Simple Question (Direct)
Simple Question
Q23426255
P682
Q1057
USER
What is the metabolic process that 4-hydroxy-3-methylbut-2-enyl diphosphate reductase    YE0619 is involved in ?
(Q23426255,P682,c(Q1057))
action filter_type
action find
entity Q23426255
relation P682
type Q1057
['Q23426255', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?l WHERE { ?l rdf:type ontology:Q1057 . resource:Q23426255 property:P682 ?l }
4-hydroxy-3-methylbut-2-enyl diphosphate reductase    YE0619
action filter_type
action find
entity 4-hydroxy-3-methylbut-2-enyl diphosphate reductase    YE0619
relation biological process
type metabolic process
['4-hydroxy-3-methylbut-2-enyl diphosphate reductase    YE0619', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?l WHERE { ?l rdf:type ontology:metabolic_process . resource:4-hydroxy-3-methylbut-2-enyl_diphosphate_reductase____YE0619 property:biological_process ?l }
[]
metabolic process
Q14349764
SYSTEM
oxidation-reduction process
Q14349764
(Q23426255,P682,c(Q1057))
action filter_type
action find
entity Q23426255
relation P682
type Q1057
The metabolic process that 4-hydroxy-3-methylbut -2 -enyl diphosphate reductase YE0619 is involved in is h [ANSWER]
['Q23426255', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?l WHERE { ?l rdf:type ontology:Q1057 . resource:Q23426255 property:P682 ?l }
oxidation-reduction process
The metabolic process that 4-hydroxy-3-methylbut -2 -enyl diphosphate reductase YE0619 is involved in is h oxidation-reduction process
oxidation-reduction process
action filter_type
action find
entity 4-hydroxy-3-methylbut-2-enyl diphosphate reductase    YE0619
relation biological process
type metabolic process
['4-hydroxy-3-methylbut-2-enyl diphosphate reductase    YE0619', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?l WHERE { ?l rdf:type ontology:metabolic_process . resource:4-hydroxy-3-methylbut-2-enyl_diphosphate_reductase____YE0619 property:biological_process ?l }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23426255
P680
Q44424
USER
Which the chemical bond that represents the molecular function of 4-hydroxy-3-methylbut-2-enyl diphosphate reductase    YE0619 ?
(Q23426255,P680,c(Q44424))
action filter_type
action find
entity Q23426255
relation P680
type Q44424
['Q23426255', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?l WHERE { resource:Q23426255 property:P680 ?l . ?l rdf:type ontology:Q44424 }
4-hydroxy-3-methylbut-2-enyl diphosphate reductase    YE0619
action filter_type
action find
entity 4-hydroxy-3-methylbut-2-enyl diphosphate reductase    YE0619
relation molecular function
type chemical bond
['4-hydroxy-3-methylbut-2-enyl diphosphate reductase    YE0619', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?l WHERE { resource:4-hydroxy-3-methylbut-2-enyl_diphosphate_reductase____YE0619 property:molecular_function ?l . ?l rdf:type ontology:chemical_bond }
[]
chemical bond
Q13667380
SYSTEM
metal ion binding
Q13667380
(Q23426255,P680,c(Q44424))
action filter_type
action find
entity Q23426255
relation P680
type Q44424
Represents of [ANSWER]
['Q23426255', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?l WHERE { resource:Q23426255 property:P680 ?l . ?l rdf:type ontology:Q44424 }
metal ion binding
Represents of metal ion binding
metal ion binding
action filter_type
action find
entity 4-hydroxy-3-methylbut-2-enyl diphosphate reductase    YE0619
relation molecular function
type chemical bond
['4-hydroxy-3-methylbut-2-enyl diphosphate reductase    YE0619', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?l WHERE { resource:4-hydroxy-3-methylbut-2-enyl_diphosphate_reductase____YE0619 property:molecular_function ?l . ?l rdf:type ontology:chemical_bond }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q13667380 Q22232421
P680
Q181394
USER
Does dihydroxy-acid dehydratase    Rv0189c have molecular function as that chemical bond ?
(Q22232421,P680,Q13667380)
action is_in
entity Q13667380
action find
entity Q22232421
relation P680
['Q22232421', 'P680', 'Q13667380']
ASK WHERE { resource:Q22232421 property:P680 resource:Q13667380 }
metal ion binding dihydroxy-acid dehydratase    Rv0189c
action is_in
entity metal ion binding
action find
entity dihydroxy-acid dehydratase    Rv0189c
relation molecular function
['dihydroxy-acid dehydratase    Rv0189c', 'molecular function', 'metal ion binding']
ASK WHERE { resource:dihydroxy-acid_dehydratase____Rv0189c property:molecular_function resource:metal_ion_binding }
[]
nutrient
SYSTEM
YES
(Q22232421,P680,Q13667380)
action is_in
entity Q13667380
action find
entity Q22232421
relation P680
[ANSWER]
['Q22232421', 'P680', 'Q13667380']
ASK WHERE { resource:Q22232421 property:P680 resource:Q13667380 }
Yes
action is_in
entity metal ion binding
action find
entity dihydroxy-acid dehydratase    Rv0189c
relation molecular function
['dihydroxy-acid dehydratase    Rv0189c', 'molecular function', 'metal ion binding']
ASK WHERE { resource:dihydroxy-acid_dehydratase____Rv0189c property:molecular_function resource:metal_ion_binding }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, subject is indirect
Q23426255 Q23100946
P702
Q863908
USER
Is 4-hydroxy-3-methylbut-2-enyl diphosphate reductase    YE0619 the gene that encodes that nutrient ?
(Q23426255,P702,Q23100946)
action is_in
entity Q23100946
action find
entity Q23426255
relation P702
['Q23426255', 'P702', 'Q23100946']
ASK WHERE { resource:Q23426255 property:P702 resource:Q23100946 }
4-hydroxy-3-methylbut-2-enyl diphosphate reductase    YE0619 4-hydroxy-3-methylbut-2-enyl diphosphate reductase    YE0619
action is_in
entity 4-hydroxy-3-methylbut-2-enyl diphosphate reductase    YE0619
action find
entity 4-hydroxy-3-methylbut-2-enyl diphosphate reductase    YE0619
relation encoded by
['4-hydroxy-3-methylbut-2-enyl diphosphate reductase    YE0619', 'encoded by', '4-hydroxy-3-methylbut-2-enyl diphosphate reductase    YE0619']
ASK WHERE { resource:4-hydroxy-3-methylbut-2-enyl_diphosphate_reductase____YE0619 property:encoded_by resource:4-hydroxy-3-methylbut-2-enyl_diphosphate_reductase____YE0619 }
[]
nucleic acid sequence
SYSTEM
YES
(Q23426255,P702,Q23100946)
action is_in
entity Q23100946
action find
entity Q23426255
relation P702
[ANSWER]
['Q23426255', 'P702', 'Q23100946']
ASK WHERE { resource:Q23426255 property:P702 resource:Q23100946 }
Yes
action is_in
entity 4-hydroxy-3-methylbut-2-enyl diphosphate reductase    YE0619
action find
entity 4-hydroxy-3-methylbut-2-enyl diphosphate reductase    YE0619
relation encoded by
['4-hydroxy-3-methylbut-2-enyl diphosphate reductase    YE0619', 'encoded by', '4-hydroxy-3-methylbut-2-enyl diphosphate reductase    YE0619']
ASK WHERE { resource:4-hydroxy-3-methylbut-2-enyl_diphosphate_reductase____YE0619 property:encoded_by resource:4-hydroxy-3-methylbut-2-enyl_diphosphate_reductase____YE0619 }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23426255
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
action filter_type
action find_reverse
entity Q23426255
relation P688
type Q863908
SELECT DISTINCT ?a WHERE { ?a property:P688 resource:Q23426255 . ?a rdf:type ontology:Q863908 }
4-hydroxy-3-methylbut-2-enyl diphosphate reductase    YE0619
action filter_type
action find_reverse
entity 4-hydroxy-3-methylbut-2-enyl diphosphate reductase    YE0619
relation encodes
type nucleic acid sequence
SELECT DISTINCT ?a WHERE { ?a property:encodes resource:4-hydroxy-3-methylbut-2-enyl_diphosphate_reductase____YE0619 . ?a rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23100946
SYSTEM
4-hydroxy-3-methylbut-2-enyl diphosphate reductase    YE0619
Q23100946
action filter_type
action find_reverse
entity Q23426255
relation P688
type Q863908
4-hydroxy-3-methylbut-2-enyl diphosphate reductase YE0619 encodes that nutrient
SELECT DISTINCT ?a WHERE { ?a property:P688 resource:Q23426255 . ?a rdf:type ontology:Q863908 }
4-hydroxy-3-methylbut-2-enyl diphosphate reductase    YE0619
4-hydroxy-3-methylbut-2-enyl diphosphate reductase YE0619 encodes that nutrient
4-hydroxy-3-methylbut-2-enyl diphosphate reductase    YE0619
action filter_type
action find_reverse
entity 4-hydroxy-3-methylbut-2-enyl diphosphate reductase    YE0619
relation encodes
type nucleic acid sequence
SELECT DISTINCT ?a WHERE { ?a property:encodes resource:4-hydroxy-3-methylbut-2-enyl_diphosphate_reductase____YE0619 . ?a rdf:type ontology:nucleic_acid_sequence }
[]
Logical Reasoning (All)
Logical|Intersection|Multiple_Relation
Q14883461 Q23100946
P702 P680
Q181394
USER
Which nutrients are encoded by 4-hydroxy-3-methylbut-2-enyl diphosphate reductase    YE0619 and have molecular function as iron-sulfur cluster binding ?
AND((c(Q181394),P702,Q23100946), (c(Q181394),P680,Q14883461))
action filter_type
action intersection
action find_reverse
entity Q23100946
relation P702
action find_reverse
entity Q14883461
relation P680
type Q181394
{'AND': [[{'concept': 'Q181394'}, 'P702', 'Q23100946'], [{'concept': 'Q181394'}, 'P680', 'Q14883461']]}
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:Q181394 . ?x property:P680 resource:Q14883461 . ?x property:P702 resource:Q23100946 }
iron-sulfur cluster binding 4-hydroxy-3-methylbut-2-enyl diphosphate reductase    YE0619
action filter_type
action intersection
action find_reverse
entity 4-hydroxy-3-methylbut-2-enyl diphosphate reductase    YE0619
relation encoded by
action find_reverse
entity iron-sulfur cluster binding
relation molecular function
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'encoded by', '4-hydroxy-3-methylbut-2-enyl diphosphate reductase    YE0619'], [{'concept': 'nutrient'}, 'molecular function', 'iron-sulfur cluster binding']]}
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:nutrient . ?x property:molecular_function resource:iron-sulfur_cluster_binding . ?x property:encoded_by resource:4-hydroxy-3-methylbut-2-enyl_diphosphate_reductase____YE0619 }
[]
nutrient
Q23426255
SYSTEM
4-hydroxy-3-methylbut-2-enyl diphosphate reductase    YE0619
Q23426255
AND((c(Q181394),P702,Q23100946), (c(Q181394),P680,Q14883461))
action filter_type
action intersection
action find_reverse
entity Q23100946
relation P702
action find_reverse
entity Q14883461
relation P680
type Q181394
The 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YE0619 is encoded by 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YE0619 and have molecular function as iron-sulfur cluster binding
{'AND': [[{'concept': 'Q181394'}, 'P702', 'Q23100946'], [{'concept': 'Q181394'}, 'P680', 'Q14883461']]}
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:Q181394 . ?x property:P680 resource:Q14883461 . ?x property:P702 resource:Q23100946 }
4-hydroxy-3-methylbut-2-enyl diphosphate reductase    YE0619
The 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YE0619 is encoded by 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YE0619 and have molecular function as iron-sulfur cluster binding
4-hydroxy-3-methylbut-2-enyl diphosphate reductase    YE0619
action filter_type
action intersection
action find_reverse
entity 4-hydroxy-3-methylbut-2-enyl diphosphate reductase    YE0619
relation encoded by
action find_reverse
entity iron-sulfur cluster binding
relation molecular function
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'encoded by', '4-hydroxy-3-methylbut-2-enyl diphosphate reductase    YE0619'], [{'concept': 'nutrient'}, 'molecular function', 'iron-sulfur cluster binding']]}
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:nutrient . ?x property:molecular_function resource:iron-sulfur_cluster_binding . ?x property:encoded_by resource:4-hydroxy-3-methylbut-2-enyl_diphosphate_reductase____YE0619 }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23426255
P703
Q631147
USER
Which infraspecific name is that nutrient found in ?
(Q23426255,P703,c(Q631147))
action filter_type
action find
entity Q23426255
relation P703
type Q631147
['Q23426255', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?v WHERE { resource:Q23426255 property:P703 ?v . ?v rdf:type ontology:Q631147 }
4-hydroxy-3-methylbut-2-enyl diphosphate reductase    YE0619
action filter_type
action find
entity 4-hydroxy-3-methylbut-2-enyl diphosphate reductase    YE0619
relation found in taxon
type infraspecific name
['4-hydroxy-3-methylbut-2-enyl diphosphate reductase    YE0619', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?v WHERE { resource:4-hydroxy-3-methylbut-2-enyl_diphosphate_reductase____YE0619 property:found_in_taxon ?v . ?v rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102942
SYSTEM
Yersinia enterocolitica subsp. enterocolitica 8081
Q21102942
(Q23426255,P703,c(Q631147))
action filter_type
action find
entity Q23426255
relation P703
type Q631147
[ANSWER] is that nutrient found in
['Q23426255', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?v WHERE { resource:Q23426255 property:P703 ?v . ?v rdf:type ontology:Q631147 }
Yersinia enterocolitica subsp. enterocolitica 8081
Yersinia enterocolitica subsp. enterocolitica 8081 is that nutrient found in
Yersinia enterocolitica subsp. enterocolitica 8081
action filter_type
action find
entity 4-hydroxy-3-methylbut-2-enyl diphosphate reductase    YE0619
relation found in taxon
type infraspecific name
['4-hydroxy-3-methylbut-2-enyl diphosphate reductase    YE0619', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?v WHERE { resource:4-hydroxy-3-methylbut-2-enyl_diphosphate_reductase____YE0619 property:found_in_taxon ?v . ?v rdf:type ontology:infraspecific_name }
[]
Comparative Reasoning (All)
Comparative|More/Less|Mult. entity type|Indirect
P703
Q631147 Q863908 Q181394
USER
Which infraspecific names are greater number of nucleic acid sequences and nutrients found in than that infraspecific name ?
(c(Q863908)|c(Q181394),P703,c(Q631147))
action greater
action union
action find_reverse_tuple_counts
relation P703
type Q631147
type Q863908
action find_reverse_tuple_counts
relation P703
type Q631147
type Q181394
action count
action filter_multi_types
action find_reverse
entity Q21102942
relation P703
type Q863908
type Q181394
[[{'concept': 'Q863908'}, {'concept': 'Q181394'}], 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?c WHERE { { SELECT DISTINCT ( COUNT ( ?h ) AS ?n ) WHERE { ?h property:P703 resource:Q21102942 . { { ?h rdf:type ontology:Q863908 } UNION { ?h rdf:type ontology:Q181394 } } } } . FILTER ( ?r > ?n ) . { SELECT DISTINCT ( COUNT ( ?m ) AS ?r ) ?c WHERE { { ?m property:P703 ?c . ?c rdf:type ontology:Q631147 . ?m rdf:type ontology:Q863908 } UNION { ?c rdf:type ontology:Q631147 . ?m rdf:type ontology:Q181394 . ?m property:P703 ?c } } GROUP BY ?c } }
action greater
action union
action find_reverse_tuple_counts
relation found in taxon
type infraspecific name
type nucleic acid sequence
action find_reverse_tuple_counts
relation found in taxon
type infraspecific name
type nutrient
action count
action filter_multi_types
action find_reverse
entity Yersinia enterocolitica subsp. enterocolitica 8081
relation found in taxon
type nucleic acid sequence
type nutrient
[[{'concept': 'nucleic acid sequence'}, {'concept': 'nutrient'}], 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?c WHERE { { SELECT DISTINCT ( COUNT ( ?h ) AS ?n ) WHERE { ?h property:found_in_taxon resource:Yersinia_enterocolitica_subsp._enterocolitica_8081 . { { ?h rdf:type ontology:nucleic_acid_sequence } UNION { ?h rdf:type ontology:nutrient } } } } . FILTER ( ?r > ?n ) . { SELECT DISTINCT ( COUNT ( ?m ) AS ?r ) ?c WHERE { { ?m property:found_in_taxon ?c . ?c rdf:type ontology:infraspecific_name . ?m rdf:type ontology:nucleic_acid_sequence } UNION { ?c rdf:type ontology:infraspecific_name . ?m rdf:type ontology:nutrient . ?m property:found_in_taxon ?c } } GROUP BY ?c } }
[]
infraspecific name nucleic acid sequence nutrient
Q21102993 Q21102995 Q21102996
SYSTEM
Burkholderia mallei ATCC 23344, Burkholderia pseudomallei K96243, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Q21102993 Q21102995 Q21102996 Q21102997 Q21102998 Q27510868 Q21079489 Q21102943 Q21102941 Q21102947 Q21102930 Q21102924 Q21102927 Q21102986 Q21102928 Q21102918 Q21102988 Q21079490 Q21079491 Q21102944 Q21102950 Q21102953 Q23309229 Q21102972 Q21102970 Q21102971 Q21064863 Q21102931 Q21102937 Q21102934 Q21102938 Q21102939
(c(Q863908)|c(Q181394),P703,c(Q631147))
action greater
action union
action find_reverse_tuple_counts
relation P703
type Q631147
type Q863908
action find_reverse_tuple_counts
relation P703
type Q631147
type Q181394
action count
action filter_multi_types
action find_reverse
entity Q21102942
relation P703
type Q863908
type Q181394
[ANSWERS] are greater number of nucleic acid sequences and nutrients found in than that infraspecific name
[[{'concept': 'Q863908'}, {'concept': 'Q181394'}], 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?c WHERE { { SELECT DISTINCT ( COUNT ( ?h ) AS ?n ) WHERE { ?h property:P703 resource:Q21102942 . { { ?h rdf:type ontology:Q863908 } UNION { ?h rdf:type ontology:Q181394 } } } } . FILTER ( ?r > ?n ) . { SELECT DISTINCT ( COUNT ( ?m ) AS ?r ) ?c WHERE { { ?m property:P703 ?c . ?c rdf:type ontology:Q631147 . ?m rdf:type ontology:Q863908 } UNION { ?c rdf:type ontology:Q631147 . ?m rdf:type ontology:Q181394 . ?m property:P703 ?c } } GROUP BY ?c } }
Burkholderia mallei ATCC 23344 Burkholderia pseudomallei K96243 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Salmonella enterica subsp. enterica serovar Typhi str. CT18 Amycolatopsis mediterranei U32 Saccharomyces cerevisiae S288c Pseudomonas putida KT2440 Yersinia pestis CO92 Shigella flexneri 2a str. 301 Vibrio parahaemolyticus RIMD 2210633 Escherichia coli O157:H7 str. Sakai Bordetella bronchiseptica 253 Enterobacter aerogenes KCTC 2190 Mycobacterium smegmatis str. MC2 155 Enterobacter cloacae subsp. cloacae ATCC 13047 Sinorhizobium meliloti 1021 Streptomyces coelicolor A3(2) Pseudomonas syringae pv. syringae B728a Xanthomonas campestris pv. campestris str. ATCC 33913 Aeromonas hydrophila subsp. hydrophila ATCC 7966 Bacteroides fragilis YCH46 Rhodobacter sphaeroides 2.4.1 Sinorhizobium fredii NGR234 Bacillus thuringiensis serovar konkukian str. 97-27 Bacillus cereus ATCC 14579 Bacillus subtilis subsp. subtilis str. 168 Bordetella parapertussis Bpp5 Escherichia coli UMN026 Escherichia coli O104:H4 str. 2011C-3493 Escherichia coli O83:H1 str. NRG 857C Escherichia coli str. K-12 substr. MG1655 Klebsiella pneumoniae subsp. pneumoniae HS11286
Burkholderia mallei ATCC 23344, Burkholderia pseudomallei K96243 and Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 are greater number of nucleic acid sequences and nutrients found in than that infraspecific name
Burkholderia mallei ATCC 23344 Burkholderia pseudomallei K96243 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
action greater
action union
action find_reverse_tuple_counts
relation found in taxon
type infraspecific name
type nucleic acid sequence
action find_reverse_tuple_counts
relation found in taxon
type infraspecific name
type nutrient
action count
action filter_multi_types
action find_reverse
entity Yersinia enterocolitica subsp. enterocolitica 8081
relation found in taxon
type nucleic acid sequence
type nutrient
[[{'concept': 'nucleic acid sequence'}, {'concept': 'nutrient'}], 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?c WHERE { { SELECT DISTINCT ( COUNT ( ?h ) AS ?n ) WHERE { ?h property:found_in_taxon resource:Yersinia_enterocolitica_subsp._enterocolitica_8081 . { { ?h rdf:type ontology:nucleic_acid_sequence } UNION { ?h rdf:type ontology:nutrient } } } } . FILTER ( ?r > ?n ) . { SELECT DISTINCT ( COUNT ( ?m ) AS ?r ) ?c WHERE { { ?m property:found_in_taxon ?c . ?c rdf:type ontology:infraspecific_name . ?m rdf:type ontology:nucleic_acid_sequence } UNION { ?c rdf:type ontology:infraspecific_name . ?m rdf:type ontology:nutrient . ?m property:found_in_taxon ?c } } GROUP BY ?c } }
[]