Simple Question (Direct)
Simple Question
Q21984225
P702
Q863908
USER
What is the gene that encodes Eukaryotic translation initiation factor 2-alpha kinase 1 ?
(Q21984225,P702,c(Q863908))
action filter_type
action find
entity Q21984225
relation P702
type Q863908
['Q21984225', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?w WHERE { resource:Q21984225 property:P702 ?w . ?w rdf:type ontology:Q863908 }
Eukaryotic translation initiation factor 2-alpha kinase 1
action filter_type
action find
entity Eukaryotic translation initiation factor 2-alpha kinase 1
relation encoded by
type nucleic acid sequence
['Eukaryotic translation initiation factor 2-alpha kinase 1', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?w WHERE { resource:Eukaryotic_translation_initiation_factor_2-alpha_kinase_1 property:encoded_by ?w . ?w rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18251318
SYSTEM
Eif2ak1
Q18251318
(Q21984225,P702,c(Q863908))
action filter_type
action find
entity Q21984225
relation P702
type Q863908
[ANSWER]
['Q21984225', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?w WHERE { resource:Q21984225 property:P702 ?w . ?w rdf:type ontology:Q863908 }
Eif2ak1
Eif2ak1
action filter_type
action find
entity Eukaryotic translation initiation factor 2-alpha kinase 1
relation encoded by
type nucleic acid sequence
['Eukaryotic translation initiation factor 2-alpha kinase 1', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?w WHERE { resource:Eukaryotic_translation_initiation_factor_2-alpha_kinase_1 property:encoded_by ?w . ?w rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18251318
P684
Q863908
USER
Which nucleic acid sequence is an orthologous gene for that one ?
(Q18251318,P684,c(Q863908))
action filter_type
action find
entity Q18251318
relation P684
type Q863908
['Q18251318', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:Q863908 . resource:Q18251318 property:P684 ?u }
Eif2ak1
action filter_type
action find
entity Eif2ak1
relation ortholog
type nucleic acid sequence
['Eif2ak1', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:nucleic_acid_sequence . resource:Eif2ak1 property:ortholog ?u }
[]
nucleic acid sequence
Q18038611
SYSTEM
EIF2AK1
Q18038611
(Q18251318,P684,c(Q863908))
action filter_type
action find
entity Q18251318
relation P684
type Q863908
[ANSWER]
['Q18251318', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:Q863908 . resource:Q18251318 property:P684 ?u }
EIF2AK1
EIF2AK1
action filter_type
action find
entity Eif2ak1
relation ortholog
type nucleic acid sequence
['Eif2ak1', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:nucleic_acid_sequence . resource:Eif2ak1 property:ortholog ?u }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q181394 Q8386 Q79529
USER
How many nutrients do exactly 4 drugs and chemical substances interact with ?
(c(Q8386)|c(Q79529),P129,c(Q181394))
action count
action equal
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
value 4
[[{'concept': 'Q8386'}, {'concept': 'Q79529'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?m ) AS ?l ) WHERE { { SELECT DISTINCT ( COUNT ( ?j ) AS ?b ) ?m WHERE { ?j rdf:type ?t . VALUES ( ?t ) { ( ontology:Q8386 ) ( ontology:Q79529 ) } } GROUP BY ?m } . FILTER ( ?b = 4 ) }
action count
action equal
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
value 4
[[{'concept': 'drug'}, {'concept': 'chemical substance'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?m ) AS ?l ) WHERE { { SELECT DISTINCT ( COUNT ( ?j ) AS ?b ) ?m WHERE { ?j rdf:type ?t . VALUES ( ?t ) { ( ontology:drug ) ( ontology:chemical_substance ) } } GROUP BY ?m } . FILTER ( ?b = 4 ) }
[]
nutrient drug chemical substance
SYSTEM
56
Q21982207 Q21108695 Q905729 Q21120424 Q6155969 Q21147674 Q21118071 Q7553281 Q5500227 Q21108402 Q21136123 Q415976 Q254943 Q6414726 Q21982210 Q21120458 Q21102511 Q21119575 Q417801 Q21173310 Q7390898 Q4822491 Q7799753 Q21109298 Q21109354 Q21108785 Q21118072 Q21114845 Q21119156 Q21119157 Q6590408 Q21100975 Q1085078 Q21126833 Q418404 Q21102075 Q6449561 Q7799751 Q5446453 Q408572 Q21982979 Q3162114 Q3415811 Q21172800 Q285613 Q904241 Q21114850 Q21174141 Q7119501 Q6592976 Q21157551 Q7120338 Q21103162 Q6155967 Q21100360 Q21984383
(c(Q8386)|c(Q79529),P129,c(Q181394))
action count
action equal
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
value 4
[ANSWER]
[[{'concept': 'Q8386'}, {'concept': 'Q79529'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?m ) AS ?l ) WHERE { { SELECT DISTINCT ( COUNT ( ?j ) AS ?b ) ?m WHERE { ?j rdf:type ?t . VALUES ( ?t ) { ( ontology:Q8386 ) ( ontology:Q79529 ) } } GROUP BY ?m } . FILTER ( ?b = 4 ) }
Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 G-protein coupled receptor 84 Prostaglandin D2 receptor Prostaglandin E2 receptor EP2 subtype Tyrosine-protein kinase JAK3 Estrogen-related receptor gamma Steroid hormone receptor ERR2 Solute carrier family 12 member 3 Free fatty acid receptor 3 Chloride channel protein 2 Solute carrier organic anion transporter family member 2B1 Proto-oncogene tyrosine-protein kinase receptor Ret Retinoic acid receptor alpha ATP-sensitive inward rectifier potassium channel 11 Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1 Proteasome subunit beta type-5 Platelet-derived growth factor receptor alpha P2Y purinoceptor 1 Extracellular calcium-sensing receptor Endothelin B receptor Sodium/glucose cotransporter 2 Aurora kinase B Thyroid hormone receptor beta Protein kinase C epsilon type Proto-oncogene tyrosine-protein kinase Src Potassium voltage-gated channel subfamily KQT member 4 Steroid hormone receptor ERR1 Protein kinase C gamma type Inosine-5'-monophosphate dehydrogenase 2 Inosine-5'-monophosphate dehydrogenase 1 Metabotropic glutamate receptor 8 Macrophage colony-stimulating factor 1 receptor Bile acid receptor Polycystic kidney disease 2-like 1 protein C-C chemokine receptor type 5 Acid-sensing ion channel 1 Potassium voltage-gated channel subfamily KQT member 2 Thyroid hormone receptor alpha Fibroblast growth factor receptor 1 Sigma non-opioid intracellular receptor 1 Alpha-1B adrenergic receptor Tyrosine-protein kinase JAK2 Ryanodine receptor 2 Free fatty acid receptor 4 Serine/threonine-protein kinase mTOR Sodium/glucose cotransporter 1 Protein kinase C beta type Prostaglandin D2 receptor 2 Protein kinase C alpha type Retinoic acid receptor beta Histone deacetylase 10 Protein kinase C delta type Glycine receptor subunit beta Tyrosine-protein kinase JAK1 Dual specificity mitogen-activated protein kinase kinase 1 Voltage-dependent L-type calcium channel subunit alpha-1F
56
action count
action equal
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
value 4
[[{'concept': 'drug'}, {'concept': 'chemical substance'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?m ) AS ?l ) WHERE { { SELECT DISTINCT ( COUNT ( ?j ) AS ?b ) ?m WHERE { ?j rdf:type ?t . VALUES ( ?t ) { ( ontology:drug ) ( ontology:chemical_substance ) } } GROUP BY ?m } . FILTER ( ?b = 4 ) }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q18038611
P703
Q16521
USER
Where is EIF2AK1 found ?
(Q18038611,P703,c(Q16521))
action filter_type
action find
entity Q18038611
relation P703
type Q16521
['Q18038611', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?e WHERE { resource:Q18038611 property:P703 ?e . ?e rdf:type ontology:Q16521 }
EIF2AK1
action filter_type
action find
entity EIF2AK1
relation found in taxon
type taxon
['EIF2AK1', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?e WHERE { resource:EIF2AK1 property:found_in_taxon ?e . ?e rdf:type ontology:taxon }
[]
taxon
Q15978631
SYSTEM
Homo sapiens
Q15978631
(Q18038611,P703,c(Q16521))
action filter_type
action find
entity Q18038611
relation P703
type Q16521
[ANSWER]
['Q18038611', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?e WHERE { resource:Q18038611 property:P703 ?e . ?e rdf:type ontology:Q16521 }
Homo sapiens
Homo sapiens
action filter_type
action find
entity EIF2AK1
relation found in taxon
type taxon
['EIF2AK1', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?e WHERE { resource:EIF2AK1 property:found_in_taxon ?e . ?e rdf:type ontology:taxon }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q15978631 Q23548653
P703
Q181394
USER
Is RecA protein    smi_1839 a part of the taxon that one ?
(Q23548653,P703,Q15978631)
action is_in
entity Q23548653
action find
entity Q15978631
relation P703
['Q23548653', 'P703', 'Q15978631']
ASK WHERE { resource:Q15978631 property:P703 resource:Q23548653 }
Homo sapiens RecA protein    smi_1839
action is_in
entity RecA protein    smi_1839
action find
entity Homo sapiens
relation found in taxon
['RecA protein    smi_1839', 'found in taxon', 'Homo sapiens']
ASK WHERE { resource:Homo_sapiens property:found_in_taxon resource:RecA_protein____smi_1839 }
[]
nutrient
SYSTEM
NO
(Q23548653,P703,Q15978631)
action is_in
entity Q23548653
action find
entity Q15978631
relation P703
[ANSWER]
['Q23548653', 'P703', 'Q15978631']
ASK WHERE { resource:Q15978631 property:P703 resource:Q23548653 }
No
action is_in
entity RecA protein    smi_1839
action find
entity Homo sapiens
relation found in taxon
['RecA protein    smi_1839', 'found in taxon', 'Homo sapiens']
ASK WHERE { resource:Homo_sapiens property:found_in_taxon resource:RecA_protein____smi_1839 }
[]