Simple Question (Direct)
Simple Question
Q22258655
P680
Q44424
USER
What represents the molecular function of DNA primase    LBA1197 ?
(Q22258655,P680,c(Q44424))
action filter_type
action find
entity Q22258655
relation P680
type Q44424
['Q22258655', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?h WHERE { resource:Q22258655 property:P680 ?h . ?h rdf:type ontology:Q44424 }
DNA primase    LBA1197
action filter_type
action find
entity DNA primase    LBA1197
relation molecular function
type chemical bond
['DNA primase    LBA1197', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?h WHERE { resource:DNA_primase____LBA1197 property:molecular_function ?h . ?h rdf:type ontology:chemical_bond }
[]
chemical bond
Q14633865 Q14860850 Q13667380
SYSTEM
zinc ion binding, magnesium ion binding, metal ion binding
Q14633865 Q14860850 Q13667380
(Q22258655,P680,c(Q44424))
action filter_type
action find
entity Q22258655
relation P680
type Q44424
[ANSWERS] represent the molecular function of DNA primase LBA1197
['Q22258655', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?h WHERE { resource:Q22258655 property:P680 ?h . ?h rdf:type ontology:Q44424 }
zinc ion binding magnesium ion binding metal ion binding
Zinc ion binding, magnesium ion binding and metal ion binding represent the molecular function of DNA primase LBA1197
zinc ion binding magnesium ion binding metal ion binding
action filter_type
action find
entity DNA primase    LBA1197
relation molecular function
type chemical bond
['DNA primase    LBA1197', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?h WHERE { resource:DNA_primase____LBA1197 property:molecular_function ?h . ?h rdf:type ontology:chemical_bond }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q22258655
P702
Q863908
USER
What encodes DNA primase    LBA1197 ?
(Q22258655,P702,c(Q863908))
action filter_type
action find
entity Q22258655
relation P702
type Q863908
['Q22258655', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?l WHERE { resource:Q22258655 property:P702 ?l . ?l rdf:type ontology:Q863908 }
DNA primase    LBA1197
action filter_type
action find
entity DNA primase    LBA1197
relation encoded by
type nucleic acid sequence
['DNA primase    LBA1197', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?l WHERE { resource:DNA_primase____LBA1197 property:encoded_by ?l . ?l rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q22239553
SYSTEM
DNA primase    LBA1197
Q22239553
(Q22258655,P702,c(Q863908))
action filter_type
action find
entity Q22258655
relation P702
type Q863908
DNA primase LBA1197 encodes DNA primase LBA1197
['Q22258655', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?l WHERE { resource:Q22258655 property:P702 ?l . ?l rdf:type ontology:Q863908 }
DNA primase    LBA1197
DNA primase LBA1197 encodes DNA primase LBA1197
DNA primase    LBA1197
action filter_type
action find
entity DNA primase    LBA1197
relation encoded by
type nucleic acid sequence
['DNA primase    LBA1197', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?l WHERE { resource:DNA_primase____LBA1197 property:encoded_by ?l . ?l rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q22258655
P688
Q863908
USER
Which nucleic acid sequence encodes DNA primase    LBA1197 ?
(c(Q863908),P688,Q22258655)
action filter_type
action find_reverse
entity Q22258655
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q22258655']
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:Q863908 . ?b property:P688 resource:Q22258655 }
DNA primase    LBA1197
action filter_type
action find_reverse
entity DNA primase    LBA1197
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'DNA primase    LBA1197']
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:nucleic_acid_sequence . ?b property:encodes resource:DNA_primase____LBA1197 }
[]
nucleic acid sequence
Q22239553
SYSTEM
DNA primase    LBA1197
Q22239553
(c(Q863908),P688,Q22258655)
action filter_type
action find_reverse
entity Q22258655
relation P688
type Q863908
DNA primase LBA1197 encodes DNA primase LBA1197
[{'concept': 'Q863908'}, 'P688', 'Q22258655']
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:Q863908 . ?b property:P688 resource:Q22258655 }
DNA primase    LBA1197
DNA primase LBA1197 encodes DNA primase LBA1197
DNA primase    LBA1197
action filter_type
action find_reverse
entity DNA primase    LBA1197
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'DNA primase    LBA1197']
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:nucleic_acid_sequence . ?b property:encodes resource:DNA_primase____LBA1197 }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q22239553
P703
Q631147
USER
What is the taxon to which that nucleic acid sequence belongs to ?
(Q22239553,P703,c(Q631147))
action filter_type
action find
entity Q22239553
relation P703
type Q631147
['Q22239553', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?i WHERE { resource:Q22239553 property:P703 ?i . ?i rdf:type ontology:Q631147 }
DNA primase    LBA1197
action filter_type
action find
entity DNA primase    LBA1197
relation found in taxon
type infraspecific name
['DNA primase    LBA1197', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?i WHERE { resource:DNA_primase____LBA1197 property:found_in_taxon ?i . ?i rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102977
SYSTEM
Lactobacillus acidophilus NCFM
Q21102977
(Q22239553,P703,c(Q631147))
action filter_type
action find
entity Q22239553
relation P703
type Q631147
[ANSWER]
['Q22239553', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?i WHERE { resource:Q22239553 property:P703 ?i . ?i rdf:type ontology:Q631147 }
Lactobacillus acidophilus NCFM
Lactobacillus acidophilus NCFM
Lactobacillus acidophilus NCFM
action filter_type
action find
entity DNA primase    LBA1197
relation found in taxon
type infraspecific name
['DNA primase    LBA1197', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?i WHERE { resource:DNA_primase____LBA1197 property:found_in_taxon ?i . ?i rdf:type ontology:infraspecific_name }
[]
Comparative Reasoning (All)
Comparative|More/Less|Single entity type|Indirect
P703
Q631147 Q863908
USER
Which infraspecific names are the taxon to which approximately the same number of nucleic acid sequences belongs to as that infraspecific name ?
(c(Q863908),P703,c(Q631147))
action approx
action find_reverse_tuple_counts
relation P703
type Q631147
type Q863908
action count
action filter_type
action find
entity Q21102977
relation P703
type Q631147
[{'concept': 'Q863908'}, 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?x WHERE { { SELECT DISTINCT ?x ( COUNT ( ?n ) AS ?j ) WHERE { ?x rdf:type ontology:Q631147 . ?n rdf:type ontology:Q863908 . ?n property:P703 ?x } GROUP BY ?x } . { SELECT DISTINCT ( COUNT ( ?w ) AS ?l ) WHERE { ?w rdf:type ontology:Q631147 . resource:Q21102977 property:P703 ?w } } . FILTER ( ?j = ?l ) }
action approx
action find_reverse_tuple_counts
relation found in taxon
type infraspecific name
type nucleic acid sequence
action count
action filter_type
action find
entity Lactobacillus acidophilus NCFM
relation found in taxon
type infraspecific name
[{'concept': 'nucleic acid sequence'}, 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?x WHERE { { SELECT DISTINCT ?x ( COUNT ( ?n ) AS ?j ) WHERE { ?x rdf:type ontology:infraspecific_name . ?n rdf:type ontology:nucleic_acid_sequence . ?n property:found_in_taxon ?x } GROUP BY ?x } . { SELECT DISTINCT ( COUNT ( ?w ) AS ?l ) WHERE { ?w rdf:type ontology:infraspecific_name . resource:Lactobacillus_acidophilus_NCFM property:found_in_taxon ?w } } . FILTER ( ?j = ?l ) }
[]
infraspecific name nucleic acid sequence
Q21102919 Q21079559 Q21102990
SYSTEM
Legionella pneumophila subsp. pneumophila str. Philadelphia 1, Salinibacter ruber DSM 13855, Mycoplasma pneumoniae M129
Q21102990 Q21102991 Q21102992 Q21102994 Q21102999 Q21102960 Q21102919 Q21102965 Q21102964 Q21102949 Q21102966 Q21102961 Q21102963 Q21102962 Q21102921 Q21102922 Q21102925 Q21102974 Q21102989 Q21102985 Q21102983 Q21102982 Q21102981 Q21102980 Q21102969 Q21102968 Q21102956 Q21102957 Q21102951 Q21102978 Q21102977 Q21102959 Q21064832 Q21102948 Q21102979 Q21079559 Q21102967
(c(Q863908),P703,c(Q631147))
action approx
action find_reverse_tuple_counts
relation P703
type Q631147
type Q863908
action count
action filter_type
action find
entity Q21102977
relation P703
type Q631147
[ANSWERS] are the taxon to which approximately the same number of nucleic acid sequences belongs to as that infraspecific name
[{'concept': 'Q863908'}, 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?x WHERE { { SELECT DISTINCT ?x ( COUNT ( ?n ) AS ?j ) WHERE { ?x rdf:type ontology:Q631147 . ?n rdf:type ontology:Q863908 . ?n property:P703 ?x } GROUP BY ?x } . { SELECT DISTINCT ( COUNT ( ?w ) AS ?l ) WHERE { ?w rdf:type ontology:Q631147 . resource:Q21102977 property:P703 ?w } } . FILTER ( ?j = ?l ) }
Mycoplasma pneumoniae M129 Thermotoga maritima MSB8 Gardnerella vaginalis ATCC 14019 Streptococcus mitis B6 Geobacter sulfurreducens PCA Streptococcus suis BM407 Legionella pneumophila subsp. pneumophila str. Philadelphia 1 Enterococcus faecalis V583 Streptococcus pyogenes M1 GAS Rickettsia prowazekii str. Madrid E Enterococcus faecium DO Streptococcus mutans UA159 Streptococcus pneumoniae R6 Streptococcus agalactiae 2603V/R Neisseria gonorrhoeae FA 1090 Neisseria meningitidis MC58 Bordetella pertussis Tohama I Clostridium botulinum A str. Hall Mycoplasma mycoides subsp. mycoides SC str. PG1 Mycobacterium leprae TN Corynebacterium glutamicum ATCC 13032 Bifidobacterium bifidum PRL2010 Listeria monocytogenes EGD-e Lactobacillus salivarius UCC118 Bacillus anthracis str. Sterne Bacillus anthracis str. Ames Staphylococcus aureus subsp. aureus NCTC 8325 Staphylococcus epidermidis ATCC 12228 Fusobacterium nucleatum subsp. nucleatum ATCC 25586 Lactobacillus casei ATCC 334 Lactobacillus acidophilus NCFM Deinococcus radiodurans R1 Coxiella burnetii RSA 493 Haemophilus influenzae Rd KW20 Lactobacillus plantarum WCFS1 Salinibacter ruber DSM 13855 Lactococcus lactis subsp. lactis Il1403
Legionella pneumophila subsp. pneumophila str. Philadelphia 1, Salinibacter ruber DSM 13855 and Mycoplasma pneumoniae M129 are the taxon to which approximately the same number of nucleic acid sequences belongs to as that infraspecific name
Legionella pneumophila subsp. pneumophila str. Philadelphia 1 Salinibacter ruber DSM 13855 Mycoplasma pneumoniae M129
action approx
action find_reverse_tuple_counts
relation found in taxon
type infraspecific name
type nucleic acid sequence
action count
action filter_type
action find
entity Lactobacillus acidophilus NCFM
relation found in taxon
type infraspecific name
[{'concept': 'nucleic acid sequence'}, 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?x WHERE { { SELECT DISTINCT ?x ( COUNT ( ?n ) AS ?j ) WHERE { ?x rdf:type ontology:infraspecific_name . ?n rdf:type ontology:nucleic_acid_sequence . ?n property:found_in_taxon ?x } GROUP BY ?x } . { SELECT DISTINCT ( COUNT ( ?w ) AS ?l ) WHERE { ?w rdf:type ontology:infraspecific_name . resource:Lactobacillus_acidophilus_NCFM property:found_in_taxon ?w } } . FILTER ( ?j = ?l ) }
[]
Quantitative Reasoning (Count) (All)
Incomplete count-based ques
Q24149407
Q631147
USER
And what about regulatory protein from bacteriophage origin    ECUMN_1397?
(Q24149407,P703,c(Q631147))
action count
action filter_type
action find
entity Q24149407
relation P703
type Q631147
['Q24149407', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?i ) WHERE { resource:Q24149407 property:P703 ?z . ?z rdf:type ontology:Q631147 }
regulatory protein from bacteriophage origin    ECUMN_1397
action count
action filter_type
action find
entity regulatory protein from bacteriophage origin    ECUMN_1397
relation found in taxon
type infraspecific name
['regulatory protein from bacteriophage origin    ECUMN_1397', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?i ) WHERE { resource:regulatory_protein_from_bacteriophage_origin____ECUMN_1397 property:found_in_taxon ?z . ?z rdf:type ontology:infraspecific_name }
[]
infraspecific name
SYSTEM
1
(Q24149407,P703,c(Q631147))
action count
action filter_type
action find
entity Q24149407
relation P703
type Q631147
[ANSWER]
['Q24149407', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?i ) WHERE { resource:Q24149407 property:P703 ?z . ?z rdf:type ontology:Q631147 }
1
action count
action filter_type
action find
entity regulatory protein from bacteriophage origin    ECUMN_1397
relation found in taxon
type infraspecific name
['regulatory protein from bacteriophage origin    ECUMN_1397', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?i ) WHERE { resource:regulatory_protein_from_bacteriophage_origin____ECUMN_1397 property:found_in_taxon ?z . ?z rdf:type ontology:infraspecific_name }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q181394 Q8386 Q181394
USER
How many nutrients contact around 29 nutrients and drugs ?
(c(Q181394),P129,c(Q181394)|c(Q8386))
action count
action approx
action union
action find_tuple_counts
relation P129
type Q181394
type Q181394
action find_tuple_counts
relation P129
type Q181394
type Q8386
value 29
[{'concept': 'Q181394'}, 'P129', [{'concept': 'Q181394'}, {'concept': 'Q8386'}]]
SELECT DISTINCT ( COUNT ( ?h ) AS ?q ) WHERE { { SELECT DISTINCT ( COUNT ( ?l ) AS ?z ) ?h WHERE { ?l rdf:type ?x . VALUES ( ?x ) { ( ontology:Q181394 ) ( ontology:Q8386 ) } } GROUP BY ?h } . FILTER ( ?z = 29 ) }
action count
action approx
action union
action find_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_tuple_counts
relation physically interacts with
type nutrient
type drug
value 29
[{'concept': 'nutrient'}, 'physically interacts with', [{'concept': 'nutrient'}, {'concept': 'drug'}]]
SELECT DISTINCT ( COUNT ( ?h ) AS ?q ) WHERE { { SELECT DISTINCT ( COUNT ( ?l ) AS ?z ) ?h WHERE { ?l rdf:type ?x . VALUES ( ?x ) { ( ontology:nutrient ) ( ontology:drug ) } } GROUP BY ?h } . FILTER ( ?z = 29 ) }
[]
nutrient drug nutrient
SYSTEM
8
Q7050954 Q287961 Q410142 Q288797 Q415364 Q21110872 Q21108118 Q21115046
(c(Q181394),P129,c(Q181394)|c(Q8386))
action count
action approx
action union
action find_tuple_counts
relation P129
type Q181394
type Q181394
action find_tuple_counts
relation P129
type Q181394
type Q8386
value 29
[ANSWER]
[{'concept': 'Q181394'}, 'P129', [{'concept': 'Q181394'}, {'concept': 'Q8386'}]]
SELECT DISTINCT ( COUNT ( ?h ) AS ?q ) WHERE { { SELECT DISTINCT ( COUNT ( ?l ) AS ?z ) ?h WHERE { ?l rdf:type ?x . VALUES ( ?x ) { ( ontology:Q181394 ) ( ontology:Q8386 ) } } GROUP BY ?h } . FILTER ( ?z = 29 ) }
Sodium-dependent noradrenaline transporter Beta-2 adrenergic receptor Sodium-dependent serotonin transporter 5-hydroxytryptamine receptor 1B Prostaglandin G/H synthase 2 D(3) dopamine receptor 5-hydroxytryptamine receptor 2C 5-hydroxytryptamine receptor 1D
8
action count
action approx
action union
action find_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_tuple_counts
relation physically interacts with
type nutrient
type drug
value 29
[{'concept': 'nutrient'}, 'physically interacts with', [{'concept': 'nutrient'}, {'concept': 'drug'}]]
SELECT DISTINCT ( COUNT ( ?h ) AS ?q ) WHERE { { SELECT DISTINCT ( COUNT ( ?l ) AS ?z ) ?h WHERE { ?l rdf:type ?x . VALUES ( ?x ) { ( ontology:nutrient ) ( ontology:drug ) } } GROUP BY ?h } . FILTER ( ?z = 29 ) }
[]