Simple Question (Direct)
Simple Question
Q24096409
P703
Q631147
USER
What is the taxon to which flagellar biosynthesis protein FliR    Psyr_3442 belongs to ?
(Q24096409,P703,c(Q631147))
action filter_type
action find
entity Q24096409
relation P703
type Q631147
['Q24096409', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?y WHERE { resource:Q24096409 property:P703 ?y . ?y rdf:type ontology:Q631147 }
flagellar biosynthesis protein FliR    Psyr_3442
action filter_type
action find
entity flagellar biosynthesis protein FliR    Psyr_3442
relation found in taxon
type infraspecific name
['flagellar biosynthesis protein FliR    Psyr_3442', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?y WHERE { resource:flagellar_biosynthesis_protein_FliR____Psyr_3442 property:found_in_taxon ?y . ?y rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21079490
SYSTEM
Pseudomonas syringae pv. syringae B728a
Q21079490
(Q24096409,P703,c(Q631147))
action filter_type
action find
entity Q24096409
relation P703
type Q631147
[ANSWER]
['Q24096409', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?y WHERE { resource:Q24096409 property:P703 ?y . ?y rdf:type ontology:Q631147 }
Pseudomonas syringae pv. syringae B728a
Pseudomonas syringae pv. syringae B728a
Pseudomonas syringae pv. syringae B728a
action filter_type
action find
entity flagellar biosynthesis protein FliR    Psyr_3442
relation found in taxon
type infraspecific name
['flagellar biosynthesis protein FliR    Psyr_3442', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?y WHERE { resource:flagellar_biosynthesis_protein_FliR____Psyr_3442 property:found_in_taxon ?y . ?y rdf:type ontology:infraspecific_name }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q24096409
P688
Q863908
USER
Which nucleic acid sequence encodes flagellar biosynthesis protein FliR    Psyr_3442 ?
(c(Q863908),P688,Q24096409)
action filter_type
action find_reverse
entity Q24096409
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q24096409']
SELECT DISTINCT ?b WHERE { ?b property:P688 resource:Q24096409 . ?b rdf:type ontology:Q863908 }
flagellar biosynthesis protein FliR    Psyr_3442
action filter_type
action find_reverse
entity flagellar biosynthesis protein FliR    Psyr_3442
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'flagellar biosynthesis protein FliR    Psyr_3442']
SELECT DISTINCT ?b WHERE { ?b property:encodes resource:flagellar_biosynthesis_protein_FliR____Psyr_3442 . ?b rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23155005
SYSTEM
flagellar biosynthesis protein FliR    Psyr_3442
Q23155005
(c(Q863908),P688,Q24096409)
action filter_type
action find_reverse
entity Q24096409
relation P688
type Q863908
Flagellar biosynthesis protein FliR Psyr 3442 encodes flagellar biosynthesis protein FliR Psyr_3442
[{'concept': 'Q863908'}, 'P688', 'Q24096409']
SELECT DISTINCT ?b WHERE { ?b property:P688 resource:Q24096409 . ?b rdf:type ontology:Q863908 }
flagellar biosynthesis protein FliR    Psyr_3442
Flagellar biosynthesis protein FliR Psyr 3442 encodes flagellar biosynthesis protein FliR Psyr_3442
flagellar biosynthesis protein FliR    Psyr_3442
action filter_type
action find_reverse
entity flagellar biosynthesis protein FliR    Psyr_3442
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'flagellar biosynthesis protein FliR    Psyr_3442']
SELECT DISTINCT ?b WHERE { ?b property:encodes resource:flagellar_biosynthesis_protein_FliR____Psyr_3442 . ?b rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23155005
P702
Q181394
USER
Which nutrient is encoded by that nucleic acid sequence ?
(c(Q181394),P702,Q23155005)
action filter_type
action find_reverse
entity Q23155005
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q23155005']
SELECT DISTINCT ?q WHERE { ?q property:P702 resource:Q23155005 . ?q rdf:type ontology:Q181394 }
flagellar biosynthesis protein FliR    Psyr_3442
action filter_type
action find_reverse
entity flagellar biosynthesis protein FliR    Psyr_3442
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'flagellar biosynthesis protein FliR    Psyr_3442']
SELECT DISTINCT ?q WHERE { ?q property:encoded_by resource:flagellar_biosynthesis_protein_FliR____Psyr_3442 . ?q rdf:type ontology:nutrient }
[]
nutrient
Q24096409
SYSTEM
flagellar biosynthesis protein FliR    Psyr_3442
Q24096409
(c(Q181394),P702,Q23155005)
action filter_type
action find_reverse
entity Q23155005
relation P702
type Q181394
Flagellar biosynthesis protein FliR Psyr 3442 is encoded by that nucleic acid sequence
[{'concept': 'Q181394'}, 'P702', 'Q23155005']
SELECT DISTINCT ?q WHERE { ?q property:P702 resource:Q23155005 . ?q rdf:type ontology:Q181394 }
flagellar biosynthesis protein FliR    Psyr_3442
Flagellar biosynthesis protein FliR Psyr 3442 is encoded by that nucleic acid sequence
flagellar biosynthesis protein FliR    Psyr_3442
action filter_type
action find_reverse
entity flagellar biosynthesis protein FliR    Psyr_3442
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'flagellar biosynthesis protein FliR    Psyr_3442']
SELECT DISTINCT ?q WHERE { ?q property:encoded_by resource:flagellar_biosynthesis_protein_FliR____Psyr_3442 . ?q rdf:type ontology:nutrient }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q181394 Q181394 Q79529
USER
How many nutrients do approximately 26 nutrients and chemical substances interact with ?
(c(Q181394)|c(Q79529),P129,c(Q181394))
action count
action approx
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
value 26
[[{'concept': 'Q181394'}, {'concept': 'Q79529'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?u ) AS ?t ) WHERE { { SELECT DISTINCT ?u ( COUNT ( ?m ) AS ?q ) WHERE { { ?m property:P129 ?u . ?u rdf:type ontology:Q181394 . ?m rdf:type ontology:Q79529 } UNION { ?m property:P129 ?u . ?u rdf:type ontology:Q181394 . ?m rdf:type ontology:Q181394 } } GROUP BY ?u } . FILTER ( ?q = 26 ) }
action count
action approx
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
value 26
[[{'concept': 'nutrient'}, {'concept': 'chemical substance'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?u ) AS ?t ) WHERE { { SELECT DISTINCT ?u ( COUNT ( ?m ) AS ?q ) WHERE { { ?m property:physically_interacts_with ?u . ?u rdf:type ontology:nutrient . ?m rdf:type ontology:chemical_substance } UNION { ?m property:physically_interacts_with ?u . ?u rdf:type ontology:nutrient . ?m rdf:type ontology:nutrient } } GROUP BY ?u } . FILTER ( ?q = 26 ) }
[]
nutrient nutrient chemical substance
SYSTEM
2
Q288797 Q21109363
(c(Q181394)|c(Q79529),P129,c(Q181394))
action count
action approx
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
value 26
[ANSWER]
[[{'concept': 'Q181394'}, {'concept': 'Q79529'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?u ) AS ?t ) WHERE { { SELECT DISTINCT ?u ( COUNT ( ?m ) AS ?q ) WHERE { { ?m property:P129 ?u . ?u rdf:type ontology:Q181394 . ?m rdf:type ontology:Q79529 } UNION { ?m property:P129 ?u . ?u rdf:type ontology:Q181394 . ?m rdf:type ontology:Q181394 } } GROUP BY ?u } . FILTER ( ?q = 26 ) }
5-hydroxytryptamine receptor 1B 5-hydroxytryptamine receptor 6
2
action count
action approx
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
value 26
[[{'concept': 'nutrient'}, {'concept': 'chemical substance'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?u ) AS ?t ) WHERE { { SELECT DISTINCT ?u ( COUNT ( ?m ) AS ?q ) WHERE { { ?m property:physically_interacts_with ?u . ?u rdf:type ontology:nutrient . ?m rdf:type ontology:chemical_substance } UNION { ?m property:physically_interacts_with ?u . ?u rdf:type ontology:nutrient . ?m rdf:type ontology:nutrient } } GROUP BY ?u } . FILTER ( ?q = 26 ) }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q408557
Q181394
USER
And also tell me about telaprevir?
(Q408557,P129,c(Q181394))
action filter_type
action find
entity Q408557
relation P129
type Q181394
['Q408557', 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?j WHERE { resource:Q408557 property:P129 ?j . ?j rdf:type ontology:Q181394 }
telaprevir
action filter_type
action find
entity telaprevir
relation physically interacts with
type nutrient
['telaprevir', 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?j WHERE { resource:telaprevir property:physically_interacts_with ?j . ?j rdf:type ontology:nutrient }
[]
nutrient
Q21117208 Q423561
SYSTEM
Chymotrypsin-like elastase family member 1, Lysosomal protective protein
Q21117208 Q423561
(Q408557,P129,c(Q181394))
action filter_type
action find
entity Q408557
relation P129
type Q181394
[ANSWERS]
['Q408557', 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?j WHERE { resource:Q408557 property:P129 ?j . ?j rdf:type ontology:Q181394 }
Chymotrypsin-like elastase family member 1 Lysosomal protective protein
Chymotrypsin-like elastase family member 1 Lysosomal protective protein
action filter_type
action find
entity telaprevir
relation physically interacts with
type nutrient
['telaprevir', 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?j WHERE { resource:telaprevir property:physically_interacts_with ?j . ?j rdf:type ontology:nutrient }
[]
Clarification
Simple Question|Single Entity|Indirect
Q423561
P681
Q45948
USER
Which is the cell component of that nutrient ?
(Q423561,P681,c(Q45948))
action filter_type
action find
entity Q423561
relation P681
type Q45948
['Q423561', 'P681', {'concept': 'Q45948'}]
SELECT DISTINCT ?r WHERE { resource:Q423561 property:P681 ?r . ?r rdf:type ontology:Q45948 }
Lysosomal protective protein
action filter_type
action find
entity Lysosomal protective protein
relation cell component
type organelle
['Lysosomal protective protein', 'cell component', {'concept': 'organelle'}]
SELECT DISTINCT ?r WHERE { resource:Lysosomal_protective_protein property:cell_component ?r . ?r rdf:type ontology:organelle }
[]
organelle
Clarification for simple ques.
Q423561
SYSTEM
Did you mean Lysosomal protective protein ?
Q21117208 Q423561
(Q21117208,P681,c(Q45948)) (Q423561,P681,c(Q45948))
[ANSWER]
['Q21117208', 'P681', {'concept': 'Q45948'}] ['Q423561', 'P681', {'concept': 'Q45948'}]
SELECT DISTINCT ?r WHERE { resource:Q423561 property:P681 ?r . ?r rdf:type ontology:Q45948 }
Chymotrypsin-like elastase family member 1 Lysosomal protective protein
Did you mean Lysosomal protective protein ?
Lysosomal protective protein
['Chymotrypsin-like elastase family member 1', 'cell component', {'concept': 'organelle'}] ['Lysosomal protective protein', 'cell component', {'concept': 'organelle'}]
SELECT DISTINCT ?r WHERE { resource:Lysosomal_protective_protein property:cell_component ?r . ?r rdf:type ontology:organelle }
[]
Simple Question (Coreferenced)
USER
Yes
(Q423561,P681,c(Q45948))
['Q423561', 'P681', {'concept': 'Q45948'}]
['Lysosomal protective protein', 'cell component', {'concept': 'organelle'}]
[]
Q14349519
SYSTEM
intracellular membrane-bounded organelle
Q14349519
(Q423561,P681,c(Q45948))
action filter_type
action find
entity Q423561
relation P681
type Q45948
[ANSWER] is the cell component of that nutrient
['Q423561', 'P681', {'concept': 'Q45948'}]
SELECT DISTINCT ?r WHERE { resource:Q423561 property:P681 ?r . ?r rdf:type ontology:Q45948 }
intracellular membrane-bounded organelle
Intracellular membrane-bounded organelle is the cell component of that nutrient
intracellular membrane-bounded organelle
action filter_type
action find
entity Lysosomal protective protein
relation cell component
type organelle
['Lysosomal protective protein', 'cell component', {'concept': 'organelle'}]
SELECT DISTINCT ?r WHERE { resource:Lysosomal_protective_protein property:cell_component ?r . ?r rdf:type ontology:organelle }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21117208
P680
Q44424
USER
Which chemical bond represents molecular function of Chymotrypsin-like elastase family member 1 ?
(Q21117208,P680,c(Q44424))
action filter_type
action find
entity Q21117208
relation P680
type Q44424
['Q21117208', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?f WHERE { resource:Q21117208 property:P680 ?f . ?f rdf:type ontology:Q44424 }
Chymotrypsin-like elastase family member 1
action filter_type
action find
entity Chymotrypsin-like elastase family member 1
relation molecular function
type chemical bond
['Chymotrypsin-like elastase family member 1', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?f WHERE { resource:Chymotrypsin-like_elastase_family_member_1 property:molecular_function ?f . ?f rdf:type ontology:chemical_bond }
[]
chemical bond
Q13667380
SYSTEM
metal ion binding
Q13667380
(Q21117208,P680,c(Q44424))
action filter_type
action find
entity Q21117208
relation P680
type Q44424
The [ANSWER] represents molecular function of Chymotrypsin-like elastase family member 1
['Q21117208', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?f WHERE { resource:Q21117208 property:P680 ?f . ?f rdf:type ontology:Q44424 }
metal ion binding
The metal ion binding represents molecular function of Chymotrypsin-like elastase family member 1
metal ion binding
action filter_type
action find
entity Chymotrypsin-like elastase family member 1
relation molecular function
type chemical bond
['Chymotrypsin-like elastase family member 1', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?f WHERE { resource:Chymotrypsin-like_elastase_family_member_1 property:molecular_function ?f . ?f rdf:type ontology:chemical_bond }
[]