Simple Question (Direct)
Simple Question
Q21132740
P703
Q16521
USER
Which taxon is ATP synthase F(0) complex subunit C2, mitochondrial found in ?
(Q21132740,P703,c(Q16521))
action filter_type
action find
entity Q21132740
relation P703
type Q16521
['Q21132740', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?o WHERE { resource:Q21132740 property:P703 ?o . ?o rdf:type ontology:Q16521 }
ATP synthase F(0) complex subunit C2, mitochondrial
action filter_type
action find
entity ATP synthase F(0) complex subunit C2, mitochondrial
relation found in taxon
type taxon
['ATP synthase F(0) complex subunit C2, mitochondrial', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?o WHERE { resource:ATP_synthase_F(0)_complex_subunit_C2,_mitochondrial property:found_in_taxon ?o . ?o rdf:type ontology:taxon }
[]
taxon
Q15978631
SYSTEM
Homo sapiens
Q15978631
(Q21132740,P703,c(Q16521))
action filter_type
action find
entity Q21132740
relation P703
type Q16521
[ANSWER] is ATP synthase F(0) complex subunit C2, mitochondrial found in
['Q21132740', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?o WHERE { resource:Q21132740 property:P703 ?o . ?o rdf:type ontology:Q16521 }
Homo sapiens
Homo sapiens is ATP synthase F(0) complex subunit C2, mitochondrial found in
Homo sapiens
action filter_type
action find
entity ATP synthase F(0) complex subunit C2, mitochondrial
relation found in taxon
type taxon
['ATP synthase F(0) complex subunit C2, mitochondrial', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?o WHERE { resource:ATP_synthase_F(0)_complex_subunit_C2,_mitochondrial property:found_in_taxon ?o . ?o rdf:type ontology:taxon }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21132740
P688
Q863908
USER
Which nucleic acid sequence encodes ATP synthase F(0) complex subunit C2, mitochondrial ?
(c(Q863908),P688,Q21132740)
action filter_type
action find_reverse
entity Q21132740
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q21132740']
SELECT DISTINCT ?v WHERE { ?v property:P688 resource:Q21132740 . ?v rdf:type ontology:Q863908 }
ATP synthase F(0) complex subunit C2, mitochondrial
action filter_type
action find_reverse
entity ATP synthase F(0) complex subunit C2, mitochondrial
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'ATP synthase F(0) complex subunit C2, mitochondrial']
SELECT DISTINCT ?v WHERE { ?v property:encodes resource:ATP_synthase_F(0)_complex_subunit_C2,_mitochondrial . ?v rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q17834057
SYSTEM
ATP5G2
Q17834057
(c(Q863908),P688,Q21132740)
action filter_type
action find_reverse
entity Q21132740
relation P688
type Q863908
[ANSWER] encodes ATP synthase F(0) complex subunit C2, mitochondrial
[{'concept': 'Q863908'}, 'P688', 'Q21132740']
SELECT DISTINCT ?v WHERE { ?v property:P688 resource:Q21132740 . ?v rdf:type ontology:Q863908 }
ATP5G2
ATP5G2 encodes ATP synthase F(0) complex subunit C2, mitochondrial
ATP5G2
action filter_type
action find_reverse
entity ATP synthase F(0) complex subunit C2, mitochondrial
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'ATP synthase F(0) complex subunit C2, mitochondrial']
SELECT DISTINCT ?v WHERE { ?v property:encodes resource:ATP_synthase_F(0)_complex_subunit_C2,_mitochondrial . ?v rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q17834057
P684
Q863908
USER
What is an otrhologus gene for that one ?
(Q17834057,P684,c(Q863908))
action filter_type
action find
entity Q17834057
relation P684
type Q863908
['Q17834057', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:Q863908 . resource:Q17834057 property:P684 ?m }
ATP5G2
action filter_type
action find
entity ATP5G2
relation ortholog
type nucleic acid sequence
['ATP5G2', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:nucleic_acid_sequence . resource:ATP5G2 property:ortholog ?m }
[]
nucleic acid sequence
Q18262895
SYSTEM
Atp5g2
Q18262895
(Q17834057,P684,c(Q863908))
action filter_type
action find
entity Q17834057
relation P684
type Q863908
An otrhologus gene for that one is an [ANSWER]
['Q17834057', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:Q863908 . resource:Q17834057 property:P684 ?m }
Atp5g2
An otrhologus gene for that one is an Atp5g2
Atp5g2
action filter_type
action find
entity ATP5G2
relation ortholog
type nucleic acid sequence
['ATP5G2', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:nucleic_acid_sequence . resource:ATP5G2 property:ortholog ?m }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q17834057
P702
Q181394
USER
Which nutrient does ATP5G2 encode ?
(c(Q181394),P702,Q17834057)
action filter_type
action find_reverse
entity Q17834057
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q17834057']
SELECT DISTINCT ?t WHERE { ?t property:P702 resource:Q17834057 . ?t rdf:type ontology:Q181394 }
ATP5G2
action filter_type
action find_reverse
entity ATP5G2
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'ATP5G2']
SELECT DISTINCT ?t WHERE { ?t property:encoded_by resource:ATP5G2 . ?t rdf:type ontology:nutrient }
[]
nutrient
Q21132740
SYSTEM
ATP synthase F(0) complex subunit C2, mitochondrial
Q21132740
(c(Q181394),P702,Q17834057)
action filter_type
action find_reverse
entity Q17834057
relation P702
type Q181394
ATP5G2 encodes the [ANSWER]
[{'concept': 'Q181394'}, 'P702', 'Q17834057']
SELECT DISTINCT ?t WHERE { ?t property:P702 resource:Q17834057 . ?t rdf:type ontology:Q181394 }
ATP synthase F(0) complex subunit C2, mitochondrial
ATP5G2 encodes the ATP synthase F(0) complex subunit C2, mitochondrial
ATP synthase F(0) complex subunit C2, mitochondrial
action filter_type
action find_reverse
entity ATP5G2
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'ATP5G2']
SELECT DISTINCT ?t WHERE { ?t property:encoded_by resource:ATP5G2 . ?t rdf:type ontology:nutrient }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21132740
P681
Q15989253
USER
Which parts are the components of that nutrient ?
(Q21132740,P681,c(Q15989253))
action filter_type
action find
entity Q21132740
relation P681
type Q15989253
['Q21132740', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?m WHERE { resource:Q21132740 property:P681 ?m . ?m rdf:type ontology:Q15989253 }
ATP synthase F(0) complex subunit C2, mitochondrial
action filter_type
action find
entity ATP synthase F(0) complex subunit C2, mitochondrial
relation cell component
type part
['ATP synthase F(0) complex subunit C2, mitochondrial', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?m WHERE { resource:ATP_synthase_F(0)_complex_subunit_C2,_mitochondrial property:cell_component ?m . ?m rdf:type ontology:part }
[]
part
Q39572 Q14349455
SYSTEM
mitochondrion, membrane
Q39572 Q14349455
(Q21132740,P681,c(Q15989253))
action filter_type
action find
entity Q21132740
relation P681
type Q15989253
The [ANSWERS] are the components of that nutrient
['Q21132740', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?m WHERE { resource:Q21132740 property:P681 ?m . ?m rdf:type ontology:Q15989253 }
mitochondrion membrane
The mitochondrion and membrane are the components of that nutrient
mitochondrion membrane
action filter_type
action find
entity ATP synthase F(0) complex subunit C2, mitochondrial
relation cell component
type part
['ATP synthase F(0) complex subunit C2, mitochondrial', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?m WHERE { resource:ATP_synthase_F(0)_complex_subunit_C2,_mitochondrial property:cell_component ?m . ?m rdf:type ontology:part }
[]
Clarification
Quantitative|Count|Logical operators|Indirect
P361
Q45948 Q15989253
USER
How many organelles and parts are that part a portion of ?
(Q39572,P361,c(Q45948)) (Q39572,P361,c(Q15989253)) (Q39572,P361,c(Q45948)) (Q39572,P361,c(Q15989253)) (Q14349455,P361,c(Q45948)) (Q14349455,P361,c(Q15989253))
['Q39572', 'P361', {'concept': 'Q45948'}] ['Q39572', 'P361', {'concept': 'Q15989253'}] ['Q39572', 'P361', {'concept': 'Q45948'}] ['Q39572', 'P361', {'concept': 'Q15989253'}] ['Q14349455', 'P361', {'concept': 'Q45948'}] ['Q14349455', 'P361', {'concept': 'Q15989253'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?x ) WHERE { { { resource:Q39572 property:P361 ?z } UNION { resource:Q39572 property:P361 ?y } UNION { resource:Q39572 property:P361 ?z } UNION { resource:Q39572 property:P361 ?y } UNION { resource:Q385601 property:P361 ?z } UNION { resource:Q385601 property:P361 ?y } } . ?z rdf:type ontology:Q45948 . ?y rdf:type ontology:Q153126 }
['mitochondrion', 'part of', {'concept': 'organelle'}] ['mitochondrion', 'part of', {'concept': 'part'}] ['mitochondrion', 'part of', {'concept': 'organelle'}] ['mitochondrion', 'part of', {'concept': 'part'}] ['membrane', 'part of', {'concept': 'organelle'}] ['membrane', 'part of', {'concept': 'part'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?x ) WHERE { { { resource:mitochondrion property:part_of ?z } UNION { resource:mitochondrion property:part_of ?y } UNION { resource:mitochondrion property:part_of ?z } UNION { resource:mitochondrion property:part_of ?y } UNION { resource:membrane property:part_of ?z } UNION { resource:membrane property:part_of ?y } } . ?z rdf:type ontology:organelle . ?y rdf:type ontology:part }
[]
organelle part
Quantitative|Count|Mult. entity type|Clarification
Q39572
SYSTEM
Did you mean mitochondrion ?
[ANSWER]
SELECT DISTINCT ( COUNT ( ?z ) AS ?x ) WHERE { { { resource:Q39572 property:P361 ?z } UNION { resource:Q39572 property:P361 ?y } UNION { resource:Q39572 property:P361 ?z } UNION { resource:Q39572 property:P361 ?y } UNION { resource:Q385601 property:P361 ?z } UNION { resource:Q385601 property:P361 ?y } } . ?z rdf:type ontology:Q45948 . ?y rdf:type ontology:Q153126 }
Did you mean mitochondrion ?
mitochondrion
SELECT DISTINCT ( COUNT ( ?z ) AS ?x ) WHERE { { { resource:mitochondrion property:part_of ?z } UNION { resource:mitochondrion property:part_of ?y } UNION { resource:mitochondrion property:part_of ?z } UNION { resource:mitochondrion property:part_of ?y } UNION { resource:membrane property:part_of ?z } UNION { resource:membrane property:part_of ?y } } . ?z rdf:type ontology:organelle . ?y rdf:type ontology:part }
[]
Quantitative Reasoning (Count) (All)
USER
Yes
(Q39572,P361,c(Q45948)) (Q39572,P361,c(Q15989253)) (Q39572,P361,c(Q45948)) (Q39572,P361,c(Q15989253)) (Q14349455,P361,c(Q45948)) (Q14349455,P361,c(Q15989253))
['Q39572', 'P361', {'concept': 'Q45948'}] ['Q39572', 'P361', {'concept': 'Q15989253'}] ['Q39572', 'P361', {'concept': 'Q45948'}] ['Q39572', 'P361', {'concept': 'Q15989253'}] ['Q14349455', 'P361', {'concept': 'Q45948'}] ['Q14349455', 'P361', {'concept': 'Q15989253'}]
['mitochondrion', 'part of', {'concept': 'organelle'}] ['mitochondrion', 'part of', {'concept': 'part'}] ['mitochondrion', 'part of', {'concept': 'organelle'}] ['mitochondrion', 'part of', {'concept': 'part'}] ['membrane', 'part of', {'concept': 'organelle'}] ['membrane', 'part of', {'concept': 'part'}]
[]
SYSTEM
1 organelles and 1 parts
Q22327470 Q22329155
(Q39572,P361,c(Q45948)) (Q39572,P361,c(Q15989253)) (Q39572,P361,c(Q45948)) (Q39572,P361,c(Q15989253)) (Q14349455,P361,c(Q45948)) (Q14349455,P361,c(Q15989253))
[ANSWER]
['Q39572', 'P361', {'concept': 'Q45948'}] ['Q39572', 'P361', {'concept': 'Q15989253'}] ['Q39572', 'P361', {'concept': 'Q45948'}] ['Q39572', 'P361', {'concept': 'Q15989253'}] ['Q14349455', 'P361', {'concept': 'Q45948'}] ['Q14349455', 'P361', {'concept': 'Q15989253'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?x ) WHERE { { { resource:Q39572 property:P361 ?z } UNION { resource:Q39572 property:P361 ?y } UNION { resource:Q39572 property:P361 ?z } UNION { resource:Q39572 property:P361 ?y } UNION { resource:Q385601 property:P361 ?z } UNION { resource:Q385601 property:P361 ?y } } . ?z rdf:type ontology:Q45948 . ?y rdf:type ontology:Q153126 }
mitochondrion-associated adherens complex ocelloid
1 organelles and 1 parts
['mitochondrion', 'part of', {'concept': 'organelle'}] ['mitochondrion', 'part of', {'concept': 'part'}] ['mitochondrion', 'part of', {'concept': 'organelle'}] ['mitochondrion', 'part of', {'concept': 'part'}] ['membrane', 'part of', {'concept': 'organelle'}] ['membrane', 'part of', {'concept': 'part'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?x ) WHERE { { { resource:mitochondrion property:part_of ?z } UNION { resource:mitochondrion property:part_of ?y } UNION { resource:mitochondrion property:part_of ?z } UNION { resource:mitochondrion property:part_of ?y } UNION { resource:membrane property:part_of ?z } UNION { resource:membrane property:part_of ?y } } . ?z rdf:type ontology:organelle . ?y rdf:type ontology:part }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Mult. entity type
Q18262895 Q18030474
P688
Q181394
USER
How many nutrients are encoded by Atp5g2 or CFP ?
(Q18262895,P688,c(Q181394)) (Q18030474,P688,c(Q181394))
action count
action union
action filter_type
action find
entity Q18262895
relation P688
type Q181394
action filter_type
action find
entity Q18030474
relation P688
type Q181394
['Q18262895', 'P688', {'concept': 'Q181394'}] ['Q18030474', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?v ) AS ?j ) WHERE { ?q property:P688 ?v . VALUES ( ?q ) { ( resource:Q18262895 ) ( resource:Q18030474 ) } }
Atp5g2 CFP
action count
action union
action filter_type
action find
entity Atp5g2
relation encodes
type nutrient
action filter_type
action find
entity CFP
relation encodes
type nutrient
['Atp5g2', 'encodes', {'concept': 'nutrient'}] ['CFP', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?v ) AS ?j ) WHERE { ?q property:encodes ?v . VALUES ( ?q ) { ( resource:Atp5g2 ) ( resource:CFP ) } }
[]
nutrient
SYSTEM
2
Q21983499 Q22677535
(Q18262895,P688,c(Q181394)) (Q18030474,P688,c(Q181394))
action count
action union
action filter_type
action find
entity Q18262895
relation P688
type Q181394
action filter_type
action find
entity Q18030474
relation P688
type Q181394
[ANSWER]
['Q18262895', 'P688', {'concept': 'Q181394'}] ['Q18030474', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?v ) AS ?j ) WHERE { ?q property:P688 ?v . VALUES ( ?q ) { ( resource:Q18262895 ) ( resource:Q18030474 ) } }
ATP synthase F(0) complex subunit C2, mitochondrial Properdin
2
action count
action union
action filter_type
action find
entity Atp5g2
relation encodes
type nutrient
action filter_type
action find
entity CFP
relation encodes
type nutrient
['Atp5g2', 'encodes', {'concept': 'nutrient'}] ['CFP', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?v ) AS ?j ) WHERE { ?q property:encodes ?v . VALUES ( ?q ) { ( resource:Atp5g2 ) ( resource:CFP ) } }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Mult. entity type
Q18262895 Q14916342
P688
Q181394
USER
How many nutrients are encoded by Atp5g2 or BGLAP ?
(Q18262895,P688,c(Q181394)) (Q14916342,P688,c(Q181394))
action count
action union
action filter_type
action find
entity Q18262895
relation P688
type Q181394
action filter_type
action find
entity Q14916342
relation P688
type Q181394
['Q18262895', 'P688', {'concept': 'Q181394'}] ['Q14916342', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?b ) AS ?f ) WHERE { VALUES ( ?x ) { ( resource:Q18262895 ) ( resource:Q14916342 ) } . ?x property:P688 ?b }
Atp5g2 BGLAP
action count
action union
action filter_type
action find
entity Atp5g2
relation encodes
type nutrient
action filter_type
action find
entity BGLAP
relation encodes
type nutrient
['Atp5g2', 'encodes', {'concept': 'nutrient'}] ['BGLAP', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?b ) AS ?f ) WHERE { VALUES ( ?x ) { ( resource:Atp5g2 ) ( resource:BGLAP ) } . ?x property:encodes ?b }
[]
nutrient
SYSTEM
2
Q415863 Q21983499
(Q18262895,P688,c(Q181394)) (Q14916342,P688,c(Q181394))
action count
action union
action filter_type
action find
entity Q18262895
relation P688
type Q181394
action filter_type
action find
entity Q14916342
relation P688
type Q181394
[ANSWER]
['Q18262895', 'P688', {'concept': 'Q181394'}] ['Q14916342', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?b ) AS ?f ) WHERE { VALUES ( ?x ) { ( resource:Q18262895 ) ( resource:Q14916342 ) } . ?x property:P688 ?b }
Osteocalcin ATP synthase F(0) complex subunit C2, mitochondrial
2
action count
action union
action filter_type
action find
entity Atp5g2
relation encodes
type nutrient
action filter_type
action find
entity BGLAP
relation encodes
type nutrient
['Atp5g2', 'encodes', {'concept': 'nutrient'}] ['BGLAP', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?b ) AS ?f ) WHERE { VALUES ( ?x ) { ( resource:Atp5g2 ) ( resource:BGLAP ) } . ?x property:encodes ?b }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q17914046 Q14916342
P688
Q181394
USER
Which nutrients are BGLAP or TRDMT1 an encoding of ?
OR((Q14916342,P688,c(Q181394)), (Q17914046,P688,c(Q181394)))
action filter_type
action union
action find
entity Q14916342
relation P688
action find
entity Q17914046
relation P688
type Q181394
{'OR': [['Q14916342', 'P688', {'concept': 'Q181394'}], ['Q17914046', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?h WHERE { { VALUES ( ?g ) { ( resource:Q14916342 ) ( resource:Q17914046 ) } . ?g property:P688 ?h } . ?h rdf:type ontology:Q181394 }
TRDMT1 BGLAP
action filter_type
action union
action find
entity BGLAP
relation encodes
action find
entity TRDMT1
relation encodes
type nutrient
{'OR': [['BGLAP', 'encodes', {'concept': 'nutrient'}], ['TRDMT1', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?h WHERE { { VALUES ( ?g ) { ( resource:BGLAP ) ( resource:TRDMT1 ) } . ?g property:encodes ?h } . ?h rdf:type ontology:nutrient }
[]
nutrient
Q415863 Q21144796 Q21135823
SYSTEM
Osteocalcin, tRNA (cytosine(38)-C(5))-methyltransferase, tRNA (cytosine(38)-C(5))-methyltransferase
Q415863 Q21144796 Q21135823
OR((Q14916342,P688,c(Q181394)), (Q17914046,P688,c(Q181394)))
action filter_type
action union
action find
entity Q14916342
relation P688
action find
entity Q17914046
relation P688
type Q181394
[ANSWERS] are BGLAP or TRDMT1 an encoding of
{'OR': [['Q14916342', 'P688', {'concept': 'Q181394'}], ['Q17914046', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?h WHERE { { VALUES ( ?g ) { ( resource:Q14916342 ) ( resource:Q17914046 ) } . ?g property:P688 ?h } . ?h rdf:type ontology:Q181394 }
Osteocalcin tRNA (cytosine(38)-C(5))-methyltransferase tRNA (cytosine(38)-C(5))-methyltransferase
Osteocalcin, tRNA (cytosine(38)-C(5))-methyltransferase and tRNA (cytosine(38)-C(5))-methyltransferase are BGLAP or TRDMT1 an encoding of
Osteocalcin tRNA (cytosine(38)-C(5))-methyltransferase tRNA (cytosine(38)-C(5))-methyltransferase
action filter_type
action union
action find
entity BGLAP
relation encodes
action find
entity TRDMT1
relation encodes
type nutrient
{'OR': [['BGLAP', 'encodes', {'concept': 'nutrient'}], ['TRDMT1', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?h WHERE { { VALUES ( ?g ) { ( resource:BGLAP ) ( resource:TRDMT1 ) } . ?g property:encodes ?h } . ?h rdf:type ontology:nutrient }
[]