane_protein_2 property:found_in_taxon ?o . ?o rdf:type ontology:taxon }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21496233
P681
Q15989253
USER
Which parts are components of Vesicle-associated membrane protein 2 ?
(Q21496233,P681,c(Q15989253))
action filter_type
action find
entity Q21496233
relation P681
type Q15989253
['Q21496233', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?v WHERE { resource:Q21496233 property:P681 ?v . ?v rdf:type ontology:Q15989253 }
Vesicle-associated membrane protein 2
action filter_type
action find
entity Vesicle-associated membrane protein 2
relation cell component
type part
['Vesicle-associated membrane protein 2', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?v WHERE { resource:Vesicle-associated_membrane_protein_2 property:cell_component ?v . ?v rdf:type ontology:part }
[]
part
Q187181 Q189073 Q189206
SYSTEM
synapse, cell junction, vesicle
Q187181 Q189073 Q189206 Q14349455
(Q21496233,P681,c(Q15989253))
action filter_type
action find
entity Q21496233
relation P681
type Q15989253
[ANSWERS] are components of Vesicle-associated membrane protein 2
['Q21496233', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?v WHERE { resource:Q21496233 property:P681 ?v . ?v rdf:type ontology:Q15989253 }
synapse cell junction vesicle membrane
Synapse, cell junction and vesicle are components of Vesicle-associated membrane protein 2
synapse cell junction vesicle
action filter_type
action find
entity Vesicle-associated membrane protein 2
relation cell component
type part
['Vesicle-associated membrane protein 2', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?v WHERE { resource:Vesicle-associated_membrane_protein_2 property:cell_component ?v . ?v rdf:type ontology:part }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21496233
P688
Q863908
USER
What is the nucleic acid sequence that is encoded by Vesicle-associated membrane protein 2 ?
(c(Q863908),P688,Q21496233)
action filter_type
action find_reverse
entity Q21496233
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q21496233']
SELECT DISTINCT ?c WHERE { ?c rdf:type ontology:Q863908 . ?c property:P688 resource:Q21496233 }
Vesicle-associated membrane protein 2
action filter_type
action find_reverse
entity Vesicle-associated membrane protein 2
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Vesicle-associated membrane protein 2']
SELECT DISTINCT ?c WHERE { ?c rdf:type ontology:nucleic_acid_sequence . ?c property:encodes resource:Vesicle-associated_membrane_protein_2 }
[]
nucleic acid sequence
Q18255292
SYSTEM
Vamp2
Q18255292
(c(Q863908),P688,Q21496233)
action filter_type
action find_reverse
entity Q21496233
relation P688
type Q863908
The nucleic acid sequence that is encoded by Vesicle-associated membrane protein 2 is called [ANSWER]
[{'concept': 'Q863908'}, 'P688', 'Q21496233']
SELECT DISTINCT ?c WHERE { ?c rdf:type ontology:Q863908 . ?c property:P688 resource:Q21496233 }
Vamp2
The nucleic acid sequence that is encoded by Vesicle-associated membrane protein 2 is called Vamp2
Vamp2
action filter_type
action find_reverse
entity Vesicle-associated membrane protein 2
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Vesicle-associated membrane protein 2']
SELECT DISTINCT ?c WHERE { ?c rdf:type ontology:nucleic_acid_sequence . ?c property:encodes resource:Vesicle-associated_membrane_protein_2 }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18255292
P684
Q863908
USER
Which nucleic acid sequence has that one as its orthologous gene ?
(c(Q863908),P684,Q18255292)
action filter_type
action find
entity Q18255292
relation P684
type Q863908
[{'concept': 'Q863908'}, 'P684', 'Q18255292']
SELECT DISTINCT ?l WHERE { resource:Q18255292 property:P684 ?l . ?l rdf:type ontology:Q863908 }
Vamp2
action filter_type
action find
entity Vamp2
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'Vamp2']
SELECT DISTINCT ?l WHERE { resource:Vamp2 property:ortholog ?l . ?l rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18031801
SYSTEM
VAMP2
Q18031801
(c(Q863908),P684,Q18255292)
action filter_type
action find
entity Q18255292
relation P684
type Q863908
[ANSWER] has that one as its orthologous gene
[{'concept': 'Q863908'}, 'P684', 'Q18255292']
SELECT DISTINCT ?l WHERE { resource:Q18255292 property:P684 ?l . ?l rdf:type ontology:Q863908 }
VAMP2
VAMP2 has that one as its orthologous gene
VAMP2
action filter_type
action find
entity Vamp2
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'Vamp2']
SELECT DISTINCT ?l WHERE { resource:Vamp2 property:ortholog ?l . ?l rdf:type ontology:nucleic_acid_sequence }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q22234211 Q21496233
P682
Q2996394
USER
What are a biological processes that Vesicle-associated membrane protein 2 or universal stress protein    Rv2319c are involved in ?
OR((Q21496233,P682,c(Q2996394)), (Q22234211,P682,c(Q2996394)))
action filter_type
action union
action find
entity Q21496233
relation P682
action find
entity Q22234211
relation P682
type Q2996394
{'OR': [['Q21496233', 'P682', {'concept': 'Q2996394'}], ['Q22234211', 'P682', {'concept': 'Q2996394'}]]}
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:Q2996394 . { { resource:Q21496233 property:P682 ?b } UNION { resource:Q22234211 property:P682 ?b } } }
universal stress protein    Rv2319c Vesicle-associated membrane protein 2
action filter_type
action union
action find
entity Vesicle-associated membrane protein 2
relation biological process
action find
entity universal stress protein    Rv2319c
relation biological process
type biological process
{'OR': [['Vesicle-associated membrane protein 2', 'biological process', {'concept': 'biological process'}], ['universal stress protein    Rv2319c', 'biological process', {'concept': 'biological process'}]]}
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:biological_process . { { resource:Vesicle-associated_membrane_protein_2 property:biological_process ?b } UNION { resource:universal_stress_protein____Rv2319c property:biological_process ?b } } }
[]
biological process
Q21104832 Q14819911
SYSTEM
synaptic vesicle exocytosis, response to stress
Q21104832 Q14819911
OR((Q21496233,P682,c(Q2996394)), (Q22234211,P682,c(Q2996394)))
action filter_type
action union
action find
entity Q21496233
relation P682
action find
entity Q22234211
relation P682
type Q2996394
A biological processes that Vesicle-associated membrane protein 2 or universal stress protein Rv2319c are involved in are [ANSWERS]
{'OR': [['Q21496233', 'P682', {'concept': 'Q2996394'}], ['Q22234211', 'P682', {'concept': 'Q2996394'}]]}
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:Q2996394 . { { resource:Q21496233 property:P682 ?b } UNION { resource:Q22234211 property:P682 ?b } } }
synaptic vesicle exocytosis response to stress
A biological processes that Vesicle-associated membrane protein 2 or universal stress protein Rv2319c are involved in are synaptic vesicle exocytosis and response to stress
synaptic vesicle exocytosis response to stress
action filter_type
action union
action find
entity Vesicle-associated membrane protein 2
relation biological process
action find
entity universal stress protein    Rv2319c
relation biological process
type biological process
{'OR': [['Vesicle-associated membrane protein 2', 'biological process', {'concept': 'biological process'}], ['universal stress protein    Rv2319c', 'biological process', {'concept': 'biological process'}]]}
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:biological_process . { { resource:Vesicle-associated_membrane_protein_2 property:biological_process ?b } UNION { resource:universal_stress_protein____Rv2319c property:biological_process ?b } } }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21104832
P361
Q2996394
USER
Which biological processes are parts of synaptic vesicle exocytosis ?
(c(Q2996394),P361,Q21104832)
action filter_type
action find_reverse
entity Q21104832
relation P361
type Q2996394
[{'concept': 'Q2996394'}, 'P361', 'Q21104832']
SELECT DISTINCT ?m WHERE { ?m property:P361 resource:Q21104832 . ?m rdf:type ontology:Q2996394 }
synaptic vesicle exocytosis
action filter_type
action find_reverse
entity synaptic vesicle exocytosis
relation part of
type biological process
[{'concept': 'biological process'}, 'part of', 'synaptic vesicle exocytosis']
SELECT DISTINCT ?m WHERE { ?m property:part_of resource:synaptic_vesicle_exocytosis . ?m rdf:type ontology:biological_process }
[]
biological process
Q22302766 Q14897640 Q21106668
SYSTEM
calcium-dependent activation of synaptic vesicle fusion, synaptic vesicle docking, synaptic vesicle fusion to presynaptic active zone membrane
Q22302766 Q14897640 Q21106668 Q21116174 Q21111890
(c(Q2996394),P361,Q21104832)
action filter_type
action find_reverse
entity Q21104832
relation P361
type Q2996394
[ANSWERS] are parts of synaptic vesicle exocytosis
[{'concept': 'Q2996394'}, 'P361', 'Q21104832']
SELECT DISTINCT ?m WHERE { ?m property:P361 resource:Q21104832 . ?m rdf:type ontology:Q2996394 }
calcium-dependent activation of synaptic vesicle fusion synaptic vesicle docking synaptic vesicle fusion to presynaptic active zone membrane synaptic vesicle targeting synaptic vesicle priming
Calcium-dependent activation of synaptic vesicle fusion, synaptic vesicle docking and synaptic vesicle fusion to presynaptic active zone membrane are parts of synaptic vesicle exocytosis
calcium-dependent activation of synaptic vesicle fusion synaptic vesicle docking synaptic vesicle fusion to presynaptic active zone membrane
action filter_type
action find_reverse
entity synaptic vesicle exocytosis
relation part of
type biological process
[{'concept': 'biological process'}, 'part of', 'synaptic vesicle exocytosis']
SELECT DISTINCT ?m WHERE { ?m property:part_of resource:synaptic_vesicle_exocytosis . ?m rdf:type ontology:biological_process }
[]
Simple Question (Coreferenced)
Simple Question|Mult. Entity
Q22302766 Q14897640 Q21106668
P361
Q2996394
USER
Which biological processes are those ones a part of ?
(Q22302766,P361,c(Q2996394)) (Q14897640,P361,c(Q2996394)) (Q21106668,P361,c(Q2996394))
action filter_type
action find
entity prev_answer
relation P361
type Q2996394
['Q22302766', 'P361', {'concept': 'Q2996394'}] ['Q14897640', 'P361', {'concept': 'Q2996394'}] ['Q21106668', 'P361', {'concept': 'Q2996394'}]
SELECT DISTINCT ?a WHERE { ?a rdf:type ontology:Q2996394 . VALUES ( ?v ) { ( resource:Q22302766 ) ( resource:Q14897640 ) ( resource:Q21106668 ) } . ?v property:P361 ?a }
calcium-dependent activation of synaptic vesicle fusion synaptic vesicle docking synaptic vesicle fusion to presynaptic active zone membrane
action filter_type
action find
entity prev_answer
relation part of
type biological process
['calcium-dependent activation of synaptic vesicle fusion', 'part of', {'concept': 'biological process'}] ['synaptic vesicle docking', 'part of', {'concept': 'biological process'}] ['synaptic vesicle fusion to presynaptic active zone membrane', 'part of', {'concept': 'biological process'}]
SELECT DISTINCT ?a WHERE { ?a rdf:type ontology:biological_process . VALUES ( ?v ) { ( resource:calcium-dependent_activation_of_synaptic_vesicle_fusion ) ( resource:synaptic_vesicle_docking ) ( resource:synaptic_vesicle_fusion_to_presynaptic_active_zone_membrane ) } . ?v property:part_of ?a }
[]
biological process
Q21104832 Q21104832 Q21104832
SYSTEM
synaptic vesicle exocytosis
Q21104832 Q21104832 Q21104832
(Q22302766,P361,c(Q2996394)) (Q14897640,P361,c(Q2996394)) (Q21106668,P361,c(Q2996394))
action filter_type
action find
entity prev_answer
relation P361
type Q2996394
[ANSWER], [ANSWER] and [ANSWER] are those ones a part of
['Q22302766', 'P361', {'concept': 'Q2996394'}] ['Q14897640', 'P361', {'concept': 'Q2996394'}] ['Q21106668', 'P361', {'concept': 'Q2996394'}]
SELECT DISTINCT ?a WHERE { ?a rdf:type ontology:Q2996394 . VALUES ( ?v ) { ( resource:Q22302766 ) ( resource:Q14897640 ) ( resource:Q21106668 ) } . ?v property:P361 ?a }
synaptic vesicle exocytosis synaptic vesicle exocytosis synaptic vesicle exocytosis
Synaptic vesicle exocytosis, synaptic vesicle exocytosis and synaptic vesicle exocytosis are those ones a part of
synaptic vesicle exocytosis synaptic vesicle exocytosis synaptic vesicle exocytosis
action filter_type
action find
entity prev_answer
relation part of
type biological process
['calcium-dependent activation of synaptic vesicle fusion', 'part of', {'concept': 'biological process'}] ['synaptic vesicle docking', 'part of', {'concept': 'biological process'}] ['synaptic vesicle fusion to presynaptic active zone membrane', 'part of', {'concept': 'biological process'}]
SELECT DISTINCT ?a WHERE { ?a rdf:type ontology:biological_process . VALUES ( ?v ) { ( resource:calcium-dependent_activation_of_synaptic_vesicle_fusion ) ( resource:synaptic_vesicle_docking ) ( resource:synaptic_vesicle_fusion_to_presynaptic_active_zone_membrane ) } . ?v property:part_of ?a }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q18031801
P702
Q181394
USER
What gene does VAMP2 encode ?
(c(Q181394),P702,Q18031801)
action filter_type
action find_reverse
entity Q18031801
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q18031801']
SELECT DISTINCT ?e WHERE { ?e property:P702 resource:Q18031801 . ?e rdf:type ontology:Q181394 }
VAMP2
action filter_type
action find_reverse
entity VAMP2
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'VAMP2']
SELECT DISTINCT ?e WHERE { ?e property:encoded_by resource:VAMP2 . ?e rdf:type ontology:nutrient }
[]
nutrient
Q21156571
SYSTEM
Vesicle-associated membrane protein 2
Q21156571
(c(Q181394),P702,Q18031801)
action filter_type
action find_reverse
entity Q18031801
relation P702
type Q181394
VAMP2 encodes the [ANSWER]
[{'concept': 'Q181394'}, 'P702', 'Q18031801']
SELECT DISTINCT ?e WHERE { ?e property:P702 resource:Q18031801 . ?e rdf:type ontology:Q181394 }
Vesicle-associated membrane protein 2
VAMP2 encodes the Vesicle-associated membrane protein 2
Vesicle-associated membrane protein 2
action filter_type
action find_reverse
entity VAMP2
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'VAMP2']
SELECT DISTINCT ?e WHERE { ?e property:encoded_by resource:VAMP2 . ?e rdf:type ontology:nutrient }
[]
Verification (Boolean) (All)
Verification|3 entities, 2 direct, 2(direct) are query entities, subject is indirect
Q21156571 Q14863664 Q24457453
P682
Q2996394
USER
Is that nutrient involved in neurotransmitter secretion and induction of synaptic vesicle exocytosis by positive regulation of presynaptic cytosolic calcium ion concentration ?
(Q21156571,P682,Q14863664) (Q21156571,P682,Q24457453)
action is_in
entity Q21156571
action intersection
action find_reverse
entity Q14863664
relation P682
action find_reverse
entity Q24457453
relation P682
['Q21156571', 'P682', 'Q14863664'] ['Q21156571', 'P682', 'Q24457453']
ASK WHERE { resource:Q21156571 property:P682 resource:Q14863664 . resource:Q21156571 property:P682 resource:Q24457453 }
Vesicle-associated membrane protein 2 neurotransmitter secretion induction of synaptic vesicle exocytosis by positive regulation of presynaptic cytosolic calcium ion concentration
action is_in
entity Vesicle-associated membrane protein 2
action intersection
action find_reverse
entity neurotransmitter secretion
relation biological process
action find_reverse
entity induction of synaptic vesicle exocytosis by positive regulation of presynaptic cytosolic calcium ion concentration
relation biological process
['Vesicle-associated membrane protein 2', 'biological process', 'neurotransmitter secretion'] ['Vesicle-associated membrane protein 2', 'biological process', 'induction of synaptic vesicle exocytosis by positive regulation of presynaptic cytosolic calcium ion concentration']
ASK WHERE { resource:Vesicle-associated_membrane_protein_2 property:biological_process resource:neurotransmitter_secretion . resource:Vesicle-associated_membrane_protein_2 property:biological_process resource:induction_of_synaptic_vesicle_exocytosis_by_positive_regulation_of_presynaptic_cytosolic_calcium_ion_concentration }
[]
biological process
SYSTEM
YES and NO respectively
(Q21156571,P682,Q14863664) (Q21156571,P682,Q24457453)
action is_in
entity Q21156571
action intersection
action find_reverse
entity Q14863664
relation P682
action find_reverse
entity Q24457453
relation P682
[ANSWER]
['Q21156571', 'P682', 'Q14863664'] ['Q21156571', 'P682', 'Q24457453']
ASK WHERE { resource:Q21156571 property:P682 resource:Q14863664 . resource:Q21156571 property:P682 resource:Q24457453 }
YES and NO respectively
action is_in
entity Vesicle-associated membrane protein 2
action intersection
action find_reverse
entity neurotransmitter secretion
relation biological process
action find_reverse
entity induction of synaptic vesicle exocytosis by positive regulation of presynaptic cytosolic calcium ion concentration
relation biological process
['Vesicle-associated membrane protein 2', 'biological process', 'neurotransmitter secretion'] ['Vesicle-associated membrane protein 2', 'biological process', 'induction of synaptic vesicle exocytosis by positive regulation of presynaptic cytosolic calcium ion concentration']
ASK WHERE { resource:Vesicle-associated_membrane_protein_2 property:biological_process resource:neurotransmitter_secretion . resource:Vesicle-associated_membrane_protein_2 property:biological_process resource:induction_of_synaptic_vesicle_exocytosis_by_positive_regulation_of_presynaptic_cytosolic_calcium_ion_concentration }
[]