Simple Question (Direct)
Simple Question
Q24096628
P681
Q5058355
USER
What is a component of PAS:ATP-binding region, ATPase-like:histidine kinase A, N-terminal    Psyr_5033 ?
(Q24096628,P681,c(Q5058355))
action filter_type
action find
entity Q24096628
relation P681
type Q5058355
['Q24096628', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?v WHERE { resource:Q24096628 property:P681 ?v . ?v rdf:type ontology:Q5058355 }
PAS:ATP-binding region, ATPase-like:histidine kinase A, N-terminal    Psyr_5033
action filter_type
action find
entity PAS:ATP-binding region, ATPase-like:histidine kinase A, N-terminal    Psyr_5033
relation cell component
type cellular component
['PAS:ATP-binding region, ATPase-like:histidine kinase A, N-terminal    Psyr_5033', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?v WHERE { resource:PAS:ATP-binding_region,_ATPase-like:histidine_kinase_A,_N-terminal____Psyr_5033 property:cell_component ?v . ?v rdf:type ontology:cellular_component }
[]
cellular component
Q3824358
SYSTEM
intracellular
Q3824358
(Q24096628,P681,c(Q5058355))
action filter_type
action find
entity Q24096628
relation P681
type Q5058355
A component of PAS : ATP-binding region , ATPase-like : histidine kinase A , N-terminal Psyr_5033 is an [ANSWER]
['Q24096628', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?v WHERE { resource:Q24096628 property:P681 ?v . ?v rdf:type ontology:Q5058355 }
intracellular
A component of PAS : ATP-binding region , ATPase-like : histidine kinase A , N-terminal Psyr_5033 is an intracellular
intracellular
action filter_type
action find
entity PAS:ATP-binding region, ATPase-like:histidine kinase A, N-terminal    Psyr_5033
relation cell component
type cellular component
['PAS:ATP-binding region, ATPase-like:histidine kinase A, N-terminal    Psyr_5033', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?v WHERE { resource:PAS:ATP-binding_region,_ATPase-like:histidine_kinase_A,_N-terminal____Psyr_5033 property:cell_component ?v . ?v rdf:type ontology:cellular_component }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q24096628
P688
Q863908
USER
Which nucleic acid sequence encodes PAS:ATP-binding region, ATPase-like:histidine kinase A, N-terminal    Psyr_5033 ?
(c(Q863908),P688,Q24096628)
action filter_type
action find_reverse
entity Q24096628
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q24096628']
SELECT DISTINCT ?e WHERE { ?e rdf:type ontology:Q863908 . ?e property:P688 resource:Q24096628 }
PAS:ATP-binding region, ATPase-like:histidine kinase A, N-terminal    Psyr_5033
action filter_type
action find_reverse
entity PAS:ATP-binding region, ATPase-like:histidine kinase A, N-terminal    Psyr_5033
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'PAS:ATP-binding region, ATPase-like:histidine kinase A, N-terminal    Psyr_5033']
SELECT DISTINCT ?e WHERE { ?e rdf:type ontology:nucleic_acid_sequence . ?e property:encodes resource:PAS:ATP-binding_region,_ATPase-like:histidine_kinase_A,_N-terminal____Psyr_5033 }
[]
nucleic acid sequence
Q23154268
SYSTEM
PAS:ATP-binding region, ATPase-like:histidine kinase A, N-terminal    Psyr_5033
Q23154268
(c(Q863908),P688,Q24096628)
action filter_type
action find_reverse
entity Q24096628
relation P688
type Q863908
PAS:ATP-binding region, ATPase-like:histidine kinase A, N-terminal Psyr 5033 encodes PAS:ATP-binding region, ATPase-like:histidine kinase A, N-terminal Psyr_5033
[{'concept': 'Q863908'}, 'P688', 'Q24096628']
SELECT DISTINCT ?e WHERE { ?e rdf:type ontology:Q863908 . ?e property:P688 resource:Q24096628 }
PAS:ATP-binding region, ATPase-like:histidine kinase A, N-terminal    Psyr_5033
PAS:ATP-binding region, ATPase-like:histidine kinase A, N-terminal Psyr 5033 encodes PAS:ATP-binding region, ATPase-like:histidine kinase A, N-terminal Psyr_5033
PAS:ATP-binding region, ATPase-like:histidine kinase A, N-terminal    Psyr_5033
action filter_type
action find_reverse
entity PAS:ATP-binding region, ATPase-like:histidine kinase A, N-terminal    Psyr_5033
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'PAS:ATP-binding region, ATPase-like:histidine kinase A, N-terminal    Psyr_5033']
SELECT DISTINCT ?e WHERE { ?e rdf:type ontology:nucleic_acid_sequence . ?e property:encodes resource:PAS:ATP-binding_region,_ATPase-like:histidine_kinase_A,_N-terminal____Psyr_5033 }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q24096628
P702
Q863908
USER
What is the gene that encodes that nutrient ?
(Q23154268,P702,c(Q863908))
action filter_type
action find
entity Q24096628
relation P702
type Q863908
['Q23154268', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?g WHERE { resource:Q24096628 property:P702 ?g . ?g rdf:type ontology:Q863908 }
PAS:ATP-binding region, ATPase-like:histidine kinase A, N-terminal    Psyr_5033
action filter_type
action find
entity PAS:ATP-binding region, ATPase-like:histidine kinase A, N-terminal    Psyr_5033
relation encoded by
type nucleic acid sequence
['PAS:ATP-binding region, ATPase-like:histidine kinase A, N-terminal    Psyr_5033', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?g WHERE { resource:PAS:ATP-binding_region,_ATPase-like:histidine_kinase_A,_N-terminal____Psyr_5033 property:encoded_by ?g . ?g rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23154268
SYSTEM
PAS:ATP-binding region, ATPase-like:histidine kinase A, N-terminal    Psyr_5033
Q23154268
(Q23154268,P702,c(Q863908))
action filter_type
action find
entity Q24096628
relation P702
type Q863908
The gene that encodes that nutrient is PAS:ATP-binding region, ATPase-like:histidine kinase A, N-terminal Psyr 5033
['Q23154268', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?g WHERE { resource:Q24096628 property:P702 ?g . ?g rdf:type ontology:Q863908 }
PAS:ATP-binding region, ATPase-like:histidine kinase A, N-terminal    Psyr_5033
The gene that encodes that nutrient is PAS:ATP-binding region, ATPase-like:histidine kinase A, N-terminal Psyr 5033
PAS:ATP-binding region, ATPase-like:histidine kinase A, N-terminal    Psyr_5033
action filter_type
action find
entity PAS:ATP-binding region, ATPase-like:histidine kinase A, N-terminal    Psyr_5033
relation encoded by
type nucleic acid sequence
['PAS:ATP-binding region, ATPase-like:histidine kinase A, N-terminal    Psyr_5033', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?g WHERE { resource:PAS:ATP-binding_region,_ATPase-like:histidine_kinase_A,_N-terminal____Psyr_5033 property:encoded_by ?g . ?g rdf:type ontology:nucleic_acid_sequence }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q181394 Q79529 Q8386
USER
How many nutrients do exactly 9 chemical substances and drugs contact with ?
(c(Q79529)|c(Q8386),P129,c(Q181394))
action count
action equal
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
value 9
[[{'concept': 'Q79529'}, {'concept': 'Q8386'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?l ) AS ?e ) WHERE { { SELECT DISTINCT ?l ( COUNT ( ?c ) AS ?y ) WHERE { VALUES ( ?v ) { ( ontology:Q8386 ) ( ontology:Q79529 ) } . ?c rdf:type ?v } GROUP BY ?l } . FILTER ( ?y = 9 ) }
action count
action equal
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
value 9
[[{'concept': 'chemical substance'}, {'concept': 'drug'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?l ) AS ?e ) WHERE { { SELECT DISTINCT ?l ( COUNT ( ?c ) AS ?y ) WHERE { VALUES ( ?v ) { ( ontology:drug ) ( ontology:chemical_substance ) } . ?c rdf:type ?v } GROUP BY ?l } . FILTER ( ?y = 9 ) }
[]
nutrient chemical substance drug
SYSTEM
10
Q21108624 Q7671479 Q5401858 Q21173381 Q21118353 Q311568 Q5009781 Q21201294 Q7671477 Q15324415
(c(Q79529)|c(Q8386),P129,c(Q181394))
action count
action equal
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
value 9
[ANSWER]
[[{'concept': 'Q79529'}, {'concept': 'Q8386'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?l ) AS ?e ) WHERE { { SELECT DISTINCT ?l ( COUNT ( ?c ) AS ?y ) WHERE { VALUES ( ?v ) { ( ontology:Q8386 ) ( ontology:Q79529 ) } . ?c rdf:type ?v } GROUP BY ?l } . FILTER ( ?y = 9 ) }
Platelet-derived growth factor receptor beta Transient receptor potential cation channel subfamily M member 3 Estrogen receptor Histone deacetylase 6 Vascular endothelial growth factor receptor 3 Histamine H2 receptor Receptor-type tyrosine-protein kinase FLT3 Cannabinoid receptor 1 Transient receptor potential cation channel subfamily M member 2 Transient receptor potential cation channel subfamily M member 8
10
action count
action equal
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
value 9
[[{'concept': 'chemical substance'}, {'concept': 'drug'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?l ) AS ?e ) WHERE { { SELECT DISTINCT ?l ( COUNT ( ?c ) AS ?y ) WHERE { VALUES ( ?v ) { ( ontology:drug ) ( ontology:chemical_substance ) } . ?c rdf:type ?v } GROUP BY ?l } . FILTER ( ?y = 9 ) }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23154268
P703
Q631147
USER
What is the taxon to which PAS:ATP-binding region, ATPase-like:histidine kinase A, N-terminal    Psyr_5033 belongs to ?
(Q23154268,P703,c(Q631147))
action filter_type
action find
entity Q23154268
relation P703
type Q631147
['Q23154268', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?o WHERE { ?o rdf:type ontology:Q631147 . resource:Q23154268 property:P703 ?o }
PAS:ATP-binding region, ATPase-like:histidine kinase A, N-terminal    Psyr_5033
action filter_type
action find
entity PAS:ATP-binding region, ATPase-like:histidine kinase A, N-terminal    Psyr_5033
relation found in taxon
type infraspecific name
['PAS:ATP-binding region, ATPase-like:histidine kinase A, N-terminal    Psyr_5033', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?o WHERE { ?o rdf:type ontology:infraspecific_name . resource:PAS:ATP-binding_region,_ATPase-like:histidine_kinase_A,_N-terminal____Psyr_5033 property:found_in_taxon ?o }
[]
infraspecific name
Q21079490
SYSTEM
Pseudomonas syringae pv. syringae B728a
Q21079490
(Q23154268,P703,c(Q631147))
action filter_type
action find
entity Q23154268
relation P703
type Q631147
[ANSWER]
['Q23154268', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?o WHERE { ?o rdf:type ontology:Q631147 . resource:Q23154268 property:P703 ?o }
Pseudomonas syringae pv. syringae B728a
Pseudomonas syringae pv. syringae B728a
Pseudomonas syringae pv. syringae B728a
action filter_type
action find
entity PAS:ATP-binding region, ATPase-like:histidine kinase A, N-terminal    Psyr_5033
relation found in taxon
type infraspecific name
['PAS:ATP-binding region, ATPase-like:histidine kinase A, N-terminal    Psyr_5033', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?o WHERE { ?o rdf:type ontology:infraspecific_name . resource:PAS:ATP-binding_region,_ATPase-like:histidine_kinase_A,_N-terminal____Psyr_5033 property:found_in_taxon ?o }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation|Incomplete
Q27109210 Q23154268
P703
Q631147
USER
Or hypothetical protein    PP_5484?
OR((Q23154268,P703,c(Q631147)), (Q27109210,P703,c(Q631147)))
action filter_type
action union
action find
entity Q23154268
relation P703
action find
entity Q27109210
relation P703
type Q631147
{'OR': [['Q23154268', 'P703', {'concept': 'Q631147'}], ['Q27109210', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?y WHERE { { VALUES ( ?m ) { ( resource:Q23154268 ) ( resource:Q27109210 ) } . ?m property:P703 ?y } . ?y rdf:type ontology:Q631147 }
hypothetical protein    PP_5484 PAS:ATP-binding region, ATPase-like:histidine kinase A, N-terminal    Psyr_5033
action filter_type
action union
action find
entity PAS:ATP-binding region, ATPase-like:histidine kinase A, N-terminal    Psyr_5033
relation found in taxon
action find
entity hypothetical protein    PP_5484
relation found in taxon
type infraspecific name
{'OR': [['PAS:ATP-binding region, ATPase-like:histidine kinase A, N-terminal    Psyr_5033', 'found in taxon', {'concept': 'infraspecific name'}], ['hypothetical protein    PP_5484', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?y WHERE { { VALUES ( ?m ) { ( resource:PAS:ATP-binding_region,_ATPase-like:histidine_kinase_A,_N-terminal____Psyr_5033 ) ( resource:hypothetical_protein____PP_5484 ) } . ?m property:found_in_taxon ?y } . ?y rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21079490 Q21079489
SYSTEM
Pseudomonas syringae pv. syringae B728a, Pseudomonas putida KT2440
Q21079490 Q21079489
OR((Q23154268,P703,c(Q631147)), (Q27109210,P703,c(Q631147)))
action filter_type
action union
action find
entity Q23154268
relation P703
action find
entity Q27109210
relation P703
type Q631147
[ANSWERS]
{'OR': [['Q23154268', 'P703', {'concept': 'Q631147'}], ['Q27109210', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?y WHERE { { VALUES ( ?m ) { ( resource:Q23154268 ) ( resource:Q27109210 ) } . ?m property:P703 ?y } . ?y rdf:type ontology:Q631147 }
Pseudomonas syringae pv. syringae B728a Pseudomonas putida KT2440
Pseudomonas syringae pv. syringae B728a Pseudomonas putida KT2440
action filter_type
action union
action find
entity PAS:ATP-binding region, ATPase-like:histidine kinase A, N-terminal    Psyr_5033
relation found in taxon
action find
entity hypothetical protein    PP_5484
relation found in taxon
type infraspecific name
{'OR': [['PAS:ATP-binding region, ATPase-like:histidine kinase A, N-terminal    Psyr_5033', 'found in taxon', {'concept': 'infraspecific name'}], ['hypothetical protein    PP_5484', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?y WHERE { { VALUES ( ?m ) { ( resource:PAS:ATP-binding_region,_ATPase-like:histidine_kinase_A,_N-terminal____Psyr_5033 ) ( resource:hypothetical_protein____PP_5484 ) } . ?m property:found_in_taxon ?y } . ?y rdf:type ontology:infraspecific_name }
[]