Simple Question (Direct)
Simple Question
Q23448300
P702
Q863908
USER
What is the gene that encodes 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase    CBU_1870 ?
(Q23448300,P702,c(Q863908))
action filter_type
action find
entity Q23448300
relation P702
type Q863908
['Q23448300', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?i WHERE { resource:Q23448300 property:P702 ?i . ?i rdf:type ontology:Q863908 }
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase    CBU_1870
action filter_type
action find
entity 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase    CBU_1870
relation encoded by
type nucleic acid sequence
['2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase    CBU_1870', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?i WHERE { resource:2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol_methylase____CBU_1870 property:encoded_by ?i . ?i rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23361270
SYSTEM
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase    CBU_1870
Q23361270
(Q23448300,P702,c(Q863908))
action filter_type
action find
entity Q23448300
relation P702
type Q863908
The gene that encodes 2-polyprenyl-3 -methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase CBU_1870 is named 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase CBU 1870
['Q23448300', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?i WHERE { resource:Q23448300 property:P702 ?i . ?i rdf:type ontology:Q863908 }
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase    CBU_1870
The gene that encodes 2-polyprenyl-3 -methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase CBU_1870 is named 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase CBU 1870
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase    CBU_1870
action filter_type
action find
entity 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase    CBU_1870
relation encoded by
type nucleic acid sequence
['2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase    CBU_1870', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?i WHERE { resource:2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol_methylase____CBU_1870 property:encoded_by ?i . ?i rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23448300
P681
Q15989253
USER
Which is the cell component of 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase    CBU_1870 ?
(Q23448300,P681,c(Q15989253))
action filter_type
action find
entity Q23448300
relation P681
type Q15989253
['Q23448300', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?g WHERE { resource:Q23448300 property:P681 ?g . ?g rdf:type ontology:Q15989253 }
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase    CBU_1870
action filter_type
action find
entity 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase    CBU_1870
relation cell component
type part
['2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase    CBU_1870', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?g WHERE { resource:2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol_methylase____CBU_1870 property:cell_component ?g . ?g rdf:type ontology:part }
[]
part
Q14349455
SYSTEM
membrane
Q14349455
(Q23448300,P681,c(Q15989253))
action filter_type
action find
entity Q23448300
relation P681
type Q15989253
The [ANSWER] is the cell component of 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase CBU_1870
['Q23448300', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?g WHERE { resource:Q23448300 property:P681 ?g . ?g rdf:type ontology:Q15989253 }
membrane
The membrane is the cell component of 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase CBU_1870
membrane
action filter_type
action find
entity 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase    CBU_1870
relation cell component
type part
['2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase    CBU_1870', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?g WHERE { resource:2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol_methylase____CBU_1870 property:cell_component ?g . ?g rdf:type ontology:part }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q21494717
Q15989253
USER
And also tell me about Lysyl oxidase homolog 4?
(Q21494717,P681,c(Q15989253))
action filter_type
action find
entity Q21494717
relation P681
type Q15989253
['Q21494717', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?r WHERE { resource:Q21494717 property:P681 ?r . ?r rdf:type ontology:Q15989253 }
Lysyl oxidase homolog 4
action filter_type
action find
entity Lysyl oxidase homolog 4
relation cell component
type part
['Lysyl oxidase homolog 4', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?r WHERE { resource:Lysyl_oxidase_homolog_4 property:cell_component ?r . ?r rdf:type ontology:part }
[]
part
Q14645596 Q14349455
SYSTEM
extracellular region, membrane
Q14645596 Q14349455
(Q21494717,P681,c(Q15989253))
action filter_type
action find
entity Q21494717
relation P681
type Q15989253
[ANSWERS]
['Q21494717', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?r WHERE { resource:Q21494717 property:P681 ?r . ?r rdf:type ontology:Q15989253 }
extracellular region membrane
extracellular region membrane
action filter_type
action find
entity Lysyl oxidase homolog 4
relation cell component
type part
['Lysyl oxidase homolog 4', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?r WHERE { resource:Lysyl_oxidase_homolog_4 property:cell_component ?r . ?r rdf:type ontology:part }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23361270
P703
Q631147
USER
Which taxon is 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase    CBU_1870 a part of ?
(Q23361270,P703,c(Q631147))
action filter_type
action find
entity Q23361270
relation P703
type Q631147
['Q23361270', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?o WHERE { resource:Q23361270 property:P703 ?o . ?o rdf:type ontology:Q631147 }
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase    CBU_1870
action filter_type
action find
entity 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase    CBU_1870
relation found in taxon
type infraspecific name
['2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase    CBU_1870', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?o WHERE { resource:2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol_methylase____CBU_1870 property:found_in_taxon ?o . ?o rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21064832
SYSTEM
Coxiella burnetii RSA 493
Q21064832
(Q23361270,P703,c(Q631147))
action filter_type
action find
entity Q23361270
relation P703
type Q631147
E [ANSWER] is 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase CBU_1870 a part of
['Q23361270', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?o WHERE { resource:Q23361270 property:P703 ?o . ?o rdf:type ontology:Q631147 }
Coxiella burnetii RSA 493
E Coxiella burnetii RSA 493 is 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase CBU_1870 a part of
Coxiella burnetii RSA 493
action filter_type
action find
entity 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase    CBU_1870
relation found in taxon
type infraspecific name
['2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase    CBU_1870', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?o WHERE { resource:2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol_methylase____CBU_1870 property:found_in_taxon ?o . ?o rdf:type ontology:infraspecific_name }
[]
Logical Reasoning (All)
Logical|Intersection|Single_Relation
Q23547131 Q21494717
P680
Q44424
USER
Which chemical bonds represent molecular function of Lysyl oxidase homolog 4 and nitrite reductase [NAD(P)H], large subunit    BMAA1086 ?
AND((Q21494717,P680,c(Q44424)), (Q23547131,P680,c(Q44424)))
action filter_type
action intersection
action find
entity Q21494717
relation P680
action find
entity Q23547131
relation P680
type Q44424
{'AND': [['Q21494717', 'P680', {'concept': 'Q44424'}], ['Q23547131', 'P680', {'concept': 'Q44424'}]]}
SELECT DISTINCT ?j WHERE { resource:Q21494717 property:P680 ?j . resource:Q23547131 property:P680 ?j . ?j rdf:type ontology:Q44424 }
nitrite reductase [NAD(P)H], large subunit    BMAA1086 Lysyl oxidase homolog 4
action filter_type
action intersection
action find
entity Lysyl oxidase homolog 4
relation molecular function
action find
entity nitrite reductase [NAD(P)H], large subunit    BMAA1086
relation molecular function
type chemical bond
{'AND': [['Lysyl oxidase homolog 4', 'molecular function', {'concept': 'chemical bond'}], ['nitrite reductase [NAD(P)H], large subunit    BMAA1086', 'molecular function', {'concept': 'chemical bond'}]]}
SELECT DISTINCT ?j WHERE { resource:Lysyl_oxidase_homolog_4 property:molecular_function ?j . resource:nitrite_reductase_[NAD(P)H],_large_subunit____BMAA1086 property:molecular_function ?j . ?j rdf:type ontology:chemical_bond }
[]
chemical bond
Q13667380
SYSTEM
metal ion binding
Q13667380
AND((Q21494717,P680,c(Q44424)), (Q23547131,P680,c(Q44424)))
action filter_type
action intersection
action find
entity Q21494717
relation P680
action find
entity Q23547131
relation P680
type Q44424
The [ANSWER] represent molecular function of Lysyl oxidase homolog 4 and nitrite reductase [NAD(P)H], large subunit BMAA1086
{'AND': [['Q21494717', 'P680', {'concept': 'Q44424'}], ['Q23547131', 'P680', {'concept': 'Q44424'}]]}
SELECT DISTINCT ?j WHERE { resource:Q21494717 property:P680 ?j . resource:Q23547131 property:P680 ?j . ?j rdf:type ontology:Q44424 }
metal ion binding
The metal ion binding represent molecular function of Lysyl oxidase homolog 4 and nitrite reductase [NAD(P)H], large subunit BMAA1086
metal ion binding
action filter_type
action intersection
action find
entity Lysyl oxidase homolog 4
relation molecular function
action find
entity nitrite reductase [NAD(P)H], large subunit    BMAA1086
relation molecular function
type chemical bond
{'AND': [['Lysyl oxidase homolog 4', 'molecular function', {'concept': 'chemical bond'}], ['nitrite reductase [NAD(P)H], large subunit    BMAA1086', 'molecular function', {'concept': 'chemical bond'}]]}
SELECT DISTINCT ?j WHERE { resource:Lysyl_oxidase_homolog_4 property:molecular_function ?j . resource:nitrite_reductase_[NAD(P)H],_large_subunit____BMAA1086 property:molecular_function ?j . ?j rdf:type ontology:chemical_bond }
[]
Logical Reasoning (All)
Logical|Intersection|Multiple_Relation
Q83310 Q21494717
P703 P688
Q863908
USER
Which nucleic acid sequences encode Lysyl oxidase homolog 4 and are found in the taxon Mus musculus ?
AND((c(Q863908),P688,Q21494717), (c(Q863908),P703,Q83310))
action filter_type
action intersection
action find_reverse
entity Q21494717
relation P688
action find_reverse
entity Q83310
relation P703
type Q863908
{'AND': [[{'concept': 'Q863908'}, 'P688', 'Q21494717'], [{'concept': 'Q863908'}, 'P703', 'Q83310']]}
SELECT DISTINCT ?n WHERE { ?n property:P703 resource:Q83310 . ?n property:P688 resource:Q21494717 . ?n rdf:type ontology:Q863908 }
Mus musculus Lysyl oxidase homolog 4
action filter_type
action intersection
action find_reverse
entity Lysyl oxidase homolog 4
relation encodes
action find_reverse
entity Mus musculus
relation found in taxon
type nucleic acid sequence
{'AND': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'Lysyl oxidase homolog 4'], [{'concept': 'nucleic acid sequence'}, 'found in taxon', 'Mus musculus']]}
SELECT DISTINCT ?n WHERE { ?n property:found_in_taxon resource:Mus_musculus . ?n property:encodes resource:Lysyl_oxidase_homolog_4 . ?n rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18262626
SYSTEM
Loxl4
Q18262626
AND((c(Q863908),P688,Q21494717), (c(Q863908),P703,Q83310))
action filter_type
action intersection
action find_reverse
entity Q21494717
relation P688
action find_reverse
entity Q83310
relation P703
type Q863908
[ANSWER] encode Lysyl oxidase homolog 4 and are found in the taxon Mus musculus
{'AND': [[{'concept': 'Q863908'}, 'P688', 'Q21494717'], [{'concept': 'Q863908'}, 'P703', 'Q83310']]}
SELECT DISTINCT ?n WHERE { ?n property:P703 resource:Q83310 . ?n property:P688 resource:Q21494717 . ?n rdf:type ontology:Q863908 }
Loxl4
Loxl4 encode Lysyl oxidase homolog 4 and are found in the taxon Mus musculus
Loxl4
action filter_type
action intersection
action find_reverse
entity Lysyl oxidase homolog 4
relation encodes
action find_reverse
entity Mus musculus
relation found in taxon
type nucleic acid sequence
{'AND': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'Lysyl oxidase homolog 4'], [{'concept': 'nucleic acid sequence'}, 'found in taxon', 'Mus musculus']]}
SELECT DISTINCT ?n WHERE { ?n property:found_in_taxon resource:Mus_musculus . ?n property:encodes resource:Lysyl_oxidase_homolog_4 . ?n rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q18262626 Q20772623
P684
Q863908
USER
Is LOC105376688 an orthologous gene for Loxl4 ?
(Q18262626,P684,Q20772623)
action is_in
entity Q20772623
action find
entity Q18262626
relation P684
['Q18262626', 'P684', 'Q20772623']
ASK WHERE { resource:Q18262626 property:P684 resource:Q20772623 }
Loxl4 LOC105376688
action is_in
entity LOC105376688
action find
entity Loxl4
relation ortholog
['Loxl4', 'ortholog', 'LOC105376688']
ASK WHERE { resource:Loxl4 property:ortholog resource:LOC105376688 }
[]
nucleic acid sequence
SYSTEM
NO
(Q18262626,P684,Q20772623)
action is_in
entity Q20772623
action find
entity Q18262626
relation P684
[ANSWER]
['Q18262626', 'P684', 'Q20772623']
ASK WHERE { resource:Q18262626 property:P684 resource:Q20772623 }
No
action is_in
entity LOC105376688
action find
entity Loxl4
relation ortholog
['Loxl4', 'ortholog', 'LOC105376688']
ASK WHERE { resource:Loxl4 property:ortholog resource:LOC105376688 }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type
Q18262626
P702
Q181394
USER
How many nutrients are the gene that are encoded by Loxl4 ?
(c(Q181394),P702,Q18262626)
action count
action filter_type
action find_reverse
entity Q18262626
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q18262626']
SELECT DISTINCT ( COUNT ( ?n ) AS ?l ) WHERE { ?n property:P702 resource:Q18262626 . ?n rdf:type ontology:Q181394 }
Loxl4
action count
action filter_type
action find_reverse
entity Loxl4
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'Loxl4']
SELECT DISTINCT ( COUNT ( ?n ) AS ?l ) WHERE { ?n property:encoded_by resource:Loxl4 . ?n rdf:type ontology:nutrient }
[]
nutrient
SYSTEM
1
Q21494717
(c(Q181394),P702,Q18262626)
action count
action filter_type
action find_reverse
entity Q18262626
relation P702
type Q181394
[ANSWER]
[{'concept': 'Q181394'}, 'P702', 'Q18262626']
SELECT DISTINCT ( COUNT ( ?n ) AS ?l ) WHERE { ?n property:P702 resource:Q18262626 . ?n rdf:type ontology:Q181394 }
Lysyl oxidase homolog 4
1
action count
action filter_type
action find_reverse
entity Loxl4
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'Loxl4']
SELECT DISTINCT ( COUNT ( ?n ) AS ?l ) WHERE { ?n property:encoded_by resource:Loxl4 . ?n rdf:type ontology:nutrient }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q23361270 Q23448300
P688
Q181394
USER
Is 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase    CBU_1870 an encoding of 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase    CBU_1870 ?
(Q23361270,P688,Q23448300)
action is_in
entity Q23448300
action find
entity Q23361270
relation P688
['Q23361270', 'P688', 'Q23448300']
ASK WHERE { resource:Q23361270 property:P688 resource:Q23448300 }
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase    CBU_1870 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase    CBU_1870
action is_in
entity 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase    CBU_1870
action find
entity 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase    CBU_1870
relation encodes
['2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase    CBU_1870', 'encodes', '2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase    CBU_1870']
ASK WHERE { resource:2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol_methylase____CBU_1870 property:encodes resource:2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol_methylase____CBU_1870 }
[]
nutrient
SYSTEM
YES
(Q23361270,P688,Q23448300)
action is_in
entity Q23448300
action find
entity Q23361270
relation P688
[ANSWER]
['Q23361270', 'P688', 'Q23448300']
ASK WHERE { resource:Q23361270 property:P688 resource:Q23448300 }
Yes
action is_in
entity 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase    CBU_1870
action find
entity 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase    CBU_1870
relation encodes
['2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase    CBU_1870', 'encodes', '2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase    CBU_1870']
ASK WHERE { resource:2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol_methylase____CBU_1870 property:encodes resource:2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol_methylase____CBU_1870 }
[]