Simple Question (Direct)
Simple Question
Q21989091
P681
Q15989253
USER
Which parts are the components of E3 ubiquitin-protein ligase RNF114 ?
(Q21989091,P681,c(Q15989253))
action filter_type
action find
entity Q21989091
relation P681
type Q15989253
['Q21989091', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:Q15989253 . resource:Q21989091 property:P681 ?x }
E3 ubiquitin-protein ligase RNF114
action filter_type
action find
entity E3 ubiquitin-protein ligase RNF114
relation cell component
type part
['E3 ubiquitin-protein ligase RNF114', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:part . resource:E3_ubiquitin-protein_ligase_RNF114 property:cell_component ?x }
[]
part
Q79899 Q40260
SYSTEM
cytoplasm, nucleus
Q79899 Q40260
(Q21989091,P681,c(Q15989253))
action filter_type
action find
entity Q21989091
relation P681
type Q15989253
[ANSWERS] are the components of E3 ubiquitin-protein ligase RNF114
['Q21989091', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:Q15989253 . resource:Q21989091 property:P681 ?x }
cytoplasm nucleus
Cytoplasm and nucleus are the components of E3 ubiquitin-protein ligase RNF114
cytoplasm nucleus
action filter_type
action find
entity E3 ubiquitin-protein ligase RNF114
relation cell component
type part
['E3 ubiquitin-protein ligase RNF114', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:part . resource:E3_ubiquitin-protein_ligase_RNF114 property:cell_component ?x }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21989091
P702
Q863908
USER
What encodes E3 ubiquitin-protein ligase RNF114 ?
(Q21989091,P702,c(Q863908))
action filter_type
action find
entity Q21989091
relation P702
type Q863908
['Q21989091', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?u WHERE { resource:Q21989091 property:P702 ?u . ?u rdf:type ontology:Q863908 }
E3 ubiquitin-protein ligase RNF114
action filter_type
action find
entity E3 ubiquitin-protein ligase RNF114
relation encoded by
type nucleic acid sequence
['E3 ubiquitin-protein ligase RNF114', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?u WHERE { resource:E3_ubiquitin-protein_ligase_RNF114 property:encoded_by ?u . ?u rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18269782
SYSTEM
Rnf114
Q18269782
(Q21989091,P702,c(Q863908))
action filter_type
action find
entity Q21989091
relation P702
type Q863908
[ANSWER] encodes E3 ubiquitin-protein ligase RNF114
['Q21989091', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?u WHERE { resource:Q21989091 property:P702 ?u . ?u rdf:type ontology:Q863908 }
Rnf114
Rnf114 encodes E3 ubiquitin-protein ligase RNF114
Rnf114
action filter_type
action find
entity E3 ubiquitin-protein ligase RNF114
relation encoded by
type nucleic acid sequence
['E3 ubiquitin-protein ligase RNF114', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?u WHERE { resource:E3_ubiquitin-protein_ligase_RNF114 property:encoded_by ?u . ?u rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q24118603
Q863908
USER
And what about 4-hydroxybenzoyl CoA thioesterase    BN112_4010?
(Q24118603,P702,c(Q863908))
action filter_type
action find
entity Q24118603
relation P702
type Q863908
['Q24118603', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?f WHERE { resource:Q24118603 property:P702 ?f . ?f rdf:type ontology:Q863908 }
4-hydroxybenzoyl CoA thioesterase    BN112_4010
action filter_type
action find
entity 4-hydroxybenzoyl CoA thioesterase    BN112_4010
relation encoded by
type nucleic acid sequence
['4-hydroxybenzoyl CoA thioesterase    BN112_4010', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?f WHERE { resource:4-hydroxybenzoyl_CoA_thioesterase____BN112_4010 property:encoded_by ?f . ?f rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23318482
SYSTEM
4-hydroxybenzoyl CoA thioesterase    BN112_4010
Q23318482
(Q24118603,P702,c(Q863908))
action filter_type
action find
entity Q24118603
relation P702
type Q863908
[ANSWER]
['Q24118603', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?f WHERE { resource:Q24118603 property:P702 ?f . ?f rdf:type ontology:Q863908 }
4-hydroxybenzoyl CoA thioesterase    BN112_4010
4-hydroxybenzoyl CoA thioesterase    BN112_4010
action filter_type
action find
entity 4-hydroxybenzoyl CoA thioesterase    BN112_4010
relation encoded by
type nucleic acid sequence
['4-hydroxybenzoyl CoA thioesterase    BN112_4010', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?f WHERE { resource:4-hydroxybenzoyl_CoA_thioesterase____BN112_4010 property:encoded_by ?f . ?f rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q24118603
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(c(Q863908),P688,Q23318482)
action filter_type
action find_reverse
entity Q24118603
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q23318482']
SELECT DISTINCT ?d WHERE { ?d rdf:type ontology:Q863908 . ?d property:P688 resource:Q24118603 }
4-hydroxybenzoyl CoA thioesterase    BN112_4010
action filter_type
action find_reverse
entity 4-hydroxybenzoyl CoA thioesterase    BN112_4010
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', '4-hydroxybenzoyl CoA thioesterase    BN112_4010']
SELECT DISTINCT ?d WHERE { ?d rdf:type ontology:nucleic_acid_sequence . ?d property:encodes resource:4-hydroxybenzoyl_CoA_thioesterase____BN112_4010 }
[]
nucleic acid sequence
Q23318482
SYSTEM
4-hydroxybenzoyl CoA thioesterase    BN112_4010
Q23318482
(c(Q863908),P688,Q23318482)
action filter_type
action find_reverse
entity Q24118603
relation P688
type Q863908
4-hydroxybenzoyl CoA thioesterase BN112 4010 encodes that nutrient
[{'concept': 'Q863908'}, 'P688', 'Q23318482']
SELECT DISTINCT ?d WHERE { ?d rdf:type ontology:Q863908 . ?d property:P688 resource:Q24118603 }
4-hydroxybenzoyl CoA thioesterase    BN112_4010
4-hydroxybenzoyl CoA thioesterase BN112 4010 encodes that nutrient
4-hydroxybenzoyl CoA thioesterase    BN112_4010
action filter_type
action find_reverse
entity 4-hydroxybenzoyl CoA thioesterase    BN112_4010
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', '4-hydroxybenzoyl CoA thioesterase    BN112_4010']
SELECT DISTINCT ?d WHERE { ?d rdf:type ontology:nucleic_acid_sequence . ?d property:encodes resource:4-hydroxybenzoyl_CoA_thioesterase____BN112_4010 }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q23318482 Q24118603
P702
Q181394
USER
Is 4-hydroxybenzoyl CoA thioesterase    BN112_4010 the gene that is encoded by that nucleic acid sequence ?
(Q24118603,P702,Q23318482)
action is_in
entity Q23318482
action find
entity Q24118603
relation P702
['Q24118603', 'P702', 'Q23318482']
ASK WHERE { resource:Q24118603 property:P702 resource:Q23318482 }
4-hydroxybenzoyl CoA thioesterase    BN112_4010 4-hydroxybenzoyl CoA thioesterase    BN112_4010
action is_in
entity 4-hydroxybenzoyl CoA thioesterase    BN112_4010
action find
entity 4-hydroxybenzoyl CoA thioesterase    BN112_4010
relation encoded by
['4-hydroxybenzoyl CoA thioesterase    BN112_4010', 'encoded by', '4-hydroxybenzoyl CoA thioesterase    BN112_4010']
ASK WHERE { resource:4-hydroxybenzoyl_CoA_thioesterase____BN112_4010 property:encoded_by resource:4-hydroxybenzoyl_CoA_thioesterase____BN112_4010 }
[]
nutrient
SYSTEM
YES
(Q24118603,P702,Q23318482)
action is_in
entity Q23318482
action find
entity Q24118603
relation P702
[ANSWER]
['Q24118603', 'P702', 'Q23318482']
ASK WHERE { resource:Q24118603 property:P702 resource:Q23318482 }
Yes
action is_in
entity 4-hydroxybenzoyl CoA thioesterase    BN112_4010
action find
entity 4-hydroxybenzoyl CoA thioesterase    BN112_4010
relation encoded by
['4-hydroxybenzoyl CoA thioesterase    BN112_4010', 'encoded by', '4-hydroxybenzoyl CoA thioesterase    BN112_4010']
ASK WHERE { resource:4-hydroxybenzoyl_CoA_thioesterase____BN112_4010 property:encoded_by resource:4-hydroxybenzoyl_CoA_thioesterase____BN112_4010 }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q21116031 Q21989091
P680
Q44424
USER
Which chemical bonds represents the molecular function of E3 ubiquitin-protein ligase RNF114 or Isocitrate dehydrogenase [NADP], mitochondrial ?
OR((Q21989091,P680,c(Q44424)), (Q21116031,P680,c(Q44424)))
action filter_type
action union
action find
entity Q21989091
relation P680
action find
entity Q21116031
relation P680
type Q44424
{'OR': [['Q21989091', 'P680', {'concept': 'Q44424'}], ['Q21116031', 'P680', {'concept': 'Q44424'}]]}
SELECT DISTINCT ?e WHERE { { { resource:Q21989091 property:P680 ?e } UNION { resource:Q21116031 property:P680 ?e } } . ?e rdf:type ontology:Q44424 }
Isocitrate dehydrogenase [NADP], mitochondrial E3 ubiquitin-protein ligase RNF114
action filter_type
action union
action find
entity E3 ubiquitin-protein ligase RNF114
relation molecular function
action find
entity Isocitrate dehydrogenase [NADP], mitochondrial
relation molecular function
type chemical bond
{'OR': [['E3 ubiquitin-protein ligase RNF114', 'molecular function', {'concept': 'chemical bond'}], ['Isocitrate dehydrogenase [NADP], mitochondrial', 'molecular function', {'concept': 'chemical bond'}]]}
SELECT DISTINCT ?e WHERE { { { resource:E3_ubiquitin-protein_ligase_RNF114 property:molecular_function ?e } UNION { resource:Isocitrate_dehydrogenase_[NADP],_mitochondrial property:molecular_function ?e } } . ?e rdf:type ontology:chemical_bond }
[]
chemical bond
Q14633865 Q13667380 Q14860850
SYSTEM
zinc ion binding, metal ion binding, magnesium ion binding
Q14633865 Q13667380 Q14860850
OR((Q21989091,P680,c(Q44424)), (Q21116031,P680,c(Q44424)))
action filter_type
action union
action find
entity Q21989091
relation P680
action find
entity Q21116031
relation P680
type Q44424
[ANSWERS] represent the molecular function of E3 ubiquitin-protein ligase RNF114 or Isocitrate dehydrogenase [NADP], mitochondrial
{'OR': [['Q21989091', 'P680', {'concept': 'Q44424'}], ['Q21116031', 'P680', {'concept': 'Q44424'}]]}
SELECT DISTINCT ?e WHERE { { { resource:Q21989091 property:P680 ?e } UNION { resource:Q21116031 property:P680 ?e } } . ?e rdf:type ontology:Q44424 }
zinc ion binding metal ion binding magnesium ion binding
Zinc ion binding, metal ion binding and magnesium ion binding represent the molecular function of E3 ubiquitin-protein ligase RNF114 or Isocitrate dehydrogenase [NADP], mitochondrial
zinc ion binding metal ion binding magnesium ion binding
action filter_type
action union
action find
entity E3 ubiquitin-protein ligase RNF114
relation molecular function
action find
entity Isocitrate dehydrogenase [NADP], mitochondrial
relation molecular function
type chemical bond
{'OR': [['E3 ubiquitin-protein ligase RNF114', 'molecular function', {'concept': 'chemical bond'}], ['Isocitrate dehydrogenase [NADP], mitochondrial', 'molecular function', {'concept': 'chemical bond'}]]}
SELECT DISTINCT ?e WHERE { { { resource:E3_ubiquitin-protein_ligase_RNF114 property:molecular_function ?e } UNION { resource:Isocitrate_dehydrogenase_[NADP],_mitochondrial property:molecular_function ?e } } . ?e rdf:type ontology:chemical_bond }
[]
Verification (Boolean) (All)
Verification|one entity, multiple entities (as object) referred indirectly
Q21120685
P680
Q181394
USER
Are Intestinal-type alkaline phosphatase the gene that have those chemical bonds as the molecular function ?
(Q21120685,P680,Q14633865) (Q21120685,P680,Q13667380) (Q21120685,P680,Q14860850)
action is_in
entity prev_answer
action find
entity Q21120685
relation P680
['Q21120685', 'P680', 'Q14633865'] ['Q21120685', 'P680', 'Q13667380'] ['Q21120685', 'P680', 'Q14860850']
ASK WHERE { resource:Q21120685 property:P680 ?e . VALUES ( ?e ) { ( resource:Q14633865 ) ( resource:Q13667380 ) ( resource:Q14860850 ) } }
Intestinal-type alkaline phosphatase
action is_in
entity prev_answer
action find
entity Intestinal-type alkaline phosphatase
relation molecular function
['Intestinal-type alkaline phosphatase', 'molecular function', 'zinc ion binding'] ['Intestinal-type alkaline phosphatase', 'molecular function', 'metal ion binding'] ['Intestinal-type alkaline phosphatase', 'molecular function', 'magnesium ion binding']
ASK WHERE { resource:Intestinal-type_alkaline_phosphatase property:molecular_function ?e . VALUES ( ?e ) { ( resource:zinc_ion_binding ) ( resource:metal_ion_binding ) ( resource:magnesium_ion_binding ) } }
[]
nutrient
SYSTEM
YES
(Q21120685,P680,Q14633865) (Q21120685,P680,Q13667380) (Q21120685,P680,Q14860850)
action is_in
entity prev_answer
action find
entity Q21120685
relation P680
[ANSWER]
['Q21120685', 'P680', 'Q14633865'] ['Q21120685', 'P680', 'Q13667380'] ['Q21120685', 'P680', 'Q14860850']
ASK WHERE { resource:Q21120685 property:P680 ?e . VALUES ( ?e ) { ( resource:Q14633865 ) ( resource:Q13667380 ) ( resource:Q14860850 ) } }
Yes
action is_in
entity prev_answer
action find
entity Intestinal-type alkaline phosphatase
relation molecular function
['Intestinal-type alkaline phosphatase', 'molecular function', 'zinc ion binding'] ['Intestinal-type alkaline phosphatase', 'molecular function', 'metal ion binding'] ['Intestinal-type alkaline phosphatase', 'molecular function', 'magnesium ion binding']
ASK WHERE { resource:Intestinal-type_alkaline_phosphatase property:molecular_function ?e . VALUES ( ?e ) { ( resource:zinc_ion_binding ) ( resource:metal_ion_binding ) ( resource:magnesium_ion_binding ) } }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21120685
P682
Q3249551
USER
Which process is that nutrient involved in ?
action filter_type
action find
entity Q21120685
relation P682
type Q3249551
SELECT DISTINCT ?u WHERE { resource:Q21120685 property:P682 ?u . ?u rdf:type ontology:Q3249551 }
Intestinal-type alkaline phosphatase
action filter_type
action find
entity Intestinal-type alkaline phosphatase
relation biological process
type process
SELECT DISTINCT ?u WHERE { resource:Intestinal-type_alkaline_phosphatase property:biological_process ?u . ?u rdf:type ontology:process }
[]
process
Q1057
SYSTEM
metabolic process
Q1057
action filter_type
action find
entity Q21120685
relation P682
type Q3249551
That nutrient is involved in [ANSWER]
SELECT DISTINCT ?u WHERE { resource:Q21120685 property:P682 ?u . ?u rdf:type ontology:Q3249551 }
metabolic process
That nutrient is involved in metabolic process
metabolic process
action filter_type
action find
entity Intestinal-type alkaline phosphatase
relation biological process
type process
SELECT DISTINCT ?u WHERE { resource:Intestinal-type_alkaline_phosphatase property:biological_process ?u . ?u rdf:type ontology:process }
[]