Simple Question (Direct)
Simple Question
Q27550441
P702
Q863908
USER
Which gene encodes Pex34p YCL056C ?
(Q27550441,P702,c(Q863908))
action filter_type
action find
entity Q27550441
relation P702
type Q863908
['Q27550441', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?a WHERE { ?a rdf:type ontology:Q863908 . resource:Q27550441 property:P702 ?a }
Pex34p YCL056C
action filter_type
action find
entity Pex34p YCL056C
relation encoded by
type nucleic acid sequence
['Pex34p YCL056C', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?a WHERE { ?a rdf:type ontology:nucleic_acid_sequence . resource:Pex34p_YCL056C property:encoded_by ?a }
[]
nucleic acid sequence
Q27543363
SYSTEM
Pex34p YCL056C
Q27543363
(Q27550441,P702,c(Q863908))
action filter_type
action find
entity Q27550441
relation P702
type Q863908
[ANSWER] encodes [ANSWER]
['Q27550441', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?a WHERE { ?a rdf:type ontology:Q863908 . resource:Q27550441 property:P702 ?a }
Pex34p YCL056C
Pex34p YCL056C encodes Pex34p YCL056C
Pex34p YCL056C
action filter_type
action find
entity Pex34p YCL056C
relation encoded by
type nucleic acid sequence
['Pex34p YCL056C', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?a WHERE { ?a rdf:type ontology:nucleic_acid_sequence . resource:Pex34p_YCL056C property:encoded_by ?a }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q27550441
P703
Q631147
USER
What is the taxon to which Pex34p YCL056C belongs to ?
(Q27550441,P703,c(Q631147))
action filter_type
action find
entity Q27550441
relation P703
type Q631147
['Q27550441', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?t WHERE { ?t rdf:type ontology:Q631147 . resource:Q27550441 property:P703 ?t }
Pex34p YCL056C
action filter_type
action find
entity Pex34p YCL056C
relation found in taxon
type infraspecific name
['Pex34p YCL056C', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?t WHERE { ?t rdf:type ontology:infraspecific_name . resource:Pex34p_YCL056C property:found_in_taxon ?t }
[]
infraspecific name
Q27510868
SYSTEM
Saccharomyces cerevisiae S288c
Q27510868
(Q27550441,P703,c(Q631147))
action filter_type
action find
entity Q27550441
relation P703
type Q631147
[ANSWER]
['Q27550441', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?t WHERE { ?t rdf:type ontology:Q631147 . resource:Q27550441 property:P703 ?t }
Saccharomyces cerevisiae S288c
Saccharomyces cerevisiae S288c
Saccharomyces cerevisiae S288c
action filter_type
action find
entity Pex34p YCL056C
relation found in taxon
type infraspecific name
['Pex34p YCL056C', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?t WHERE { ?t rdf:type ontology:infraspecific_name . resource:Pex34p_YCL056C property:found_in_taxon ?t }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q23130835
Q631147
USER
And what about ATP-dependent DNA helicase    KPHS_01630?
(Q23130835,P703,c(Q631147))
action filter_type
action find
entity Q23130835
relation P703
type Q631147
['Q23130835', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?j WHERE { resource:Q23130835 property:P703 ?j . ?j rdf:type ontology:Q631147 }
ATP-dependent DNA helicase    KPHS_01630
action filter_type
action find
entity ATP-dependent DNA helicase    KPHS_01630
relation found in taxon
type infraspecific name
['ATP-dependent DNA helicase    KPHS_01630', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?j WHERE { resource:ATP-dependent_DNA_helicase____KPHS_01630 property:found_in_taxon ?j . ?j rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102939
SYSTEM
Klebsiella pneumoniae subsp. pneumoniae HS11286
Q21102939
(Q23130835,P703,c(Q631147))
action filter_type
action find
entity Q23130835
relation P703
type Q631147
[ANSWER]
['Q23130835', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?j WHERE { resource:Q23130835 property:P703 ?j . ?j rdf:type ontology:Q631147 }
Klebsiella pneumoniae subsp. pneumoniae HS11286
Klebsiella pneumoniae subsp. pneumoniae HS11286
action filter_type
action find
entity ATP-dependent DNA helicase    KPHS_01630
relation found in taxon
type infraspecific name
['ATP-dependent DNA helicase    KPHS_01630', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?j WHERE { resource:ATP-dependent_DNA_helicase____KPHS_01630 property:found_in_taxon ?j . ?j rdf:type ontology:infraspecific_name }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q21102939 Q24272699
P703
Q181394
USER
Is auxiliary transport protein, membrane fusion protein (MFP) family    KPHS_27260 found in the taxon that infraspecific name ?
(Q24272699,P703,Q21102939)
action is_in
entity Q21102939
action find
entity Q24272699
relation P703
['Q24272699', 'P703', 'Q21102939']
ASK WHERE { resource:Q24272699 property:P703 resource:Q21102939 }
Klebsiella pneumoniae subsp. pneumoniae HS11286 auxiliary transport protein, membrane fusion protein (MFP) family    KPHS_27260
action is_in
entity Klebsiella pneumoniae subsp. pneumoniae HS11286
action find
entity auxiliary transport protein, membrane fusion protein (MFP) family    KPHS_27260
relation found in taxon
['auxiliary transport protein, membrane fusion protein (MFP) family    KPHS_27260', 'found in taxon', 'Klebsiella pneumoniae subsp. pneumoniae HS11286']
ASK WHERE { resource:auxiliary_transport_protein,_membrane_fusion_protein_(MFP)_family____KPHS_27260 property:found_in_taxon resource:Klebsiella_pneumoniae_subsp._pneumoniae_HS11286 }
[]
nutrient
SYSTEM
YES
(Q24272699,P703,Q21102939)
action is_in
entity Q21102939
action find
entity Q24272699
relation P703
[ANSWER]
['Q24272699', 'P703', 'Q21102939']
ASK WHERE { resource:Q24272699 property:P703 resource:Q21102939 }
Yes
action is_in
entity Klebsiella pneumoniae subsp. pneumoniae HS11286
action find
entity auxiliary transport protein, membrane fusion protein (MFP) family    KPHS_27260
relation found in taxon
['auxiliary transport protein, membrane fusion protein (MFP) family    KPHS_27260', 'found in taxon', 'Klebsiella pneumoniae subsp. pneumoniae HS11286']
ASK WHERE { resource:auxiliary_transport_protein,_membrane_fusion_protein_(MFP)_family____KPHS_27260 property:found_in_taxon resource:Klebsiella_pneumoniae_subsp._pneumoniae_HS11286 }
[]
Verification (Boolean) (All)
Verification|3 entities, all direct, 2 are query entities
Q27543363 Q24113268 Q27550441
P688
Q181394
USER
Does Pex34p YCL056C encode hypothetical protein    SMc00650 and Pex34p YCL056C ?
(Q27543363,P688,Q24113268) (Q27543363,P688,Q27550441)
action is_in
entity Q27543363
action intersection
action find_reverse
entity Q24113268
relation P688
action find_reverse
entity Q27550441
relation P688
['Q27543363', 'P688', 'Q24113268'] ['Q27543363', 'P688', 'Q27550441']
ASK WHERE { resource:Q27543363 property:P688 resource:Q24113268 . resource:Q27543363 property:P688 resource:Q27550441 }
Pex34p YCL056C hypothetical protein    SMc00650 Pex34p YCL056C
action is_in
entity Pex34p YCL056C
action intersection
action find_reverse
entity hypothetical protein    SMc00650
relation encodes
action find_reverse
entity Pex34p YCL056C
relation encodes
['Pex34p YCL056C', 'encodes', 'hypothetical protein    SMc00650'] ['Pex34p YCL056C', 'encodes', 'Pex34p YCL056C']
ASK WHERE { resource:Pex34p_YCL056C property:encodes resource:hypothetical_protein____SMc00650 . resource:Pex34p_YCL056C property:encodes resource:Pex34p_YCL056C }
[]
nutrient
SYSTEM
NO and YES respectively
(Q27543363,P688,Q24113268) (Q27543363,P688,Q27550441)
action is_in
entity Q27543363
action intersection
action find_reverse
entity Q24113268
relation P688
action find_reverse
entity Q27550441
relation P688
[ANSWER]
['Q27543363', 'P688', 'Q24113268'] ['Q27543363', 'P688', 'Q27550441']
ASK WHERE { resource:Q27543363 property:P688 resource:Q24113268 . resource:Q27543363 property:P688 resource:Q27550441 }
NO and YES respectively
action is_in
entity Pex34p YCL056C
action intersection
action find_reverse
entity hypothetical protein    SMc00650
relation encodes
action find_reverse
entity Pex34p YCL056C
relation encodes
['Pex34p YCL056C', 'encodes', 'hypothetical protein    SMc00650'] ['Pex34p YCL056C', 'encodes', 'Pex34p YCL056C']
ASK WHERE { resource:Pex34p_YCL056C property:encodes resource:hypothetical_protein____SMc00650 . resource:Pex34p_YCL056C property:encodes resource:Pex34p_YCL056C }
[]
Verification (Boolean) (All)
Verification|3 entities, all direct, 2 are query entities
Q27550441 Q138639 Q22327498
P681
Q5058355
USER
Is peroxisome and postsynaptic endocytic zone a cell component of Pex34p YCL056C ?
(Q27550441,P681,Q138639) (Q27550441,P681,Q22327498)
action is_in
entity Q27550441
action intersection
action find_reverse
entity Q138639
relation P681
action find_reverse
entity Q22327498
relation P681
['Q27550441', 'P681', 'Q138639'] ['Q27550441', 'P681', 'Q22327498']
ASK WHERE { resource:Q27550441 property:P681 resource:Q138639 . resource:Q27550441 property:P681 resource:Q22327498 }
Pex34p YCL056C peroxisome postsynaptic endocytic zone
action is_in
entity Pex34p YCL056C
action intersection
action find_reverse
entity peroxisome
relation cell component
action find_reverse
entity postsynaptic endocytic zone
relation cell component
['Pex34p YCL056C', 'cell component', 'peroxisome'] ['Pex34p YCL056C', 'cell component', 'postsynaptic endocytic zone']
ASK WHERE { resource:Pex34p_YCL056C property:cell_component resource:peroxisome . resource:Pex34p_YCL056C property:cell_component resource:postsynaptic_endocytic_zone }
[]
cellular component
SYSTEM
YES and NO respectively
(Q27550441,P681,Q138639) (Q27550441,P681,Q22327498)
action is_in
entity Q27550441
action intersection
action find_reverse
entity Q138639
relation P681
action find_reverse
entity Q22327498
relation P681
[ANSWER]
['Q27550441', 'P681', 'Q138639'] ['Q27550441', 'P681', 'Q22327498']
ASK WHERE { resource:Q27550441 property:P681 resource:Q138639 . resource:Q27550441 property:P681 resource:Q22327498 }
YES and NO respectively
action is_in
entity Pex34p YCL056C
action intersection
action find_reverse
entity peroxisome
relation cell component
action find_reverse
entity postsynaptic endocytic zone
relation cell component
['Pex34p YCL056C', 'cell component', 'peroxisome'] ['Pex34p YCL056C', 'cell component', 'postsynaptic endocytic zone']
ASK WHERE { resource:Pex34p_YCL056C property:cell_component resource:peroxisome . resource:Pex34p_YCL056C property:cell_component resource:postsynaptic_endocytic_zone }
[]
Simple Question (Ellipsis)
Incomplete|object parent is changed, subject and predicate remain same
Q27550441
Q15989253
USER
And which part?
(Q27550441,P681,c(Q15989253))
action filter_type
action find
entity Q27550441
relation P681
type Q15989253
['Q27550441', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?e WHERE { resource:Q27550441 property:P681 ?e . ?e rdf:type ontology:Q15989253 }
Pex34p YCL056C
action filter_type
action find
entity Pex34p YCL056C
relation cell component
type part
['Pex34p YCL056C', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?e WHERE { resource:Pex34p_YCL056C property:cell_component ?e . ?e rdf:type ontology:part }
[]
part
Q14349455 Q79899
SYSTEM
membrane, cytoplasm
Q14349455 Q79899
(Q27550441,P681,c(Q15989253))
action filter_type
action find
entity Q27550441
relation P681
type Q15989253
[ANSWERS]
['Q27550441', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?e WHERE { resource:Q27550441 property:P681 ?e . ?e rdf:type ontology:Q15989253 }
membrane cytoplasm
membrane cytoplasm
action filter_type
action find
entity Pex34p YCL056C
relation cell component
type part
['Pex34p YCL056C', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?e WHERE { resource:Pex34p_YCL056C property:cell_component ?e . ?e rdf:type ontology:part }
[]