Simple Question (Direct)
Simple Question
Q21121645
P682
Q3249551
USER
Which process is Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB involved in ?
(Q21121645,P682,c(Q3249551))
action filter_type
action find
entity Q21121645
relation P682
type Q3249551
['Q21121645', 'P682', {'concept': 'Q3249551'}]
SELECT DISTINCT ?a WHERE { resource:Q21121645 property:P682 ?a . ?a rdf:type ontology:Q3249551 }
Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB
action filter_type
action find
entity Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB
relation biological process
type process
['Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB', 'biological process', {'concept': 'process'}]
SELECT DISTINCT ?a WHERE { resource:Mannosyl-oligosaccharide_1,2-alpha-mannosidase_IB property:biological_process ?a . ?a rdf:type ontology:process }
[]
process
Q1057
SYSTEM
metabolic process
Q1057
(Q21121645,P682,c(Q3249551))
action filter_type
action find
entity Q21121645
relation P682
type Q3249551
[ANSWER] is Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB involved in
['Q21121645', 'P682', {'concept': 'Q3249551'}]
SELECT DISTINCT ?a WHERE { resource:Q21121645 property:P682 ?a . ?a rdf:type ontology:Q3249551 }
metabolic process
Metabolic process is Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB involved in
metabolic process
action filter_type
action find
entity Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB
relation biological process
type process
['Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB', 'biological process', {'concept': 'process'}]
SELECT DISTINCT ?a WHERE { resource:Mannosyl-oligosaccharide_1,2-alpha-mannosidase_IB property:biological_process ?a . ?a rdf:type ontology:process }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21121645
P688
Q863908
USER
What is the nucleic acid sequence that is encoded by Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB ?
(c(Q863908),P688,Q21121645)
action filter_type
action find_reverse
entity Q21121645
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q21121645']
SELECT DISTINCT ?o WHERE { ?o property:P688 resource:Q21121645 . ?o rdf:type ontology:Q863908 }
Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB
action filter_type
action find_reverse
entity Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB']
SELECT DISTINCT ?o WHERE { ?o property:encodes resource:Mannosyl-oligosaccharide_1,2-alpha-mannosidase_IB . ?o rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18035936
SYSTEM
MAN1A2
Q18035936
(c(Q863908),P688,Q21121645)
action filter_type
action find_reverse
entity Q21121645
relation P688
type Q863908
The nucleic acid sequence that is encoded by Mannosyl-oligosaccharide 1,2-alpha -mannosidase is the [ANSWER]
[{'concept': 'Q863908'}, 'P688', 'Q21121645']
SELECT DISTINCT ?o WHERE { ?o property:P688 resource:Q21121645 . ?o rdf:type ontology:Q863908 }
MAN1A2
The nucleic acid sequence that is encoded by Mannosyl-oligosaccharide 1,2-alpha -mannosidase is the MAN1A2
MAN1A2
action filter_type
action find_reverse
entity Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB']
SELECT DISTINCT ?o WHERE { ?o property:encodes resource:Mannosyl-oligosaccharide_1,2-alpha-mannosidase_IB . ?o rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18035936
P684
Q863908
USER
Which nucleic acid sequence is that one an orthlogous gene of ?
(c(Q863908),P684,Q18035936)
action filter_type
action find
entity Q18035936
relation P684
type Q863908
[{'concept': 'Q863908'}, 'P684', 'Q18035936']
SELECT DISTINCT ?z WHERE { resource:Q18035936 property:P684 ?z . ?z rdf:type ontology:Q863908 }
MAN1A2
action filter_type
action find
entity MAN1A2
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'MAN1A2']
SELECT DISTINCT ?z WHERE { resource:MAN1A2 property:ortholog ?z . ?z rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18252195
SYSTEM
Man1a2
Q18252195
(c(Q863908),P684,Q18035936)
action filter_type
action find
entity Q18035936
relation P684
type Q863908
[ANSWER] is that one an orthlogous gene of
[{'concept': 'Q863908'}, 'P684', 'Q18035936']
SELECT DISTINCT ?z WHERE { resource:Q18035936 property:P684 ?z . ?z rdf:type ontology:Q863908 }
Man1a2
Man1a2 is that one an orthlogous gene of
Man1a2
action filter_type
action find
entity MAN1A2
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'MAN1A2']
SELECT DISTINCT ?z WHERE { resource:MAN1A2 property:ortholog ?z . ?z rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q18035936
P703
Q16521
USER
Where is MAN1A2 found ?
(Q18035936,P703,c(Q16521))
action filter_type
action find
entity Q18035936
relation P703
type Q16521
['Q18035936', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?j WHERE { resource:Q18035936 property:P703 ?j . ?j rdf:type ontology:Q16521 }
MAN1A2
action filter_type
action find
entity MAN1A2
relation found in taxon
type taxon
['MAN1A2', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?j WHERE { resource:MAN1A2 property:found_in_taxon ?j . ?j rdf:type ontology:taxon }
[]
taxon
Q15978631
SYSTEM
Homo sapiens
Q15978631
(Q18035936,P703,c(Q16521))
action filter_type
action find
entity Q18035936
relation P703
type Q16521
MAN1 A2 is found in [ANSWER]
['Q18035936', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?j WHERE { resource:Q18035936 property:P703 ?j . ?j rdf:type ontology:Q16521 }
Homo sapiens
MAN1 A2 is found in Homo sapiens
Homo sapiens
action filter_type
action find
entity MAN1A2
relation found in taxon
type taxon
['MAN1A2', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?j WHERE { resource:MAN1A2 property:found_in_taxon ?j . ?j rdf:type ontology:taxon }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Logical operators
Q15978631
P703
Q36534 Q8047
USER
How many chemical reactions and enzymes are found in the taxon Homo sapiens ?
(c(Q36534),P703,Q15978631) (c(Q8047),P703,Q15978631)
action count
action union
action filter_type
action find_reverse
entity Q15978631
relation P703
type Q36534
action filter_type
action find_reverse
entity Q15978631
relation P703
type Q8047
[{'concept': 'Q36534'}, 'P703', 'Q15978631'] [{'concept': 'Q8047'}, 'P703', 'Q15978631']
SELECT DISTINCT ( COUNT ( ?t ) AS ?m ) WHERE { { ?t property:P703 resource:Q15978631 . ?t rdf:type ontology:Q36534 } UNION { ?t property:P703 resource:Q15978631 . ?t rdf:type ontology:Q8047 } }
Homo sapiens
action count
action union
action filter_type
action find_reverse
entity Homo sapiens
relation found in taxon
type chemical reaction
action filter_type
action find_reverse
entity Homo sapiens
relation found in taxon
type enzyme
[{'concept': 'chemical reaction'}, 'found in taxon', 'Homo sapiens'] [{'concept': 'enzyme'}, 'found in taxon', 'Homo sapiens']
SELECT DISTINCT ( COUNT ( ?t ) AS ?m ) WHERE { { ?t property:found_in_taxon resource:Homo_sapiens . ?t rdf:type ontology:chemical_reaction } UNION { ?t property:found_in_taxon resource:Homo_sapiens . ?t rdf:type ontology:enzyme } }
[]
chemical reaction enzyme
SYSTEM
1 chemical reactions and 10 enzymes
Q3266762 Q6948002 Q6948034 Q6714398 Q2813814 Q27436670 Q6930569 Q6714400 Q7119388 Q6718496 Q6718498
(c(Q36534),P703,Q15978631) (c(Q8047),P703,Q15978631)
action count
action union
action filter_type
action find_reverse
entity Q15978631
relation P703
type Q36534
action filter_type
action find_reverse
entity Q15978631
relation P703
type Q8047
[ANSWER]
[{'concept': 'Q36534'}, 'P703', 'Q15978631'] [{'concept': 'Q8047'}, 'P703', 'Q15978631']
SELECT DISTINCT ( COUNT ( ?t ) AS ?m ) WHERE { { ?t property:P703 resource:Q15978631 . ?t rdf:type ontology:Q36534 } UNION { ?t property:P703 resource:Q15978631 . ?t rdf:type ontology:Q8047 } }
nicotinamide N-methyltransferase Myophosphorylase Myosin light-chain kinase MAPK12 2-hydroxyphytanoyl-CoA lyase TCA Cycle MuSK protein MAPK13 PIK3R4 MTORC2 MTORC1
1 chemical reactions and 10 enzymes
action count
action union
action filter_type
action find_reverse
entity Homo sapiens
relation found in taxon
type chemical reaction
action filter_type
action find_reverse
entity Homo sapiens
relation found in taxon
type enzyme
[{'concept': 'chemical reaction'}, 'found in taxon', 'Homo sapiens'] [{'concept': 'enzyme'}, 'found in taxon', 'Homo sapiens']
SELECT DISTINCT ( COUNT ( ?t ) AS ?m ) WHERE { { ?t property:found_in_taxon resource:Homo_sapiens . ?t rdf:type ontology:chemical_reaction } UNION { ?t property:found_in_taxon resource:Homo_sapiens . ?t rdf:type ontology:enzyme } }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Single entity type
Q1499421
P566
Q82799 Q16521
USER
How many names are a basionyms of less number of taxons than Acacia xanthophloea ?
(c(Q16521),P566,c(Q82799))
action count
action less
action find_reverse_tuple_counts
relation P566
type Q82799
type Q16521
action count
action filter_type
action find_reverse
entity Q1499421
relation P566
type Q16521
[{'concept': 'Q16521'}, 'P566', {'concept': 'Q82799'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?s ) WHERE { { SELECT DISTINCT ( COUNT ( ?g ) AS ?e ) WHERE { ?g rdf:type ontology:Q16521 . ?g property:P566 resource:Q1499421 } } . FILTER ( ?n < ?e ) . { SELECT DISTINCT ?z ( COUNT ( ?q ) AS ?n ) WHERE { ?z rdf:type ontology:Q82799 . ?q rdf:type ontology:Q16521 . ?q property:P566 ?z } GROUP BY ?z } }
Acacia xanthophloea
action count
action less
action find_reverse_tuple_counts
relation basionym
type name
type taxon
action count
action filter_type
action find_reverse
entity Acacia xanthophloea
relation basionym
type taxon
[{'concept': 'taxon'}, 'basionym', {'concept': 'name'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?s ) WHERE { { SELECT DISTINCT ( COUNT ( ?g ) AS ?e ) WHERE { ?g rdf:type ontology:taxon . ?g property:basionym resource:Acacia_xanthophloea } } . FILTER ( ?n < ?e ) . { SELECT DISTINCT ?z ( COUNT ( ?q ) AS ?n ) WHERE { ?z rdf:type ontology:name . ?q rdf:type ontology:taxon . ?q property:basionym ?z } GROUP BY ?z } }
[]
name taxon
SYSTEM
11
Q12954907 Q22915049 Q7226458 Q159107 Q157851 Q15250904 Q16484730 Q7170299 Q11099680 Q15629400 Q134609
(c(Q16521),P566,c(Q82799))
action count
action less
action find_reverse_tuple_counts
relation P566
type Q82799
type Q16521
action count
action filter_type
action find_reverse
entity Q1499421
relation P566
type Q16521
[ANSWER]
[{'concept': 'Q16521'}, 'P566', {'concept': 'Q82799'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?s ) WHERE { { SELECT DISTINCT ( COUNT ( ?g ) AS ?e ) WHERE { ?g rdf:type ontology:Q16521 . ?g property:P566 resource:Q1499421 } } . FILTER ( ?n < ?e ) . { SELECT DISTINCT ?z ( COUNT ( ?q ) AS ?n ) WHERE { ?z rdf:type ontology:Q82799 . ?q rdf:type ontology:Q16521 . ?q property:P566 ?z } GROUP BY ?z } }
Polygonum bistorta Polianthes michoacana Polygonum cespitosum Hieracium aurantiacum Glaux maritima Polygonum manshuriense Abutilon striatum Persicaria affinis Polygonum perfoliatum Dimorphotheca ecklonis Cynara scolymus
11
action count
action less
action find_reverse_tuple_counts
relation basionym
type name
type taxon
action count
action filter_type
action find_reverse
entity Acacia xanthophloea
relation basionym
type taxon
[{'concept': 'taxon'}, 'basionym', {'concept': 'name'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?s ) WHERE { { SELECT DISTINCT ( COUNT ( ?g ) AS ?e ) WHERE { ?g rdf:type ontology:taxon . ?g property:basionym resource:Acacia_xanthophloea } } . FILTER ( ?n < ?e ) . { SELECT DISTINCT ?z ( COUNT ( ?q ) AS ?n ) WHERE { ?z rdf:type ontology:name . ?q rdf:type ontology:taxon . ?q property:basionym ?z } GROUP BY ?z } }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q22289533 Q18252195
P688
Q181394
USER
Which nutrients are Man1a2 or batA protein    TDE1250 an encoding of ?
OR((Q18252195,P688,c(Q181394)), (Q22289533,P688,c(Q181394)))
action filter_type
action union
action find
entity Q18252195
relation P688
action find
entity Q22289533
relation P688
type Q181394
{'OR': [['Q18252195', 'P688', {'concept': 'Q181394'}], ['Q22289533', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?r WHERE { ?r rdf:type ontology:Q181394 . { ?w property:P688 ?r . VALUES ( ?w ) { ( resource:Q18252195 ) ( resource:Q22289533 ) } } }
batA protein    TDE1250 Man1a2
action filter_type
action union
action find
entity Man1a2
relation encodes
action find
entity batA protein    TDE1250
relation encodes
type nutrient
{'OR': [['Man1a2', 'encodes', {'concept': 'nutrient'}], ['batA protein    TDE1250', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?r WHERE { ?r rdf:type ontology:nutrient . { ?w property:encodes ?r . VALUES ( ?w ) { ( resource:Man1a2 ) ( resource:batA_protein____TDE1250 ) } } }
[]
nutrient
Q22293573 Q21988253
SYSTEM
batA protein    TDE1250, Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB
Q22293573 Q21988253
OR((Q18252195,P688,c(Q181394)), (Q22289533,P688,c(Q181394)))
action filter_type
action union
action find
entity Q18252195
relation P688
action find
entity Q22289533
relation P688
type Q181394
[ANSWERS]
{'OR': [['Q18252195', 'P688', {'concept': 'Q181394'}], ['Q22289533', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?r WHERE { ?r rdf:type ontology:Q181394 . { ?w property:P688 ?r . VALUES ( ?w ) { ( resource:Q18252195 ) ( resource:Q22289533 ) } } }
batA protein    TDE1250 Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB
BatA protein TDE1250 and Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB are Man1a2 or batA protein TDE1250 an encoding of
batA protein    TDE1250 Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB
action filter_type
action union
action find
entity Man1a2
relation encodes
action find
entity batA protein    TDE1250
relation encodes
type nutrient
{'OR': [['Man1a2', 'encodes', {'concept': 'nutrient'}], ['batA protein    TDE1250', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?r WHERE { ?r rdf:type ontology:nutrient . { ?w property:encodes ?r . VALUES ( ?w ) { ( resource:Man1a2 ) ( resource:batA_protein____TDE1250 ) } } }
[]
Simple Question (Direct)
Simple Question|Mult. Entity|Indirect
Q22293573 Q21988253
P702
Q863908
USER
What are the gene that encodes batA protein    TDE1250 and Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB ?
(Q22293573,P702,c(Q863908)) (Q21988253,P702,c(Q863908))
action union
action filter_type
action find
entity Q22293573
relation P702
type Q863908
action filter_type
action find
entity Q21988253
relation P702
type Q863908
['Q22293573', 'P702', {'concept': 'Q863908'}] ['Q21988253', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?p WHERE { VALUES ( ?d ) { ( resource:Q22293573 ) ( resource:Q21988253 ) } . ?d property:P702 ?p }
batA protein    TDE1250 Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB
action union
action filter_type
action find
entity batA protein    TDE1250
relation encoded by
type nucleic acid sequence
action filter_type
action find
entity Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB
relation encoded by
type nucleic acid sequence
['batA protein    TDE1250', 'encoded by', {'concept': 'nucleic acid sequence'}] ['Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?p WHERE { VALUES ( ?d ) { ( resource:batA_protein____TDE1250 ) ( resource:Mannosyl-oligosaccharide_1,2-alpha-mannosidase_IB ) } . ?d property:encoded_by ?p }
[]
nucleic acid sequence
Q22289533 Q18252195
SYSTEM
batA protein    TDE1250, Man1a2
Q22289533 Q18252195
(Q22293573,P702,c(Q863908)) (Q21988253,P702,c(Q863908))
action union
action filter_type
action find
entity Q22293573
relation P702
type Q863908
action filter_type
action find
entity Q21988253
relation P702
type Q863908
[ANSWERS]
['Q22293573', 'P702', {'concept': 'Q863908'}] ['Q21988253', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?p WHERE { VALUES ( ?d ) { ( resource:Q22293573 ) ( resource:Q21988253 ) } . ?d property:P702 ?p }
batA protein    TDE1250 Man1a2
The gene that encodes batA protein TDE1250 and Mannosyl-oligosaccharide 1,2-alpha -mannosidase are named batA protein TDE1250 and Man1a2
batA protein    TDE1250 Man1a2
action union
action filter_type
action find
entity batA protein    TDE1250
relation encoded by
type nucleic acid sequence
action filter_type
action find
entity Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB
relation encoded by
type nucleic acid sequence
['batA protein    TDE1250', 'encoded by', {'concept': 'nucleic acid sequence'}] ['Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?p WHERE { VALUES ( ?d ) { ( resource:batA_protein____TDE1250 ) ( resource:Mannosyl-oligosaccharide_1,2-alpha-mannosidase_IB ) } . ?d property:encoded_by ?p }
[]
Simple Question (Direct)
Simple Question|Mult. Entity|Indirect
Q22289533 Q18252195
P702
Q181394
USER
What are the gene that are encoded by batA protein    TDE1250 and Man1a2 ?
(c(Q181394),P702,Q22289533) (c(Q181394),P702,Q18252195)
action union
action filter_type
action find_reverse
entity Q22289533
relation P702
type Q181394
action filter_type
action find_reverse
entity Q18252195
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q22289533'] [{'concept': 'Q181394'}, 'P702', 'Q18252195']
SELECT DISTINCT ?n WHERE { VALUES ( ?q ) { ( resource:Q22289533 ) ( resource:Q18252195 ) } . ?n property:P702 ?q }
batA protein    TDE1250 Man1a2
action union
action filter_type
action find_reverse
entity batA protein    TDE1250
relation encoded by
type nutrient
action filter_type
action find_reverse
entity Man1a2
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'batA protein    TDE1250'] [{'concept': 'nutrient'}, 'encoded by', 'Man1a2']
SELECT DISTINCT ?n WHERE { VALUES ( ?q ) { ( resource:batA_protein____TDE1250 ) ( resource:Man1a2 ) } . ?n property:encoded_by ?q }
[]
nutrient
Q22293573 Q21988253
SYSTEM
batA protein    TDE1250, Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB
Q22293573 Q21988253
(c(Q181394),P702,Q22289533) (c(Q181394),P702,Q18252195)
action union
action filter_type
action find_reverse
entity Q22289533
relation P702
type Q181394
action filter_type
action find_reverse
entity Q18252195
relation P702
type Q181394
[ANSWERS]
[{'concept': 'Q181394'}, 'P702', 'Q22289533'] [{'concept': 'Q181394'}, 'P702', 'Q18252195']
SELECT DISTINCT ?n WHERE { VALUES ( ?q ) { ( resource:Q22289533 ) ( resource:Q18252195 ) } . ?n property:P702 ?q }
batA protein    TDE1250 Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB
The gene that are encoded by batA protein TDE1250 and Man1a2 are not batA protein TDE1250 and Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB
batA protein    TDE1250 Mannosyl-oligosaccharide 1,2-alpha-mannosidase IB
action union
action filter_type
action find_reverse
entity batA protein    TDE1250
relation encoded by
type nutrient
action filter_type
action find_reverse
entity Man1a2
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'batA protein    TDE1250'] [{'concept': 'nutrient'}, 'encoded by', 'Man1a2']
SELECT DISTINCT ?n WHERE { VALUES ( ?q ) { ( resource:batA_protein____TDE1250 ) ( resource:Man1a2 ) } . ?n property:encoded_by ?q }
[]