Simple Question (Direct)
Simple Question
Q27549528
P681
Q15989253
USER
Which is the part that is a component of Arf family guanine nucleotide exchange factor SBH1 YER087C-B ?
(Q27549528,P681,c(Q15989253))
action filter_type
action find
entity Q27549528
relation P681
type Q15989253
['Q27549528', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?z WHERE { resource:Q27549528 property:P681 ?z . ?z rdf:type ontology:Q15989253 }
Arf family guanine nucleotide exchange factor SBH1 YER087C-B
action filter_type
action find
entity Arf family guanine nucleotide exchange factor SBH1 YER087C-B
relation cell component
type part
['Arf family guanine nucleotide exchange factor SBH1 YER087C-B', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?z WHERE { resource:Arf_family_guanine_nucleotide_exchange_factor_SBH1_YER087C-B property:cell_component ?z . ?z rdf:type ontology:part }
[]
part
Q14349455
SYSTEM
membrane
Q14349455
(Q27549528,P681,c(Q15989253))
action filter_type
action find
entity Q27549528
relation P681
type Q15989253
The [ANSWER] is the part that is a component of Arf family guanine nucleotide exchange factor SBH1 YER087C-B
['Q27549528', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?z WHERE { resource:Q27549528 property:P681 ?z . ?z rdf:type ontology:Q15989253 }
membrane
The membrane is the part that is a component of Arf family guanine nucleotide exchange factor SBH1 YER087C-B
membrane
action filter_type
action find
entity Arf family guanine nucleotide exchange factor SBH1 YER087C-B
relation cell component
type part
['Arf family guanine nucleotide exchange factor SBH1 YER087C-B', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?z WHERE { resource:Arf_family_guanine_nucleotide_exchange_factor_SBH1_YER087C-B property:cell_component ?z . ?z rdf:type ontology:part }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q27549528
P688
Q863908
USER
Which nucleic acid sequence encodes Arf family guanine nucleotide exchange factor SBH1 YER087C-B ?
(c(Q863908),P688,Q27549528)
action filter_type
action find_reverse
entity Q27549528
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q27549528']
SELECT DISTINCT ?i WHERE { ?i rdf:type ontology:Q863908 . ?i property:P688 resource:Q27549528 }
Arf family guanine nucleotide exchange factor SBH1 YER087C-B
action filter_type
action find_reverse
entity Arf family guanine nucleotide exchange factor SBH1 YER087C-B
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Arf family guanine nucleotide exchange factor SBH1 YER087C-B']
SELECT DISTINCT ?i WHERE { ?i rdf:type ontology:nucleic_acid_sequence . ?i property:encodes resource:Arf_family_guanine_nucleotide_exchange_factor_SBH1_YER087C-B }
[]
nucleic acid sequence
Q27542431
SYSTEM
Arf family guanine nucleotide exchange factor SBH1 YER087C-B
Q27542431
(c(Q863908),P688,Q27549528)
action filter_type
action find_reverse
entity Q27549528
relation P688
type Q863908
[ANSWER] encodes [ANSWER]
[{'concept': 'Q863908'}, 'P688', 'Q27549528']
SELECT DISTINCT ?i WHERE { ?i rdf:type ontology:Q863908 . ?i property:P688 resource:Q27549528 }
Arf family guanine nucleotide exchange factor SBH1 YER087C-B
Arf family guanine nucleotide exchange factor SBH1 YER087C-B encodes Arf family guanine nucleotide exchange factor SBH1 YER087C-B
Arf family guanine nucleotide exchange factor SBH1 YER087C-B
action filter_type
action find_reverse
entity Arf family guanine nucleotide exchange factor SBH1 YER087C-B
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Arf family guanine nucleotide exchange factor SBH1 YER087C-B']
SELECT DISTINCT ?i WHERE { ?i rdf:type ontology:nucleic_acid_sequence . ?i property:encodes resource:Arf_family_guanine_nucleotide_exchange_factor_SBH1_YER087C-B }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q27549528
P702
Q863908
USER
Which nucleic acid sequence encodes Arf family guanine nucleotide exchange factor SBH1 YER087C-B ?
(Q27549528,P702,c(Q863908))
action filter_type
action find
entity Q27549528
relation P702
type Q863908
['Q27549528', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?u WHERE { resource:Q27549528 property:P702 ?u . ?u rdf:type ontology:Q863908 }
Arf family guanine nucleotide exchange factor SBH1 YER087C-B
action filter_type
action find
entity Arf family guanine nucleotide exchange factor SBH1 YER087C-B
relation encoded by
type nucleic acid sequence
['Arf family guanine nucleotide exchange factor SBH1 YER087C-B', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?u WHERE { resource:Arf_family_guanine_nucleotide_exchange_factor_SBH1_YER087C-B property:encoded_by ?u . ?u rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q27542431
SYSTEM
Arf family guanine nucleotide exchange factor SBH1 YER087C-B
Q27542431
(Q27549528,P702,c(Q863908))
action filter_type
action find
entity Q27549528
relation P702
type Q863908
[ANSWER] encodes [ANSWER]
['Q27549528', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?u WHERE { resource:Q27549528 property:P702 ?u . ?u rdf:type ontology:Q863908 }
Arf family guanine nucleotide exchange factor SBH1 YER087C-B
Arf family guanine nucleotide exchange factor SBH1 YER087C-B encodes Arf family guanine nucleotide exchange factor SBH1 YER087C-B
Arf family guanine nucleotide exchange factor SBH1 YER087C-B
action filter_type
action find
entity Arf family guanine nucleotide exchange factor SBH1 YER087C-B
relation encoded by
type nucleic acid sequence
['Arf family guanine nucleotide exchange factor SBH1 YER087C-B', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?u WHERE { resource:Arf_family_guanine_nucleotide_exchange_factor_SBH1_YER087C-B property:encoded_by ?u . ?u rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q27754409
Q863908
USER
And also tell me about hypothetical protein    SCO2978?
(Q27754409,P702,c(Q863908))
action filter_type
action find
entity Q27754409
relation P702
type Q863908
['Q27754409', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:Q863908 . resource:Q27754409 property:P702 ?x }
hypothetical protein    SCO2978
action filter_type
action find
entity hypothetical protein    SCO2978
relation encoded by
type nucleic acid sequence
['hypothetical protein    SCO2978', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:nucleic_acid_sequence . resource:hypothetical_protein____SCO2978 property:encoded_by ?x }
[]
nucleic acid sequence
Q23292694
SYSTEM
hypothetical protein    SCO2978
Q23292694
(Q27754409,P702,c(Q863908))
action filter_type
action find
entity Q27754409
relation P702
type Q863908
[ANSWER]
['Q27754409', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:Q863908 . resource:Q27754409 property:P702 ?x }
hypothetical protein    SCO2978
hypothetical protein    SCO2978
action filter_type
action find
entity hypothetical protein    SCO2978
relation encoded by
type nucleic acid sequence
['hypothetical protein    SCO2978', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:nucleic_acid_sequence . resource:hypothetical_protein____SCO2978 property:encoded_by ?x }
[]
Verification (Boolean) (All)
Verification|3 entities, 2 direct, 2(direct) are query entities, subject is indirect
Q23292694 Q21102988 Q16993290
P703
Q631147
USER
Does that nucleic acid sequence species belongs to the taxon Streptomyces coelicolor A3(2) and Ulmus americana 'Deadfree' ?
(Q23292694,P703,Q21102988) (Q23292694,P703,Q16993290)
action is_in
entity Q23292694
action intersection
action find_reverse
entity Q21102988
relation P703
action find_reverse
entity Q16993290
relation P703
['Q23292694', 'P703', 'Q21102988'] ['Q23292694', 'P703', 'Q16993290']
ASK WHERE { resource:Q23292694 property:P703 resource:Q21102988 . resource:Q23292694 property:P703 resource:Q16993290 }
hypothetical protein    SCO2978 Streptomyces coelicolor A3(2) Ulmus americana 'Deadfree'
action is_in
entity hypothetical protein    SCO2978
action intersection
action find_reverse
entity Streptomyces coelicolor A3(2)
relation found in taxon
action find_reverse
entity Ulmus americana 'Deadfree'
relation found in taxon
['hypothetical protein    SCO2978', 'found in taxon', 'Streptomyces coelicolor A3(2)'] ['hypothetical protein    SCO2978', 'found in taxon', "Ulmus americana 'Deadfree'"]
ASK WHERE { resource:hypothetical_protein____SCO2978 property:found_in_taxon resource:Streptomyces_coelicolor_A3(2) . resource:hypothetical_protein____SCO2978 property:found_in_taxon resource:Ulmus_americana_'Deadfree' }
[]
infraspecific name
SYSTEM
YES and NO respectively
(Q23292694,P703,Q21102988) (Q23292694,P703,Q16993290)
action is_in
entity Q23292694
action intersection
action find_reverse
entity Q21102988
relation P703
action find_reverse
entity Q16993290
relation P703
[ANSWER]
['Q23292694', 'P703', 'Q21102988'] ['Q23292694', 'P703', 'Q16993290']
ASK WHERE { resource:Q23292694 property:P703 resource:Q21102988 . resource:Q23292694 property:P703 resource:Q16993290 }
YES and NO respectively
action is_in
entity hypothetical protein    SCO2978
action intersection
action find_reverse
entity Streptomyces coelicolor A3(2)
relation found in taxon
action find_reverse
entity Ulmus americana 'Deadfree'
relation found in taxon
['hypothetical protein    SCO2978', 'found in taxon', 'Streptomyces coelicolor A3(2)'] ['hypothetical protein    SCO2978', 'found in taxon', "Ulmus americana 'Deadfree'"]
ASK WHERE { resource:hypothetical_protein____SCO2978 property:found_in_taxon resource:Streptomyces_coelicolor_A3(2) . resource:hypothetical_protein____SCO2978 property:found_in_taxon resource:Ulmus_americana_'Deadfree' }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q27542431 Q27549528
P688
Q181394
USER
Is Arf family guanine nucleotide exchange factor SBH1 YER087C-B encoded by Arf family guanine nucleotide exchange factor SBH1 YER087C-B ?
(Q27542431,P688,Q27549528)
action is_in
entity Q27549528
action find
entity Q27542431
relation P688
['Q27542431', 'P688', 'Q27549528']
ASK WHERE { resource:Q27542431 property:P688 resource:Q27549528 }
Arf family guanine nucleotide exchange factor SBH1 YER087C-B Arf family guanine nucleotide exchange factor SBH1 YER087C-B
action is_in
entity Arf family guanine nucleotide exchange factor SBH1 YER087C-B
action find
entity Arf family guanine nucleotide exchange factor SBH1 YER087C-B
relation encodes
['Arf family guanine nucleotide exchange factor SBH1 YER087C-B', 'encodes', 'Arf family guanine nucleotide exchange factor SBH1 YER087C-B']
ASK WHERE { resource:Arf_family_guanine_nucleotide_exchange_factor_SBH1_YER087C-B property:encodes resource:Arf_family_guanine_nucleotide_exchange_factor_SBH1_YER087C-B }
[]
nutrient
SYSTEM
YES
(Q27542431,P688,Q27549528)
action is_in
entity Q27549528
action find
entity Q27542431
relation P688
[ANSWER]
['Q27542431', 'P688', 'Q27549528']
ASK WHERE { resource:Q27542431 property:P688 resource:Q27549528 }
Yes
action is_in
entity Arf family guanine nucleotide exchange factor SBH1 YER087C-B
action find
entity Arf family guanine nucleotide exchange factor SBH1 YER087C-B
relation encodes
['Arf family guanine nucleotide exchange factor SBH1 YER087C-B', 'encodes', 'Arf family guanine nucleotide exchange factor SBH1 YER087C-B']
ASK WHERE { resource:Arf_family_guanine_nucleotide_exchange_factor_SBH1_YER087C-B property:encodes resource:Arf_family_guanine_nucleotide_exchange_factor_SBH1_YER087C-B }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23151849 Q23292694
P703
Q631147
USER
Which infraspecific names are hypothetical protein    SCO2978 or thiamin-monophosphate kinase    VF_0705 found ?
OR((Q23292694,P703,c(Q631147)), (Q23151849,P703,c(Q631147)))
action filter_type
action union
action find
entity Q23292694
relation P703
action find
entity Q23151849
relation P703
type Q631147
{'OR': [['Q23292694', 'P703', {'concept': 'Q631147'}], ['Q23151849', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?o WHERE { { VALUES ( ?u ) { ( resource:Q23292694 ) ( resource:Q23151849 ) } . ?u property:P703 ?o } . ?o rdf:type ontology:Q631147 }
thiamin-monophosphate kinase    VF_0705 hypothetical protein    SCO2978
action filter_type
action union
action find
entity hypothetical protein    SCO2978
relation found in taxon
action find
entity thiamin-monophosphate kinase    VF_0705
relation found in taxon
type infraspecific name
{'OR': [['hypothetical protein    SCO2978', 'found in taxon', {'concept': 'infraspecific name'}], ['thiamin-monophosphate kinase    VF_0705', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?o WHERE { { VALUES ( ?u ) { ( resource:hypothetical_protein____SCO2978 ) ( resource:thiamin-monophosphate_kinase____VF_0705 ) } . ?u property:found_in_taxon ?o } . ?o rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102946 Q21102988
SYSTEM
Vibrio fischeri ES114, Streptomyces coelicolor A3(2)
Q21102946 Q21102988
OR((Q23292694,P703,c(Q631147)), (Q23151849,P703,c(Q631147)))
action filter_type
action union
action find
entity Q23292694
relation P703
action find
entity Q23151849
relation P703
type Q631147
[ANSWERS] are hypothetical protein SCO2978 or thiamin-monophosphate kinase VF_0705 found
{'OR': [['Q23292694', 'P703', {'concept': 'Q631147'}], ['Q23151849', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?o WHERE { { VALUES ( ?u ) { ( resource:Q23292694 ) ( resource:Q23151849 ) } . ?u property:P703 ?o } . ?o rdf:type ontology:Q631147 }
Vibrio fischeri ES114 Streptomyces coelicolor A3(2)
Vibrio fischeri ES114 and Streptomyces coelicolor A3(2) are hypothetical protein SCO2978 or thiamin-monophosphate kinase VF_0705 found
Vibrio fischeri ES114 Streptomyces coelicolor A3(2)
action filter_type
action union
action find
entity hypothetical protein    SCO2978
relation found in taxon
action find
entity thiamin-monophosphate kinase    VF_0705
relation found in taxon
type infraspecific name
{'OR': [['hypothetical protein    SCO2978', 'found in taxon', {'concept': 'infraspecific name'}], ['thiamin-monophosphate kinase    VF_0705', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?o WHERE { { VALUES ( ?u ) { ( resource:hypothetical_protein____SCO2978 ) ( resource:thiamin-monophosphate_kinase____VF_0705 ) } . ?u property:found_in_taxon ?o } . ?o rdf:type ontology:infraspecific_name }
[]