Simple Question (Direct)
Simple Question
Q21498608
P702
Q863908
USER
Which nucleic acid sequence encodes Insulin-like growth factor-binding protein 1 ?
(Q21498608,P702,c(Q863908))
action filter_type
action find
entity Q21498608
relation P702
type Q863908
['Q21498608', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:Q863908 . resource:Q21498608 property:P702 ?m }
Insulin-like growth factor-binding protein 1
action filter_type
action find
entity Insulin-like growth factor-binding protein 1
relation encoded by
type nucleic acid sequence
['Insulin-like growth factor-binding protein 1', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:nucleic_acid_sequence . resource:Insulin-like_growth_factor-binding_protein_1 property:encoded_by ?m }
[]
nucleic acid sequence
Q18251446
SYSTEM
Igfbp1
Q18251446
(Q21498608,P702,c(Q863908))
action filter_type
action find
entity Q21498608
relation P702
type Q863908
[ANSWER] encodes Insulin-like growth factor-binding protein 1
['Q21498608', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:Q863908 . resource:Q21498608 property:P702 ?m }
Igfbp1
Igfbp1 encodes Insulin-like growth factor-binding protein 1
Igfbp1
action filter_type
action find
entity Insulin-like growth factor-binding protein 1
relation encoded by
type nucleic acid sequence
['Insulin-like growth factor-binding protein 1', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:nucleic_acid_sequence . resource:Insulin-like_growth_factor-binding_protein_1 property:encoded_by ?m }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18251446
P684
Q863908
USER
Which nucleic acid sequence is an orthologous gene for that one ?
(Q18251446,P684,c(Q863908))
action filter_type
action find
entity Q18251446
relation P684
type Q863908
['Q18251446', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:Q863908 . resource:Q18251446 property:P684 ?b }
Igfbp1
action filter_type
action find
entity Igfbp1
relation ortholog
type nucleic acid sequence
['Igfbp1', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:nucleic_acid_sequence . resource:Igfbp1 property:ortholog ?b }
[]
nucleic acid sequence
Q18027673
SYSTEM
IGFBP1
Q18027673
(Q18251446,P684,c(Q863908))
action filter_type
action find
entity Q18251446
relation P684
type Q863908
[ANSWER] is an orthologous gene for that one
['Q18251446', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:Q863908 . resource:Q18251446 property:P684 ?b }
IGFBP1
IGFBP1 is an orthologous gene for that one
IGFBP1
action filter_type
action find
entity Igfbp1
relation ortholog
type nucleic acid sequence
['Igfbp1', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:nucleic_acid_sequence . resource:Igfbp1 property:ortholog ?b }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q18048944
Q863908
USER
And also tell me about WBSCR22?
(Q18048944,P684,c(Q863908))
action filter_type
action find
entity Q18048944
relation P684
type Q863908
['Q18048944', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?e WHERE { resource:Q18048944 property:P684 ?e . ?e rdf:type ontology:Q863908 }
WBSCR22
action filter_type
action find
entity WBSCR22
relation ortholog
type nucleic acid sequence
['WBSCR22', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?e WHERE { resource:WBSCR22 property:ortholog ?e . ?e rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18261605
SYSTEM
Wbscr22
Q18261605
(Q18048944,P684,c(Q863908))
action filter_type
action find
entity Q18048944
relation P684
type Q863908
[ANSWER]
['Q18048944', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?e WHERE { resource:Q18048944 property:P684 ?e . ?e rdf:type ontology:Q863908 }
Wbscr22
Wbscr22
action filter_type
action find
entity WBSCR22
relation ortholog
type nucleic acid sequence
['WBSCR22', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?e WHERE { resource:WBSCR22 property:ortholog ?e . ?e rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q18261605 Q21991579
P688
Q181394
USER
Is Wbscr22 an encoding of Probable 18S rRNA (guanine-N(7))-methyltransferase ?
(Q18261605,P688,Q21991579)
action is_in
entity Q21991579
action find
entity Q18261605
relation P688
['Q18261605', 'P688', 'Q21991579']
ASK WHERE { resource:Q18261605 property:P688 resource:Q21991579 }
Wbscr22 Probable 18S rRNA (guanine-N(7))-methyltransferase
action is_in
entity Probable 18S rRNA (guanine-N(7))-methyltransferase
action find
entity Wbscr22
relation encodes
['Wbscr22', 'encodes', 'Probable 18S rRNA (guanine-N(7))-methyltransferase']
ASK WHERE { resource:Wbscr22 property:encodes resource:Probable_18S_rRNA_(guanine-N(7))-methyltransferase }
[]
nutrient
SYSTEM
YES
(Q18261605,P688,Q21991579)
action is_in
entity Q21991579
action find
entity Q18261605
relation P688
[ANSWER]
['Q18261605', 'P688', 'Q21991579']
ASK WHERE { resource:Q18261605 property:P688 resource:Q21991579 }
Yes
action is_in
entity Probable 18S rRNA (guanine-N(7))-methyltransferase
action find
entity Wbscr22
relation encodes
['Wbscr22', 'encodes', 'Probable 18S rRNA (guanine-N(7))-methyltransferase']
ASK WHERE { resource:Wbscr22 property:encodes resource:Probable_18S_rRNA_(guanine-N(7))-methyltransferase }
[]
Verification (Boolean) (All)
Verification|3 entities, all direct, 2 are query entities
Q18251446 Q21498608 Q22336554
P688
Q181394
USER
Does Igfbp1 encode Insulin-like growth factor-binding protein 1 and oxidoreductase dehydrogenase, short chain    lpg0832 ?
(Q18251446,P688,Q21498608) (Q18251446,P688,Q22336554)
action is_in
entity Q18251446
action intersection
action find_reverse
entity Q21498608
relation P688
action find_reverse
entity Q22336554
relation P688
['Q18251446', 'P688', 'Q21498608'] ['Q18251446', 'P688', 'Q22336554']
ASK WHERE { resource:Q18251446 property:P688 resource:Q21498608 . resource:Q18251446 property:P688 resource:Q22336554 }
Igfbp1 Insulin-like growth factor-binding protein 1 oxidoreductase dehydrogenase, short chain    lpg0832
action is_in
entity Igfbp1
action intersection
action find_reverse
entity Insulin-like growth factor-binding protein 1
relation encodes
action find_reverse
entity oxidoreductase dehydrogenase, short chain    lpg0832
relation encodes
['Igfbp1', 'encodes', 'Insulin-like growth factor-binding protein 1'] ['Igfbp1', 'encodes', 'oxidoreductase dehydrogenase, short chain    lpg0832']
ASK WHERE { resource:Igfbp1 property:encodes resource:Insulin-like_growth_factor-binding_protein_1 . resource:Igfbp1 property:encodes resource:oxidoreductase_dehydrogenase,_short_chain____lpg0832 }
[]
nutrient
SYSTEM
YES and NO respectively
(Q18251446,P688,Q21498608) (Q18251446,P688,Q22336554)
action is_in
entity Q18251446
action intersection
action find_reverse
entity Q21498608
relation P688
action find_reverse
entity Q22336554
relation P688
[ANSWER]
['Q18251446', 'P688', 'Q21498608'] ['Q18251446', 'P688', 'Q22336554']
ASK WHERE { resource:Q18251446 property:P688 resource:Q21498608 . resource:Q18251446 property:P688 resource:Q22336554 }
YES and NO respectively
action is_in
entity Igfbp1
action intersection
action find_reverse
entity Insulin-like growth factor-binding protein 1
relation encodes
action find_reverse
entity oxidoreductase dehydrogenase, short chain    lpg0832
relation encodes
['Igfbp1', 'encodes', 'Insulin-like growth factor-binding protein 1'] ['Igfbp1', 'encodes', 'oxidoreductase dehydrogenase, short chain    lpg0832']
ASK WHERE { resource:Igfbp1 property:encodes resource:Insulin-like_growth_factor-binding_protein_1 . resource:Igfbp1 property:encodes resource:oxidoreductase_dehydrogenase,_short_chain____lpg0832 }
[]
Verification (Boolean) (All)
Verification|3 entities, all direct, 2 are query entities
Q18027673 Q27744426 Q23539702
P688
Q181394
USER
Does IGFBP1 encode ABC transporter    MSMEG_1709 and bifunctional protein: transcription regulator; PTS system, mannitol(cryptic)-specific EIIA component    lp_3543 ?
(Q18027673,P688,Q27744426) (Q18027673,P688,Q23539702)
action is_in
entity Q18027673
action intersection
action find_reverse
entity Q27744426
relation P688
action find_reverse
entity Q23539702
relation P688
['Q18027673', 'P688', 'Q27744426'] ['Q18027673', 'P688', 'Q23539702']
ASK WHERE { resource:Q18027673 property:P688 resource:Q27744426 . resource:Q18027673 property:P688 resource:Q23539702 }
IGFBP1 ABC transporter    MSMEG_1709 bifunctional protein: transcription regulator; PTS system, mannitol(cryptic)-specific EIIA component    lp_3543
action is_in
entity IGFBP1
action intersection
action find_reverse
entity ABC transporter    MSMEG_1709
relation encodes
action find_reverse
entity bifunctional protein: transcription regulator; PTS system, mannitol(cryptic)-specific EIIA component    lp_3543
relation encodes
['IGFBP1', 'encodes', 'ABC transporter    MSMEG_1709'] ['IGFBP1', 'encodes', 'bifunctional protein: transcription regulator; PTS system, mannitol(cryptic)-specific EIIA component    lp_3543']
ASK WHERE { resource:IGFBP1 property:encodes resource:ABC_transporter____MSMEG_1709 . resource:IGFBP1 property:encodes resource:bifunctional_protein:_transcription_regulator;_PTS_system,_mannitol(cryptic)-specific_EIIA_component____lp_3543 }
[]
nutrient
SYSTEM
NO
(Q18027673,P688,Q27744426) (Q18027673,P688,Q23539702)
action is_in
entity Q18027673
action intersection
action find_reverse
entity Q27744426
relation P688
action find_reverse
entity Q23539702
relation P688
[ANSWER]
['Q18027673', 'P688', 'Q27744426'] ['Q18027673', 'P688', 'Q23539702']
ASK WHERE { resource:Q18027673 property:P688 resource:Q27744426 . resource:Q18027673 property:P688 resource:Q23539702 }
No
action is_in
entity IGFBP1
action intersection
action find_reverse
entity ABC transporter    MSMEG_1709
relation encodes
action find_reverse
entity bifunctional protein: transcription regulator; PTS system, mannitol(cryptic)-specific EIIA component    lp_3543
relation encodes
['IGFBP1', 'encodes', 'ABC transporter    MSMEG_1709'] ['IGFBP1', 'encodes', 'bifunctional protein: transcription regulator; PTS system, mannitol(cryptic)-specific EIIA component    lp_3543']
ASK WHERE { resource:IGFBP1 property:encodes resource:ABC_transporter____MSMEG_1709 . resource:IGFBP1 property:encodes resource:bifunctional_protein:_transcription_regulator;_PTS_system,_mannitol(cryptic)-specific_EIIA_component____lp_3543 }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23165604 Q18251446
P688
Q181394
USER
Which nutrients do Igfbp1 or hypothetical protein    VP0401 encode ?
OR((Q18251446,P688,c(Q181394)), (Q23165604,P688,c(Q181394)))
action filter_type
action union
action find
entity Q18251446
relation P688
action find
entity Q23165604
relation P688
type Q181394
{'OR': [['Q18251446', 'P688', {'concept': 'Q181394'}], ['Q23165604', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?q WHERE { ?q rdf:type ontology:Q181394 . { { resource:Q18251446 property:P688 ?q } UNION { resource:Q23165604 property:P688 ?q } } }
hypothetical protein    VP0401 Igfbp1
action filter_type
action union
action find
entity Igfbp1
relation encodes
action find
entity hypothetical protein    VP0401
relation encodes
type nutrient
{'OR': [['Igfbp1', 'encodes', {'concept': 'nutrient'}], ['hypothetical protein    VP0401', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?q WHERE { ?q rdf:type ontology:nutrient . { { resource:Igfbp1 property:encodes ?q } UNION { resource:hypothetical_protein____VP0401 property:encodes ?q } } }
[]
nutrient
Q21498608 Q23444340
SYSTEM
Insulin-like growth factor-binding protein 1, hypothetical protein    VP0401
Q21498608 Q23444340
OR((Q18251446,P688,c(Q181394)), (Q23165604,P688,c(Q181394)))
action filter_type
action union
action find
entity Q18251446
relation P688
action find
entity Q23165604
relation P688
type Q181394
[ANSWERS]
{'OR': [['Q18251446', 'P688', {'concept': 'Q181394'}], ['Q23165604', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?q WHERE { ?q rdf:type ontology:Q181394 . { { resource:Q18251446 property:P688 ?q } UNION { resource:Q23165604 property:P688 ?q } } }
Insulin-like growth factor-binding protein 1 hypothetical protein    VP0401
Insulin-like growth factor-binding protein 1 and hypothetical protein VP0401 Igfbp1 or hypothetical protein VP0401 encode
Insulin-like growth factor-binding protein 1 hypothetical protein    VP0401
action filter_type
action union
action find
entity Igfbp1
relation encodes
action find
entity hypothetical protein    VP0401
relation encodes
type nutrient
{'OR': [['Igfbp1', 'encodes', {'concept': 'nutrient'}], ['hypothetical protein    VP0401', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?q WHERE { ?q rdf:type ontology:nutrient . { { resource:Igfbp1 property:encodes ?q } UNION { resource:hypothetical_protein____VP0401 property:encodes ?q } } }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23154362 Q18048944
P702
Q181394
USER
Which nutrients are encoded by WBSCR22 or transcription elongation factor GreB    Psyr_2065 ?
OR((c(Q181394),P702,Q18048944), (c(Q181394),P702,Q23154362))
action filter_type
action union
action find_reverse
entity Q18048944
relation P702
action find_reverse
entity Q23154362
relation P702
type Q181394
{'OR': [[{'concept': 'Q181394'}, 'P702', 'Q18048944'], [{'concept': 'Q181394'}, 'P702', 'Q23154362']]}
SELECT DISTINCT ?j WHERE { { ?j property:P702 ?m . VALUES ( ?m ) { ( resource:Q18048944 ) ( resource:Q23154362 ) } } . ?j rdf:type ontology:Q181394 }
transcription elongation factor GreB    Psyr_2065 WBSCR22
action filter_type
action union
action find_reverse
entity WBSCR22
relation encoded by
action find_reverse
entity transcription elongation factor GreB    Psyr_2065
relation encoded by
type nutrient
{'OR': [[{'concept': 'nutrient'}, 'encoded by', 'WBSCR22'], [{'concept': 'nutrient'}, 'encoded by', 'transcription elongation factor GreB    Psyr_2065']]}
SELECT DISTINCT ?j WHERE { { ?j property:encoded_by ?m . VALUES ( ?m ) { ( resource:WBSCR22 ) ( resource:transcription_elongation_factor_GreB____Psyr_2065 ) } } . ?j rdf:type ontology:nutrient }
[]
nutrient
Q24096713 Q21122946
SYSTEM
transcription elongation factor GreB    Psyr_2065, Probable 18S rRNA (guanine-N(7))-methyltransferase
Q24096713 Q21122946
OR((c(Q181394),P702,Q18048944), (c(Q181394),P702,Q23154362))
action filter_type
action union
action find_reverse
entity Q18048944
relation P702
action find_reverse
entity Q23154362
relation P702
type Q181394
[ANSWERS]
{'OR': [[{'concept': 'Q181394'}, 'P702', 'Q18048944'], [{'concept': 'Q181394'}, 'P702', 'Q23154362']]}
SELECT DISTINCT ?j WHERE { { ?j property:P702 ?m . VALUES ( ?m ) { ( resource:Q18048944 ) ( resource:Q23154362 ) } } . ?j rdf:type ontology:Q181394 }
transcription elongation factor GreB    Psyr_2065 Probable 18S rRNA (guanine-N(7))-methyltransferase
Transcription elongation factor GreB Psyr 2065 and Probable 18S rRNA (guanine-N(7))-methyltransferase are encoded by WBSCR22 or transcription elongation factor GreB Psyr_2065
transcription elongation factor GreB    Psyr_2065 Probable 18S rRNA (guanine-N(7))-methyltransferase
action filter_type
action union
action find_reverse
entity WBSCR22
relation encoded by
action find_reverse
entity transcription elongation factor GreB    Psyr_2065
relation encoded by
type nutrient
{'OR': [[{'concept': 'nutrient'}, 'encoded by', 'WBSCR22'], [{'concept': 'nutrient'}, 'encoded by', 'transcription elongation factor GreB    Psyr_2065']]}
SELECT DISTINCT ?j WHERE { { ?j property:encoded_by ?m . VALUES ( ?m ) { ( resource:WBSCR22 ) ( resource:transcription_elongation_factor_GreB____Psyr_2065 ) } } . ?j rdf:type ontology:nutrient }
[]