Simple Question (Direct)
Simple Question
Q23063717
P702
Q863908
USER
What is the gene that encodes 2-oxoglutarate dehydrogenase subunit E1    LA_1224 ?
(Q23063717,P702,c(Q863908))
action filter_type
action find
entity Q23063717
relation P702
type Q863908
['Q23063717', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:Q863908 . resource:Q23063717 property:P702 ?b }
2-oxoglutarate dehydrogenase subunit E1    LA_1224
action filter_type
action find
entity 2-oxoglutarate dehydrogenase subunit E1    LA_1224
relation encoded by
type nucleic acid sequence
['2-oxoglutarate dehydrogenase subunit E1    LA_1224', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:nucleic_acid_sequence . resource:2-oxoglutarate_dehydrogenase_subunit_E1____LA_1224 property:encoded_by ?b }
[]
nucleic acid sequence
Q23024438
SYSTEM
2-oxoglutarate dehydrogenase subunit E1    LA_1224
Q23024438
(Q23063717,P702,c(Q863908))
action filter_type
action find
entity Q23063717
relation P702
type Q863908
The gene that encodes 2-oxoglutarate dehydrogenase subunit E1 LA_1224 is codes 2-oxoglutarate dehydrogenase subunit E1 LA 1224
['Q23063717', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:Q863908 . resource:Q23063717 property:P702 ?b }
2-oxoglutarate dehydrogenase subunit E1    LA_1224
The gene that encodes 2-oxoglutarate dehydrogenase subunit E1 LA_1224 is codes 2-oxoglutarate dehydrogenase subunit E1 LA 1224
2-oxoglutarate dehydrogenase subunit E1    LA_1224
action filter_type
action find
entity 2-oxoglutarate dehydrogenase subunit E1    LA_1224
relation encoded by
type nucleic acid sequence
['2-oxoglutarate dehydrogenase subunit E1    LA_1224', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:nucleic_acid_sequence . resource:2-oxoglutarate_dehydrogenase_subunit_E1____LA_1224 property:encoded_by ?b }
[]
Verification (Boolean) (All)
Verification|3 entities, 2 direct, 2(direct) are query entities, subject is indirect
Q23024438 Q23476077 Q27470165
P688
Q181394
USER
Does that nucleic acid sequence encodes hypothetical protein    Pro_1223 and entericidin B membrane lipoprotein    NRG857_21105 ?
(Q23024438,P688,Q23476077) (Q23024438,P688,Q27470165)
action is_in
entity Q23024438
action intersection
action find_reverse
entity Q23476077
relation P688
action find_reverse
entity Q27470165
relation P688
['Q23024438', 'P688', 'Q23476077'] ['Q23024438', 'P688', 'Q27470165']
ASK WHERE { resource:Q23024438 property:P688 resource:Q27470165 . resource:Q23024438 property:P688 resource:Q23476077 }
2-oxoglutarate dehydrogenase subunit E1    LA_1224 hypothetical protein    Pro_1223 entericidin B membrane lipoprotein    NRG857_21105
action is_in
entity 2-oxoglutarate dehydrogenase subunit E1    LA_1224
action intersection
action find_reverse
entity hypothetical protein    Pro_1223
relation encodes
action find_reverse
entity entericidin B membrane lipoprotein    NRG857_21105
relation encodes
['2-oxoglutarate dehydrogenase subunit E1    LA_1224', 'encodes', 'hypothetical protein    Pro_1223'] ['2-oxoglutarate dehydrogenase subunit E1    LA_1224', 'encodes', 'entericidin B membrane lipoprotein    NRG857_21105']
ASK WHERE { resource:2-oxoglutarate_dehydrogenase_subunit_E1____LA_1224 property:encodes resource:entericidin_B_membrane_lipoprotein____NRG857_21105 . resource:2-oxoglutarate_dehydrogenase_subunit_E1____LA_1224 property:encodes resource:hypothetical_protein____Pro_1223 }
[]
nutrient
SYSTEM
NO
(Q23024438,P688,Q23476077) (Q23024438,P688,Q27470165)
action is_in
entity Q23024438
action intersection
action find_reverse
entity Q23476077
relation P688
action find_reverse
entity Q27470165
relation P688
[ANSWER]
['Q23024438', 'P688', 'Q23476077'] ['Q23024438', 'P688', 'Q27470165']
ASK WHERE { resource:Q23024438 property:P688 resource:Q27470165 . resource:Q23024438 property:P688 resource:Q23476077 }
No
action is_in
entity 2-oxoglutarate dehydrogenase subunit E1    LA_1224
action intersection
action find_reverse
entity hypothetical protein    Pro_1223
relation encodes
action find_reverse
entity entericidin B membrane lipoprotein    NRG857_21105
relation encodes
['2-oxoglutarate dehydrogenase subunit E1    LA_1224', 'encodes', 'hypothetical protein    Pro_1223'] ['2-oxoglutarate dehydrogenase subunit E1    LA_1224', 'encodes', 'entericidin B membrane lipoprotein    NRG857_21105']
ASK WHERE { resource:2-oxoglutarate_dehydrogenase_subunit_E1____LA_1224 property:encodes resource:entericidin_B_membrane_lipoprotein____NRG857_21105 . resource:2-oxoglutarate_dehydrogenase_subunit_E1____LA_1224 property:encodes resource:hypothetical_protein____Pro_1223 }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23063717
P703
Q631147
USER
Which taxon is 2-oxoglutarate dehydrogenase subunit E1    LA_1224 a part of ?
(Q23063717,P703,c(Q631147))
action filter_type
action find
entity Q23063717
relation P703
type Q631147
['Q23063717', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?j WHERE { resource:Q23063717 property:P703 ?j . ?j rdf:type ontology:Q631147 }
2-oxoglutarate dehydrogenase subunit E1    LA_1224
action filter_type
action find
entity 2-oxoglutarate dehydrogenase subunit E1    LA_1224
relation found in taxon
type infraspecific name
['2-oxoglutarate dehydrogenase subunit E1    LA_1224', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?j WHERE { resource:2-oxoglutarate_dehydrogenase_subunit_E1____LA_1224 property:found_in_taxon ?j . ?j rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21065229
SYSTEM
Leptospira interrogans serovar Lai str. 56601
Q21065229
(Q23063717,P703,c(Q631147))
action filter_type
action find
entity Q23063717
relation P703
type Q631147
[ANSWER] is 2-oxoglutarate dehydrogenase subunit E1 LA_1224 a part of
['Q23063717', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?j WHERE { resource:Q23063717 property:P703 ?j . ?j rdf:type ontology:Q631147 }
Leptospira interrogans serovar Lai str. 56601
Leptospira interrogans serovar Lai str. 56601 is 2-oxoglutarate dehydrogenase subunit E1 LA_1224 a part of
Leptospira interrogans serovar Lai str. 56601
action filter_type
action find
entity 2-oxoglutarate dehydrogenase subunit E1    LA_1224
relation found in taxon
type infraspecific name
['2-oxoglutarate dehydrogenase subunit E1    LA_1224', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?j WHERE { resource:2-oxoglutarate_dehydrogenase_subunit_E1____LA_1224 property:found_in_taxon ?j . ?j rdf:type ontology:infraspecific_name }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q27747405 Q23063717
P682
Q1057
USER
Which metabolic processes are 2-oxoglutarate dehydrogenase subunit E1    LA_1224 or Rieske (2Fe-2S) domain-containing protein    MSMEG_1459 involved in ?
OR((Q23063717,P682,c(Q1057)), (Q27747405,P682,c(Q1057)))
action filter_type
action union
action find
entity Q23063717
relation P682
action find
entity Q27747405
relation P682
type Q1057
{'OR': [['Q23063717', 'P682', {'concept': 'Q1057'}], ['Q27747405', 'P682', {'concept': 'Q1057'}]]}
SELECT DISTINCT ?t WHERE { ?t rdf:type ontology:Q1057 . { VALUES ( ?i ) { ( resource:Q27747405 ) ( resource:Q23063717 ) } . ?i property:P682 ?t } }
Rieske (2Fe-2S) domain-containing protein    MSMEG_1459 2-oxoglutarate dehydrogenase subunit E1    LA_1224
action filter_type
action union
action find
entity 2-oxoglutarate dehydrogenase subunit E1    LA_1224
relation biological process
action find
entity Rieske (2Fe-2S) domain-containing protein    MSMEG_1459
relation biological process
type metabolic process
{'OR': [['2-oxoglutarate dehydrogenase subunit E1    LA_1224', 'biological process', {'concept': 'metabolic process'}], ['Rieske (2Fe-2S) domain-containing protein    MSMEG_1459', 'biological process', {'concept': 'metabolic process'}]]}
SELECT DISTINCT ?t WHERE { ?t rdf:type ontology:metabolic_process . { VALUES ( ?i ) { ( resource:Rieske_(2Fe-2S)_domain-containing_protein____MSMEG_1459 ) ( resource:2-oxoglutarate_dehydrogenase_subunit_E1____LA_1224 ) } . ?i property:biological_process ?t } }
[]
metabolic process
Q14349764 Q133895
SYSTEM
oxidation-reduction process, tricarboxylic acid cycle
Q14349764 Q133895
OR((Q23063717,P682,c(Q1057)), (Q27747405,P682,c(Q1057)))
action filter_type
action union
action find
entity Q23063717
relation P682
action find
entity Q27747405
relation P682
type Q1057
[ANSWERS] are 2-oxoglutarate dehydrogenase subunit E1 LA_1224 or Rieske (2Fe-2S) domain-containing protein MSMEG_1459 involved in
{'OR': [['Q23063717', 'P682', {'concept': 'Q1057'}], ['Q27747405', 'P682', {'concept': 'Q1057'}]]}
SELECT DISTINCT ?t WHERE { ?t rdf:type ontology:Q1057 . { VALUES ( ?i ) { ( resource:Q27747405 ) ( resource:Q23063717 ) } . ?i property:P682 ?t } }
oxidation-reduction process tricarboxylic acid cycle
Oxidation-reduction process and tricarboxylic acid cycle are 2-oxoglutarate dehydrogenase subunit E1 LA_1224 or Rieske (2Fe-2S) domain-containing protein MSMEG_1459 involved in
oxidation-reduction process tricarboxylic acid cycle
action filter_type
action union
action find
entity 2-oxoglutarate dehydrogenase subunit E1    LA_1224
relation biological process
action find
entity Rieske (2Fe-2S) domain-containing protein    MSMEG_1459
relation biological process
type metabolic process
{'OR': [['2-oxoglutarate dehydrogenase subunit E1    LA_1224', 'biological process', {'concept': 'metabolic process'}], ['Rieske (2Fe-2S) domain-containing protein    MSMEG_1459', 'biological process', {'concept': 'metabolic process'}]]}
SELECT DISTINCT ?t WHERE { ?t rdf:type ontology:metabolic_process . { VALUES ( ?i ) { ( resource:Rieske_(2Fe-2S)_domain-containing_protein____MSMEG_1459 ) ( resource:2-oxoglutarate_dehydrogenase_subunit_E1____LA_1224 ) } . ?i property:biological_process ?t } }
[]
Verification (Boolean) (All)
Verification|one entity, multiple entities (as object) referred indirectly
Q27743806
P682
Q181394
USER
Are MmcI protein    MSMEG_6885 involved in those metabolic processes ?
(Q27743806,P682,Q14349764) (Q27743806,P682,Q133895)
action is_in
entity prev_answer
action find
entity Q27743806
relation P682
['Q27743806', 'P682', 'Q14349764'] ['Q27743806', 'P682', 'Q133895']
ASK WHERE { VALUES ( ?u ) { ( resource:Q14349764 ) ( resource:Q133895 ) } . resource:Q27743806 property:P682 ?u }
MmcI protein    MSMEG_6885
action is_in
entity prev_answer
action find
entity MmcI protein    MSMEG_6885
relation biological process
['MmcI protein    MSMEG_6885', 'biological process', 'oxidation-reduction process'] ['MmcI protein    MSMEG_6885', 'biological process', 'tricarboxylic acid cycle']
ASK WHERE { VALUES ( ?u ) { ( resource:oxidation-reduction_process ) ( resource:tricarboxylic_acid_cycle ) } . resource:MmcI_protein____MSMEG_6885 property:biological_process ?u }
[]
nutrient
SYSTEM
NO
(Q27743806,P682,Q14349764) (Q27743806,P682,Q133895)
action is_in
entity prev_answer
action find
entity Q27743806
relation P682
[ANSWER]
['Q27743806', 'P682', 'Q14349764'] ['Q27743806', 'P682', 'Q133895']
ASK WHERE { VALUES ( ?u ) { ( resource:Q14349764 ) ( resource:Q133895 ) } . resource:Q27743806 property:P682 ?u }
No
action is_in
entity prev_answer
action find
entity MmcI protein    MSMEG_6885
relation biological process
['MmcI protein    MSMEG_6885', 'biological process', 'oxidation-reduction process'] ['MmcI protein    MSMEG_6885', 'biological process', 'tricarboxylic acid cycle']
ASK WHERE { VALUES ( ?u ) { ( resource:oxidation-reduction_process ) ( resource:tricarboxylic_acid_cycle ) } . resource:MmcI_protein____MSMEG_6885 property:biological_process ?u }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type
Q27747405
P702
Q863908
USER
How many nucleic acid sequences are the gene that encodes Rieske (2Fe-2S) domain-containing protein    MSMEG_1459 ?
(Q27747405,P702,c(Q863908))
action count
action filter_type
action find
entity Q27747405
relation P702
type Q863908
['Q27747405', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ( COUNT ( ?o ) AS ?s ) WHERE { resource:Q27747405 property:P702 ?o . ?o rdf:type ontology:Q863908 }
Rieske (2Fe-2S) domain-containing protein    MSMEG_1459
action count
action filter_type
action find
entity Rieske (2Fe-2S) domain-containing protein    MSMEG_1459
relation encoded by
type nucleic acid sequence
['Rieske (2Fe-2S) domain-containing protein    MSMEG_1459', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ( COUNT ( ?o ) AS ?s ) WHERE { resource:Rieske_(2Fe-2S)_domain-containing_protein____MSMEG_1459 property:encoded_by ?o . ?o rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
SYSTEM
1
Q23276509
(Q27747405,P702,c(Q863908))
action count
action filter_type
action find
entity Q27747405
relation P702
type Q863908
[ANSWER]
['Q27747405', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ( COUNT ( ?o ) AS ?s ) WHERE { resource:Q27747405 property:P702 ?o . ?o rdf:type ontology:Q863908 }
Rieske (2Fe-2S) domain-containing protein    MSMEG_1459
1
action count
action filter_type
action find
entity Rieske (2Fe-2S) domain-containing protein    MSMEG_1459
relation encoded by
type nucleic acid sequence
['Rieske (2Fe-2S) domain-containing protein    MSMEG_1459', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ( COUNT ( ?o ) AS ?s ) WHERE { resource:Rieske_(2Fe-2S)_domain-containing_protein____MSMEG_1459 property:encoded_by ?o . ?o rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q24100398
Q863908
USER
And how about proteinase inhibitor    XCC0346?
(Q24100398,P702,c(Q863908))
action filter_type
action find
entity Q24100398
relation P702
type Q863908
['Q24100398', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?h WHERE { resource:Q24100398 property:P702 ?h . ?h rdf:type ontology:Q863908 }
proteinase inhibitor    XCC0346
action filter_type
action find
entity proteinase inhibitor    XCC0346
relation encoded by
type nucleic acid sequence
['proteinase inhibitor    XCC0346', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?h WHERE { resource:proteinase_inhibitor____XCC0346 property:encoded_by ?h . ?h rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23162665
SYSTEM
proteinase inhibitor    XCC0346
Q23162665
(Q24100398,P702,c(Q863908))
action filter_type
action find
entity Q24100398
relation P702
type Q863908
[ANSWER]
['Q24100398', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?h WHERE { resource:Q24100398 property:P702 ?h . ?h rdf:type ontology:Q863908 }
proteinase inhibitor    XCC0346
proteinase inhibitor    XCC0346
action filter_type
action find
entity proteinase inhibitor    XCC0346
relation encoded by
type nucleic acid sequence
['proteinase inhibitor    XCC0346', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?h WHERE { resource:proteinase_inhibitor____XCC0346 property:encoded_by ?h . ?h rdf:type ontology:nucleic_acid_sequence }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23178959 Q23162665
P703
Q631147
USER
Which infraspecific names are the taxon to which proteinase inhibitor    XCC0346 or PTS system fructose/mannitol transporter subunit IIC    HMPREF0351_10629 belongs to ?
OR((Q23162665,P703,c(Q631147)), (Q23178959,P703,c(Q631147)))
action filter_type
action union
action find
entity Q23162665
relation P703
action find
entity Q23178959
relation P703
type Q631147
{'OR': [['Q23162665', 'P703', {'concept': 'Q631147'}], ['Q23178959', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?u WHERE { { { resource:Q23162665 property:P703 ?u } UNION { resource:Q23178959 property:P703 ?u } } . ?u rdf:type ontology:Q631147 }
PTS system fructose/mannitol transporter subunit IIC    HMPREF0351_10629 proteinase inhibitor    XCC0346
action filter_type
action union
action find
entity proteinase inhibitor    XCC0346
relation found in taxon
action find
entity PTS system fructose/mannitol transporter subunit IIC    HMPREF0351_10629
relation found in taxon
type infraspecific name
{'OR': [['proteinase inhibitor    XCC0346', 'found in taxon', {'concept': 'infraspecific name'}], ['PTS system fructose/mannitol transporter subunit IIC    HMPREF0351_10629', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?u WHERE { { { resource:proteinase_inhibitor____XCC0346 property:found_in_taxon ?u } UNION { resource:PTS_system_fructose/mannitol_transporter_subunit_IIC____HMPREF0351_10629 property:found_in_taxon ?u } } . ?u rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21079491 Q21102966
SYSTEM
Xanthomonas campestris pv. campestris str. ATCC 33913, Enterococcus faecium DO
Q21079491 Q21102966
OR((Q23162665,P703,c(Q631147)), (Q23178959,P703,c(Q631147)))
action filter_type
action union
action find
entity Q23162665
relation P703
action find
entity Q23178959
relation P703
type Q631147
[ANSWERS] are the taxon to which proteinase inhibitor XCC0346 or PTS system fructose/mannitol transporter subunit IIC HMPREF0351_10629 belongs to
{'OR': [['Q23162665', 'P703', {'concept': 'Q631147'}], ['Q23178959', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?u WHERE { { { resource:Q23162665 property:P703 ?u } UNION { resource:Q23178959 property:P703 ?u } } . ?u rdf:type ontology:Q631147 }
Xanthomonas campestris pv. campestris str. ATCC 33913 Enterococcus faecium DO
Xanthomonas campestris pv. campestris str. ATCC 33913 and Enterococcus faecium DO are the taxon to which proteinase inhibitor XCC0346 or PTS system fructose/mannitol transporter subunit IIC HMPREF0351_10629 belongs to
Xanthomonas campestris pv. campestris str. ATCC 33913 Enterococcus faecium DO
action filter_type
action union
action find
entity proteinase inhibitor    XCC0346
relation found in taxon
action find
entity PTS system fructose/mannitol transporter subunit IIC    HMPREF0351_10629
relation found in taxon
type infraspecific name
{'OR': [['proteinase inhibitor    XCC0346', 'found in taxon', {'concept': 'infraspecific name'}], ['PTS system fructose/mannitol transporter subunit IIC    HMPREF0351_10629', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?u WHERE { { { resource:proteinase_inhibitor____XCC0346 property:found_in_taxon ?u } UNION { resource:PTS_system_fructose/mannitol_transporter_subunit_IIC____HMPREF0351_10629 property:found_in_taxon ?u } } . ?u rdf:type ontology:infraspecific_name }
[]