Simple Question (Direct)
Simple Question
Q21498456
P703
Q16521
USER
Where is Pre-mRNA-splicing regulator WTAP found ?
(Q21498456,P703,c(Q16521))
action filter_type
action find
entity Q21498456
relation P703
type Q16521
['Q21498456', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?a WHERE { ?a rdf:type ontology:Q16521 . resource:Q21498456 property:P703 ?a }
Pre-mRNA-splicing regulator WTAP
action filter_type
action find
entity Pre-mRNA-splicing regulator WTAP
relation found in taxon
type taxon
['Pre-mRNA-splicing regulator WTAP', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?a WHERE { ?a rdf:type ontology:taxon . resource:Pre-mRNA-splicing_regulator_WTAP property:found_in_taxon ?a }
[]
taxon
Q83310
SYSTEM
Mus musculus
Q83310
(Q21498456,P703,c(Q16521))
action filter_type
action find
entity Q21498456
relation P703
type Q16521
Pre-mRNA-splicing regulator WTAP is found in [ANSWER]
['Q21498456', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?a WHERE { ?a rdf:type ontology:Q16521 . resource:Q21498456 property:P703 ?a }
Mus musculus
Pre-mRNA-splicing regulator WTAP is found in Mus musculus
Mus musculus
action filter_type
action find
entity Pre-mRNA-splicing regulator WTAP
relation found in taxon
type taxon
['Pre-mRNA-splicing regulator WTAP', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?a WHERE { ?a rdf:type ontology:taxon . resource:Pre-mRNA-splicing_regulator_WTAP property:found_in_taxon ?a }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21498456
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(c(Q863908),P688,Q83310)
action filter_type
action find_reverse
entity Q21498456
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q83310']
SELECT DISTINCT ?a WHERE { ?a property:P688 resource:Q21498456 . ?a rdf:type ontology:Q863908 }
Pre-mRNA-splicing regulator WTAP
action filter_type
action find_reverse
entity Pre-mRNA-splicing regulator WTAP
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Mus musculus']
SELECT DISTINCT ?a WHERE { ?a property:encodes resource:Pre-mRNA-splicing_regulator_WTAP . ?a rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18259018
SYSTEM
Wtap
Q18259018
(c(Q863908),P688,Q83310)
action filter_type
action find_reverse
entity Q21498456
relation P688
type Q863908
[ANSWER] encodes that nutrient
[{'concept': 'Q863908'}, 'P688', 'Q83310']
SELECT DISTINCT ?a WHERE { ?a property:P688 resource:Q21498456 . ?a rdf:type ontology:Q863908 }
Wtap
Wtap encodes that nutrient
Wtap
action filter_type
action find_reverse
entity Pre-mRNA-splicing regulator WTAP
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Mus musculus']
SELECT DISTINCT ?a WHERE { ?a property:encodes resource:Pre-mRNA-splicing_regulator_WTAP . ?a rdf:type ontology:nucleic_acid_sequence }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q24281709 Q21498456
P702
Q863908
USER
Which nucleic acid sequences genes encode Pre-mRNA-splicing regulator WTAP or hypothetical protein    O3K_01415 ?
OR((Q21498456,P702,c(Q863908)), (Q24281709,P702,c(Q863908)))
action filter_type
action union
action find
entity Q21498456
relation P702
action find
entity Q24281709
relation P702
type Q863908
{'OR': [['Q21498456', 'P702', {'concept': 'Q863908'}], ['Q24281709', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?h WHERE { { ?y property:P702 ?h . VALUES ( ?y ) { ( resource:Q21498456 ) ( resource:Q24281709 ) } } . ?h rdf:type ontology:Q863908 }
hypothetical protein    O3K_01415 Pre-mRNA-splicing regulator WTAP
action filter_type
action union
action find
entity Pre-mRNA-splicing regulator WTAP
relation encoded by
action find
entity hypothetical protein    O3K_01415
relation encoded by
type nucleic acid sequence
{'OR': [['Pre-mRNA-splicing regulator WTAP', 'encoded by', {'concept': 'nucleic acid sequence'}], ['hypothetical protein    O3K_01415', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?h WHERE { { ?y property:encoded_by ?h . VALUES ( ?y ) { ( resource:Pre-mRNA-splicing_regulator_WTAP ) ( resource:hypothetical_protein____O3K_01415 ) } } . ?h rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23118696 Q18259018
SYSTEM
hypothetical protein    O3K_01415, Wtap
Q23118696 Q18259018
OR((Q21498456,P702,c(Q863908)), (Q24281709,P702,c(Q863908)))
action filter_type
action union
action find
entity Q21498456
relation P702
action find
entity Q24281709
relation P702
type Q863908
[ANSWERS]
{'OR': [['Q21498456', 'P702', {'concept': 'Q863908'}], ['Q24281709', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?h WHERE { { ?y property:P702 ?h . VALUES ( ?y ) { ( resource:Q21498456 ) ( resource:Q24281709 ) } } . ?h rdf:type ontology:Q863908 }
hypothetical protein    O3K_01415 Wtap
Hypothetical protein O3K 01415 and Wtap encode Pre-mRNA-splicing regulator WTAP or hypothetical protein O3K_01415
hypothetical protein    O3K_01415 Wtap
action filter_type
action union
action find
entity Pre-mRNA-splicing regulator WTAP
relation encoded by
action find
entity hypothetical protein    O3K_01415
relation encoded by
type nucleic acid sequence
{'OR': [['Pre-mRNA-splicing regulator WTAP', 'encoded by', {'concept': 'nucleic acid sequence'}], ['hypothetical protein    O3K_01415', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?h WHERE { { ?y property:encoded_by ?h . VALUES ( ?y ) { ( resource:Pre-mRNA-splicing_regulator_WTAP ) ( resource:hypothetical_protein____O3K_01415 ) } } . ?h rdf:type ontology:nucleic_acid_sequence }
[]
Clarification
Simple Question|Single Entity|Indirect
Q18259018
P684
Q863908
USER
Which nucleic acid sequence has that one as its orthologous gene ?
(c(Q863908),P684,Q18259018)
action filter_type
action find
entity Q18259018
relation P684
type Q863908
[{'concept': 'Q863908'}, 'P684', 'Q18259018']
SELECT DISTINCT ?y WHERE { resource:Q18259018 property:P684 ?y . ?y rdf:type ontology:Q863908 }
Wtap
action filter_type
action find
entity Wtap
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'Wtap']
SELECT DISTINCT ?y WHERE { resource:Wtap property:ortholog ?y . ?y rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Clarification for simple ques.
Q18259018
SYSTEM
Did you mean Wtap ?
Q23118696 Q18259018
(c(Q863908),P684,Q23118696) (c(Q863908),P684,Q18259018)
[ANSWER]
[{'concept': 'Q863908'}, 'P684', 'Q23118696'] [{'concept': 'Q863908'}, 'P684', 'Q18259018']
SELECT DISTINCT ?y WHERE { resource:Q18259018 property:P684 ?y . ?y rdf:type ontology:Q863908 }
hypothetical protein    O3K_01415 Wtap
Did you mean Wtap ?
Wtap
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'hypothetical protein    O3K_01415'] [{'concept': 'nucleic acid sequence'}, 'ortholog', 'Wtap']
SELECT DISTINCT ?y WHERE { resource:Wtap property:ortholog ?y . ?y rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
USER
Yes
(c(Q863908),P684,Q18259018)
[{'concept': 'Q863908'}, 'P684', 'Q18259018']
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'Wtap']
[]
Q18034403
SYSTEM
WTAP
Q18034403
(c(Q863908),P684,Q18259018)
action filter_type
action find
entity Q18259018
relation P684
type Q863908
[ANSWER] has that one as its orthologous gene
[{'concept': 'Q863908'}, 'P684', 'Q18259018']
SELECT DISTINCT ?y WHERE { resource:Q18259018 property:P684 ?y . ?y rdf:type ontology:Q863908 }
WTAP
WTAP has that one as its orthologous gene
WTAP
action filter_type
action find
entity Wtap
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'Wtap']
SELECT DISTINCT ?y WHERE { resource:Wtap property:ortholog ?y . ?y rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|3 entities, 2 direct, 2(direct) are query entities, subject is indirect
Q18034403 Q21132235 Q15333021
P688
Q181394
USER
Does that nucleic acid sequence encodes Pre-mRNA-splicing regulator WTAP and Transcription factor E2F1 ?
(Q18034403,P688,Q21132235) (Q18034403,P688,Q15333021)
action is_in
entity Q18034403
action intersection
action find_reverse
entity Q21132235
relation P688
action find_reverse
entity Q15333021
relation P688
['Q18034403', 'P688', 'Q21132235'] ['Q18034403', 'P688', 'Q15333021']
ASK WHERE { resource:Q18034403 property:P688 resource:Q21132235 . resource:Q18034403 property:P688 resource:Q15333021 }
WTAP Pre-mRNA-splicing regulator WTAP Transcription factor E2F1
action is_in
entity WTAP
action intersection
action find_reverse
entity Pre-mRNA-splicing regulator WTAP
relation encodes
action find_reverse
entity Transcription factor E2F1
relation encodes
['WTAP', 'encodes', 'Pre-mRNA-splicing regulator WTAP'] ['WTAP', 'encodes', 'Transcription factor E2F1']
ASK WHERE { resource:WTAP property:encodes resource:Pre-mRNA-splicing_regulator_WTAP . resource:WTAP property:encodes resource:Transcription_factor_E2F1 }
[]
nutrient
SYSTEM
YES and NO respectively
(Q18034403,P688,Q21132235) (Q18034403,P688,Q15333021)
action is_in
entity Q18034403
action intersection
action find_reverse
entity Q21132235
relation P688
action find_reverse
entity Q15333021
relation P688
[ANSWER]
['Q18034403', 'P688', 'Q21132235'] ['Q18034403', 'P688', 'Q15333021']
ASK WHERE { resource:Q18034403 property:P688 resource:Q21132235 . resource:Q18034403 property:P688 resource:Q15333021 }
YES and NO respectively
action is_in
entity WTAP
action intersection
action find_reverse
entity Pre-mRNA-splicing regulator WTAP
relation encodes
action find_reverse
entity Transcription factor E2F1
relation encodes
['WTAP', 'encodes', 'Pre-mRNA-splicing regulator WTAP'] ['WTAP', 'encodes', 'Transcription factor E2F1']
ASK WHERE { resource:WTAP property:encodes resource:Pre-mRNA-splicing_regulator_WTAP . resource:WTAP property:encodes resource:Transcription_factor_E2F1 }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q21498456 Q23100035
P702
Q863908
USER
Is inner membrane protein    NRG857_17225 the gene that encodes Pre-mRNA-splicing regulator WTAP ?
(Q21498456,P702,Q23100035)
action is_in
entity Q23100035
action find
entity Q21498456
relation P702
['Q21498456', 'P702', 'Q23100035']
ASK WHERE { resource:Q21498456 property:P702 resource:Q23100035 }
Pre-mRNA-splicing regulator WTAP inner membrane protein    NRG857_17225
action is_in
entity inner membrane protein    NRG857_17225
action find
entity Pre-mRNA-splicing regulator WTAP
relation encoded by
['Pre-mRNA-splicing regulator WTAP', 'encoded by', 'inner membrane protein    NRG857_17225']
ASK WHERE { resource:Pre-mRNA-splicing_regulator_WTAP property:encoded_by resource:inner_membrane_protein____NRG857_17225 }
[]
nucleic acid sequence
SYSTEM
NO
(Q21498456,P702,Q23100035)
action is_in
entity Q23100035
action find
entity Q21498456
relation P702
[ANSWER]
['Q21498456', 'P702', 'Q23100035']
ASK WHERE { resource:Q21498456 property:P702 resource:Q23100035 }
No
action is_in
entity inner membrane protein    NRG857_17225
action find
entity Pre-mRNA-splicing regulator WTAP
relation encoded by
['Pre-mRNA-splicing regulator WTAP', 'encoded by', 'inner membrane protein    NRG857_17225']
ASK WHERE { resource:Pre-mRNA-splicing_regulator_WTAP property:encoded_by resource:inner_membrane_protein____NRG857_17225 }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q24136696 Q21498456
P702
Q863908
USER
Which nucleic acid sequences genes encode Pre-mRNA-splicing regulator WTAP or putative NADP(H)-dependent aldo-keto reductase    b2834 ?
OR((Q21498456,P702,c(Q863908)), (Q24136696,P702,c(Q863908)))
action filter_type
action union
action find
entity Q21498456
relation P702
action find
entity Q24136696
relation P702
type Q863908
{'OR': [['Q21498456', 'P702', {'concept': 'Q863908'}], ['Q24136696', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?z WHERE { { ?s property:P702 ?z . VALUES ( ?s ) { ( resource:Q21498456 ) ( resource:Q24136696 ) } } . ?z rdf:type ontology:Q863908 }
putative NADP(H)-dependent aldo-keto reductase    b2834 Pre-mRNA-splicing regulator WTAP
action filter_type
action union
action find
entity Pre-mRNA-splicing regulator WTAP
relation encoded by
action find
entity putative NADP(H)-dependent aldo-keto reductase    b2834
relation encoded by
type nucleic acid sequence
{'OR': [['Pre-mRNA-splicing regulator WTAP', 'encoded by', {'concept': 'nucleic acid sequence'}], ['putative NADP(H)-dependent aldo-keto reductase    b2834', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?z WHERE { { ?s property:encoded_by ?z . VALUES ( ?s ) { ( resource:Pre-mRNA-splicing_regulator_WTAP ) ( resource:putative_NADP(H)-dependent_aldo-keto_reductase____b2834 ) } } . ?z rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18259018 Q23085347
SYSTEM
Wtap, putative NADP(H)-dependent aldo-keto reductase    b2834
Q18259018 Q23085347
OR((Q21498456,P702,c(Q863908)), (Q24136696,P702,c(Q863908)))
action filter_type
action union
action find
entity Q21498456
relation P702
action find
entity Q24136696
relation P702
type Q863908
[ANSWERS]
{'OR': [['Q21498456', 'P702', {'concept': 'Q863908'}], ['Q24136696', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?z WHERE { { ?s property:P702 ?z . VALUES ( ?s ) { ( resource:Q21498456 ) ( resource:Q24136696 ) } } . ?z rdf:type ontology:Q863908 }
Wtap putative NADP(H)-dependent aldo-keto reductase    b2834
Wtap and putative NADP(H)-dependent aldo-keto reductase b2834 encode Pre-mRNA-splicing regulator WTAP or putative NADP(H)-dependent aldo-keto reductase b2834
Wtap putative NADP(H)-dependent aldo-keto reductase    b2834
action filter_type
action union
action find
entity Pre-mRNA-splicing regulator WTAP
relation encoded by
action find
entity putative NADP(H)-dependent aldo-keto reductase    b2834
relation encoded by
type nucleic acid sequence
{'OR': [['Pre-mRNA-splicing regulator WTAP', 'encoded by', {'concept': 'nucleic acid sequence'}], ['putative NADP(H)-dependent aldo-keto reductase    b2834', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?z WHERE { { ?s property:encoded_by ?z . VALUES ( ?s ) { ( resource:Pre-mRNA-splicing_regulator_WTAP ) ( resource:putative_NADP(H)-dependent_aldo-keto_reductase____b2834 ) } } . ?z rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q18034403
P684
Q863908
USER
What is an otrhologus gene for WTAP ?
(Q18034403,P684,c(Q863908))
action filter_type
action find
entity Q18034403
relation P684
type Q863908
['Q18034403', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?b WHERE { resource:Q18034403 property:P684 ?b . ?b rdf:type ontology:Q863908 }
WTAP
action filter_type
action find
entity WTAP
relation ortholog
type nucleic acid sequence
['WTAP', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?b WHERE { resource:WTAP property:ortholog ?b . ?b rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18259018
SYSTEM
Wtap
Q18259018
(Q18034403,P684,c(Q863908))
action filter_type
action find
entity Q18034403
relation P684
type Q863908
An otrhologus gene for WTAP is the [ANSWER]
['Q18034403', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?b WHERE { resource:Q18034403 property:P684 ?b . ?b rdf:type ontology:Q863908 }
Wtap
An otrhologus gene for WTAP is the Wtap
Wtap
action filter_type
action find
entity WTAP
relation ortholog
type nucleic acid sequence
['WTAP', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?b WHERE { resource:WTAP property:ortholog ?b . ?b rdf:type ontology:nucleic_acid_sequence }
[]