Simple Question (Direct)
Simple Question
Q23598672
P703
Q16521
USER
Which taxon is TonB-dependent heme/hemoglobin receptor HmuA    SO_3669 found in ?
(Q23598672,P703,c(Q16521))
action filter_type
action find
entity Q23598672
relation P703
type Q16521
['Q23598672', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?f WHERE { resource:Q23598672 property:P703 ?f . ?f rdf:type ontology:Q16521 }
TonB-dependent heme/hemoglobin receptor HmuA    SO_3669
action filter_type
action find
entity TonB-dependent heme/hemoglobin receptor HmuA    SO_3669
relation found in taxon
type taxon
['TonB-dependent heme/hemoglobin receptor HmuA    SO_3669', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?f WHERE { resource:TonB-dependent_heme/hemoglobin_receptor_HmuA____SO_3669 property:found_in_taxon ?f . ?f rdf:type ontology:taxon }
[]
taxon
Q21398938
SYSTEM
Shewanella oneidensis MR-1
Q21398938
(Q23598672,P703,c(Q16521))
action filter_type
action find
entity Q23598672
relation P703
type Q16521
[ANSWER] is TonB-dependent heme/hemoglobin receptor HmuA SO_3669 found in
['Q23598672', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?f WHERE { resource:Q23598672 property:P703 ?f . ?f rdf:type ontology:Q16521 }
Shewanella oneidensis MR-1
Shewanella oneidensis MR-1 is TonB-dependent heme/hemoglobin receptor HmuA SO_3669 found in
Shewanella oneidensis MR-1
action filter_type
action find
entity TonB-dependent heme/hemoglobin receptor HmuA    SO_3669
relation found in taxon
type taxon
['TonB-dependent heme/hemoglobin receptor HmuA    SO_3669', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?f WHERE { resource:TonB-dependent_heme/hemoglobin_receptor_HmuA____SO_3669 property:found_in_taxon ?f . ?f rdf:type ontology:taxon }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23598672
P681
Q15989253
USER
Which part is a component of TonB-dependent heme/hemoglobin receptor HmuA    SO_3669 ?
(Q23598672,P681,c(Q15989253))
action filter_type
action find
entity Q23598672
relation P681
type Q15989253
['Q23598672', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?k WHERE { ?k rdf:type ontology:Q15989253 . resource:Q23598672 property:P681 ?k }
TonB-dependent heme/hemoglobin receptor HmuA    SO_3669
action filter_type
action find
entity TonB-dependent heme/hemoglobin receptor HmuA    SO_3669
relation cell component
type part
['TonB-dependent heme/hemoglobin receptor HmuA    SO_3669', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?k WHERE { ?k rdf:type ontology:part . resource:TonB-dependent_heme/hemoglobin_receptor_HmuA____SO_3669 property:cell_component ?k }
[]
part
Q14349455
SYSTEM
membrane
Q14349455
(Q23598672,P681,c(Q15989253))
action filter_type
action find
entity Q23598672
relation P681
type Q15989253
The [ANSWER] is a component of TonB-dependent heme/hemoglobin receptor HmuA SO_3669
['Q23598672', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?k WHERE { ?k rdf:type ontology:Q15989253 . resource:Q23598672 property:P681 ?k }
membrane
The membrane is a component of TonB-dependent heme/hemoglobin receptor HmuA SO_3669
membrane
action filter_type
action find
entity TonB-dependent heme/hemoglobin receptor HmuA    SO_3669
relation cell component
type part
['TonB-dependent heme/hemoglobin receptor HmuA    SO_3669', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?k WHERE { ?k rdf:type ontology:part . resource:TonB-dependent_heme/hemoglobin_receptor_HmuA____SO_3669 property:cell_component ?k }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q21987033
Q15989253
USER
And how about E3 ubiquitin-protein ligase TTC3?
(Q21987033,P681,c(Q15989253))
action filter_type
action find
entity Q21987033
relation P681
type Q15989253
['Q21987033', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?d WHERE { resource:Q21987033 property:P681 ?d . ?d rdf:type ontology:Q15989253 }
E3 ubiquitin-protein ligase TTC3
action filter_type
action find
entity E3 ubiquitin-protein ligase TTC3
relation cell component
type part
['E3 ubiquitin-protein ligase TTC3', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?d WHERE { resource:E3_ubiquitin-protein_ligase_TTC3 property:cell_component ?d . ?d rdf:type ontology:part }
[]
part
Q127702 Q79899 Q40260
SYSTEM
vacuole, cytoplasm, nucleus
Q127702 Q79899 Q40260
(Q21987033,P681,c(Q15989253))
action filter_type
action find
entity Q21987033
relation P681
type Q15989253
[ANSWERS]
['Q21987033', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?d WHERE { resource:Q21987033 property:P681 ?d . ?d rdf:type ontology:Q15989253 }
vacuole cytoplasm nucleus
vacuole cytoplasm nucleus
action filter_type
action find
entity E3 ubiquitin-protein ligase TTC3
relation cell component
type part
['E3 ubiquitin-protein ligase TTC3', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?d WHERE { resource:E3_ubiquitin-protein_ligase_TTC3 property:cell_component ?d . ?d rdf:type ontology:part }
[]
Clarification
Simple Question|Single Entity|Indirect
Q127702
P361
Q5058355
USER
Which cellular component is that one a part of ?
(Q127702,P361,c(Q5058355))
action filter_type
action find
entity Q127702
relation P361
type Q5058355
['Q127702', 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ?c WHERE { resource:Q127702 property:P361 ?c . ?c rdf:type ontology:Q5058355 }
vacuole
action filter_type
action find
entity vacuole
relation part of
type cellular component
['vacuole', 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ?c WHERE { resource:vacuole property:part_of ?c . ?c rdf:type ontology:cellular_component }
[]
cellular component
Clarification for simple ques.
Q79899
SYSTEM
Did you mean cytoplasm ?
Q127702 Q79899 Q40260
(Q127702,P361,c(Q5058355)) (Q79899,P361,c(Q5058355)) (Q40260,P361,c(Q5058355))
[ANSWER]
['Q127702', 'P361', {'concept': 'Q5058355'}] ['Q79899', 'P361', {'concept': 'Q5058355'}] ['Q40260', 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ?c WHERE { resource:Q127702 property:P361 ?c . ?c rdf:type ontology:Q5058355 }
vacuole cytoplasm nucleus
Did you mean cytoplasm ?
cytoplasm
['vacuole', 'part of', {'concept': 'cellular component'}] ['cytoplasm', 'part of', {'concept': 'cellular component'}] ['nucleus', 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ?c WHERE { resource:vacuole property:part_of ?c . ?c rdf:type ontology:cellular_component }
[]
Simple Question (Coreferenced)
USER
No, I meant vacuole. Could you tell me the answer for that?
(Q127702,P361,c(Q5058355))
Q127702
['Q127702', 'P361', {'concept': 'Q5058355'}]
['vacuole', 'part of', {'concept': 'cellular component'}]
[]
Q899827
SYSTEM
endomembrane system
Q899827
(Q127702,P361,c(Q5058355))
action filter_type
action find
entity Q127702
relation P361
type Q5058355
The [ANSWER] is that one a part of
['Q127702', 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ?c WHERE { resource:Q127702 property:P361 ?c . ?c rdf:type ontology:Q5058355 }
endomembrane system
The endomembrane system is that one a part of
endomembrane system
action filter_type
action find
entity vacuole
relation part of
type cellular component
['vacuole', 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ?c WHERE { resource:vacuole property:part_of ?c . ?c rdf:type ontology:cellular_component }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q899827 Q24106847
P681
Q181394
USER
Is that one a cell component of hypothetical protein    NGR_b00540 ?
(Q24106847,P681,Q899827)
action is_in
entity Q24106847
action find
entity Q899827
relation P681
['Q24106847', 'P681', 'Q899827']
ASK WHERE { resource:Q899827 property:P681 resource:Q24106847 }
endomembrane system hypothetical protein    NGR_b00540
action is_in
entity hypothetical protein    NGR_b00540
action find
entity endomembrane system
relation cell component
['hypothetical protein    NGR_b00540', 'cell component', 'endomembrane system']
ASK WHERE { resource:endomembrane_system property:cell_component resource:hypothetical_protein____NGR_b00540 }
[]
nutrient
SYSTEM
NO
(Q24106847,P681,Q899827)
action is_in
entity Q24106847
action find
entity Q899827
relation P681
[ANSWER]
['Q24106847', 'P681', 'Q899827']
ASK WHERE { resource:Q899827 property:P681 resource:Q24106847 }
No
action is_in
entity hypothetical protein    NGR_b00540
action find
entity endomembrane system
relation cell component
['hypothetical protein    NGR_b00540', 'cell component', 'endomembrane system']
ASK WHERE { resource:endomembrane_system property:cell_component resource:hypothetical_protein____NGR_b00540 }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q899827
P361
Q5058355
USER
Which cellular components are a portion of that one ?
action filter_type
action find_reverse
entity Q899827
relation P361
type Q5058355
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:Q5058355 . ?b property:P361 resource:Q899827 }
endomembrane system
action filter_type
action find_reverse
entity endomembrane system
relation part of
type cellular component
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:cellular_component . ?b property:part_of resource:endomembrane_system }
[]
cellular component
Q29548 Q22328495 Q14860540
SYSTEM
plasma membrane, spitzenkorper, clathrin-coated pit
Q14860540 Q21095308 Q79927 Q29548 Q22328495 Q21109092
action filter_type
action find_reverse
entity Q899827
relation P361
type Q5058355
[ANSWERS] are a portion of that one
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:Q5058355 . ?b property:P361 resource:Q899827 }
clathrin-coated pit retromer complex endoplasmic reticulum plasma membrane spitzenkorper nuclear outer membrane-endoplasmic reticulum membrane network
Plasma membrane, spitzenkorper and clathrin-coated pit are a portion of that one
plasma membrane spitzenkorper clathrin-coated pit
action filter_type
action find_reverse
entity endomembrane system
relation part of
type cellular component
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:cellular_component . ?b property:part_of resource:endomembrane_system }
[]
Simple Question (Coreferenced)
Simple Question|Mult. Entity
Q29548 Q22328495 Q14860540
P361
Q5058355
USER
Which cellular components are those ones a part of ?
(Q29548,P361,c(Q5058355)) (Q22328495,P361,c(Q5058355)) (Q14860540,P361,c(Q5058355))
action filter_type
action find
entity prev_answer
relation P361
type Q5058355
['Q29548', 'P361', {'concept': 'Q5058355'}] ['Q22328495', 'P361', {'concept': 'Q5058355'}] ['Q14860540', 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ?e WHERE { ?e rdf:type ontology:Q5058355 . VALUES ( ?s ) { ( resource:Q14860540 ) ( resource:Q21095308 ) ( resource:Q79927 ) } . ?s property:P361 ?e }
plasma membrane spitzenkorper clathrin-coated pit
action filter_type
action find
entity prev_answer
relation part of
type cellular component
['plasma membrane', 'part of', {'concept': 'cellular component'}] ['spitzenkorper', 'part of', {'concept': 'cellular component'}] ['clathrin-coated pit', 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ?e WHERE { ?e rdf:type ontology:cellular_component . VALUES ( ?s ) { ( resource:clathrin-coated_pit ) ( resource:retromer_complex ) ( resource:endoplasmic_reticulum ) } . ?s property:part_of ?e }
[]
cellular component
Q899827 Q22330431 Q14864171
SYSTEM
endomembrane system, unencapsulated part of cell, cell periphery
Q899827 Q22330431 Q14864171 Q899827 Q899827
(Q29548,P361,c(Q5058355)) (Q22328495,P361,c(Q5058355)) (Q14860540,P361,c(Q5058355))
action filter_type
action find
entity prev_answer
relation P361
type Q5058355
[ANSWERS] are those ones a part of
['Q29548', 'P361', {'concept': 'Q5058355'}] ['Q22328495', 'P361', {'concept': 'Q5058355'}] ['Q14860540', 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ?e WHERE { ?e rdf:type ontology:Q5058355 . VALUES ( ?s ) { ( resource:Q14860540 ) ( resource:Q21095308 ) ( resource:Q79927 ) } . ?s property:P361 ?e }
endomembrane system unencapsulated part of cell cell periphery endomembrane system endomembrane system
Endomembrane system, unencapsulated part of cell and cell periphery are those ones a part of
endomembrane system unencapsulated part of cell cell periphery
action filter_type
action find
entity prev_answer
relation part of
type cellular component
['plasma membrane', 'part of', {'concept': 'cellular component'}] ['spitzenkorper', 'part of', {'concept': 'cellular component'}] ['clathrin-coated pit', 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ?e WHERE { ?e rdf:type ontology:cellular_component . VALUES ( ?s ) { ( resource:clathrin-coated_pit ) ( resource:retromer_complex ) ( resource:endoplasmic_reticulum ) } . ?s property:part_of ?e }
[]