Simple Question (Direct)
Simple Question
Q23429292
P680
Q44424
USER
What represents the molecular function of biotin synthase    AHA_1489 ?
(Q23429292,P680,c(Q44424))
action filter_type
action find
entity Q23429292
relation P680
type Q44424
['Q23429292', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?u WHERE { resource:Q23429292 property:P680 ?u . ?u rdf:type ontology:Q44424 }
biotin synthase    AHA_1489
action filter_type
action find
entity biotin synthase    AHA_1489
relation molecular function
type chemical bond
['biotin synthase    AHA_1489', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?u WHERE { resource:biotin_synthase____AHA_1489 property:molecular_function ?u . ?u rdf:type ontology:chemical_bond }
[]
chemical bond
Q13667380 Q14358439
SYSTEM
metal ion binding, iron ion binding
Q13667380 Q14358439
(Q23429292,P680,c(Q44424))
action filter_type
action find
entity Q23429292
relation P680
type Q44424
[ANSWERS] represent the molecular function of biotin synthase AHA_1489
['Q23429292', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?u WHERE { resource:Q23429292 property:P680 ?u . ?u rdf:type ontology:Q44424 }
metal ion binding iron ion binding
Metal ion binding and iron ion binding represent the molecular function of biotin synthase AHA_1489
metal ion binding iron ion binding
action filter_type
action find
entity biotin synthase    AHA_1489
relation molecular function
type chemical bond
['biotin synthase    AHA_1489', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?u WHERE { resource:biotin_synthase____AHA_1489 property:molecular_function ?u . ?u rdf:type ontology:chemical_bond }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23429292
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(c(Q863908),P688,Q13667380) (c(Q863908),P688,Q14358439)
action filter_type
action find_reverse
entity Q23429292
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q13667380'] [{'concept': 'Q863908'}, 'P688', 'Q14358439']
SELECT DISTINCT ?h WHERE { ?h property:P688 resource:Q23429292 . ?h rdf:type ontology:Q863908 }
biotin synthase    AHA_1489
action filter_type
action find_reverse
entity biotin synthase    AHA_1489
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'metal ion binding'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'iron ion binding']
SELECT DISTINCT ?h WHERE { ?h property:encodes resource:biotin_synthase____AHA_1489 . ?h rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23116217
SYSTEM
biotin synthase    AHA_1489
Q23116217
(c(Q863908),P688,Q13667380) (c(Q863908),P688,Q14358439)
action filter_type
action find_reverse
entity Q23429292
relation P688
type Q863908
Biotin synthase AHA 1489 encodes that nutrient
[{'concept': 'Q863908'}, 'P688', 'Q13667380'] [{'concept': 'Q863908'}, 'P688', 'Q14358439']
SELECT DISTINCT ?h WHERE { ?h property:P688 resource:Q23429292 . ?h rdf:type ontology:Q863908 }
biotin synthase    AHA_1489
Biotin synthase AHA 1489 encodes that nutrient
biotin synthase    AHA_1489
action filter_type
action find_reverse
entity biotin synthase    AHA_1489
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'metal ion binding'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'iron ion binding']
SELECT DISTINCT ?h WHERE { ?h property:encodes resource:biotin_synthase____AHA_1489 . ?h rdf:type ontology:nucleic_acid_sequence }
[]
Logical Reasoning (All)
Logical|Intersection|Multiple_Relation
Q21102944 Q23429292
P703 P688
Q863908
USER
Which nucleic acid sequences encodes biotin synthase    AHA_1489 and species belongs to the taxon Aeromonas hydrophila subsp. hydrophila ATCC 7966 ?
AND((c(Q863908),P688,Q23429292), (c(Q863908),P703,Q21102944))
action filter_type
action intersection
action find_reverse
entity Q23429292
relation P688
action find_reverse
entity Q21102944
relation P703
type Q863908
{'AND': [[{'concept': 'Q863908'}, 'P688', 'Q23429292'], [{'concept': 'Q863908'}, 'P703', 'Q21102944']]}
SELECT DISTINCT ?l WHERE { ?l property:P688 resource:Q23429292 . ?l property:P703 resource:Q21102944 . ?l rdf:type ontology:Q863908 }
Aeromonas hydrophila subsp. hydrophila ATCC 7966 biotin synthase    AHA_1489
action filter_type
action intersection
action find_reverse
entity biotin synthase    AHA_1489
relation encodes
action find_reverse
entity Aeromonas hydrophila subsp. hydrophila ATCC 7966
relation found in taxon
type nucleic acid sequence
{'AND': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'biotin synthase    AHA_1489'], [{'concept': 'nucleic acid sequence'}, 'found in taxon', 'Aeromonas hydrophila subsp. hydrophila ATCC 7966']]}
SELECT DISTINCT ?l WHERE { ?l property:encodes resource:biotin_synthase____AHA_1489 . ?l property:found_in_taxon resource:Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 . ?l rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23116217
SYSTEM
biotin synthase    AHA_1489
Q23116217
AND((c(Q863908),P688,Q23429292), (c(Q863908),P703,Q21102944))
action filter_type
action intersection
action find_reverse
entity Q23429292
relation P688
action find_reverse
entity Q21102944
relation P703
type Q863908
Biotin synthase AHA 1489 encodes biotin synthase AHA_1489 and species belongs to the taxon Aeromonas hydrophila subsp. hydrophila ATCC 7966
{'AND': [[{'concept': 'Q863908'}, 'P688', 'Q23429292'], [{'concept': 'Q863908'}, 'P703', 'Q21102944']]}
SELECT DISTINCT ?l WHERE { ?l property:P688 resource:Q23429292 . ?l property:P703 resource:Q21102944 . ?l rdf:type ontology:Q863908 }
biotin synthase    AHA_1489
Biotin synthase AHA 1489 encodes biotin synthase AHA_1489 and species belongs to the taxon Aeromonas hydrophila subsp. hydrophila ATCC 7966
biotin synthase    AHA_1489
action filter_type
action intersection
action find_reverse
entity biotin synthase    AHA_1489
relation encodes
action find_reverse
entity Aeromonas hydrophila subsp. hydrophila ATCC 7966
relation found in taxon
type nucleic acid sequence
{'AND': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'biotin synthase    AHA_1489'], [{'concept': 'nucleic acid sequence'}, 'found in taxon', 'Aeromonas hydrophila subsp. hydrophila ATCC 7966']]}
SELECT DISTINCT ?l WHERE { ?l property:encodes resource:biotin_synthase____AHA_1489 . ?l property:found_in_taxon resource:Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 . ?l rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q23116217 Q23589883
P702
Q181394
USER
Is Putative glycosyl hydrolase (beta-glucosidase)    MAB_3192c encoded by that nucleic acid sequence ?
(Q23589883,P702,Q23116217)
action is_in
entity Q23589883
action find
entity Q23116217
relation P702
['Q23589883', 'P702', 'Q23116217']
ASK WHERE { resource:Q23116217 property:P702 resource:Q23589883 }
biotin synthase    AHA_1489 Putative glycosyl hydrolase (beta-glucosidase)    MAB_3192c
action is_in
entity Putative glycosyl hydrolase (beta-glucosidase)    MAB_3192c
action find
entity biotin synthase    AHA_1489
relation encoded by
['Putative glycosyl hydrolase (beta-glucosidase)    MAB_3192c', 'encoded by', 'biotin synthase    AHA_1489']
ASK WHERE { resource:biotin_synthase____AHA_1489 property:encoded_by resource:Putative_glycosyl_hydrolase_(beta-glucosidase)____MAB_3192c }
[]
nutrient
SYSTEM
NO
(Q23589883,P702,Q23116217)
action is_in
entity Q23589883
action find
entity Q23116217
relation P702
[ANSWER]
['Q23589883', 'P702', 'Q23116217']
ASK WHERE { resource:Q23116217 property:P702 resource:Q23589883 }
No
action is_in
entity Putative glycosyl hydrolase (beta-glucosidase)    MAB_3192c
action find
entity biotin synthase    AHA_1489
relation encoded by
['Putative glycosyl hydrolase (beta-glucosidase)    MAB_3192c', 'encoded by', 'biotin synthase    AHA_1489']
ASK WHERE { resource:biotin_synthase____AHA_1489 property:encoded_by resource:Putative_glycosyl_hydrolase_(beta-glucosidase)____MAB_3192c }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Mult. entity type
Q23116217 Q24254638
P703
Q631147
USER
How many infraspecific names are biotin synthase    AHA_1489 or operon 009 found in ?
(Q23116217,P703,c(Q631147)) (Q24254638,P703,c(Q631147))
action count
action union
action filter_type
action find
entity Q23116217
relation P703
type Q631147
action filter_type
action find
entity Q24254638
relation P703
type Q631147
['Q23116217', 'P703', {'concept': 'Q631147'}] ['Q24254638', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ( COUNT ( ?l ) AS ?p ) WHERE { { resource:Q24254638 property:P703 ?l . ?l rdf:type ontology:Q631147 } UNION { resource:Q23116217 property:P703 ?l . ?l rdf:type ontology:Q631147 } }
biotin synthase    AHA_1489 operon 009
action count
action union
action filter_type
action find
entity biotin synthase    AHA_1489
relation found in taxon
type infraspecific name
action filter_type
action find
entity operon 009
relation found in taxon
type infraspecific name
['biotin synthase    AHA_1489', 'found in taxon', {'concept': 'infraspecific name'}] ['operon 009', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ( COUNT ( ?l ) AS ?p ) WHERE { { resource:operon_009 property:found_in_taxon ?l . ?l rdf:type ontology:infraspecific_name } UNION { resource:biotin_synthase____AHA_1489 property:found_in_taxon ?l . ?l rdf:type ontology:infraspecific_name } }
[]
infraspecific name
SYSTEM
2
Q21102981 Q21102944
(Q23116217,P703,c(Q631147)) (Q24254638,P703,c(Q631147))
action count
action union
action filter_type
action find
entity Q23116217
relation P703
type Q631147
action filter_type
action find
entity Q24254638
relation P703
type Q631147
[ANSWER]
['Q23116217', 'P703', {'concept': 'Q631147'}] ['Q24254638', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ( COUNT ( ?l ) AS ?p ) WHERE { { resource:Q24254638 property:P703 ?l . ?l rdf:type ontology:Q631147 } UNION { resource:Q23116217 property:P703 ?l . ?l rdf:type ontology:Q631147 } }
Listeria monocytogenes EGD-e Aeromonas hydrophila subsp. hydrophila ATCC 7966
2
action count
action union
action filter_type
action find
entity biotin synthase    AHA_1489
relation found in taxon
type infraspecific name
action filter_type
action find
entity operon 009
relation found in taxon
type infraspecific name
['biotin synthase    AHA_1489', 'found in taxon', {'concept': 'infraspecific name'}] ['operon 009', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ( COUNT ( ?l ) AS ?p ) WHERE { { resource:operon_009 property:found_in_taxon ?l . ?l rdf:type ontology:infraspecific_name } UNION { resource:biotin_synthase____AHA_1489 property:found_in_taxon ?l . ?l rdf:type ontology:infraspecific_name } }
[]
Quantitative Reasoning (All)
Quantitative|Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q79529 Q8386 Q181394
USER
Which nutrients communicates with around 30 chemical substances or drugs ?
(c(Q181394),P129,c(Q79529)|c(Q8386))
action approx
action union
action find_tuple_counts
relation P129
type Q181394
type Q79529
action find_tuple_counts
relation P129
type Q181394
type Q8386
value 30
[{'concept': 'Q181394'}, 'P129', [{'concept': 'Q79529'}, {'concept': 'Q8386'}]]
SELECT DISTINCT ?j WHERE { { SELECT DISTINCT ?j ( COUNT ( ?y ) AS ?r ) WHERE { { ?j property:P129 ?y . ?j rdf:type ontology:Q181394 . ?y rdf:type ontology:Q79529 } UNION { ?j property:P129 ?y . ?j rdf:type ontology:Q181394 . ?y rdf:type ontology:Q8386 } } GROUP BY ?j } . FILTER ( ?r = 30 ) }
action approx
action union
action find_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
action find_tuple_counts
relation physically interacts with
type nutrient
type drug
value 30
[{'concept': 'nutrient'}, 'physically interacts with', [{'concept': 'chemical substance'}, {'concept': 'drug'}]]
SELECT DISTINCT ?j WHERE { { SELECT DISTINCT ?j ( COUNT ( ?y ) AS ?r ) WHERE { { ?j property:physically_interacts_with ?y . ?j rdf:type ontology:nutrient . ?y rdf:type ontology:chemical_substance } UNION { ?j property:physically_interacts_with ?y . ?j rdf:type ontology:nutrient . ?y rdf:type ontology:drug } } GROUP BY ?j } . FILTER ( ?r = 30 ) }
[]
chemical substance drug nutrient
Q415364 Q5123372 Q21110867
SYSTEM
Prostaglandin G/H synthase 2, Mu-type opioid receptor, D(1A) dopamine receptor
Q7050954 Q308856 Q4847910 Q287961 Q5123372 Q410142 Q287958 Q21110867 Q4847900 Q4847907 Q4734884 Q4734887 Q4734886 Q2844056 Q21115334 Q21115052 Q415364 Q4734894 Q4734892 Q21114578 Q4734891 Q8083989 Q21114582 Q5520260
(c(Q181394),P129,c(Q79529)|c(Q8386))
action approx
action union
action find_tuple_counts
relation P129
type Q181394
type Q79529
action find_tuple_counts
relation P129
type Q181394
type Q8386
value 30
[ANSWERS] communicate with around 30 chemical substances or drugs
[{'concept': 'Q181394'}, 'P129', [{'concept': 'Q79529'}, {'concept': 'Q8386'}]]
SELECT DISTINCT ?j WHERE { { SELECT DISTINCT ?j ( COUNT ( ?y ) AS ?r ) WHERE { { ?j property:P129 ?y . ?j rdf:type ontology:Q181394 . ?y rdf:type ontology:Q79529 } UNION { ?j property:P129 ?y . ?j rdf:type ontology:Q181394 . ?y rdf:type ontology:Q8386 } } GROUP BY ?j } . FILTER ( ?r = 30 ) }
Sodium-dependent noradrenaline transporter D(4) dopamine receptor Muscarinic acetylcholine receptor M2 Beta-2 adrenergic receptor Mu-type opioid receptor Sodium-dependent serotonin transporter Beta-1 adrenergic receptor D(1A) dopamine receptor Muscarinic acetylcholine receptor M1 Muscarinic acetylcholine receptor M4 Alpha-1A adrenergic receptor Alpha-1D adrenergic receptor Alpha-1B adrenergic receptor Muscarinic acetylcholine receptor M3 Delta-type opioid receptor 5-hydroxytryptamine receptor 1F Prostaglandin G/H synthase 2 Alpha-2B adrenergic receptor Alpha-2A adrenergic receptor Gamma-aminobutyric acid receptor subunit alpha-3 Alpha-2C adrenergic receptor Kappa-type opioid receptor Gamma-aminobutyric acid receptor subunit alpha-2 Gamma-aminobutyric acid receptor subunit alpha-1
Prostaglandin G/H synthase 2, Mu-type opioid receptor and D(1A) dopamine receptor communicate with around 30 chemical substances or drugs
Prostaglandin G/H synthase 2 Mu-type opioid receptor D(1A) dopamine receptor
action approx
action union
action find_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
action find_tuple_counts
relation physically interacts with
type nutrient
type drug
value 30
[{'concept': 'nutrient'}, 'physically interacts with', [{'concept': 'chemical substance'}, {'concept': 'drug'}]]
SELECT DISTINCT ?j WHERE { { SELECT DISTINCT ?j ( COUNT ( ?y ) AS ?r ) WHERE { { ?j property:physically_interacts_with ?y . ?j rdf:type ontology:nutrient . ?y rdf:type ontology:chemical_substance } UNION { ?j property:physically_interacts_with ?y . ?j rdf:type ontology:nutrient . ?y rdf:type ontology:drug } } GROUP BY ?j } . FILTER ( ?r = 30 ) }
[]