Simple Question (Direct)
Simple Question
Q23589061
P681
Q15989253
USER
Which part is a component of NADH-quinone oxidoreductase, H subunit NuoH    MAB_2141 ?
(Q23589061,P681,c(Q15989253))
action filter_type
action find
entity Q23589061
relation P681
type Q15989253
['Q23589061', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?k WHERE { resource:Q23589061 property:P681 ?k . ?k rdf:type ontology:Q15989253 }
NADH-quinone oxidoreductase, H subunit NuoH    MAB_2141
action filter_type
action find
entity NADH-quinone oxidoreductase, H subunit NuoH    MAB_2141
relation cell component
type part
['NADH-quinone oxidoreductase, H subunit NuoH    MAB_2141', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?k WHERE { resource:NADH-quinone_oxidoreductase,_H_subunit_NuoH____MAB_2141 property:cell_component ?k . ?k rdf:type ontology:part }
[]
part
Q14349455
SYSTEM
membrane
Q14349455
(Q23589061,P681,c(Q15989253))
action filter_type
action find
entity Q23589061
relation P681
type Q15989253
[ANSWER] is a component of NADH-quinone oxidoreductase, H subunit NuoH MAB_2141
['Q23589061', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?k WHERE { resource:Q23589061 property:P681 ?k . ?k rdf:type ontology:Q15989253 }
membrane
Membrane is a component of NADH-quinone oxidoreductase, H subunit NuoH MAB_2141
membrane
action filter_type
action find
entity NADH-quinone oxidoreductase, H subunit NuoH    MAB_2141
relation cell component
type part
['NADH-quinone oxidoreductase, H subunit NuoH    MAB_2141', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?k WHERE { resource:NADH-quinone_oxidoreductase,_H_subunit_NuoH____MAB_2141 property:cell_component ?k . ?k rdf:type ontology:part }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23589061
P682
Q1057
USER
Which metabolic process is that nutrient involved in ?
(Q14349455,P682,c(Q1057))
action filter_type
action find
entity Q23589061
relation P682
type Q1057
['Q14349455', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:Q1057 . resource:Q23589061 property:P682 ?j }
NADH-quinone oxidoreductase, H subunit NuoH    MAB_2141
action filter_type
action find
entity NADH-quinone oxidoreductase, H subunit NuoH    MAB_2141
relation biological process
type metabolic process
['membrane', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:metabolic_process . resource:NADH-quinone_oxidoreductase,_H_subunit_NuoH____MAB_2141 property:biological_process ?j }
[]
metabolic process
Q14349764
SYSTEM
oxidation-reduction process
Q14349764
(Q14349455,P682,c(Q1057))
action filter_type
action find
entity Q23589061
relation P682
type Q1057
That nutrient is an [ANSWER]
['Q14349455', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:Q1057 . resource:Q23589061 property:P682 ?j }
oxidation-reduction process
That nutrient is an oxidation-reduction process
oxidation-reduction process
action filter_type
action find
entity NADH-quinone oxidoreductase, H subunit NuoH    MAB_2141
relation biological process
type metabolic process
['membrane', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:metabolic_process . resource:NADH-quinone_oxidoreductase,_H_subunit_NuoH____MAB_2141 property:biological_process ?j }
[]
Comparative Reasoning (All)
Comparative|More/Less|Single entity type|Indirect
P682
Q1057 Q181394
USER
Which metabolic processes are a biological processes that less number of nutrients are involved in than that metabolic process ?
(c(Q181394),P682,c(Q1057))
action less
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
action count
action filter_type
action find_reverse
entity Q14349764
relation P682
type Q181394
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?c WHERE { { SELECT DISTINCT ?c ( COUNT ( ?d ) AS ?b ) WHERE { ?d property:P682 ?c . ?d rdf:type ontology:Q181394 . ?c rdf:type ontology:Q1057 } GROUP BY ?c } . FILTER ( ?b < ?p ) . { SELECT DISTINCT ( COUNT ( ?n ) AS ?p ) WHERE { ?n rdf:type ontology:Q181394 . ?n property:P682 resource:Q14349764 } } }
action less
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
action count
action filter_type
action find_reverse
entity oxidation-reduction process
relation biological process
type nutrient
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?c WHERE { { SELECT DISTINCT ?c ( COUNT ( ?d ) AS ?b ) WHERE { ?d property:biological_process ?c . ?d rdf:type ontology:nutrient . ?c rdf:type ontology:metabolic_process } GROUP BY ?c } . FILTER ( ?b < ?p ) . { SELECT DISTINCT ( COUNT ( ?n ) AS ?p ) WHERE { ?n rdf:type ontology:nutrient . ?n property:biological_process resource:oxidation-reduction_process } } }
[]
metabolic process nutrient
Q22251129 Q14905693 Q133895
SYSTEM
proteolysis in other organism, translational initiation, tricarboxylic acid cycle
Q14864889 Q14907628 Q14913194 Q22274727 Q22251129 Q14905693 Q14860777 Q21134382 Q21097138 Q14819379 Q21759902 Q21133617 Q133895 Q21157940 Q21116483 Q14863351 Q21102358 Q21114210 Q14907178 Q21121151 Q14880758 Q21761098 Q14762260 Q22275051 Q21100626 Q14913439 Q14916189 Q14349667 Q21159531 Q21111970 Q898365 Q22274640 Q22279483 Q21119973 Q14865941 Q22282595 Q14907180 Q14907181 Q14905125 Q21096256 Q14863432 Q14902250 Q21124879 Q14909347 Q15313450 Q179924 Q21101220 Q21095286 Q14863986 Q14358591 Q838181 Q21116485 Q14859896 Q21103172 Q22276072 Q14914233 Q14897831 Q14645736 Q14864262 Q14859628 Q14819787 Q21119193 Q22274791 Q14819781 Q22279537 Q22283508 Q14327719 Q22279533 Q21124620 Q14860507 Q21112195 Q14890104 Q14864417 Q14864414 Q21759328 Q900386 Q14912265 Q21760838
(c(Q181394),P682,c(Q1057))
action less
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
action count
action filter_type
action find_reverse
entity Q14349764
relation P682
type Q181394
[ANSWERS] are a biological processes that less number of nutrients are involved in than that metabolic process
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?c WHERE { { SELECT DISTINCT ?c ( COUNT ( ?d ) AS ?b ) WHERE { ?d property:P682 ?c . ?d rdf:type ontology:Q181394 . ?c rdf:type ontology:Q1057 } GROUP BY ?c } . FILTER ( ?b < ?p ) . { SELECT DISTINCT ( COUNT ( ?n ) AS ?p ) WHERE { ?n rdf:type ontology:Q181394 . ?n property:P682 resource:Q14349764 } } }
cellular aromatic compound metabolic process multicellular organism metabolic process cellular ketone body metabolic process secondary metabolic process proteolysis in other organism translational initiation hormone biosynthetic process cofactor metabolic process cellular aldehyde metabolic process one-carbon metabolic process carbon fixation actin modification tricarboxylic acid cycle nitrobenzene metabolic process lymphotoxin A biosynthetic process signal transduction by protein phosphorylation sulfur compound metabolic process regulation of translational initiation by eIF2 alpha dephosphorylation interleukin-2 biosynthetic process reactive nitrogen species metabolic process nucleobase-containing compound metabolic process photosynthesis carbohydrate metabolic process halogenated hydrocarbon metabolic process peptidyl-lysine modification to peptidyl-hypusine organophosphate metabolic process organic acid metabolic process lipid metabolic process selenium compound metabolic process reactive oxygen species biosynthetic process glycosylation cellular biosynthetic process cellular macromolecule metabolic process oxygen metabolic process connective tissue growth factor biosynthetic process ketone body metabolic process interleukin-13 biosynthetic process granulocyte macrophage colony-stimulating factor biosynthetic process neurotransmitter metabolic process cellular carbohydrate metabolic process reactive oxygen species metabolic process telomere maintenance via semi-conservative replication interleukin-8 biosynthetic process flavonoid metabolic process methylation-dependent chromatin silencing bioluminescence wax biosynthetic process amyloid fibril formation hormone catabolic process xenobiotic metabolic process respiratory burst interleukin-6 biosynthetic process cellular amino acid metabolic process DNA protection glycosyl compound metabolic process phosphatidic acid metabolic process isotype switching thyroid hormone metabolic process protein metabolic process cellular lipid metabolic process peptide hormone processing cellular modified amino acid metabolic process organic cyclic compound metabolic process generation of precursor metabolites and energy viral RNA genome replication IRES-dependent viral translational initiation small molecule metabolic process transposon integration transposition, DNA-mediated receptor internalization patched ligand maturation toxin metabolic process heterocycle metabolic process drug metabolic process cellular catabolic process demethylation cellular ketone metabolic process phosphorus metabolic process
Proteolysis in other organism, translational initiation and tricarboxylic acid cycle are a biological processes that less number of nutrients are involved in than that metabolic process
proteolysis in other organism translational initiation tricarboxylic acid cycle
action less
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
action count
action filter_type
action find_reverse
entity oxidation-reduction process
relation biological process
type nutrient
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?c WHERE { { SELECT DISTINCT ?c ( COUNT ( ?d ) AS ?b ) WHERE { ?d property:biological_process ?c . ?d rdf:type ontology:nutrient . ?c rdf:type ontology:metabolic_process } GROUP BY ?c } . FILTER ( ?b < ?p ) . { SELECT DISTINCT ( COUNT ( ?n ) AS ?p ) WHERE { ?n rdf:type ontology:nutrient . ?n property:biological_process resource:oxidation-reduction_process } } }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23589061
P703
Q16521
USER
Which taxon is NADH-quinone oxidoreductase, H subunit NuoH    MAB_2141 found in ?
(Q23589061,P703,c(Q16521))
action filter_type
action find
entity Q23589061
relation P703
type Q16521
['Q23589061', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?y WHERE { resource:Q23589061 property:P703 ?y . ?y rdf:type ontology:Q16521 }
NADH-quinone oxidoreductase, H subunit NuoH    MAB_2141
action filter_type
action find
entity NADH-quinone oxidoreductase, H subunit NuoH    MAB_2141
relation found in taxon
type taxon
['NADH-quinone oxidoreductase, H subunit NuoH    MAB_2141', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?y WHERE { resource:NADH-quinone_oxidoreductase,_H_subunit_NuoH____MAB_2141 property:found_in_taxon ?y . ?y rdf:type ontology:taxon }
[]
taxon
Q6946978
SYSTEM
Mycobacterium abscessus
Q6946978
(Q23589061,P703,c(Q16521))
action filter_type
action find
entity Q23589061
relation P703
type Q16521
[ANSWER] is NADH-quinone oxidoreductase, H subunit NuoH MAB_2141 found in
['Q23589061', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?y WHERE { resource:Q23589061 property:P703 ?y . ?y rdf:type ontology:Q16521 }
Mycobacterium abscessus
Mycobacterium abscessus is NADH-quinone oxidoreductase, H subunit NuoH MAB_2141 found in
Mycobacterium abscessus
action filter_type
action find
entity NADH-quinone oxidoreductase, H subunit NuoH    MAB_2141
relation found in taxon
type taxon
['NADH-quinone oxidoreductase, H subunit NuoH    MAB_2141', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?y WHERE { resource:NADH-quinone_oxidoreductase,_H_subunit_NuoH____MAB_2141 property:found_in_taxon ?y . ?y rdf:type ontology:taxon }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q24085911
Q16521
USER
And how about hypothetical protein    CT0705?
(Q24085911,P703,c(Q16521))
action filter_type
action find
entity Q24085911
relation P703
type Q16521
['Q24085911', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?l WHERE { resource:Q24085911 property:P703 ?l . ?l rdf:type ontology:Q16521 }
hypothetical protein    CT0705
action filter_type
action find
entity hypothetical protein    CT0705
relation found in taxon
type taxon
['hypothetical protein    CT0705', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?l WHERE { resource:hypothetical_protein____CT0705 property:found_in_taxon ?l . ?l rdf:type ontology:taxon }
[]
taxon
Q21397889
SYSTEM
Chlorobium tepidum TLS
Q21397889
(Q24085911,P703,c(Q16521))
action filter_type
action find
entity Q24085911
relation P703
type Q16521
[ANSWER]
['Q24085911', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?l WHERE { resource:Q24085911 property:P703 ?l . ?l rdf:type ontology:Q16521 }
Chlorobium tepidum TLS
Chlorobium tepidum TLS
action filter_type
action find
entity hypothetical protein    CT0705
relation found in taxon
type taxon
['hypothetical protein    CT0705', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?l WHERE { resource:hypothetical_protein____CT0705 property:found_in_taxon ?l . ?l rdf:type ontology:taxon }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q24085911
P702
Q181394
USER
What is the gene that is encoded by that nucleic acid sequence ?
(c(Q181394),P702,Q21397889)
action filter_type
action find_reverse
entity Q24085911
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q21397889']
SELECT DISTINCT ?y WHERE { ?y property:P702 resource:Q24085911 . ?y rdf:type ontology:Q181394 }
hypothetical protein    CT0705
action filter_type
action find_reverse
entity hypothetical protein    CT0705
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'Chlorobium tepidum TLS']
SELECT DISTINCT ?y WHERE { ?y property:encoded_by resource:hypothetical_protein____CT0705 . ?y rdf:type ontology:nutrient }
[]
nutrient
Q23470037
SYSTEM
hypothetical protein    CT0705
Q23470037
(c(Q181394),P702,Q21397889)
action filter_type
action find_reverse
entity Q24085911
relation P702
type Q181394
The gene that is encoded by that nucleic acid sequence is the hypothetical protein CT0705
[{'concept': 'Q181394'}, 'P702', 'Q21397889']
SELECT DISTINCT ?y WHERE { ?y property:P702 resource:Q24085911 . ?y rdf:type ontology:Q181394 }
hypothetical protein    CT0705
The gene that is encoded by that nucleic acid sequence is the hypothetical protein CT0705
hypothetical protein    CT0705
action filter_type
action find_reverse
entity hypothetical protein    CT0705
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'Chlorobium tepidum TLS']
SELECT DISTINCT ?y WHERE { ?y property:encoded_by resource:hypothetical_protein____CT0705 . ?y rdf:type ontology:nutrient }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q24085911
P688
Q181394
USER
What is encoded by that nucleic acid sequence ?
(Q23470037,P688,c(Q181394))
action filter_type
action find
entity Q24085911
relation P688
type Q181394
['Q23470037', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?a WHERE { resource:Q24085911 property:P688 ?a . ?a rdf:type ontology:Q181394 }
hypothetical protein    CT0705
action filter_type
action find
entity hypothetical protein    CT0705
relation encodes
type nutrient
['hypothetical protein    CT0705', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?a WHERE { resource:hypothetical_protein____CT0705 property:encodes ?a . ?a rdf:type ontology:nutrient }
[]
nutrient
Q23470037
SYSTEM
hypothetical protein    CT0705
Q23470037
(Q23470037,P688,c(Q181394))
action filter_type
action find
entity Q24085911
relation P688
type Q181394
Hypothetical protein CT0705 is encoded by that nucleic acid sequence
['Q23470037', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?a WHERE { resource:Q24085911 property:P688 ?a . ?a rdf:type ontology:Q181394 }
hypothetical protein    CT0705
Hypothetical protein CT0705 is encoded by that nucleic acid sequence
hypothetical protein    CT0705
action filter_type
action find
entity hypothetical protein    CT0705
relation encodes
type nutrient
['hypothetical protein    CT0705', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?a WHERE { resource:hypothetical_protein____CT0705 property:encodes ?a . ?a rdf:type ontology:nutrient }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q21687710
Q181394
USER
And what about branched-chain amino acid ABC transporter permease    TTHA1331?
(Q21687710,P688,c(Q181394))
action filter_type
action find
entity Q21687710
relation P688
type Q181394
['Q21687710', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?o WHERE { resource:Q21687710 property:P688 ?o . ?o rdf:type ontology:Q181394 }
branched-chain amino acid ABC transporter permease    TTHA1331
action filter_type
action find
entity branched-chain amino acid ABC transporter permease    TTHA1331
relation encodes
type nutrient
['branched-chain amino acid ABC transporter permease    TTHA1331', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?o WHERE { resource:branched-chain_amino_acid_ABC_transporter_permease____TTHA1331 property:encodes ?o . ?o rdf:type ontology:nutrient }
[]
nutrient
Q21766780
SYSTEM
branched-chain amino acid ABC transporter permease    TTHA1331
Q21766780
(Q21687710,P688,c(Q181394))
action filter_type
action find
entity Q21687710
relation P688
type Q181394
[ANSWER]
['Q21687710', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?o WHERE { resource:Q21687710 property:P688 ?o . ?o rdf:type ontology:Q181394 }
branched-chain amino acid ABC transporter permease    TTHA1331
branched-chain amino acid ABC transporter permease    TTHA1331
action filter_type
action find
entity branched-chain amino acid ABC transporter permease    TTHA1331
relation encodes
type nutrient
['branched-chain amino acid ABC transporter permease    TTHA1331', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?o WHERE { resource:branched-chain_amino_acid_ABC_transporter_permease____TTHA1331 property:encodes ?o . ?o rdf:type ontology:nutrient }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q21766780 Q21687710
P702
Q863908
USER
Is branched-chain amino acid ABC transporter permease    TTHA1331 the gene that encodes branched-chain amino acid ABC transporter permease    TTHA1331 ?
(Q21766780,P702,Q21687710)
action is_in
entity Q21687710
action find
entity Q21766780
relation P702
['Q21766780', 'P702', 'Q21687710']
ASK WHERE { resource:Q21766780 property:P702 resource:Q21687710 }
branched-chain amino acid ABC transporter permease    TTHA1331 branched-chain amino acid ABC transporter permease    TTHA1331
action is_in
entity branched-chain amino acid ABC transporter permease    TTHA1331
action find
entity branched-chain amino acid ABC transporter permease    TTHA1331
relation encoded by
['branched-chain amino acid ABC transporter permease    TTHA1331', 'encoded by', 'branched-chain amino acid ABC transporter permease    TTHA1331']
ASK WHERE { resource:branched-chain_amino_acid_ABC_transporter_permease____TTHA1331 property:encoded_by resource:branched-chain_amino_acid_ABC_transporter_permease____TTHA1331 }
[]
nucleic acid sequence
SYSTEM
YES
(Q21766780,P702,Q21687710)
action is_in
entity Q21687710
action find
entity Q21766780
relation P702
[ANSWER]
['Q21766780', 'P702', 'Q21687710']
ASK WHERE { resource:Q21766780 property:P702 resource:Q21687710 }
Yes
action is_in
entity branched-chain amino acid ABC transporter permease    TTHA1331
action find
entity branched-chain amino acid ABC transporter permease    TTHA1331
relation encoded by
['branched-chain amino acid ABC transporter permease    TTHA1331', 'encoded by', 'branched-chain amino acid ABC transporter permease    TTHA1331']
ASK WHERE { resource:branched-chain_amino_acid_ABC_transporter_permease____TTHA1331 property:encoded_by resource:branched-chain_amino_acid_ABC_transporter_permease____TTHA1331 }
[]