Simple Question (Direct)
Simple Question
Q23517352
P682
Q2996394
USER
What is the biological process that tRNA (guanine-N(7)-)-methyltransferase    BSU29900 is involved in ?
(Q23517352,P682,c(Q2996394))
action filter_type
action find
entity Q23517352
relation P682
type Q2996394
['Q23517352', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?v WHERE { resource:Q23517352 property:P682 ?v . ?v rdf:type ontology:Q2996394 }
tRNA (guanine-N(7)-)-methyltransferase    BSU29900
action filter_type
action find
entity tRNA (guanine-N(7)-)-methyltransferase    BSU29900
relation biological process
type biological process
['tRNA (guanine-N(7)-)-methyltransferase    BSU29900', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?v WHERE { resource:tRNA_(guanine-N(7)-)-methyltransferase____BSU29900 property:biological_process ?v . ?v rdf:type ontology:biological_process }
[]
biological process
Q518328
SYSTEM
methylation
Q518328
(Q23517352,P682,c(Q2996394))
action filter_type
action find
entity Q23517352
relation P682
type Q2996394
The biological process that tRNA ( guanine-N ( 7 ) -)-methyltransferase BSU29900 is involved in is pid [ANSWER]
['Q23517352', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?v WHERE { resource:Q23517352 property:P682 ?v . ?v rdf:type ontology:Q2996394 }
methylation
The biological process that tRNA ( guanine-N ( 7 ) -)-methyltransferase BSU29900 is involved in is pid methylation
methylation
action filter_type
action find
entity tRNA (guanine-N(7)-)-methyltransferase    BSU29900
relation biological process
type biological process
['tRNA (guanine-N(7)-)-methyltransferase    BSU29900', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?v WHERE { resource:tRNA_(guanine-N(7)-)-methyltransferase____BSU29900 property:biological_process ?v . ?v rdf:type ontology:biological_process }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23517352
P702
Q863908
USER
What encodes tRNA (guanine-N(7)-)-methyltransferase    BSU29900 ?
(Q23517352,P702,c(Q863908))
action filter_type
action find
entity Q23517352
relation P702
type Q863908
['Q23517352', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?p WHERE { resource:Q23517352 property:P702 ?p . ?p rdf:type ontology:Q863908 }
tRNA (guanine-N(7)-)-methyltransferase    BSU29900
action filter_type
action find
entity tRNA (guanine-N(7)-)-methyltransferase    BSU29900
relation encoded by
type nucleic acid sequence
['tRNA (guanine-N(7)-)-methyltransferase    BSU29900', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?p WHERE { resource:tRNA_(guanine-N(7)-)-methyltransferase____BSU29900 property:encoded_by ?p . ?p rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23351914
SYSTEM
tRNA (guanine-N(7)-)-methyltransferase    BSU29900
Q23351914
(Q23517352,P702,c(Q863908))
action filter_type
action find
entity Q23517352
relation P702
type Q863908
TRNA (guanine-N(7)-)-methyltransferase BSU29900 encodes tRNA (guanine-N(7)-)-methyltransferase BSU29900
['Q23517352', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?p WHERE { resource:Q23517352 property:P702 ?p . ?p rdf:type ontology:Q863908 }
tRNA (guanine-N(7)-)-methyltransferase    BSU29900
TRNA (guanine-N(7)-)-methyltransferase BSU29900 encodes tRNA (guanine-N(7)-)-methyltransferase BSU29900
tRNA (guanine-N(7)-)-methyltransferase    BSU29900
action filter_type
action find
entity tRNA (guanine-N(7)-)-methyltransferase    BSU29900
relation encoded by
type nucleic acid sequence
['tRNA (guanine-N(7)-)-methyltransferase    BSU29900', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?p WHERE { resource:tRNA_(guanine-N(7)-)-methyltransferase____BSU29900 property:encoded_by ?p . ?p rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23351914
P703
Q631147
USER
What is the taxon to which that nucleic acid sequence belongs to ?
(Q23351914,P703,c(Q631147))
action filter_type
action find
entity Q23351914
relation P703
type Q631147
['Q23351914', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?i WHERE { ?i rdf:type ontology:Q631147 . resource:Q23351914 property:P703 ?i }
tRNA (guanine-N(7)-)-methyltransferase    BSU29900
action filter_type
action find
entity tRNA (guanine-N(7)-)-methyltransferase    BSU29900
relation found in taxon
type infraspecific name
['tRNA (guanine-N(7)-)-methyltransferase    BSU29900', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?i WHERE { ?i rdf:type ontology:infraspecific_name . resource:tRNA_(guanine-N(7)-)-methyltransferase____BSU29900 property:found_in_taxon ?i }
[]
infraspecific name
Q21102971
SYSTEM
Bacillus subtilis subsp. subtilis str. 168
Q21102971
(Q23351914,P703,c(Q631147))
action filter_type
action find
entity Q23351914
relation P703
type Q631147
[ANSWER]
['Q23351914', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?i WHERE { ?i rdf:type ontology:Q631147 . resource:Q23351914 property:P703 ?i }
Bacillus subtilis subsp. subtilis str. 168
Bacillus subtilis subsp. subtilis str. 168
Bacillus subtilis subsp. subtilis str. 168
action filter_type
action find
entity tRNA (guanine-N(7)-)-methyltransferase    BSU29900
relation found in taxon
type infraspecific name
['tRNA (guanine-N(7)-)-methyltransferase    BSU29900', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?i WHERE { ?i rdf:type ontology:infraspecific_name . resource:tRNA_(guanine-N(7)-)-methyltransferase____BSU29900 property:found_in_taxon ?i }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q23394521
Q631147
USER
And also tell me about hypothetical protein    Caur_1869?
(Q23394521,P703,c(Q631147))
action filter_type
action find
entity Q23394521
relation P703
type Q631147
['Q23394521', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?g WHERE { resource:Q23394521 property:P703 ?g . ?g rdf:type ontology:Q631147 }
hypothetical protein    Caur_1869
action filter_type
action find
entity hypothetical protein    Caur_1869
relation found in taxon
type infraspecific name
['hypothetical protein    Caur_1869', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?g WHERE { resource:hypothetical_protein____Caur_1869 property:found_in_taxon ?g . ?g rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102955
SYSTEM
Chloroflexus aurantiacus J-10-fl
Q21102955
(Q23394521,P703,c(Q631147))
action filter_type
action find
entity Q23394521
relation P703
type Q631147
[ANSWER]
['Q23394521', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?g WHERE { resource:Q23394521 property:P703 ?g . ?g rdf:type ontology:Q631147 }
Chloroflexus aurantiacus J-10-fl
Chloroflexus aurantiacus J-10-fl
action filter_type
action find
entity hypothetical protein    Caur_1869
relation found in taxon
type infraspecific name
['hypothetical protein    Caur_1869', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?g WHERE { resource:hypothetical_protein____Caur_1869 property:found_in_taxon ?g . ?g rdf:type ontology:infraspecific_name }
[]
Logical Reasoning (All)
Logical|Intersection|Single_Relation
Q23349294 Q23517352
P703
Q631147
USER
Which infraspecific names are tRNA (guanine-N(7)-)-methyltransferase    BSU29900 and aryl-phospho-beta-d-glucosidase BglC    BSU03410 found ?
AND((Q23517352,P703,c(Q631147)), (Q23349294,P703,c(Q631147)))
action filter_type
action intersection
action find
entity Q23517352
relation P703
action find
entity Q23349294
relation P703
type Q631147
{'AND': [['Q23517352', 'P703', {'concept': 'Q631147'}], ['Q23349294', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?a WHERE { resource:Q23517352 property:P703 ?a . resource:Q23349294 property:P703 ?a . ?a rdf:type ontology:Q631147 }
aryl-phospho-beta-d-glucosidase BglC    BSU03410 tRNA (guanine-N(7)-)-methyltransferase    BSU29900
action filter_type
action intersection
action find
entity tRNA (guanine-N(7)-)-methyltransferase    BSU29900
relation found in taxon
action find
entity aryl-phospho-beta-d-glucosidase BglC    BSU03410
relation found in taxon
type infraspecific name
{'AND': [['tRNA (guanine-N(7)-)-methyltransferase    BSU29900', 'found in taxon', {'concept': 'infraspecific name'}], ['aryl-phospho-beta-d-glucosidase BglC    BSU03410', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?a WHERE { resource:tRNA_(guanine-N(7)-)-methyltransferase____BSU29900 property:found_in_taxon ?a . resource:aryl-phospho-beta-d-glucosidase_BglC____BSU03410 property:found_in_taxon ?a . ?a rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102971
SYSTEM
Bacillus subtilis subsp. subtilis str. 168
Q21102971
AND((Q23517352,P703,c(Q631147)), (Q23349294,P703,c(Q631147)))
action filter_type
action intersection
action find
entity Q23517352
relation P703
action find
entity Q23349294
relation P703
type Q631147
[ANSWER] is tRNA (guanine-N(7)-)-methyltransferase BSU29900 and aryl-phospho-beta-d-glucosidase BglC BSU03410 found
{'AND': [['Q23517352', 'P703', {'concept': 'Q631147'}], ['Q23349294', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?a WHERE { resource:Q23517352 property:P703 ?a . resource:Q23349294 property:P703 ?a . ?a rdf:type ontology:Q631147 }
Bacillus subtilis subsp. subtilis str. 168
Bacillus subtilis subsp. subtilis str. 168 is tRNA (guanine-N(7)-)-methyltransferase BSU29900 and aryl-phospho-beta-d-glucosidase BglC BSU03410 found
Bacillus subtilis subsp. subtilis str. 168
action filter_type
action intersection
action find
entity tRNA (guanine-N(7)-)-methyltransferase    BSU29900
relation found in taxon
action find
entity aryl-phospho-beta-d-glucosidase BglC    BSU03410
relation found in taxon
type infraspecific name
{'AND': [['tRNA (guanine-N(7)-)-methyltransferase    BSU29900', 'found in taxon', {'concept': 'infraspecific name'}], ['aryl-phospho-beta-d-glucosidase BglC    BSU03410', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?a WHERE { resource:tRNA_(guanine-N(7)-)-methyltransferase____BSU29900 property:found_in_taxon ?a . resource:aryl-phospho-beta-d-glucosidase_BglC____BSU03410 property:found_in_taxon ?a . ?a rdf:type ontology:infraspecific_name }
[]
Quantitative Reasoning (All)
Quantitative|Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q181394 Q8386 Q79529
USER
Which nutrients do atleast 19 drugs and chemical substances contact with ?
(c(Q8386)|c(Q79529),P129,c(Q181394))
action atleast
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
value 19
[[{'concept': 'Q8386'}, {'concept': 'Q79529'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?r WHERE { { SELECT DISTINCT ( COUNT ( ?s ) AS ?u ) ?r WHERE { VALUES ( ?f ) { ( ontology:Q8386 ) ( ontology:Q79529 ) } . ?s rdf:type ?f } GROUP BY ?r } . FILTER ( ?u >= 19 ) }
action atleast
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
value 19
[[{'concept': 'drug'}, {'concept': 'chemical substance'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?r WHERE { { SELECT DISTINCT ( COUNT ( ?s ) AS ?u ) ?r WHERE { VALUES ( ?f ) { ( ontology:drug ) ( ontology:chemical_substance ) } . ?s rdf:type ?f } GROUP BY ?r } . FILTER ( ?u >= 19 ) }
[]
nutrient drug chemical substance
Q2034004 Q1949517 Q4639596
SYSTEM
D(2) dopamine receptor, 5-hydroxytryptamine receptor 2A, 5-hydroxytryptamine receptor 2B
Q7050954 Q309513 Q308856 Q4847910 Q287961 Q2663095 Q5123372 Q410142 Q288797 Q287958 Q21110867 Q4847900 Q4847907 Q4639596 Q4734884 Q4734887 Q4734886 Q21116162 Q2844056 Q21115334 Q21115051 Q21115052 Q415364 Q21109355 Q4734894 Q21110872 Q4734892 Q21114578 Q21108118 Q4734891 Q21114576 Q21131500 Q8083989 Q21115046 Q21115043 Q21114582 Q21497939 Q1949517 Q21109363 Q5520260 Q2034004
(c(Q8386)|c(Q79529),P129,c(Q181394))
action atleast
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
value 19
[ANSWERS] atleast 19 drugs and chemical substances contact with
[[{'concept': 'Q8386'}, {'concept': 'Q79529'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?r WHERE { { SELECT DISTINCT ( COUNT ( ?s ) AS ?u ) ?r WHERE { VALUES ( ?f ) { ( ontology:Q8386 ) ( ontology:Q79529 ) } . ?s rdf:type ?f } GROUP BY ?r } . FILTER ( ?u >= 19 ) }
Sodium-dependent noradrenaline transporter Histamine H1 receptor D(4) dopamine receptor Muscarinic acetylcholine receptor M2 Beta-2 adrenergic receptor Glucocorticoid receptor Mu-type opioid receptor Sodium-dependent serotonin transporter 5-hydroxytryptamine receptor 1B Beta-1 adrenergic receptor D(1A) dopamine receptor Muscarinic acetylcholine receptor M1 Muscarinic acetylcholine receptor M4 5-hydroxytryptamine receptor 2B Alpha-1A adrenergic receptor Alpha-1D adrenergic receptor Alpha-1B adrenergic receptor Adenosine receptor A2a Muscarinic acetylcholine receptor M3 Delta-type opioid receptor 5-hydroxytryptamine receptor 1E 5-hydroxytryptamine receptor 1F Prostaglandin G/H synthase 2 5-hydroxytryptamine receptor 7 Alpha-2B adrenergic receptor D(3) dopamine receptor Alpha-2A adrenergic receptor Gamma-aminobutyric acid receptor subunit alpha-3 5-hydroxytryptamine receptor 2C Alpha-2C adrenergic receptor Gamma-aminobutyric acid receptor subunit alpha-5 D(1B) dopamine receptor Kappa-type opioid receptor 5-hydroxytryptamine receptor 1D 5-hydroxytryptamine receptor 1A Gamma-aminobutyric acid receptor subunit alpha-2 5-hydroxytryptamine receptor 7 5-hydroxytryptamine receptor 2A 5-hydroxytryptamine receptor 6 Gamma-aminobutyric acid receptor subunit alpha-1 D(2) dopamine receptor
D(2) dopamine receptor, 5-hydroxytryptamine receptor 2A and 5-hydroxytryptamine receptor 2B atleast 19 drugs and chemical substances contact with
D(2) dopamine receptor 5-hydroxytryptamine receptor 2A 5-hydroxytryptamine receptor 2B
action atleast
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
value 19
[[{'concept': 'drug'}, {'concept': 'chemical substance'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?r WHERE { { SELECT DISTINCT ( COUNT ( ?s ) AS ?u ) ?r WHERE { VALUES ( ?f ) { ( ontology:drug ) ( ontology:chemical_substance ) } . ?s rdf:type ?f } GROUP BY ?r } . FILTER ( ?u >= 19 ) }
[]
Verification (Boolean) (All)
Verification|one entity, multiple entities (as object) referred indirectly
Q414762
P129
Q8386
USER
Does Etravirine can interact with those nutrients ?
(Q414762,P129,Q2034004) (Q414762,P129,Q1949517) (Q414762,P129,Q4639596)
action is_in
entity prev_answer
action find
entity Q414762
relation P129
['Q414762', 'P129', 'Q2034004'] ['Q414762', 'P129', 'Q1949517'] ['Q414762', 'P129', 'Q4639596']
ASK WHERE { VALUES ( ?s ) { ( resource:Q7050954 ) ( resource:Q309513 ) ( resource:Q308856 ) } . resource:Q414762 property:P129 ?s }
Etravirine
action is_in
entity prev_answer
action find
entity Etravirine
relation physically interacts with
['Etravirine', 'physically interacts with', 'D(2) dopamine receptor'] ['Etravirine', 'physically interacts with', '5-hydroxytryptamine receptor 2A'] ['Etravirine', 'physically interacts with', '5-hydroxytryptamine receptor 2B']
ASK WHERE { VALUES ( ?s ) { ( resource:Sodium-dependent_noradrenaline_transporter ) ( resource:Histamine_H1_receptor ) ( resource:D(4)_dopamine_receptor ) } . resource:Etravirine property:physically_interacts_with ?s }
[]
drug
SYSTEM
NO
(Q414762,P129,Q2034004) (Q414762,P129,Q1949517) (Q414762,P129,Q4639596)
action is_in
entity prev_answer
action find
entity Q414762
relation P129
[ANSWER]
['Q414762', 'P129', 'Q2034004'] ['Q414762', 'P129', 'Q1949517'] ['Q414762', 'P129', 'Q4639596']
ASK WHERE { VALUES ( ?s ) { ( resource:Q7050954 ) ( resource:Q309513 ) ( resource:Q308856 ) } . resource:Q414762 property:P129 ?s }
No
action is_in
entity prev_answer
action find
entity Etravirine
relation physically interacts with
['Etravirine', 'physically interacts with', 'D(2) dopamine receptor'] ['Etravirine', 'physically interacts with', '5-hydroxytryptamine receptor 2A'] ['Etravirine', 'physically interacts with', '5-hydroxytryptamine receptor 2B']
ASK WHERE { VALUES ( ?s ) { ( resource:Sodium-dependent_noradrenaline_transporter ) ( resource:Histamine_H1_receptor ) ( resource:D(4)_dopamine_receptor ) } . resource:Etravirine property:physically_interacts_with ?s }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q21981360
Q5058355
USER
And also tell me about Fermitin family homolog 2?
(Q21981360,P681,c(Q5058355))
action filter_type
action find
entity Q21981360
relation P681
type Q5058355
['Q21981360', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?h WHERE { resource:Q21981360 property:P681 ?h . ?h rdf:type ontology:Q5058355 }
Fermitin family homolog 2
action filter_type
action find
entity Fermitin family homolog 2
relation cell component
type cellular component
['Fermitin family homolog 2', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?h WHERE { resource:Fermitin_family_homolog_2 property:cell_component ?h . ?h rdf:type ontology:cellular_component }
[]
cellular component
Q189094 Q29548 Q14353100
SYSTEM
cell surface, plasma membrane, cell projection
Q189094 Q29548 Q14353100
(Q21981360,P681,c(Q5058355))
action filter_type
action find
entity Q21981360
relation P681
type Q5058355
[ANSWERS]
['Q21981360', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?h WHERE { resource:Q21981360 property:P681 ?h . ?h rdf:type ontology:Q5058355 }
cell surface plasma membrane cell projection
cell surface plasma membrane cell projection
action filter_type
action find
entity Fermitin family homolog 2
relation cell component
type cellular component
['Fermitin family homolog 2', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?h WHERE { resource:Fermitin_family_homolog_2 property:cell_component ?h . ?h rdf:type ontology:cellular_component }
[]