Simple Question (Direct)
Simple Question
Q22257903
P682
Q1057
USER
What is the metabolic process that dihydrodipicolinate reductase    LBA0855 is involved in ?
(Q22257903,P682,c(Q1057))
action filter_type
action find
entity Q22257903
relation P682
type Q1057
['Q22257903', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?t WHERE { ?t rdf:type ontology:Q1057 . resource:Q22257903 property:P682 ?t }
dihydrodipicolinate reductase    LBA0855
action filter_type
action find
entity dihydrodipicolinate reductase    LBA0855
relation biological process
type metabolic process
['dihydrodipicolinate reductase    LBA0855', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?t WHERE { ?t rdf:type ontology:metabolic_process . resource:dihydrodipicolinate_reductase____LBA0855 property:biological_process ?t }
[]
metabolic process
Q14349764
SYSTEM
oxidation-reduction process
Q14349764
(Q22257903,P682,c(Q1057))
action filter_type
action find
entity Q22257903
relation P682
type Q1057
The metabolic process that dihydrodipicolinate reductase LBA0855 is involved in is h [ANSWER]
['Q22257903', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?t WHERE { ?t rdf:type ontology:Q1057 . resource:Q22257903 property:P682 ?t }
oxidation-reduction process
The metabolic process that dihydrodipicolinate reductase LBA0855 is involved in is h oxidation-reduction process
oxidation-reduction process
action filter_type
action find
entity dihydrodipicolinate reductase    LBA0855
relation biological process
type metabolic process
['dihydrodipicolinate reductase    LBA0855', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?t WHERE { ?t rdf:type ontology:metabolic_process . resource:dihydrodipicolinate_reductase____LBA0855 property:biological_process ?t }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q22257903
P703
Q631147
USER
Where is that nutrient found ?
(Q14349764,P703,c(Q631147))
action filter_type
action find
entity Q22257903
relation P703
type Q631147
['Q14349764', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?q WHERE { resource:Q22257903 property:P703 ?q . ?q rdf:type ontology:Q631147 }
dihydrodipicolinate reductase    LBA0855
action filter_type
action find
entity dihydrodipicolinate reductase    LBA0855
relation found in taxon
type infraspecific name
['oxidation-reduction process', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?q WHERE { resource:dihydrodipicolinate_reductase____LBA0855 property:found_in_taxon ?q . ?q rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102977
SYSTEM
Lactobacillus acidophilus NCFM
Q21102977
(Q14349764,P703,c(Q631147))
action filter_type
action find
entity Q22257903
relation P703
type Q631147
That nutrient is found in [ANSWER]
['Q14349764', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?q WHERE { resource:Q22257903 property:P703 ?q . ?q rdf:type ontology:Q631147 }
Lactobacillus acidophilus NCFM
That nutrient is found in Lactobacillus acidophilus NCFM
Lactobacillus acidophilus NCFM
action filter_type
action find
entity dihydrodipicolinate reductase    LBA0855
relation found in taxon
type infraspecific name
['oxidation-reduction process', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?q WHERE { resource:dihydrodipicolinate_reductase____LBA0855 property:found_in_taxon ?q . ?q rdf:type ontology:infraspecific_name }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q22257903
P702
Q863908
USER
What is the gene that encodes that nutrient ?
(Q21102977,P702,c(Q863908))
action filter_type
action find
entity Q22257903
relation P702
type Q863908
['Q21102977', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?k WHERE { resource:Q22257903 property:P702 ?k . ?k rdf:type ontology:Q863908 }
dihydrodipicolinate reductase    LBA0855
action filter_type
action find
entity dihydrodipicolinate reductase    LBA0855
relation encoded by
type nucleic acid sequence
['Lactobacillus acidophilus NCFM', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?k WHERE { resource:dihydrodipicolinate_reductase____LBA0855 property:encoded_by ?k . ?k rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q22238851
SYSTEM
4-hydroxy-tetrahydrodipicolinate reductase    LBA0855
Q22238851
(Q21102977,P702,c(Q863908))
action filter_type
action find
entity Q22257903
relation P702
type Q863908
The gene that encodes that nutrient is the 4-hydroxy-tetrahydrodipicolinate reductase LBA0855
['Q21102977', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?k WHERE { resource:Q22257903 property:P702 ?k . ?k rdf:type ontology:Q863908 }
4-hydroxy-tetrahydrodipicolinate reductase    LBA0855
The gene that encodes that nutrient is the 4-hydroxy-tetrahydrodipicolinate reductase LBA0855
4-hydroxy-tetrahydrodipicolinate reductase    LBA0855
action filter_type
action find
entity dihydrodipicolinate reductase    LBA0855
relation encoded by
type nucleic acid sequence
['Lactobacillus acidophilus NCFM', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?k WHERE { resource:dihydrodipicolinate_reductase____LBA0855 property:encoded_by ?k . ?k rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q22238851
P688
Q181394
USER
What is encoded by that nucleic acid sequence ?
(Q22238851,P688,c(Q181394))
action filter_type
action find
entity Q22238851
relation P688
type Q181394
['Q22238851', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?r WHERE { resource:Q22238851 property:P688 ?r . ?r rdf:type ontology:Q181394 }
4-hydroxy-tetrahydrodipicolinate reductase    LBA0855
action filter_type
action find
entity 4-hydroxy-tetrahydrodipicolinate reductase    LBA0855
relation encodes
type nutrient
['4-hydroxy-tetrahydrodipicolinate reductase    LBA0855', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?r WHERE { resource:4-hydroxy-tetrahydrodipicolinate_reductase____LBA0855 property:encodes ?r . ?r rdf:type ontology:nutrient }
[]
nutrient
Q22257903
SYSTEM
dihydrodipicolinate reductase    LBA0855
Q22257903
(Q22238851,P688,c(Q181394))
action filter_type
action find
entity Q22238851
relation P688
type Q181394
Dihydrodipicolinate reductase LBA0855 is encoded by that nucleic acid sequence
['Q22238851', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?r WHERE { resource:Q22238851 property:P688 ?r . ?r rdf:type ontology:Q181394 }
dihydrodipicolinate reductase    LBA0855
Dihydrodipicolinate reductase LBA0855 is encoded by that nucleic acid sequence
dihydrodipicolinate reductase    LBA0855
action filter_type
action find
entity 4-hydroxy-tetrahydrodipicolinate reductase    LBA0855
relation encodes
type nutrient
['4-hydroxy-tetrahydrodipicolinate reductase    LBA0855', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?r WHERE { resource:4-hydroxy-tetrahydrodipicolinate_reductase____LBA0855 property:encodes ?r . ?r rdf:type ontology:nutrient }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q22257903
P681
Q15989253
USER
Which is the cell component of that nutrient ?
(Q22257903,P681,c(Q15989253))
action filter_type
action find
entity Q22257903
relation P681
type Q15989253
['Q22257903', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?e WHERE { resource:Q22257903 property:P681 ?e . ?e rdf:type ontology:Q15989253 }
dihydrodipicolinate reductase    LBA0855
action filter_type
action find
entity dihydrodipicolinate reductase    LBA0855
relation cell component
type part
['dihydrodipicolinate reductase    LBA0855', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?e WHERE { resource:dihydrodipicolinate_reductase____LBA0855 property:cell_component ?e . ?e rdf:type ontology:part }
[]
part
Q79899
SYSTEM
cytoplasm
Q79899
(Q22257903,P681,c(Q15989253))
action filter_type
action find
entity Q22257903
relation P681
type Q15989253
[ANSWER] is the cell component of that nutrient
['Q22257903', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?e WHERE { resource:Q22257903 property:P681 ?e . ?e rdf:type ontology:Q15989253 }
cytoplasm
Cytoplasm is the cell component of that nutrient
cytoplasm
action filter_type
action find
entity dihydrodipicolinate reductase    LBA0855
relation cell component
type part
['dihydrodipicolinate reductase    LBA0855', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?e WHERE { resource:dihydrodipicolinate_reductase____LBA0855 property:cell_component ?e . ?e rdf:type ontology:part }
[]
Logical Reasoning (All)
Logical|Intersection|Single_Relation|Incomplete
Q21986183 Q22257903
P681
Q15989253
USER
And also NACHT, LRR and PYD domains-containing protein 1b allele 2
AND((Q22257903,P681,c(Q15989253)), (Q21986183,P681,c(Q15989253)))
action filter_type
action intersection
action find
entity Q22257903
relation P681
action find
entity Q21986183
relation P681
type Q15989253
{'AND': [['Q22257903', 'P681', {'concept': 'Q15989253'}], ['Q21986183', 'P681', {'concept': 'Q15989253'}]]}
SELECT DISTINCT ?t WHERE { resource:Q22257903 property:P681 ?t . resource:Q21986183 property:P681 ?t . ?t rdf:type ontology:Q15989253 }
NACHT, LRR and PYD domains-containing protein 1b allele 2 dihydrodipicolinate reductase    LBA0855
action filter_type
action intersection
action find
entity dihydrodipicolinate reductase    LBA0855
relation cell component
action find
entity NACHT, LRR and PYD domains-containing protein 1b allele 2
relation cell component
type part
{'AND': [['dihydrodipicolinate reductase    LBA0855', 'cell component', {'concept': 'part'}], ['NACHT, LRR and PYD domains-containing protein 1b allele 2', 'cell component', {'concept': 'part'}]]}
SELECT DISTINCT ?t WHERE { resource:dihydrodipicolinate_reductase____LBA0855 property:cell_component ?t . resource:NACHT,_LRR_and_PYD_domains-containing_protein_1b_allele_2 property:cell_component ?t . ?t rdf:type ontology:part }
[]
part
Q79899
SYSTEM
cytoplasm
Q79899
AND((Q22257903,P681,c(Q15989253)), (Q21986183,P681,c(Q15989253)))
action filter_type
action intersection
action find
entity Q22257903
relation P681
action find
entity Q21986183
relation P681
type Q15989253
[ANSWER]
{'AND': [['Q22257903', 'P681', {'concept': 'Q15989253'}], ['Q21986183', 'P681', {'concept': 'Q15989253'}]]}
SELECT DISTINCT ?t WHERE { resource:Q22257903 property:P681 ?t . resource:Q21986183 property:P681 ?t . ?t rdf:type ontology:Q15989253 }
cytoplasm
cytoplasm
action filter_type
action intersection
action find
entity dihydrodipicolinate reductase    LBA0855
relation cell component
action find
entity NACHT, LRR and PYD domains-containing protein 1b allele 2
relation cell component
type part
{'AND': [['dihydrodipicolinate reductase    LBA0855', 'cell component', {'concept': 'part'}], ['NACHT, LRR and PYD domains-containing protein 1b allele 2', 'cell component', {'concept': 'part'}]]}
SELECT DISTINCT ?t WHERE { resource:dihydrodipicolinate_reductase____LBA0855 property:cell_component ?t . resource:NACHT,_LRR_and_PYD_domains-containing_protein_1b_allele_2 property:cell_component ?t . ?t rdf:type ontology:part }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q181394 Q181394 Q8386
USER
How many nutrients do around 9 nutrients and drugs interact with ?
(c(Q181394)|c(Q8386),P129,c(Q181394))
action count
action approx
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
value 9
[[{'concept': 'Q181394'}, {'concept': 'Q8386'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?h ) AS ?l ) WHERE { FILTER ( ?a = 9 ) . { SELECT DISTINCT ( COUNT ( ?u ) AS ?a ) ?h WHERE { VALUES ( ?p ) { ( ontology:Q8386 ) ( ontology:Q181394 ) } . ?u rdf:type ?p } GROUP BY ?h } }
action count
action approx
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
value 9
[[{'concept': 'nutrient'}, {'concept': 'drug'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?h ) AS ?l ) WHERE { FILTER ( ?a = 9 ) . { SELECT DISTINCT ( COUNT ( ?u ) AS ?a ) ?h WHERE { VALUES ( ?p ) { ( ontology:drug ) ( ontology:nutrient ) } . ?u rdf:type ?p } GROUP BY ?h } }
[]
nutrient nutrient drug
SYSTEM
102
Q21116154 Q21173427 Q4847910 Q2271947 Q7671480 Q21497881 Q21173164 Q21120422 Q417057 Q21154358 Q1499998 Q7553281 Q420470 Q21172390 Q21107843 Q1084878 Q415287 Q7671479 Q7169506 Q415607 Q15323278 Q5038044 Q21109218 Q21122995 Q21496563 Q21107890 Q410798 Q254943 Q6414726 Q4847900 Q4847907 Q21116946 Q21114332 Q6901317 Q416601 Q5401858 Q5401857 Q22676679 Q21173381 Q21497890 Q21116162 Q21116164 Q2844056 Q5773155 Q21112690 Q22679015 Q21115334 Q14905969 Q21118353 Q21175110 Q21173406 Q21119818 Q5513985 Q409867 Q21114578 Q3454525 Q21114576 Q21131500 Q21498865 Q21123247 Q128861 Q21119156 Q2819188 Q21119157 Q4897175 Q21102111 Q412214 Q21132917 Q21132915 Q6592965 Q905000 Q14912057 Q8083989 Q21497878 Q21122997 Q3062781 Q12746120 Q21138907 Q5629167 Q21115815 Q21115816 Q21115819 Q21110532 Q21108125 Q5446453 Q7834290 Q21114582 Q21497939 Q3454531 Q21497937 Q21109462 Q3415811 Q424401 Q21130911 Q587961 Q21096394 Q21496564 Q21109359 Q6592976 Q21102146 Q5520260 Q21134814
(c(Q181394)|c(Q8386),P129,c(Q181394))
action count
action approx
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
value 9
[ANSWER]
[[{'concept': 'Q181394'}, {'concept': 'Q8386'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?h ) AS ?l ) WHERE { FILTER ( ?a = 9 ) . { SELECT DISTINCT ( COUNT ( ?u ) AS ?a ) ?h WHERE { VALUES ( ?p ) { ( ontology:Q8386 ) ( ontology:Q181394 ) } . ?u rdf:type ?p } GROUP BY ?h } }
Adenosine receptor A3 Histone deacetylase 9 Muscarinic acetylcholine receptor M2 Sodium-dependent dopamine transporter Transient receptor potential cation channel subfamily M member 4 G protein-activated inward rectifier potassium channel 4 Carbonic anhydrase 1 Prostaglandin E2 receptor EP4 subtype Vitamin D3 receptor Histone deacetylase 3 Voltage-dependent L-type calcium channel subunit alpha-1C Solute carrier family 12 member 3 Cystic fibrosis transmembrane conductance regulator Vascular endothelial growth factor receptor 2 Potassium voltage-gated channel subfamily A member 10 Peroxisome proliferator-activated receptor gamma Aromatase Transient receptor potential cation channel subfamily M member 3 Peroxisome proliferator-activated receptor alpha 3-hydroxy-3-methylglutaryl-coenzyme A reductase Transient receptor potential cation channel subfamily A member 1 Carbonic anhydrase 4 Serine/threonine-protein kinase B-raf Melatonin receptor type 1A Potassium voltage-gated channel subfamily C member 1 Potassium voltage-gated channel subfamily A member 7 cGMP-specific 3',5'-cyclic phosphodiesterase Retinoic acid receptor alpha ATP-sensitive inward rectifier potassium channel 11 Muscarinic acetylcholine receptor M1 Muscarinic acetylcholine receptor M4 Carbonic anhydrase 12 Tubulin beta chain Amine oxidase [flavin-containing] A Androgen receptor Estrogen receptor Estrogen receptor beta Acetylcholinesterase Histone deacetylase 6 ATP-sensitive inward rectifier potassium channel 8 Adenosine receptor A2a Adenosine receptor A2b Muscarinic acetylcholine receptor M3 Histone deacetylase 2 fMet-Leu-Phe receptor Cholinesterase Delta-type opioid receptor Potassium voltage-gated channel subfamily A member 1 Vascular endothelial growth factor receptor 3 Vitamin K epoxide reductase complex subunit 1 Histone deacetylase 8 Intermediate conductance calcium-activated potassium channel protein 4 Gonadotropin-releasing hormone receptor Nuclear receptor subfamily 1 group I member 2 Gamma-aminobutyric acid receptor subunit alpha-3 Progesterone receptor Gamma-aminobutyric acid receptor subunit alpha-5 D(1B) dopamine receptor Beta-3 adrenergic receptor cGMP-inhibited 3',5'-cyclic phosphodiesterase A Angiotensin-converting enzyme Inosine-5'-monophosphate dehydrogenase 2 Type-1 angiotensin II receptor Inosine-5'-monophosphate dehydrogenase 1 Beta-3 adrenergic receptor Acid-sensing ion channel 3 Dipeptidyl peptidase 4 Carbonic anhydrase 14 Carbonic anhydrase 7 Retinoic acid receptor gamma Potassium voltage-gated channel subfamily H member 2 ATP-sensitive inward rectifier potassium channel 11 Kappa-type opioid receptor G protein-activated inward rectifier potassium channel 2 Melatonin receptor type 1B Adenosine receptor A1 Muscarinic acetylcholine receptor M5 Ryanodine receptor 1 Histone deacetylase 1 Glutamate receptor ionotropic, NMDA 2A Glutamate receptor ionotropic, NMDA 2B Glutamate receptor ionotropic, NMDA 2C Potassium voltage-gated channel subfamily H member 1 5-hydroxytryptamine receptor 3A Fibroblast growth factor receptor 1 Transient receptor potential cation channel subfamily A member 1 Gamma-aminobutyric acid receptor subunit alpha-2 5-hydroxytryptamine receptor 7 Mineralocorticoid receptor 5-hydroxytryptamine receptor 5A Amine oxidase [flavin-containing] B Ryanodine receptor 2 Epidermal growth factor receptor Glutamate receptor ionotropic, NMDA 2D Tyrosine-protein kinase ABL1 Potassium voltage-gated channel subfamily A member 5 Potassium voltage-gated channel subfamily A member 7 5-hydroxytryptamine receptor 5A Retinoic acid receptor beta Voltage-dependent L-type calcium channel subunit alpha-1D Gamma-aminobutyric acid receptor subunit alpha-1 Equilibrative nucleoside transporter 4
102
action count
action approx
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
value 9
[[{'concept': 'nutrient'}, {'concept': 'drug'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?h ) AS ?l ) WHERE { FILTER ( ?a = 9 ) . { SELECT DISTINCT ( COUNT ( ?u ) AS ?a ) ?h WHERE { VALUES ( ?p ) { ( ontology:drug ) ( ontology:nutrient ) } . ?u rdf:type ?p } GROUP BY ?h } }
[]