Simple Question (Direct)
Simple Question
Q27475401
P682
Q1057
USER
What is the metabolic process that hypothetical protein    SDY_4132 is involved in ?
(Q27475401,P682,c(Q1057))
action filter_type
action find
entity Q27475401
relation P682
type Q1057
['Q27475401', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?j WHERE { resource:Q27475401 property:P682 ?j . ?j rdf:type ontology:Q1057 }
hypothetical protein    SDY_4132
action filter_type
action find
entity hypothetical protein    SDY_4132
relation biological process
type metabolic process
['hypothetical protein    SDY_4132', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?j WHERE { resource:hypothetical_protein____SDY_4132 property:biological_process ?j . ?j rdf:type ontology:metabolic_process }
[]
metabolic process
Q14762260
SYSTEM
carbohydrate metabolic process
Q14762260
(Q27475401,P682,c(Q1057))
action filter_type
action find
entity Q27475401
relation P682
type Q1057
The metabolic process that hypothetical protein SDY_4132 is involved in is the [ANSWER]
['Q27475401', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?j WHERE { resource:Q27475401 property:P682 ?j . ?j rdf:type ontology:Q1057 }
carbohydrate metabolic process
The metabolic process that hypothetical protein SDY_4132 is involved in is the carbohydrate metabolic process
carbohydrate metabolic process
action filter_type
action find
entity hypothetical protein    SDY_4132
relation biological process
type metabolic process
['hypothetical protein    SDY_4132', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?j WHERE { resource:hypothetical_protein____SDY_4132 property:biological_process ?j . ?j rdf:type ontology:metabolic_process }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q27475401
P680
Q44424
USER
Which chemical bonds represent molecular function of that nutrient ?
(Q14762260,P680,c(Q44424))
action filter_type
action find
entity Q27475401
relation P680
type Q44424
['Q14762260', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?y WHERE { resource:Q27475401 property:P680 ?y . ?y rdf:type ontology:Q44424 }
hypothetical protein    SDY_4132
action filter_type
action find
entity hypothetical protein    SDY_4132
relation molecular function
type chemical bond
['carbohydrate metabolic process', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?y WHERE { resource:hypothetical_protein____SDY_4132 property:molecular_function ?y . ?y rdf:type ontology:chemical_bond }
[]
chemical bond
Q14633865 Q13667380
SYSTEM
zinc ion binding, metal ion binding
Q14633865 Q13667380
(Q14762260,P680,c(Q44424))
action filter_type
action find
entity Q27475401
relation P680
type Q44424
[ANSWERS] represent molecular function of that nutrient
['Q14762260', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?y WHERE { resource:Q27475401 property:P680 ?y . ?y rdf:type ontology:Q44424 }
zinc ion binding metal ion binding
Zinc ion binding and metal ion binding represent molecular function of that nutrient
zinc ion binding metal ion binding
action filter_type
action find
entity hypothetical protein    SDY_4132
relation molecular function
type chemical bond
['carbohydrate metabolic process', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?y WHERE { resource:hypothetical_protein____SDY_4132 property:molecular_function ?y . ?y rdf:type ontology:chemical_bond }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q24134076 Q27475401
P702
Q863908
USER
Which nucleic acid sequences genes encode hypothetical protein    SDY_4132 or methylthioribose-1-phosphate isomerase    ECL_03090 ?
OR((Q27475401,P702,c(Q863908)), (Q24134076,P702,c(Q863908)))
action filter_type
action union
action find
entity Q27475401
relation P702
action find
entity Q24134076
relation P702
type Q863908
{'OR': [['Q27475401', 'P702', {'concept': 'Q863908'}], ['Q24134076', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?k WHERE { ?k rdf:type ontology:Q863908 . { { resource:Q24134076 property:P702 ?k } UNION { resource:Q27475401 property:P702 ?k } } }
methylthioribose-1-phosphate isomerase    ECL_03090 hypothetical protein    SDY_4132
action filter_type
action union
action find
entity hypothetical protein    SDY_4132
relation encoded by
action find
entity methylthioribose-1-phosphate isomerase    ECL_03090
relation encoded by
type nucleic acid sequence
{'OR': [['hypothetical protein    SDY_4132', 'encoded by', {'concept': 'nucleic acid sequence'}], ['methylthioribose-1-phosphate isomerase    ECL_03090', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?k WHERE { ?k rdf:type ontology:nucleic_acid_sequence . { { resource:methylthioribose-1-phosphate_isomerase____ECL_03090 property:encoded_by ?k } UNION { resource:hypothetical_protein____SDY_4132 property:encoded_by ?k } } }
[]
nucleic acid sequence
Q23082092 Q23140088
SYSTEM
methylthioribose-1-phosphate isomerase    ECL_03090, hypothetical protein    SDY_4132
Q23082092 Q23140088
OR((Q27475401,P702,c(Q863908)), (Q24134076,P702,c(Q863908)))
action filter_type
action union
action find
entity Q27475401
relation P702
action find
entity Q24134076
relation P702
type Q863908
[ANSWERS]
{'OR': [['Q27475401', 'P702', {'concept': 'Q863908'}], ['Q24134076', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?k WHERE { ?k rdf:type ontology:Q863908 . { { resource:Q24134076 property:P702 ?k } UNION { resource:Q27475401 property:P702 ?k } } }
methylthioribose-1-phosphate isomerase    ECL_03090 hypothetical protein    SDY_4132
Or methylthioribose-1-phosphate isomerase ECL 03090 and hypothetical protein SDY 4132 encode hypothetical protein SDY_4132 or methylthioribose-1-phosphate isomerase ECL_03090
methylthioribose-1-phosphate isomerase    ECL_03090 hypothetical protein    SDY_4132
action filter_type
action union
action find
entity hypothetical protein    SDY_4132
relation encoded by
action find
entity methylthioribose-1-phosphate isomerase    ECL_03090
relation encoded by
type nucleic acid sequence
{'OR': [['hypothetical protein    SDY_4132', 'encoded by', {'concept': 'nucleic acid sequence'}], ['methylthioribose-1-phosphate isomerase    ECL_03090', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?k WHERE { ?k rdf:type ontology:nucleic_acid_sequence . { { resource:methylthioribose-1-phosphate_isomerase____ECL_03090 property:encoded_by ?k } UNION { resource:hypothetical_protein____SDY_4132 property:encoded_by ?k } } }
[]
Simple Question (Coreferenced)
Simple Question|Mult. Entity
Q23082092 Q23140088
P703
Q631147
USER
What are the taxon to which those nucleic acid sequences belongs to ?
(Q23082092,P703,c(Q631147)) (Q23140088,P703,c(Q631147))
action filter_type
action find
entity prev_answer
relation P703
type Q631147
['Q23082092', 'P703', {'concept': 'Q631147'}] ['Q23140088', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?k WHERE { ?k rdf:type ontology:Q631147 . ?b property:P703 ?k . VALUES ( ?b ) { ( resource:Q23082092 ) ( resource:Q23140088 ) } }
methylthioribose-1-phosphate isomerase    ECL_03090 hypothetical protein    SDY_4132
action filter_type
action find
entity prev_answer
relation found in taxon
type infraspecific name
['methylthioribose-1-phosphate isomerase    ECL_03090', 'found in taxon', {'concept': 'infraspecific name'}] ['hypothetical protein    SDY_4132', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?k WHERE { ?k rdf:type ontology:infraspecific_name . ?b property:found_in_taxon ?k . VALUES ( ?b ) { ( resource:methylthioribose-1-phosphate_isomerase____ECL_03090 ) ( resource:hypothetical_protein____SDY_4132 ) } }
[]
infraspecific name
Q21102928 Q21102940
SYSTEM
Enterobacter cloacae subsp. cloacae ATCC 13047, Shigella dysenteriae Sd197
Q21102928 Q21102940
(Q23082092,P703,c(Q631147)) (Q23140088,P703,c(Q631147))
action filter_type
action find
entity prev_answer
relation P703
type Q631147
[ANSWERS]
['Q23082092', 'P703', {'concept': 'Q631147'}] ['Q23140088', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?k WHERE { ?k rdf:type ontology:Q631147 . ?b property:P703 ?k . VALUES ( ?b ) { ( resource:Q23082092 ) ( resource:Q23140088 ) } }
Enterobacter cloacae subsp. cloacae ATCC 13047 Shigella dysenteriae Sd197
Enterobacter cloacae subsp. cloacae ATCC 13047 and Shigella dysenteriae Sd197
Enterobacter cloacae subsp. cloacae ATCC 13047 Shigella dysenteriae Sd197
action filter_type
action find
entity prev_answer
relation found in taxon
type infraspecific name
['methylthioribose-1-phosphate isomerase    ECL_03090', 'found in taxon', {'concept': 'infraspecific name'}] ['hypothetical protein    SDY_4132', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?k WHERE { ?k rdf:type ontology:infraspecific_name . ?b property:found_in_taxon ?k . VALUES ( ?b ) { ( resource:methylthioribose-1-phosphate_isomerase____ECL_03090 ) ( resource:hypothetical_protein____SDY_4132 ) } }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23082092
P688
Q181394
USER
Which nutrient is encoded by methylthioribose-1-phosphate isomerase    ECL_03090 ?
(Q23082092,P688,c(Q181394))
action filter_type
action find
entity Q23082092
relation P688
type Q181394
['Q23082092', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?e WHERE { resource:Q23082092 property:P688 ?e . ?e rdf:type ontology:Q181394 }
methylthioribose-1-phosphate isomerase    ECL_03090
action filter_type
action find
entity methylthioribose-1-phosphate isomerase    ECL_03090
relation encodes
type nutrient
['methylthioribose-1-phosphate isomerase    ECL_03090', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?e WHERE { resource:methylthioribose-1-phosphate_isomerase____ECL_03090 property:encodes ?e . ?e rdf:type ontology:nutrient }
[]
nutrient
Q24134076
SYSTEM
methylthioribose-1-phosphate isomerase    ECL_03090
Q24134076
(Q23082092,P688,c(Q181394))
action filter_type
action find
entity Q23082092
relation P688
type Q181394
Methylthioribose-1-phosphate isomerase ECL 03090 is encoded by methylthioribose-1-phosphate isomerase ECL_03090
['Q23082092', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?e WHERE { resource:Q23082092 property:P688 ?e . ?e rdf:type ontology:Q181394 }
methylthioribose-1-phosphate isomerase    ECL_03090
Methylthioribose-1-phosphate isomerase ECL 03090 is encoded by methylthioribose-1-phosphate isomerase ECL_03090
methylthioribose-1-phosphate isomerase    ECL_03090
action filter_type
action find
entity methylthioribose-1-phosphate isomerase    ECL_03090
relation encodes
type nutrient
['methylthioribose-1-phosphate isomerase    ECL_03090', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?e WHERE { resource:methylthioribose-1-phosphate_isomerase____ECL_03090 property:encodes ?e . ?e rdf:type ontology:nutrient }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation|Incomplete
Q23116034 Q23082092
P688
Q181394
USER
Or sodium/glutamate symport carrier protein    FN1801?
OR((Q23082092,P688,c(Q181394)), (Q23116034,P688,c(Q181394)))
action filter_type
action union
action find
entity Q23082092
relation P688
action find
entity Q23116034
relation P688
type Q181394
{'OR': [['Q23082092', 'P688', {'concept': 'Q181394'}], ['Q23116034', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?l WHERE { { ?z property:P688 ?l . VALUES ( ?z ) { ( resource:Q23116034 ) ( resource:Q23082092 ) } } . ?l rdf:type ontology:Q181394 }
sodium/glutamate symport carrier protein    FN1801 methylthioribose-1-phosphate isomerase    ECL_03090
action filter_type
action union
action find
entity methylthioribose-1-phosphate isomerase    ECL_03090
relation encodes
action find
entity sodium/glutamate symport carrier protein    FN1801
relation encodes
type nutrient
{'OR': [['methylthioribose-1-phosphate isomerase    ECL_03090', 'encodes', {'concept': 'nutrient'}], ['sodium/glutamate symport carrier protein    FN1801', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?l WHERE { { ?z property:encodes ?l . VALUES ( ?z ) { ( resource:sodium/glutamate_symport_carrier_protein____FN1801 ) ( resource:methylthioribose-1-phosphate_isomerase____ECL_03090 ) } } . ?l rdf:type ontology:nutrient }
[]
nutrient
Q24134076 Q23460184
SYSTEM
methylthioribose-1-phosphate isomerase    ECL_03090, sodium/glutamate symport carrier protein    FN1801
Q24134076 Q23460184
OR((Q23082092,P688,c(Q181394)), (Q23116034,P688,c(Q181394)))
action filter_type
action union
action find
entity Q23082092
relation P688
action find
entity Q23116034
relation P688
type Q181394
[ANSWERS]
{'OR': [['Q23082092', 'P688', {'concept': 'Q181394'}], ['Q23116034', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?l WHERE { { ?z property:P688 ?l . VALUES ( ?z ) { ( resource:Q23116034 ) ( resource:Q23082092 ) } } . ?l rdf:type ontology:Q181394 }
methylthioribose-1-phosphate isomerase    ECL_03090 sodium/glutamate symport carrier protein    FN1801
methylthioribose-1-phosphate isomerase    ECL_03090 sodium/glutamate symport carrier protein    FN1801
action filter_type
action union
action find
entity methylthioribose-1-phosphate isomerase    ECL_03090
relation encodes
action find
entity sodium/glutamate symport carrier protein    FN1801
relation encodes
type nutrient
{'OR': [['methylthioribose-1-phosphate isomerase    ECL_03090', 'encodes', {'concept': 'nutrient'}], ['sodium/glutamate symport carrier protein    FN1801', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?l WHERE { { ?z property:encodes ?l . VALUES ( ?z ) { ( resource:sodium/glutamate_symport_carrier_protein____FN1801 ) ( resource:methylthioribose-1-phosphate_isomerase____ECL_03090 ) } } . ?l rdf:type ontology:nutrient }
[]
Simple Question (Coreferenced)
Simple Question|Mult. Entity
Q24134076 Q23460184
P702
Q863908
USER
What are the gene that encodes those nutrients ?
(Q24134076,P702,c(Q863908)) (Q23460184,P702,c(Q863908))
action filter_type
action find
entity prev_answer
relation P702
type Q863908
['Q24134076', 'P702', {'concept': 'Q863908'}] ['Q23460184', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?p WHERE { ?p rdf:type ontology:Q863908 . VALUES ( ?l ) { ( resource:Q24134076 ) ( resource:Q23460184 ) } . ?l property:P702 ?p }
methylthioribose-1-phosphate isomerase    ECL_03090 sodium/glutamate symport carrier protein    FN1801
action filter_type
action find
entity prev_answer
relation encoded by
type nucleic acid sequence
['methylthioribose-1-phosphate isomerase    ECL_03090', 'encoded by', {'concept': 'nucleic acid sequence'}] ['sodium/glutamate symport carrier protein    FN1801', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?p WHERE { ?p rdf:type ontology:nucleic_acid_sequence . VALUES ( ?l ) { ( resource:methylthioribose-1-phosphate_isomerase____ECL_03090 ) ( resource:sodium/glutamate_symport_carrier_protein____FN1801 ) } . ?l property:encoded_by ?p }
[]
nucleic acid sequence
Q23082092 Q23116034
SYSTEM
methylthioribose-1-phosphate isomerase    ECL_03090, sodium/glutamate symport carrier protein    FN1801
Q23082092 Q23116034
(Q24134076,P702,c(Q863908)) (Q23460184,P702,c(Q863908))
action filter_type
action find
entity prev_answer
relation P702
type Q863908
[ANSWERS]
['Q24134076', 'P702', {'concept': 'Q863908'}] ['Q23460184', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?p WHERE { ?p rdf:type ontology:Q863908 . VALUES ( ?l ) { ( resource:Q24134076 ) ( resource:Q23460184 ) } . ?l property:P702 ?p }
methylthioribose-1-phosphate isomerase    ECL_03090 sodium/glutamate symport carrier protein    FN1801
The gene that encodes those nutrients are the methylthioribose-1-phosphate isomerase ECL 03090 and sodium/glutamate symport carrier protein FN1801
methylthioribose-1-phosphate isomerase    ECL_03090 sodium/glutamate symport carrier protein    FN1801
action filter_type
action find
entity prev_answer
relation encoded by
type nucleic acid sequence
['methylthioribose-1-phosphate isomerase    ECL_03090', 'encoded by', {'concept': 'nucleic acid sequence'}] ['sodium/glutamate symport carrier protein    FN1801', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?p WHERE { ?p rdf:type ontology:nucleic_acid_sequence . VALUES ( ?l ) { ( resource:methylthioribose-1-phosphate_isomerase____ECL_03090 ) ( resource:sodium/glutamate_symport_carrier_protein____FN1801 ) } . ?l property:encoded_by ?p }
[]