Simple Question (Direct)
Simple Question
Q22325484
P681
Q15989253
USER
Which is the cell component of 30S ribosomal protein S17    HMPREF0421_21274 ?
(Q22325484,P681,c(Q15989253))
action filter_type
action find
entity Q22325484
relation P681
type Q15989253
['Q22325484', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:Q15989253 . resource:Q22325484 property:P681 ?b }
30S ribosomal protein S17    HMPREF0421_21274
action filter_type
action find
entity 30S ribosomal protein S17    HMPREF0421_21274
relation cell component
type part
['30S ribosomal protein S17    HMPREF0421_21274', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:part . resource:30S_ribosomal_protein_S17____HMPREF0421_21274 property:cell_component ?b }
[]
part
Q42244
SYSTEM
ribosome
Q42244
(Q22325484,P681,c(Q15989253))
action filter_type
action find
entity Q22325484
relation P681
type Q15989253
The [ANSWER] is the cell component of 30S ribosomal protein S17 HMPREF0421_21274
['Q22325484', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:Q15989253 . resource:Q22325484 property:P681 ?b }
ribosome
The ribosome is the cell component of 30S ribosomal protein S17 HMPREF0421_21274
ribosome
action filter_type
action find
entity 30S ribosomal protein S17    HMPREF0421_21274
relation cell component
type part
['30S ribosomal protein S17    HMPREF0421_21274', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:part . resource:30S_ribosomal_protein_S17____HMPREF0421_21274 property:cell_component ?b }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q22325484
P703
Q631147
USER
Where is 30S ribosomal protein S17    HMPREF0421_21274 found ?
(Q22325484,P703,c(Q631147))
action filter_type
action find
entity Q22325484
relation P703
type Q631147
['Q22325484', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?y WHERE { resource:Q22325484 property:P703 ?y . ?y rdf:type ontology:Q631147 }
30S ribosomal protein S17    HMPREF0421_21274
action filter_type
action find
entity 30S ribosomal protein S17    HMPREF0421_21274
relation found in taxon
type infraspecific name
['30S ribosomal protein S17    HMPREF0421_21274', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?y WHERE { resource:30S_ribosomal_protein_S17____HMPREF0421_21274 property:found_in_taxon ?y . ?y rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102992
SYSTEM
Gardnerella vaginalis ATCC 14019
Q21102992
(Q22325484,P703,c(Q631147))
action filter_type
action find
entity Q22325484
relation P703
type Q631147
30S ribosomal protein S17 HMPREF0421_21274 is found in [ANSWER]
['Q22325484', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?y WHERE { resource:Q22325484 property:P703 ?y . ?y rdf:type ontology:Q631147 }
Gardnerella vaginalis ATCC 14019
30S ribosomal protein S17 HMPREF0421_21274 is found in Gardnerella vaginalis ATCC 14019
Gardnerella vaginalis ATCC 14019
action filter_type
action find
entity 30S ribosomal protein S17    HMPREF0421_21274
relation found in taxon
type infraspecific name
['30S ribosomal protein S17    HMPREF0421_21274', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?y WHERE { resource:30S_ribosomal_protein_S17____HMPREF0421_21274 property:found_in_taxon ?y . ?y rdf:type ontology:infraspecific_name }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q23292669
Q631147
USER
And also tell me about xylose isomerase    SCO1169?
(Q23292669,P703,c(Q631147))
action filter_type
action find
entity Q23292669
relation P703
type Q631147
['Q23292669', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?j WHERE { resource:Q23292669 property:P703 ?j . ?j rdf:type ontology:Q631147 }
xylose isomerase    SCO1169
action filter_type
action find
entity xylose isomerase    SCO1169
relation found in taxon
type infraspecific name
['xylose isomerase    SCO1169', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?j WHERE { resource:xylose_isomerase____SCO1169 property:found_in_taxon ?j . ?j rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102988
SYSTEM
Streptomyces coelicolor A3(2)
Q21102988
(Q23292669,P703,c(Q631147))
action filter_type
action find
entity Q23292669
relation P703
type Q631147
[ANSWER]
['Q23292669', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?j WHERE { resource:Q23292669 property:P703 ?j . ?j rdf:type ontology:Q631147 }
Streptomyces coelicolor A3(2)
Streptomyces coelicolor A3(2)
action filter_type
action find
entity xylose isomerase    SCO1169
relation found in taxon
type infraspecific name
['xylose isomerase    SCO1169', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?j WHERE { resource:xylose_isomerase____SCO1169 property:found_in_taxon ?j . ?j rdf:type ontology:infraspecific_name }
[]
Comparative Reasoning (All)
Comparative|More/Less|Single entity type
Q21102478
P361
Q5058355 Q15989253
USER
Which cellular components are around the same number of parts a portion of as other organism cell ?
(c(Q15989253),P361,c(Q5058355))
action approx
action find_reverse_tuple_counts
relation P361
type Q5058355
type Q15989253
action count
action filter_type
action find
entity Q21102478
relation P361
type Q5058355
[{'concept': 'Q15989253'}, 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ?s WHERE { { SELECT DISTINCT ( COUNT ( ?f ) AS ?y ) WHERE { resource:Q21102478 property:P361 ?f . ?f rdf:type ontology:Q5058355 } } . FILTER ( ?d = ?y ) . { SELECT DISTINCT ?s ( COUNT ( ?i ) AS ?d ) WHERE { ?i property:P361 ?s . ?s rdf:type ontology:Q5058355 . ?i rdf:type ontology:Q15989253 } GROUP BY ?s } }
other organism cell
action approx
action find_reverse_tuple_counts
relation part of
type cellular component
type part
action count
action filter_type
action find
entity other organism cell
relation part of
type cellular component
[{'concept': 'part'}, 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ?s WHERE { { SELECT DISTINCT ( COUNT ( ?f ) AS ?y ) WHERE { resource:other_organism_cell property:part_of ?f . ?f rdf:type ontology:cellular_component } } . FILTER ( ?d = ?y ) . { SELECT DISTINCT ?s ( COUNT ( ?i ) AS ?d ) WHERE { ?i property:part_of ?s . ?s rdf:type ontology:cellular_component . ?i rdf:type ontology:part } GROUP BY ?s } }
[]
cellular component part
Q29548 Q14912978 Q22329159
SYSTEM
plasma membrane, mitochondrial nucleoid, ventral disc microtubule array
Q22329450 Q21106124 Q15320191 Q14912978 Q14864171 Q14876131 Q14878067 Q1604780 Q22327994 Q22327622 Q14860843 Q22327479 Q22327686 Q22327683 Q22330482 Q671136 Q22326188 Q22330431 Q189094 Q24576572 Q3824358 Q22329021 Q14864391 Q14864390 Q22328085 Q21095183 Q14329032 Q14905221 Q21199358 Q22327411 Q22327418 Q22329159 Q21109092 Q22329397 Q14864382 Q14353100 Q22327884 Q22329851 Q14863372 Q21423046 Q47263 Q22327652 Q22329848 Q180436 Q22329162 Q22329846 Q22329160 Q24570682 Q22330051 Q22327498 Q14911512 Q14819352 Q22327494 Q22327889 Q14762605 Q14864266 Q21750262 Q21198990 Q776995 Q22329401 Q24570673 Q14349538 Q22328884 Q22329076 Q22330231 Q5419646 Q21126899 Q22325459 Q2914458 Q22327714 Q22327805 Q21107481 Q22327505 Q21102478 Q22327502 Q22327500 Q138639 Q22329104 Q21095308 Q14864857 Q1065756 Q79927 Q180951 Q22327475 Q14864520 Q29548 Q22328105 Q14860546 Q14860540 Q14864866 Q6414172 Q193825
(c(Q15989253),P361,c(Q5058355))
action approx
action find_reverse_tuple_counts
relation P361
type Q5058355
type Q15989253
action count
action filter_type
action find
entity Q21102478
relation P361
type Q5058355
[ANSWERS] are around the same number of parts a portion of as other organism cell
[{'concept': 'Q15989253'}, 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ?s WHERE { { SELECT DISTINCT ( COUNT ( ?f ) AS ?y ) WHERE { resource:Q21102478 property:P361 ?f . ?f rdf:type ontology:Q5058355 } } . FILTER ( ?d = ?y ) . { SELECT DISTINCT ?s ( COUNT ( ?i ) AS ?d ) WHERE { ?i property:P361 ?s . ?s rdf:type ontology:Q5058355 . ?i rdf:type ontology:Q15989253 } GROUP BY ?s } }
lateral part of cell viral capsid synaptic cleft mitochondrial nucleoid cell periphery compact myelin organelle membrane hemidesmosome rhoptry side of membrane nuclear outer membrane presynapse prospore membrane eisosome ventral disc supernumerary microtubule array synaptic vesicle aster unencapsulated part of cell cell surface presynaptic endosome membrane intracellular apical complex intracellular organelle synaptic vesicle membrane external encapsulating structure dendritic spine head endoplasmic reticulum membrane symbiont-containing vacuole membrane bacterial nucleoid extracellular space of host host ventral disc microtubule array nuclear outer membrane-endoplasmic reticulum membrane network cluster of actin-based cell projections presynaptic active zone cell projection cellular bud virus tail myelin sheath membrane-bounded organelle chloroplast whole membrane icosahedral viral capsid, collar cilium ventral disc icosahedral viral capsid, neck ventral disc overlap zone spine apparatus membrane dinoflagellate hypocone postsynaptic endocytic zone stereocilium respiratory chain postsynaptic endosome cell trailing edge midbody cell-substrate junction cell division site periplasmic space neuromuscular junction pellicle postsynaptic endosome membrane apical part of cell organellar ribosome plastid nucleoid dinoflagellate epicone excitatory synapse cell tip sperm individualization complex extracellular space coated membrane photosynthetic membrane site of polarized growth presynaptic endosome other organism cell presynaptic active zone cytoplasmic component presynaptic endocytic zone peroxisome germ tube retromer complex cell leading edge melanosome endoplasmic reticulum chromatin postsynapse extrinsic component of membrane plasma membrane cell septum basal part of cell clathrin-coated pit cell body kinocilium extracellular matrix
Plasma membrane, mitochondrial nucleoid and ventral disc microtubule array are around the same number of parts a portion of as other organism cell
plasma membrane mitochondrial nucleoid ventral disc microtubule array
action approx
action find_reverse_tuple_counts
relation part of
type cellular component
type part
action count
action filter_type
action find
entity other organism cell
relation part of
type cellular component
[{'concept': 'part'}, 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ?s WHERE { { SELECT DISTINCT ( COUNT ( ?f ) AS ?y ) WHERE { resource:other_organism_cell property:part_of ?f . ?f rdf:type ontology:cellular_component } } . FILTER ( ?d = ?y ) . { SELECT DISTINCT ?s ( COUNT ( ?i ) AS ?d ) WHERE { ?i property:part_of ?s . ?s rdf:type ontology:cellular_component . ?i rdf:type ontology:part } GROUP BY ?s } }
[]
Comparative Reasoning (All)
Comparative|More/Less|Single entity type|Incomplete
Q138639
P361
Q5058355 Q15989253
USER
And how about peroxisome?
(c(Q15989253),P361,c(Q5058355))
action approx
action find_reverse_tuple_counts
relation P361
type Q5058355
type Q15989253
action count
action filter_type
action find
entity Q138639
relation P361
type Q5058355
[{'concept': 'Q15989253'}, 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ?q WHERE { { SELECT DISTINCT ?q ( COUNT ( ?b ) AS ?h ) WHERE { ?b property:P361 ?q . ?q rdf:type ontology:Q5058355 . ?b rdf:type ontology:Q15989253 } GROUP BY ?q } . { SELECT DISTINCT ( COUNT ( ?t ) AS ?g ) WHERE { resource:Q138639 property:P361 ?t . ?t rdf:type ontology:Q5058355 } } . FILTER ( ?h = ?g ) }
peroxisome
action approx
action find_reverse_tuple_counts
relation part of
type cellular component
type part
action count
action filter_type
action find
entity peroxisome
relation part of
type cellular component
[{'concept': 'part'}, 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ?q WHERE { { SELECT DISTINCT ?q ( COUNT ( ?b ) AS ?h ) WHERE { ?b property:part_of ?q . ?q rdf:type ontology:cellular_component . ?b rdf:type ontology:part } GROUP BY ?q } . { SELECT DISTINCT ( COUNT ( ?t ) AS ?g ) WHERE { resource:peroxisome property:part_of ?t . ?t rdf:type ontology:cellular_component } } . FILTER ( ?h = ?g ) }
[]
cellular component part
Q29548 Q14912978 Q22329159
SYSTEM
plasma membrane, mitochondrial nucleoid, ventral disc microtubule array
Q22329450 Q21106124 Q15320191 Q14912978 Q14864171 Q14876131 Q14878067 Q1604780 Q22327994 Q22327622 Q14860843 Q22327479 Q22327686 Q22327683 Q22330482 Q671136 Q22326188 Q22330431 Q189094 Q24576572 Q3824358 Q22329021 Q14864391 Q14864390 Q22328085 Q21095183 Q14329032 Q14905221 Q21199358 Q22327411 Q22327418 Q22329159 Q21109092 Q22329397 Q14864382 Q14353100 Q22327884 Q22329851 Q14863372 Q21423046 Q47263 Q22327652 Q22329848 Q180436 Q22329162 Q22329846 Q22329160 Q24570682 Q22330051 Q22327498 Q14911512 Q14819352 Q22327494 Q22327889 Q14762605 Q14864266 Q21750262 Q21198990 Q776995 Q22329401 Q24570673 Q14349538 Q22328884 Q22329076 Q22330231 Q5419646 Q21126899 Q22325459 Q2914458 Q22327714 Q22327805 Q21107481 Q22327505 Q21102478 Q22327502 Q22327500 Q138639 Q22329104 Q21095308 Q14864857 Q1065756 Q79927 Q180951 Q22327475 Q14864520 Q29548 Q22328105 Q14860546 Q14860540 Q14864866 Q6414172 Q193825
(c(Q15989253),P361,c(Q5058355))
action approx
action find_reverse_tuple_counts
relation P361
type Q5058355
type Q15989253
action count
action filter_type
action find
entity Q138639
relation P361
type Q5058355
[ANSWERS]
[{'concept': 'Q15989253'}, 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ?q WHERE { { SELECT DISTINCT ?q ( COUNT ( ?b ) AS ?h ) WHERE { ?b property:P361 ?q . ?q rdf:type ontology:Q5058355 . ?b rdf:type ontology:Q15989253 } GROUP BY ?q } . { SELECT DISTINCT ( COUNT ( ?t ) AS ?g ) WHERE { resource:Q138639 property:P361 ?t . ?t rdf:type ontology:Q5058355 } } . FILTER ( ?h = ?g ) }
lateral part of cell viral capsid synaptic cleft mitochondrial nucleoid cell periphery compact myelin organelle membrane hemidesmosome rhoptry side of membrane nuclear outer membrane presynapse prospore membrane eisosome ventral disc supernumerary microtubule array synaptic vesicle aster unencapsulated part of cell cell surface presynaptic endosome membrane intracellular apical complex intracellular organelle synaptic vesicle membrane external encapsulating structure dendritic spine head endoplasmic reticulum membrane symbiont-containing vacuole membrane bacterial nucleoid extracellular space of host host ventral disc microtubule array nuclear outer membrane-endoplasmic reticulum membrane network cluster of actin-based cell projections presynaptic active zone cell projection cellular bud virus tail myelin sheath membrane-bounded organelle chloroplast whole membrane icosahedral viral capsid, collar cilium ventral disc icosahedral viral capsid, neck ventral disc overlap zone spine apparatus membrane dinoflagellate hypocone postsynaptic endocytic zone stereocilium respiratory chain postsynaptic endosome cell trailing edge midbody cell-substrate junction cell division site periplasmic space neuromuscular junction pellicle postsynaptic endosome membrane apical part of cell organellar ribosome plastid nucleoid dinoflagellate epicone excitatory synapse cell tip sperm individualization complex extracellular space coated membrane photosynthetic membrane site of polarized growth presynaptic endosome other organism cell presynaptic active zone cytoplasmic component presynaptic endocytic zone peroxisome germ tube retromer complex cell leading edge melanosome endoplasmic reticulum chromatin postsynapse extrinsic component of membrane plasma membrane cell septum basal part of cell clathrin-coated pit cell body kinocilium extracellular matrix
plasma membrane mitochondrial nucleoid ventral disc microtubule array
action approx
action find_reverse_tuple_counts
relation part of
type cellular component
type part
action count
action filter_type
action find
entity peroxisome
relation part of
type cellular component
[{'concept': 'part'}, 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ?q WHERE { { SELECT DISTINCT ?q ( COUNT ( ?b ) AS ?h ) WHERE { ?b property:part_of ?q . ?q rdf:type ontology:cellular_component . ?b rdf:type ontology:part } GROUP BY ?q } . { SELECT DISTINCT ( COUNT ( ?t ) AS ?g ) WHERE { resource:peroxisome property:part_of ?t . ?t rdf:type ontology:cellular_component } } . FILTER ( ?h = ?g ) }
[]