Simple Question (Direct)
Simple Question
Q27549834
P703
Q631147
USER
What is the taxon to which peroxiredoxin HYR1 YIR037W belongs to ?
(Q27549834,P703,c(Q631147))
action filter_type
action find
entity Q27549834
relation P703
type Q631147
['Q27549834', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?b WHERE { resource:Q27549834 property:P703 ?b . ?b rdf:type ontology:Q631147 }
peroxiredoxin HYR1 YIR037W
action filter_type
action find
entity peroxiredoxin HYR1 YIR037W
relation found in taxon
type infraspecific name
['peroxiredoxin HYR1 YIR037W', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?b WHERE { resource:peroxiredoxin_HYR1_YIR037W property:found_in_taxon ?b . ?b rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q27510868
SYSTEM
Saccharomyces cerevisiae S288c
Q27510868
(Q27549834,P703,c(Q631147))
action filter_type
action find
entity Q27549834
relation P703
type Q631147
[ANSWER]
['Q27549834', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?b WHERE { resource:Q27549834 property:P703 ?b . ?b rdf:type ontology:Q631147 }
Saccharomyces cerevisiae S288c
Saccharomyces cerevisiae S288c
Saccharomyces cerevisiae S288c
action filter_type
action find
entity peroxiredoxin HYR1 YIR037W
relation found in taxon
type infraspecific name
['peroxiredoxin HYR1 YIR037W', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?b WHERE { resource:peroxiredoxin_HYR1_YIR037W property:found_in_taxon ?b . ?b rdf:type ontology:infraspecific_name }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q27549834
P688
Q863908
USER
What is the nucleic acid sequence that is encoded by peroxiredoxin HYR1 YIR037W ?
(c(Q863908),P688,Q27549834)
action filter_type
action find_reverse
entity Q27549834
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q27549834']
SELECT DISTINCT ?a WHERE { ?a property:P688 resource:Q27549834 . ?a rdf:type ontology:Q863908 }
peroxiredoxin HYR1 YIR037W
action filter_type
action find_reverse
entity peroxiredoxin HYR1 YIR037W
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'peroxiredoxin HYR1 YIR037W']
SELECT DISTINCT ?a WHERE { ?a property:encodes resource:peroxiredoxin_HYR1_YIR037W . ?a rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q27542741
SYSTEM
peroxiredoxin HYR1 YIR037W
Q27542741
(c(Q863908),P688,Q27549834)
action filter_type
action find_reverse
entity Q27549834
relation P688
type Q863908
The nucleic acid sequence that is encoded by peroxiredoxin HYR1 YIR037 W is in [ANSWER]
[{'concept': 'Q863908'}, 'P688', 'Q27549834']
SELECT DISTINCT ?a WHERE { ?a property:P688 resource:Q27549834 . ?a rdf:type ontology:Q863908 }
peroxiredoxin HYR1 YIR037W
The nucleic acid sequence that is encoded by peroxiredoxin HYR1 YIR037 W is in peroxiredoxin HYR1 YIR037W
peroxiredoxin HYR1 YIR037W
action filter_type
action find_reverse
entity peroxiredoxin HYR1 YIR037W
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'peroxiredoxin HYR1 YIR037W']
SELECT DISTINCT ?a WHERE { ?a property:encodes resource:peroxiredoxin_HYR1_YIR037W . ?a rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q27549834
P682
Q1057
USER
Which metabolic process is that nutrient involved in ?
(Q27542741,P682,c(Q1057))
action filter_type
action find
entity Q27549834
relation P682
type Q1057
['Q27542741', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?k WHERE { resource:Q27549834 property:P682 ?k . ?k rdf:type ontology:Q1057 }
peroxiredoxin HYR1 YIR037W
action filter_type
action find
entity peroxiredoxin HYR1 YIR037W
relation biological process
type metabolic process
['peroxiredoxin HYR1 YIR037W', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?k WHERE { resource:peroxiredoxin_HYR1_YIR037W property:biological_process ?k . ?k rdf:type ontology:metabolic_process }
[]
metabolic process
Q14349764
SYSTEM
oxidation-reduction process
Q14349764
(Q27542741,P682,c(Q1057))
action filter_type
action find
entity Q27549834
relation P682
type Q1057
That nutrient is an [ANSWER]
['Q27542741', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?k WHERE { resource:Q27549834 property:P682 ?k . ?k rdf:type ontology:Q1057 }
oxidation-reduction process
That nutrient is an oxidation-reduction process
oxidation-reduction process
action filter_type
action find
entity peroxiredoxin HYR1 YIR037W
relation biological process
type metabolic process
['peroxiredoxin HYR1 YIR037W', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?k WHERE { resource:peroxiredoxin_HYR1_YIR037W property:biological_process ?k . ?k rdf:type ontology:metabolic_process }
[]
Simple Question (Ellipsis)
Incomplete|object parent is changed, subject and predicate remain same
Q27549834
Q631147
USER
And which infraspecific name?
(Q27549834,P703,c(Q631147))
action filter_type
action find
entity Q27549834
relation P703
type Q631147
['Q27549834', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:Q631147 . resource:Q27549834 property:P703 ?x }
peroxiredoxin HYR1 YIR037W
action filter_type
action find
entity peroxiredoxin HYR1 YIR037W
relation found in taxon
type infraspecific name
['peroxiredoxin HYR1 YIR037W', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:infraspecific_name . resource:peroxiredoxin_HYR1_YIR037W property:found_in_taxon ?x }
[]
infraspecific name
Q27510868
SYSTEM
Saccharomyces cerevisiae S288c
Q27510868
(Q27549834,P703,c(Q631147))
action filter_type
action find
entity Q27549834
relation P703
type Q631147
[ANSWER]
['Q27549834', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:Q631147 . resource:Q27549834 property:P703 ?x }
Saccharomyces cerevisiae S288c
Saccharomyces cerevisiae S288c
action filter_type
action find
entity peroxiredoxin HYR1 YIR037W
relation found in taxon
type infraspecific name
['peroxiredoxin HYR1 YIR037W', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:infraspecific_name . resource:peroxiredoxin_HYR1_YIR037W property:found_in_taxon ?x }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q27510868 Q23632151
P703
Q181394
USER
Is phytoene dehydrogenase    RB11943 found in the taxon that infraspecific name ?
(Q23632151,P703,Q27510868)
action is_in
entity Q23632151
action find
entity Q27510868
relation P703
['Q23632151', 'P703', 'Q27510868']
ASK WHERE { resource:Q27510868 property:P703 resource:Q23632151 }
Saccharomyces cerevisiae S288c phytoene dehydrogenase    RB11943
action is_in
entity phytoene dehydrogenase    RB11943
action find
entity Saccharomyces cerevisiae S288c
relation found in taxon
['phytoene dehydrogenase    RB11943', 'found in taxon', 'Saccharomyces cerevisiae S288c']
ASK WHERE { resource:Saccharomyces_cerevisiae_S288c property:found_in_taxon resource:phytoene_dehydrogenase____RB11943 }
[]
nutrient
SYSTEM
NO
(Q23632151,P703,Q27510868)
action is_in
entity Q23632151
action find
entity Q27510868
relation P703
[ANSWER]
['Q23632151', 'P703', 'Q27510868']
ASK WHERE { resource:Q27510868 property:P703 resource:Q23632151 }
No
action is_in
entity phytoene dehydrogenase    RB11943
action find
entity Saccharomyces cerevisiae S288c
relation found in taxon
['phytoene dehydrogenase    RB11943', 'found in taxon', 'Saccharomyces cerevisiae S288c']
ASK WHERE { resource:Saccharomyces_cerevisiae_S288c property:found_in_taxon resource:phytoene_dehydrogenase____RB11943 }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Logical operators
Q27549834
P681
Q15989253 Q5058355
USER
How many parts or cellular components are the cell components of peroxiredoxin HYR1 YIR037W ?
(Q27549834,P681,c(Q15989253)) (Q27549834,P681,c(Q5058355))
action count
action union
action filter_type
action find
entity Q27549834
relation P681
type Q15989253
action filter_type
action find
entity Q27549834
relation P681
type Q5058355
['Q27549834', 'P681', {'concept': 'Q15989253'}] ['Q27549834', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ( COUNT ( ?p ) AS ?f ) WHERE { { ?p rdf:type ontology:Q5058355 . resource:Q27549834 property:P681 ?p } UNION { ?p rdf:type ontology:Q15989253 . resource:Q27549834 property:P681 ?p } }
peroxiredoxin HYR1 YIR037W
action count
action union
action filter_type
action find
entity peroxiredoxin HYR1 YIR037W
relation cell component
type part
action filter_type
action find
entity peroxiredoxin HYR1 YIR037W
relation cell component
type cellular component
['peroxiredoxin HYR1 YIR037W', 'cell component', {'concept': 'part'}] ['peroxiredoxin HYR1 YIR037W', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ( COUNT ( ?p ) AS ?f ) WHERE { { ?p rdf:type ontology:cellular_component . resource:peroxiredoxin_HYR1_YIR037W property:cell_component ?p } UNION { ?p rdf:type ontology:part . resource:peroxiredoxin_HYR1_YIR037W property:cell_component ?p } }
[]
part cellular component
SYSTEM
4
Q138639 Q79899 Q39572 Q3824358
(Q27549834,P681,c(Q15989253)) (Q27549834,P681,c(Q5058355))
action count
action union
action filter_type
action find
entity Q27549834
relation P681
type Q15989253
action filter_type
action find
entity Q27549834
relation P681
type Q5058355
[ANSWER]
['Q27549834', 'P681', {'concept': 'Q15989253'}] ['Q27549834', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ( COUNT ( ?p ) AS ?f ) WHERE { { ?p rdf:type ontology:Q5058355 . resource:Q27549834 property:P681 ?p } UNION { ?p rdf:type ontology:Q15989253 . resource:Q27549834 property:P681 ?p } }
peroxisome cytoplasm mitochondrion intracellular
4
action count
action union
action filter_type
action find
entity peroxiredoxin HYR1 YIR037W
relation cell component
type part
action filter_type
action find
entity peroxiredoxin HYR1 YIR037W
relation cell component
type cellular component
['peroxiredoxin HYR1 YIR037W', 'cell component', {'concept': 'part'}] ['peroxiredoxin HYR1 YIR037W', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ( COUNT ( ?p ) AS ?f ) WHERE { { ?p rdf:type ontology:cellular_component . resource:peroxiredoxin_HYR1_YIR037W property:cell_component ?p } UNION { ?p rdf:type ontology:part . resource:peroxiredoxin_HYR1_YIR037W property:cell_component ?p } }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q27542741 Q23581847
P688
Q181394
USER
Is hypothetical protein    AMED_2329 encoded by peroxiredoxin HYR1 YIR037W ?
(Q27542741,P688,Q23581847)
action is_in
entity Q23581847
action find
entity Q27542741
relation P688
['Q27542741', 'P688', 'Q23581847']
ASK WHERE { resource:Q27542741 property:P688 resource:Q23581847 }
peroxiredoxin HYR1 YIR037W hypothetical protein    AMED_2329
action is_in
entity hypothetical protein    AMED_2329
action find
entity peroxiredoxin HYR1 YIR037W
relation encodes
['peroxiredoxin HYR1 YIR037W', 'encodes', 'hypothetical protein    AMED_2329']
ASK WHERE { resource:peroxiredoxin_HYR1_YIR037W property:encodes resource:hypothetical_protein____AMED_2329 }
[]
nutrient
SYSTEM
NO
(Q27542741,P688,Q23581847)
action is_in
entity Q23581847
action find
entity Q27542741
relation P688
[ANSWER]
['Q27542741', 'P688', 'Q23581847']
ASK WHERE { resource:Q27542741 property:P688 resource:Q23581847 }
No
action is_in
entity hypothetical protein    AMED_2329
action find
entity peroxiredoxin HYR1 YIR037W
relation encodes
['peroxiredoxin HYR1 YIR037W', 'encodes', 'hypothetical protein    AMED_2329']
ASK WHERE { resource:peroxiredoxin_HYR1_YIR037W property:encodes resource:hypothetical_protein____AMED_2329 }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type
Q27542741
P688
Q181394
USER
How many nutrients are encoded by peroxiredoxin HYR1 YIR037W ?
(Q27542741,P688,c(Q181394))
action count
action filter_type
action find
entity Q27542741
relation P688
type Q181394
['Q27542741', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?d ) AS ?p ) WHERE { resource:Q27542741 property:P688 ?d . ?d rdf:type ontology:Q181394 }
peroxiredoxin HYR1 YIR037W
action count
action filter_type
action find
entity peroxiredoxin HYR1 YIR037W
relation encodes
type nutrient
['peroxiredoxin HYR1 YIR037W', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?d ) AS ?p ) WHERE { resource:peroxiredoxin_HYR1_YIR037W property:encodes ?d . ?d rdf:type ontology:nutrient }
[]
nutrient
SYSTEM
1
Q27549834
(Q27542741,P688,c(Q181394))
action count
action filter_type
action find
entity Q27542741
relation P688
type Q181394
[ANSWER]
['Q27542741', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?d ) AS ?p ) WHERE { resource:Q27542741 property:P688 ?d . ?d rdf:type ontology:Q181394 }
peroxiredoxin HYR1 YIR037W
1
action count
action filter_type
action find
entity peroxiredoxin HYR1 YIR037W
relation encodes
type nutrient
['peroxiredoxin HYR1 YIR037W', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?d ) AS ?p ) WHERE { resource:peroxiredoxin_HYR1_YIR037W property:encodes ?d . ?d rdf:type ontology:nutrient }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q27542741
P702
Q181394
USER
Which nutrient does that nucleic acid sequence encode ?
action filter_type
action find_reverse
entity Q27542741
relation P702
type Q181394
SELECT DISTINCT ?k WHERE { ?k property:P702 resource:Q27542741 . ?k rdf:type ontology:Q181394 }
peroxiredoxin HYR1 YIR037W
action filter_type
action find_reverse
entity peroxiredoxin HYR1 YIR037W
relation encoded by
type nutrient
SELECT DISTINCT ?k WHERE { ?k property:encoded_by resource:peroxiredoxin_HYR1_YIR037W . ?k rdf:type ontology:nutrient }
[]
nutrient
Q27549834
SYSTEM
peroxiredoxin HYR1 YIR037W
Q27549834
action filter_type
action find_reverse
entity Q27542741
relation P702
type Q181394
That nucleic acid sequence encodes the [ANSWER]
SELECT DISTINCT ?k WHERE { ?k property:P702 resource:Q27542741 . ?k rdf:type ontology:Q181394 }
peroxiredoxin HYR1 YIR037W
That nucleic acid sequence encodes the peroxiredoxin HYR1 YIR037W
peroxiredoxin HYR1 YIR037W
action filter_type
action find_reverse
entity peroxiredoxin HYR1 YIR037W
relation encoded by
type nutrient
SELECT DISTINCT ?k WHERE { ?k property:encoded_by resource:peroxiredoxin_HYR1_YIR037W . ?k rdf:type ontology:nutrient }
[]