Simple Question (Direct)
Simple Question
Q23553172
P680
Q44424
USER
Which the chemical bonds that represents the molecular function of GTP cyclohydrolase I    BPSS0040 ?
(Q23553172,P680,c(Q44424))
action filter_type
action find
entity Q23553172
relation P680
type Q44424
['Q23553172', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?i WHERE { resource:Q23553172 property:P680 ?i . ?i rdf:type ontology:Q44424 }
GTP cyclohydrolase I    BPSS0040
action filter_type
action find
entity GTP cyclohydrolase I    BPSS0040
relation molecular function
type chemical bond
['GTP cyclohydrolase I    BPSS0040', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?i WHERE { resource:GTP_cyclohydrolase_I____BPSS0040 property:molecular_function ?i . ?i rdf:type ontology:chemical_bond }
[]
chemical bond
Q14633865 Q13667380
SYSTEM
zinc ion binding, metal ion binding
Q14633865 Q13667380
(Q23553172,P680,c(Q44424))
action filter_type
action find
entity Q23553172
relation P680
type Q44424
Represents The [ANSWERS]
['Q23553172', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?i WHERE { resource:Q23553172 property:P680 ?i . ?i rdf:type ontology:Q44424 }
zinc ion binding metal ion binding
Represents The zinc ion binding and metal ion binding
zinc ion binding metal ion binding
action filter_type
action find
entity GTP cyclohydrolase I    BPSS0040
relation molecular function
type chemical bond
['GTP cyclohydrolase I    BPSS0040', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?i WHERE { resource:GTP_cyclohydrolase_I____BPSS0040 property:molecular_function ?i . ?i rdf:type ontology:chemical_bond }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23553172
P681
Q15989253
USER
Which is the part that is a component of GTP cyclohydrolase I    BPSS0040 ?
(Q23553172,P681,c(Q15989253))
action filter_type
action find
entity Q23553172
relation P681
type Q15989253
['Q23553172', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?i WHERE { resource:Q23553172 property:P681 ?i . ?i rdf:type ontology:Q15989253 }
GTP cyclohydrolase I    BPSS0040
action filter_type
action find
entity GTP cyclohydrolase I    BPSS0040
relation cell component
type part
['GTP cyclohydrolase I    BPSS0040', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?i WHERE { resource:GTP_cyclohydrolase_I____BPSS0040 property:cell_component ?i . ?i rdf:type ontology:part }
[]
part
Q79899
SYSTEM
cytoplasm
Q79899
(Q23553172,P681,c(Q15989253))
action filter_type
action find
entity Q23553172
relation P681
type Q15989253
[ANSWER] is the part that is a component of GTP cyclohydrolase I BPSS0040
['Q23553172', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?i WHERE { resource:Q23553172 property:P681 ?i . ?i rdf:type ontology:Q15989253 }
cytoplasm
Cytoplasm is the part that is a component of GTP cyclohydrolase I BPSS0040
cytoplasm
action filter_type
action find
entity GTP cyclohydrolase I    BPSS0040
relation cell component
type part
['GTP cyclohydrolase I    BPSS0040', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?i WHERE { resource:GTP_cyclohydrolase_I____BPSS0040 property:cell_component ?i . ?i rdf:type ontology:part }
[]
Logical Reasoning (All)
Logical|Intersection|Single_Relation|Incomplete
Q23536227 Q23553172
P681
Q15989253
USER
And also lactate dehydrogenase    Moth_1826
AND((Q23553172,P681,c(Q15989253)), (Q23536227,P681,c(Q15989253)))
action filter_type
action intersection
action find
entity Q23553172
relation P681
action find
entity Q23536227
relation P681
type Q15989253
{'AND': [['Q23553172', 'P681', {'concept': 'Q15989253'}], ['Q23536227', 'P681', {'concept': 'Q15989253'}]]}
SELECT DISTINCT ?g WHERE { resource:Q23553172 property:P681 ?g . resource:Q23536227 property:P681 ?g . ?g rdf:type ontology:Q15989253 }
lactate dehydrogenase    Moth_1826 GTP cyclohydrolase I    BPSS0040
action filter_type
action intersection
action find
entity GTP cyclohydrolase I    BPSS0040
relation cell component
action find
entity lactate dehydrogenase    Moth_1826
relation cell component
type part
{'AND': [['GTP cyclohydrolase I    BPSS0040', 'cell component', {'concept': 'part'}], ['lactate dehydrogenase    Moth_1826', 'cell component', {'concept': 'part'}]]}
SELECT DISTINCT ?g WHERE { resource:GTP_cyclohydrolase_I____BPSS0040 property:cell_component ?g . resource:lactate_dehydrogenase____Moth_1826 property:cell_component ?g . ?g rdf:type ontology:part }
[]
part
Q79899
SYSTEM
cytoplasm
Q79899
AND((Q23553172,P681,c(Q15989253)), (Q23536227,P681,c(Q15989253)))
action filter_type
action intersection
action find
entity Q23553172
relation P681
action find
entity Q23536227
relation P681
type Q15989253
[ANSWER]
{'AND': [['Q23553172', 'P681', {'concept': 'Q15989253'}], ['Q23536227', 'P681', {'concept': 'Q15989253'}]]}
SELECT DISTINCT ?g WHERE { resource:Q23553172 property:P681 ?g . resource:Q23536227 property:P681 ?g . ?g rdf:type ontology:Q15989253 }
cytoplasm
cytoplasm
action filter_type
action intersection
action find
entity GTP cyclohydrolase I    BPSS0040
relation cell component
action find
entity lactate dehydrogenase    Moth_1826
relation cell component
type part
{'AND': [['GTP cyclohydrolase I    BPSS0040', 'cell component', {'concept': 'part'}], ['lactate dehydrogenase    Moth_1826', 'cell component', {'concept': 'part'}]]}
SELECT DISTINCT ?g WHERE { resource:GTP_cyclohydrolase_I____BPSS0040 property:cell_component ?g . resource:lactate_dehydrogenase____Moth_1826 property:cell_component ?g . ?g rdf:type ontology:part }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type
Q23536227
P682
Q1057
USER
How many metabolic processes are lactate dehydrogenase    Moth_1826 involved in ?
(Q23536227,P682,c(Q1057))
action count
action filter_type
action find
entity Q23536227
relation P682
type Q1057
['Q23536227', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ( COUNT ( ?r ) AS ?z ) WHERE { resource:Q23536227 property:P682 ?r . ?r rdf:type ontology:Q1057 }
lactate dehydrogenase    Moth_1826
action count
action filter_type
action find
entity lactate dehydrogenase    Moth_1826
relation biological process
type metabolic process
['lactate dehydrogenase    Moth_1826', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ( COUNT ( ?r ) AS ?z ) WHERE { resource:lactate_dehydrogenase____Moth_1826 property:biological_process ?r . ?r rdf:type ontology:metabolic_process }
[]
metabolic process
SYSTEM
2
Q14762260 Q14349764
(Q23536227,P682,c(Q1057))
action count
action filter_type
action find
entity Q23536227
relation P682
type Q1057
[ANSWER]
['Q23536227', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ( COUNT ( ?r ) AS ?z ) WHERE { resource:Q23536227 property:P682 ?r . ?r rdf:type ontology:Q1057 }
carbohydrate metabolic process oxidation-reduction process
2
action count
action filter_type
action find
entity lactate dehydrogenase    Moth_1826
relation biological process
type metabolic process
['lactate dehydrogenase    Moth_1826', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ( COUNT ( ?r ) AS ?z ) WHERE { resource:lactate_dehydrogenase____Moth_1826 property:biological_process ?r . ?r rdf:type ontology:metabolic_process }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23525776
P682
Q1057
USER
Which metabolic process is methionine adenosyltransferase    CA_C2856 involved in ?
(Q23525776,P682,c(Q1057))
action filter_type
action find
entity Q23525776
relation P682
type Q1057
['Q23525776', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?p WHERE { resource:Q23525776 property:P682 ?p . ?p rdf:type ontology:Q1057 }
methionine adenosyltransferase    CA_C2856
action filter_type
action find
entity methionine adenosyltransferase    CA_C2856
relation biological process
type metabolic process
['methionine adenosyltransferase    CA_C2856', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?p WHERE { resource:methionine_adenosyltransferase____CA_C2856 property:biological_process ?p . ?p rdf:type ontology:metabolic_process }
[]
metabolic process
Q14819379
SYSTEM
one-carbon metabolic process
Q14819379
(Q23525776,P682,c(Q1057))
action filter_type
action find
entity Q23525776
relation P682
type Q1057
[ANSWER] is methionine adenosyltransferase CA_C2856 involved in
['Q23525776', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?p WHERE { resource:Q23525776 property:P682 ?p . ?p rdf:type ontology:Q1057 }
one-carbon metabolic process
One-carbon metabolic process is methionine adenosyltransferase CA_C2856 involved in
one-carbon metabolic process
action filter_type
action find
entity methionine adenosyltransferase    CA_C2856
relation biological process
type metabolic process
['methionine adenosyltransferase    CA_C2856', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?p WHERE { resource:methionine_adenosyltransferase____CA_C2856 property:biological_process ?p . ?p rdf:type ontology:metabolic_process }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23525776
P702
Q863908
USER
What encodes methionine adenosyltransferase    CA_C2856 ?
(Q23525776,P702,c(Q863908))
action filter_type
action find
entity Q23525776
relation P702
type Q863908
['Q23525776', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?w WHERE { resource:Q23525776 property:P702 ?w . ?w rdf:type ontology:Q863908 }
methionine adenosyltransferase    CA_C2856
action filter_type
action find
entity methionine adenosyltransferase    CA_C2856
relation encoded by
type nucleic acid sequence
['methionine adenosyltransferase    CA_C2856', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?w WHERE { resource:methionine_adenosyltransferase____CA_C2856 property:encoded_by ?w . ?w rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23378824
SYSTEM
methionine adenosyltransferase    CA_C2856
Q23378824
(Q23525776,P702,c(Q863908))
action filter_type
action find
entity Q23525776
relation P702
type Q863908
Methionine adenosyltransferase CA C2856 encodes methionine adenosyltransferase CA_C2856
['Q23525776', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?w WHERE { resource:Q23525776 property:P702 ?w . ?w rdf:type ontology:Q863908 }
methionine adenosyltransferase    CA_C2856
Methionine adenosyltransferase CA C2856 encodes methionine adenosyltransferase CA_C2856
methionine adenosyltransferase    CA_C2856
action filter_type
action find
entity methionine adenosyltransferase    CA_C2856
relation encoded by
type nucleic acid sequence
['methionine adenosyltransferase    CA_C2856', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?w WHERE { resource:methionine_adenosyltransferase____CA_C2856 property:encoded_by ?w . ?w rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q23051231
Q863908
USER
And how about putative nitrogen fixation protein nifQ    RSP_0533?
(Q23051231,P702,c(Q863908))
action filter_type
action find
entity Q23051231
relation P702
type Q863908
['Q23051231', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?q WHERE { resource:Q23051231 property:P702 ?q . ?q rdf:type ontology:Q863908 }
putative nitrogen fixation protein nifQ    RSP_0533
action filter_type
action find
entity putative nitrogen fixation protein nifQ    RSP_0533
relation encoded by
type nucleic acid sequence
['putative nitrogen fixation protein nifQ    RSP_0533', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?q WHERE { resource:putative_nitrogen_fixation_protein_nifQ____RSP_0533 property:encoded_by ?q . ?q rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23028941
SYSTEM
putative nitrogen fixation protein nifQ    RSP_0533
Q23028941
(Q23051231,P702,c(Q863908))
action filter_type
action find
entity Q23051231
relation P702
type Q863908
[ANSWER]
['Q23051231', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?q WHERE { resource:Q23051231 property:P702 ?q . ?q rdf:type ontology:Q863908 }
putative nitrogen fixation protein nifQ    RSP_0533
putative nitrogen fixation protein nifQ    RSP_0533
action filter_type
action find
entity putative nitrogen fixation protein nifQ    RSP_0533
relation encoded by
type nucleic acid sequence
['putative nitrogen fixation protein nifQ    RSP_0533', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?q WHERE { resource:putative_nitrogen_fixation_protein_nifQ____RSP_0533 property:encoded_by ?q . ?q rdf:type ontology:nucleic_acid_sequence }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type
Q23028941
P688
Q181394
USER
How many nutrients are encoded by putative nitrogen fixation protein nifQ    RSP_0533 ?
(Q23028941,P688,c(Q181394))
action count
action filter_type
action find
entity Q23028941
relation P688
type Q181394
['Q23028941', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?i ) AS ?w ) WHERE { resource:Q23028941 property:P688 ?i . ?i rdf:type ontology:Q181394 }
putative nitrogen fixation protein nifQ    RSP_0533
action count
action filter_type
action find
entity putative nitrogen fixation protein nifQ    RSP_0533
relation encodes
type nutrient
['putative nitrogen fixation protein nifQ    RSP_0533', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?i ) AS ?w ) WHERE { resource:putative_nitrogen_fixation_protein_nifQ____RSP_0533 property:encodes ?i . ?i rdf:type ontology:nutrient }
[]
nutrient
SYSTEM
1
Q23051231
(Q23028941,P688,c(Q181394))
action count
action filter_type
action find
entity Q23028941
relation P688
type Q181394
[ANSWER]
['Q23028941', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?i ) AS ?w ) WHERE { resource:Q23028941 property:P688 ?i . ?i rdf:type ontology:Q181394 }
putative nitrogen fixation protein nifQ    RSP_0533
1
action count
action filter_type
action find
entity putative nitrogen fixation protein nifQ    RSP_0533
relation encodes
type nutrient
['putative nitrogen fixation protein nifQ    RSP_0533', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?i ) AS ?w ) WHERE { resource:putative_nitrogen_fixation_protein_nifQ____RSP_0533 property:encodes ?i . ?i rdf:type ontology:nutrient }
[]
Quantitative Reasoning (Count) (All)
Incomplete count-based ques
Q23360186
Q181394
USER
And how about NADH dehydrogenase subunit K    CBU_1438?
(Q23360186,P688,c(Q181394))
action count
action filter_type
action find
entity Q23360186
relation P688
type Q181394
['Q23360186', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?r ) AS ?n ) WHERE { ?r rdf:type ontology:Q181394 . resource:Q23360186 property:P688 ?r }
NADH dehydrogenase subunit K    CBU_1438
action count
action filter_type
action find
entity NADH dehydrogenase subunit K    CBU_1438
relation encodes
type nutrient
['NADH dehydrogenase subunit K    CBU_1438', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?r ) AS ?n ) WHERE { ?r rdf:type ontology:nutrient . resource:NADH_dehydrogenase_subunit_K____CBU_1438 property:encodes ?r }
[]
nutrient
SYSTEM
1
(Q23360186,P688,c(Q181394))
action count
action filter_type
action find
entity Q23360186
relation P688
type Q181394
[ANSWER]
['Q23360186', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?r ) AS ?n ) WHERE { ?r rdf:type ontology:Q181394 . resource:Q23360186 property:P688 ?r }
1
action count
action filter_type
action find
entity NADH dehydrogenase subunit K    CBU_1438
relation encodes
type nutrient
['NADH dehydrogenase subunit K    CBU_1438', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?r ) AS ?n ) WHERE { ?r rdf:type ontology:nutrient . resource:NADH_dehydrogenase_subunit_K____CBU_1438 property:encodes ?r }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type
Q23028941
P702
Q181394
USER
How many nutrients do putative nitrogen fixation protein nifQ    RSP_0533 encode ?
(c(Q181394),P702,Q23028941)
action count
action filter_type
action find_reverse
entity Q23028941
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q23028941']
SELECT DISTINCT ( COUNT ( ?u ) AS ?p ) WHERE { ?u property:P702 resource:Q23028941 . ?u rdf:type ontology:Q181394 }
putative nitrogen fixation protein nifQ    RSP_0533
action count
action filter_type
action find_reverse
entity putative nitrogen fixation protein nifQ    RSP_0533
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'putative nitrogen fixation protein nifQ    RSP_0533']
SELECT DISTINCT ( COUNT ( ?u ) AS ?p ) WHERE { ?u property:encoded_by resource:putative_nitrogen_fixation_protein_nifQ____RSP_0533 . ?u rdf:type ontology:nutrient }
[]
nutrient
SYSTEM
1
Q23051231
(c(Q181394),P702,Q23028941)
action count
action filter_type
action find_reverse
entity Q23028941
relation P702
type Q181394
[ANSWER]
[{'concept': 'Q181394'}, 'P702', 'Q23028941']
SELECT DISTINCT ( COUNT ( ?u ) AS ?p ) WHERE { ?u property:P702 resource:Q23028941 . ?u rdf:type ontology:Q181394 }
putative nitrogen fixation protein nifQ    RSP_0533
1
action count
action filter_type
action find_reverse
entity putative nitrogen fixation protein nifQ    RSP_0533
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'putative nitrogen fixation protein nifQ    RSP_0533']
SELECT DISTINCT ( COUNT ( ?u ) AS ?p ) WHERE { ?u property:encoded_by resource:putative_nitrogen_fixation_protein_nifQ____RSP_0533 . ?u rdf:type ontology:nutrient }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23028941
P703
Q631147
USER
Where is putative nitrogen fixation protein nifQ    RSP_0533 found ?
(Q23028941,P703,c(Q631147))
action filter_type
action find
entity Q23028941
relation P703
type Q631147
['Q23028941', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?y WHERE { resource:Q23028941 property:P703 ?y . ?y rdf:type ontology:Q631147 }
putative nitrogen fixation protein nifQ    RSP_0533
action filter_type
action find
entity putative nitrogen fixation protein nifQ    RSP_0533
relation found in taxon
type infraspecific name
['putative nitrogen fixation protein nifQ    RSP_0533', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?y WHERE { resource:putative_nitrogen_fixation_protein_nifQ____RSP_0533 property:found_in_taxon ?y . ?y rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102953
SYSTEM
Rhodobacter sphaeroides 2.4.1
Q21102953
(Q23028941,P703,c(Q631147))
action filter_type
action find
entity Q23028941
relation P703
type Q631147
Putative nitrogen fixation protein nifQ RSP_0533 is found in [ANSWER]
['Q23028941', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?y WHERE { resource:Q23028941 property:P703 ?y . ?y rdf:type ontology:Q631147 }
Rhodobacter sphaeroides 2.4.1
Putative nitrogen fixation protein nifQ RSP_0533 is found in Rhodobacter sphaeroides 2.4.1
Rhodobacter sphaeroides 2.4.1
action filter_type
action find
entity putative nitrogen fixation protein nifQ    RSP_0533
relation found in taxon
type infraspecific name
['putative nitrogen fixation protein nifQ    RSP_0533', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?y WHERE { resource:putative_nitrogen_fixation_protein_nifQ____RSP_0533 property:found_in_taxon ?y . ?y rdf:type ontology:infraspecific_name }
[]