Simple Question (Direct)
Simple Question
Q21121603
P703
Q16521
USER
Where is Leucine-rich repeat transmembrane neuronal protein 2 found ?
(Q21121603,P703,c(Q16521))
action filter_type
action find
entity Q21121603
relation P703
type Q16521
['Q21121603', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?a WHERE { resource:Q21121603 property:P703 ?a . ?a rdf:type ontology:Q16521 }
Leucine-rich repeat transmembrane neuronal protein 2
action filter_type
action find
entity Leucine-rich repeat transmembrane neuronal protein 2
relation found in taxon
type taxon
['Leucine-rich repeat transmembrane neuronal protein 2', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?a WHERE { resource:Leucine-rich_repeat_transmembrane_neuronal_protein_2 property:found_in_taxon ?a . ?a rdf:type ontology:taxon }
[]
taxon
Q15978631
SYSTEM
Homo sapiens
Q15978631
(Q21121603,P703,c(Q16521))
action filter_type
action find
entity Q21121603
relation P703
type Q16521
Leucine-rich repeat transmembrane neuronal protein 2 is found in [ANSWER]
['Q21121603', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?a WHERE { resource:Q21121603 property:P703 ?a . ?a rdf:type ontology:Q16521 }
Homo sapiens
Leucine-rich repeat transmembrane neuronal protein 2 is found in Homo sapiens
Homo sapiens
action filter_type
action find
entity Leucine-rich repeat transmembrane neuronal protein 2
relation found in taxon
type taxon
['Leucine-rich repeat transmembrane neuronal protein 2', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?a WHERE { resource:Leucine-rich_repeat_transmembrane_neuronal_protein_2 property:found_in_taxon ?a . ?a rdf:type ontology:taxon }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21121603
P688
Q863908
USER
What is the nucleic acid sequence that is encoded by Leucine-rich repeat transmembrane neuronal protein 2 ?
(c(Q863908),P688,Q21121603)
action filter_type
action find_reverse
entity Q21121603
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q21121603']
SELECT DISTINCT ?f WHERE { ?f property:P688 resource:Q21121603 . ?f rdf:type ontology:Q863908 }
Leucine-rich repeat transmembrane neuronal protein 2
action filter_type
action find_reverse
entity Leucine-rich repeat transmembrane neuronal protein 2
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Leucine-rich repeat transmembrane neuronal protein 2']
SELECT DISTINCT ?f WHERE { ?f property:encodes resource:Leucine-rich_repeat_transmembrane_neuronal_protein_2 . ?f rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18037894
SYSTEM
LRRTM2
Q18037894
(c(Q863908),P688,Q21121603)
action filter_type
action find_reverse
entity Q21121603
relation P688
type Q863908
The nucleic acid sequence that is encoded by Leucine-rich repeat transmembrane neuronal protein 2 is called [ANSWER]
[{'concept': 'Q863908'}, 'P688', 'Q21121603']
SELECT DISTINCT ?f WHERE { ?f property:P688 resource:Q21121603 . ?f rdf:type ontology:Q863908 }
LRRTM2
The nucleic acid sequence that is encoded by Leucine-rich repeat transmembrane neuronal protein 2 is called LRRTM2
LRRTM2
action filter_type
action find_reverse
entity Leucine-rich repeat transmembrane neuronal protein 2
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Leucine-rich repeat transmembrane neuronal protein 2']
SELECT DISTINCT ?f WHERE { ?f property:encodes resource:Leucine-rich_repeat_transmembrane_neuronal_protein_2 . ?f rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18037894
P702
Q181394
USER
What is encoded by that nucleic acid sequence ?
(c(Q181394),P702,Q18037894)
action filter_type
action find_reverse
entity Q18037894
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q18037894']
SELECT DISTINCT ?s WHERE { ?s property:P702 resource:Q18037894 . ?s rdf:type ontology:Q181394 }
LRRTM2
action filter_type
action find_reverse
entity LRRTM2
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'LRRTM2']
SELECT DISTINCT ?s WHERE { ?s property:encoded_by resource:LRRTM2 . ?s rdf:type ontology:nutrient }
[]
nutrient
Q21121603
SYSTEM
Leucine-rich repeat transmembrane neuronal protein 2
Q21121603
(c(Q181394),P702,Q18037894)
action filter_type
action find_reverse
entity Q18037894
relation P702
type Q181394
The [ANSWER] is encoded by that nucleic acid sequence
[{'concept': 'Q181394'}, 'P702', 'Q18037894']
SELECT DISTINCT ?s WHERE { ?s property:P702 resource:Q18037894 . ?s rdf:type ontology:Q181394 }
Leucine-rich repeat transmembrane neuronal protein 2
The Leucine-rich repeat transmembrane neuronal protein 2 is encoded by that nucleic acid sequence
Leucine-rich repeat transmembrane neuronal protein 2
action filter_type
action find_reverse
entity LRRTM2
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'LRRTM2']
SELECT DISTINCT ?s WHERE { ?s property:encoded_by resource:LRRTM2 . ?s rdf:type ontology:nutrient }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18037894
P684
Q863908
USER
Which nucleic acid sequence is an orthologous gene for that one ?
(Q21121603,P684,c(Q863908))
action filter_type
action find
entity Q18037894
relation P684
type Q863908
['Q21121603', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?h WHERE { ?h rdf:type ontology:Q863908 . resource:Q18037894 property:P684 ?h }
LRRTM2
action filter_type
action find
entity LRRTM2
relation ortholog
type nucleic acid sequence
['Leucine-rich repeat transmembrane neuronal protein 2', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?h WHERE { ?h rdf:type ontology:nucleic_acid_sequence . resource:LRRTM2 property:ortholog ?h }
[]
nucleic acid sequence
Q18272503
SYSTEM
Lrrtm2
Q18272503
(Q21121603,P684,c(Q863908))
action filter_type
action find
entity Q18037894
relation P684
type Q863908
[ANSWER] is an orthologous gene for that one
['Q21121603', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?h WHERE { ?h rdf:type ontology:Q863908 . resource:Q18037894 property:P684 ?h }
Lrrtm2
Lrrtm2 is an orthologous gene for that one
Lrrtm2
action filter_type
action find
entity LRRTM2
relation ortholog
type nucleic acid sequence
['Leucine-rich repeat transmembrane neuronal protein 2', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?h WHERE { ?h rdf:type ontology:nucleic_acid_sequence . resource:LRRTM2 property:ortholog ?h }
[]
Verification (Boolean) (All)
Verification|3 entities, 2 direct, 2(direct) are query entities, subject is indirect
Q18272503 Q18037894 Q23137439
P684
Q863908
USER
Does that nucleic acid sequence have LRRTM2 and hypothetical protein    ECs2767 as its orthologous gene ?
(Q18272503,P684,Q18037894) (Q18272503,P684,Q23137439)
action is_in
entity Q18272503
action intersection
action find_reverse
entity Q18037894
relation P684
action find_reverse
entity Q23137439
relation P684
['Q18272503', 'P684', 'Q18037894'] ['Q18272503', 'P684', 'Q23137439']
ASK WHERE { resource:Q18272503 property:P684 resource:Q18037894 . resource:Q18272503 property:P684 resource:Q23137439 }
Lrrtm2 LRRTM2 hypothetical protein    ECs2767
action is_in
entity Lrrtm2
action intersection
action find_reverse
entity LRRTM2
relation ortholog
action find_reverse
entity hypothetical protein    ECs2767
relation ortholog
['Lrrtm2', 'ortholog', 'LRRTM2'] ['Lrrtm2', 'ortholog', 'hypothetical protein    ECs2767']
ASK WHERE { resource:Lrrtm2 property:ortholog resource:LRRTM2 . resource:Lrrtm2 property:ortholog resource:hypothetical_protein____ECs2767 }
[]
nucleic acid sequence
SYSTEM
YES and NO respectively
(Q18272503,P684,Q18037894) (Q18272503,P684,Q23137439)
action is_in
entity Q18272503
action intersection
action find_reverse
entity Q18037894
relation P684
action find_reverse
entity Q23137439
relation P684
[ANSWER]
['Q18272503', 'P684', 'Q18037894'] ['Q18272503', 'P684', 'Q23137439']
ASK WHERE { resource:Q18272503 property:P684 resource:Q18037894 . resource:Q18272503 property:P684 resource:Q23137439 }
YES and NO respectively
action is_in
entity Lrrtm2
action intersection
action find_reverse
entity LRRTM2
relation ortholog
action find_reverse
entity hypothetical protein    ECs2767
relation ortholog
['Lrrtm2', 'ortholog', 'LRRTM2'] ['Lrrtm2', 'ortholog', 'hypothetical protein    ECs2767']
ASK WHERE { resource:Lrrtm2 property:ortholog resource:LRRTM2 . resource:Lrrtm2 property:ortholog resource:hypothetical_protein____ECs2767 }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type
Q18272503
P684
Q863908
USER
How many nucleic acid sequences are an otrhologus genes for Lrrtm2 ?
(Q18272503,P684,c(Q863908))
action count
action filter_type
action find
entity Q18272503
relation P684
type Q863908
['Q18272503', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ( COUNT ( ?h ) AS ?f ) WHERE { resource:Q18272503 property:P684 ?h . ?h rdf:type ontology:Q863908 }
Lrrtm2
action count
action filter_type
action find
entity Lrrtm2
relation ortholog
type nucleic acid sequence
['Lrrtm2', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ( COUNT ( ?h ) AS ?f ) WHERE { resource:Lrrtm2 property:ortholog ?h . ?h rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
SYSTEM
1
Q18037894
(Q18272503,P684,c(Q863908))
action count
action filter_type
action find
entity Q18272503
relation P684
type Q863908
[ANSWER]
['Q18272503', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ( COUNT ( ?h ) AS ?f ) WHERE { resource:Q18272503 property:P684 ?h . ?h rdf:type ontology:Q863908 }
LRRTM2
1
action count
action filter_type
action find
entity Lrrtm2
relation ortholog
type nucleic acid sequence
['Lrrtm2', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ( COUNT ( ?h ) AS ?f ) WHERE { resource:Lrrtm2 property:ortholog ?h . ?h rdf:type ontology:nucleic_acid_sequence }
[]
Quantitative Reasoning (Count) (All)
Incomplete count-based ques
Q14864696
Q863908
USER
And also tell me about Egf?
(Q14864696,P684,c(Q863908))
action count
action filter_type
action find
entity Q14864696
relation P684
type Q863908
['Q14864696', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ( COUNT ( ?e ) AS ?d ) WHERE { resource:Q14864696 property:P684 ?e . ?e rdf:type ontology:Q863908 }
Egf
action count
action filter_type
action find
entity Egf
relation ortholog
type nucleic acid sequence
['Egf', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ( COUNT ( ?e ) AS ?d ) WHERE { resource:Egf property:ortholog ?e . ?e rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
SYSTEM
1
(Q14864696,P684,c(Q863908))
action count
action filter_type
action find
entity Q14864696
relation P684
type Q863908
[ANSWER]
['Q14864696', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ( COUNT ( ?e ) AS ?d ) WHERE { resource:Q14864696 property:P684 ?e . ?e rdf:type ontology:Q863908 }
1
action count
action filter_type
action find
entity Egf
relation ortholog
type nucleic acid sequence
['Egf', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ( COUNT ( ?e ) AS ?d ) WHERE { resource:Egf property:ortholog ?e . ?e rdf:type ontology:nucleic_acid_sequence }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type
Q21121603
P681
Q5058355
USER
How many cellular components are components of Leucine-rich repeat transmembrane neuronal protein 2 ?
(Q21121603,P681,c(Q5058355))
action count
action filter_type
action find
entity Q21121603
relation P681
type Q5058355
['Q21121603', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ( COUNT ( ?c ) AS ?p ) WHERE { resource:Q21121603 property:P681 ?c . ?c rdf:type ontology:Q5058355 }
Leucine-rich repeat transmembrane neuronal protein 2
action count
action filter_type
action find
entity Leucine-rich repeat transmembrane neuronal protein 2
relation cell component
type cellular component
['Leucine-rich repeat transmembrane neuronal protein 2', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ( COUNT ( ?c ) AS ?p ) WHERE { resource:Leucine-rich_repeat_transmembrane_neuronal_protein_2 property:cell_component ?c . ?c rdf:type ontology:cellular_component }
[]
cellular component
SYSTEM
2
Q5419646 Q29548
(Q21121603,P681,c(Q5058355))
action count
action filter_type
action find
entity Q21121603
relation P681
type Q5058355
[ANSWER]
['Q21121603', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ( COUNT ( ?c ) AS ?p ) WHERE { resource:Q21121603 property:P681 ?c . ?c rdf:type ontology:Q5058355 }
excitatory synapse plasma membrane
2
action count
action filter_type
action find
entity Leucine-rich repeat transmembrane neuronal protein 2
relation cell component
type cellular component
['Leucine-rich repeat transmembrane neuronal protein 2', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ( COUNT ( ?c ) AS ?p ) WHERE { resource:Leucine-rich_repeat_transmembrane_neuronal_protein_2 property:cell_component ?c . ?c rdf:type ontology:cellular_component }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21985717
P681
Q5058355
USER
Which are the cell components of Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3 ?
(Q21985717,P681,c(Q5058355))
action filter_type
action find
entity Q21985717
relation P681
type Q5058355
['Q21985717', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?z WHERE { resource:Q21985717 property:P681 ?z . ?z rdf:type ontology:Q5058355 }
Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3
action filter_type
action find
entity Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3
relation cell component
type cellular component
['Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?z WHERE { resource:Membrane-associated_guanylate_kinase,_WW_and_PDZ_domain-containing_protein_3 property:cell_component ?z . ?z rdf:type ontology:cellular_component }
[]
cellular component
Q29548 Q14873267
SYSTEM
plasma membrane, cell-cell junction
Q29548 Q14873267
(Q21985717,P681,c(Q5058355))
action filter_type
action find
entity Q21985717
relation P681
type Q5058355
The [ANSWERS] are the cell components of Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3
['Q21985717', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?z WHERE { resource:Q21985717 property:P681 ?z . ?z rdf:type ontology:Q5058355 }
plasma membrane cell-cell junction
The plasma membrane and cell-cell junction are the cell components of Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3
plasma membrane cell-cell junction
action filter_type
action find
entity Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3
relation cell component
type cellular component
['Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?z WHERE { resource:Membrane-associated_guanylate_kinase,_WW_and_PDZ_domain-containing_protein_3 property:cell_component ?z . ?z rdf:type ontology:cellular_component }
[]
Verification (Boolean) (All)
Verification|one entity, multiple entities (as object) referred indirectly
Q21604288
P681
Q181394
USER
Do adenine phosphoribosyltransferase    BB_0777 have those ones as their cell component ?
(Q21604288,P681,Q29548) (Q21604288,P681,Q14873267)
action is_in
entity prev_answer
action find
entity Q21604288
relation P681
['Q21604288', 'P681', 'Q29548'] ['Q21604288', 'P681', 'Q14873267']
ASK WHERE { resource:Q21604288 property:P681 ?h . VALUES ( ?h ) { ( resource:Q29548 ) ( resource:Q14873267 ) } }
adenine phosphoribosyltransferase    BB_0777
action is_in
entity prev_answer
action find
entity adenine phosphoribosyltransferase    BB_0777
relation cell component
['adenine phosphoribosyltransferase    BB_0777', 'cell component', 'plasma membrane'] ['adenine phosphoribosyltransferase    BB_0777', 'cell component', 'cell-cell junction']
ASK WHERE { resource:adenine_phosphoribosyltransferase____BB_0777 property:cell_component ?h . VALUES ( ?h ) { ( resource:plasma_membrane ) ( resource:cell-cell_junction ) } }
[]
nutrient
SYSTEM
NO
(Q21604288,P681,Q29548) (Q21604288,P681,Q14873267)
action is_in
entity prev_answer
action find
entity Q21604288
relation P681
[ANSWER]
['Q21604288', 'P681', 'Q29548'] ['Q21604288', 'P681', 'Q14873267']
ASK WHERE { resource:Q21604288 property:P681 ?h . VALUES ( ?h ) { ( resource:Q29548 ) ( resource:Q14873267 ) } }
No
action is_in
entity prev_answer
action find
entity adenine phosphoribosyltransferase    BB_0777
relation cell component
['adenine phosphoribosyltransferase    BB_0777', 'cell component', 'plasma membrane'] ['adenine phosphoribosyltransferase    BB_0777', 'cell component', 'cell-cell junction']
ASK WHERE { resource:adenine_phosphoribosyltransferase____BB_0777 property:cell_component ?h . VALUES ( ?h ) { ( resource:plasma_membrane ) ( resource:cell-cell_junction ) } }
[]