Simple Question (Direct)
Simple Question
Q27551238
P681
Q15989253
USER
Which is the cell component of inositol polyphosphate multikinase YDR173C ?
(Q27551238,P681,c(Q15989253))
action filter_type
action find
entity Q27551238
relation P681
type Q15989253
['Q27551238', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?f WHERE { resource:Q27551238 property:P681 ?f . ?f rdf:type ontology:Q15989253 }
inositol polyphosphate multikinase YDR173C
action filter_type
action find
entity inositol polyphosphate multikinase YDR173C
relation cell component
type part
['inositol polyphosphate multikinase YDR173C', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?f WHERE { resource:inositol_polyphosphate_multikinase_YDR173C property:cell_component ?f . ?f rdf:type ontology:part }
[]
part
Q40260
SYSTEM
nucleus
Q40260
(Q27551238,P681,c(Q15989253))
action filter_type
action find
entity Q27551238
relation P681
type Q15989253
The [ANSWER] is the cell component of inositol polyphosphate multikinase YDR173C
['Q27551238', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?f WHERE { resource:Q27551238 property:P681 ?f . ?f rdf:type ontology:Q15989253 }
nucleus
The nucleus is the cell component of inositol polyphosphate multikinase YDR173C
nucleus
action filter_type
action find
entity inositol polyphosphate multikinase YDR173C
relation cell component
type part
['inositol polyphosphate multikinase YDR173C', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?f WHERE { resource:inositol_polyphosphate_multikinase_YDR173C property:cell_component ?f . ?f rdf:type ontology:part }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q27551238
P703
Q631147
USER
Which taxon is inositol polyphosphate multikinase YDR173C a part of ?
(Q27551238,P703,c(Q631147))
action filter_type
action find
entity Q27551238
relation P703
type Q631147
['Q27551238', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:Q631147 . resource:Q27551238 property:P703 ?u }
inositol polyphosphate multikinase YDR173C
action filter_type
action find
entity inositol polyphosphate multikinase YDR173C
relation found in taxon
type infraspecific name
['inositol polyphosphate multikinase YDR173C', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:infraspecific_name . resource:inositol_polyphosphate_multikinase_YDR173C property:found_in_taxon ?u }
[]
infraspecific name
Q27510868
SYSTEM
Saccharomyces cerevisiae S288c
Q27510868
(Q27551238,P703,c(Q631147))
action filter_type
action find
entity Q27551238
relation P703
type Q631147
E [ANSWER] is inositol polyphosphate multikinase YDR173C a part of
['Q27551238', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:Q631147 . resource:Q27551238 property:P703 ?u }
Saccharomyces cerevisiae S288c
E Saccharomyces cerevisiae S288c is inositol polyphosphate multikinase YDR173C a part of
Saccharomyces cerevisiae S288c
action filter_type
action find
entity inositol polyphosphate multikinase YDR173C
relation found in taxon
type infraspecific name
['inositol polyphosphate multikinase YDR173C', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:infraspecific_name . resource:inositol_polyphosphate_multikinase_YDR173C property:found_in_taxon ?u }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q27551238
P680
Q44424
USER
Which chemical bond represents molecular function of inositol polyphosphate multikinase YDR173C ?
(Q27551238,P680,c(Q44424))
action filter_type
action find
entity Q27551238
relation P680
type Q44424
['Q27551238', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?j WHERE { resource:Q27551238 property:P680 ?j . ?j rdf:type ontology:Q44424 }
inositol polyphosphate multikinase YDR173C
action filter_type
action find
entity inositol polyphosphate multikinase YDR173C
relation molecular function
type chemical bond
['inositol polyphosphate multikinase YDR173C', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?j WHERE { resource:inositol_polyphosphate_multikinase_YDR173C property:molecular_function ?j . ?j rdf:type ontology:chemical_bond }
[]
chemical bond
Q13667380
SYSTEM
metal ion binding
Q13667380
(Q27551238,P680,c(Q44424))
action filter_type
action find
entity Q27551238
relation P680
type Q44424
The [ANSWER] represents molecular function of inositol polyphosphate multikinase YDR173C
['Q27551238', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?j WHERE { resource:Q27551238 property:P680 ?j . ?j rdf:type ontology:Q44424 }
metal ion binding
The metal ion binding represents molecular function of inositol polyphosphate multikinase YDR173C
metal ion binding
action filter_type
action find
entity inositol polyphosphate multikinase YDR173C
relation molecular function
type chemical bond
['inositol polyphosphate multikinase YDR173C', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?j WHERE { resource:inositol_polyphosphate_multikinase_YDR173C property:molecular_function ?j . ?j rdf:type ontology:chemical_bond }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q27551238
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(c(Q863908),P688,Q13667380)
action filter_type
action find_reverse
entity Q27551238
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q13667380']
SELECT DISTINCT ?p WHERE { ?p property:P688 resource:Q27551238 . ?p rdf:type ontology:Q863908 }
inositol polyphosphate multikinase YDR173C
action filter_type
action find_reverse
entity inositol polyphosphate multikinase YDR173C
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'metal ion binding']
SELECT DISTINCT ?p WHERE { ?p property:encodes resource:inositol_polyphosphate_multikinase_YDR173C . ?p rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q27544174
SYSTEM
inositol polyphosphate multikinase YDR173C
Q27544174
(c(Q863908),P688,Q13667380)
action filter_type
action find_reverse
entity Q27551238
relation P688
type Q863908
[ANSWER] encodes that nutrient
[{'concept': 'Q863908'}, 'P688', 'Q13667380']
SELECT DISTINCT ?p WHERE { ?p property:P688 resource:Q27551238 . ?p rdf:type ontology:Q863908 }
inositol polyphosphate multikinase YDR173C
Inositol polyphosphate multikinase YDR173C encodes that nutrient
inositol polyphosphate multikinase YDR173C
action filter_type
action find_reverse
entity inositol polyphosphate multikinase YDR173C
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'metal ion binding']
SELECT DISTINCT ?p WHERE { ?p property:encodes resource:inositol_polyphosphate_multikinase_YDR173C . ?p rdf:type ontology:nucleic_acid_sequence }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Mult. entity type
Q27551238 Q39798
P688
Q863908
USER
How many nucleic acid sequences encodes inositol polyphosphate multikinase YDR173C or Insulin ?
(c(Q863908),P688,Q27551238) (c(Q863908),P688,Q39798)
action count
action union
action filter_type
action find_reverse
entity Q27551238
relation P688
type Q863908
action filter_type
action find_reverse
entity Q39798
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q27551238'] [{'concept': 'Q863908'}, 'P688', 'Q39798']
SELECT DISTINCT ( COUNT ( ?w ) AS ?m ) WHERE { ?w property:P688 ?q . VALUES ( ?q ) { ( resource:Q39798 ) ( resource:Q27551238 ) } }
inositol polyphosphate multikinase YDR173C Insulin
action count
action union
action filter_type
action find_reverse
entity inositol polyphosphate multikinase YDR173C
relation encodes
type nucleic acid sequence
action filter_type
action find_reverse
entity Insulin
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'inositol polyphosphate multikinase YDR173C'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'Insulin']
SELECT DISTINCT ( COUNT ( ?w ) AS ?m ) WHERE { ?w property:encodes ?q . VALUES ( ?q ) { ( resource:Insulin ) ( resource:inositol_polyphosphate_multikinase_YDR173C ) } }
[]
nucleic acid sequence
SYSTEM
2
Q21163221 Q27544174
(c(Q863908),P688,Q27551238) (c(Q863908),P688,Q39798)
action count
action union
action filter_type
action find_reverse
entity Q27551238
relation P688
type Q863908
action filter_type
action find_reverse
entity Q39798
relation P688
type Q863908
[ANSWER]
[{'concept': 'Q863908'}, 'P688', 'Q27551238'] [{'concept': 'Q863908'}, 'P688', 'Q39798']
SELECT DISTINCT ( COUNT ( ?w ) AS ?m ) WHERE { ?w property:P688 ?q . VALUES ( ?q ) { ( resource:Q39798 ) ( resource:Q27551238 ) } }
INS inositol polyphosphate multikinase YDR173C
2
action count
action union
action filter_type
action find_reverse
entity inositol polyphosphate multikinase YDR173C
relation encodes
type nucleic acid sequence
action filter_type
action find_reverse
entity Insulin
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'inositol polyphosphate multikinase YDR173C'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'Insulin']
SELECT DISTINCT ( COUNT ( ?w ) AS ?m ) WHERE { ?w property:encodes ?q . VALUES ( ?q ) { ( resource:Insulin ) ( resource:inositol_polyphosphate_multikinase_YDR173C ) } }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type
Q27544174
P702
Q181394
USER
How many nutrients are the gene that are encoded by inositol polyphosphate multikinase YDR173C ?
(c(Q181394),P702,Q27544174)
action count
action filter_type
action find_reverse
entity Q27544174
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q27544174']
SELECT DISTINCT ( COUNT ( ?q ) AS ?d ) WHERE { ?q property:P702 resource:Q27544174 . ?q rdf:type ontology:Q181394 }
inositol polyphosphate multikinase YDR173C
action count
action filter_type
action find_reverse
entity inositol polyphosphate multikinase YDR173C
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'inositol polyphosphate multikinase YDR173C']
SELECT DISTINCT ( COUNT ( ?q ) AS ?d ) WHERE { ?q property:encoded_by resource:inositol_polyphosphate_multikinase_YDR173C . ?q rdf:type ontology:nutrient }
[]
nutrient
SYSTEM
1
Q27551238
(c(Q181394),P702,Q27544174)
action count
action filter_type
action find_reverse
entity Q27544174
relation P702
type Q181394
[ANSWER]
[{'concept': 'Q181394'}, 'P702', 'Q27544174']
SELECT DISTINCT ( COUNT ( ?q ) AS ?d ) WHERE { ?q property:P702 resource:Q27544174 . ?q rdf:type ontology:Q181394 }
inositol polyphosphate multikinase YDR173C
1
action count
action filter_type
action find_reverse
entity inositol polyphosphate multikinase YDR173C
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'inositol polyphosphate multikinase YDR173C']
SELECT DISTINCT ( COUNT ( ?q ) AS ?d ) WHERE { ?q property:encoded_by resource:inositol_polyphosphate_multikinase_YDR173C . ?q rdf:type ontology:nutrient }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q22269018
P702
Q181394
USER
What gene does hypothetical protein    NMB1630 encode ?
(c(Q181394),P702,Q22269018)
action filter_type
action find_reverse
entity Q22269018
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q22269018']
SELECT DISTINCT ?r WHERE { ?r property:P702 resource:Q22269018 . ?r rdf:type ontology:Q181394 }
hypothetical protein    NMB1630
action filter_type
action find_reverse
entity hypothetical protein    NMB1630
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'hypothetical protein    NMB1630']
SELECT DISTINCT ?r WHERE { ?r property:encoded_by resource:hypothetical_protein____NMB1630 . ?r rdf:type ontology:nutrient }
[]
nutrient
Q22272818
SYSTEM
hypothetical protein    NMB1630
Q22272818
(c(Q181394),P702,Q22269018)
action filter_type
action find_reverse
entity Q22269018
relation P702
type Q181394
Hypothetical protein NMB 1630 encodes the hypothetical protein NMB1630
[{'concept': 'Q181394'}, 'P702', 'Q22269018']
SELECT DISTINCT ?r WHERE { ?r property:P702 resource:Q22269018 . ?r rdf:type ontology:Q181394 }
hypothetical protein    NMB1630
Hypothetical protein NMB 1630 encodes the hypothetical protein NMB1630
hypothetical protein    NMB1630
action filter_type
action find_reverse
entity hypothetical protein    NMB1630
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'hypothetical protein    NMB1630']
SELECT DISTINCT ?r WHERE { ?r property:encoded_by resource:hypothetical_protein____NMB1630 . ?r rdf:type ontology:nutrient }
[]
Verification (Boolean) (All)
Verification|3 entities, all direct, 2 are query entities
Q22272818 Q22308461 Q22269018
P702
Q863908
USER
Does ribose ABC transporter, periplasmic ribose-binding subunit    PP_2454 and hypothetical protein    NMB1630 encode hypothetical protein    NMB1630 ?
(Q22272818,P702,Q22308461) (Q22272818,P702,Q22269018)
action is_in
entity Q22272818
action intersection
action find_reverse
entity Q22308461
relation P702
action find_reverse
entity Q22269018
relation P702
['Q22272818', 'P702', 'Q22308461'] ['Q22272818', 'P702', 'Q22269018']
ASK WHERE { resource:Q22272818 property:P702 resource:Q22308461 . resource:Q22272818 property:P702 resource:Q22269018 }
hypothetical protein    NMB1630 ribose ABC transporter, periplasmic ribose-binding subunit    PP_2454 hypothetical protein    NMB1630
action is_in
entity hypothetical protein    NMB1630
action intersection
action find_reverse
entity ribose ABC transporter, periplasmic ribose-binding subunit    PP_2454
relation encoded by
action find_reverse
entity hypothetical protein    NMB1630
relation encoded by
['hypothetical protein    NMB1630', 'encoded by', 'ribose ABC transporter, periplasmic ribose-binding subunit    PP_2454'] ['hypothetical protein    NMB1630', 'encoded by', 'hypothetical protein    NMB1630']
ASK WHERE { resource:hypothetical_protein____NMB1630 property:encoded_by resource:ribose_ABC_transporter,_periplasmic_ribose-binding_subunit____PP_2454 . resource:hypothetical_protein____NMB1630 property:encoded_by resource:hypothetical_protein____NMB1630 }
[]
nucleic acid sequence
SYSTEM
NO and YES respectively
(Q22272818,P702,Q22308461) (Q22272818,P702,Q22269018)
action is_in
entity Q22272818
action intersection
action find_reverse
entity Q22308461
relation P702
action find_reverse
entity Q22269018
relation P702
[ANSWER]
['Q22272818', 'P702', 'Q22308461'] ['Q22272818', 'P702', 'Q22269018']
ASK WHERE { resource:Q22272818 property:P702 resource:Q22308461 . resource:Q22272818 property:P702 resource:Q22269018 }
NO and YES respectively
action is_in
entity hypothetical protein    NMB1630
action intersection
action find_reverse
entity ribose ABC transporter, periplasmic ribose-binding subunit    PP_2454
relation encoded by
action find_reverse
entity hypothetical protein    NMB1630
relation encoded by
['hypothetical protein    NMB1630', 'encoded by', 'ribose ABC transporter, periplasmic ribose-binding subunit    PP_2454'] ['hypothetical protein    NMB1630', 'encoded by', 'hypothetical protein    NMB1630']
ASK WHERE { resource:hypothetical_protein____NMB1630 property:encoded_by resource:ribose_ABC_transporter,_periplasmic_ribose-binding_subunit____PP_2454 . resource:hypothetical_protein____NMB1630 property:encoded_by resource:hypothetical_protein____NMB1630 }
[]