Simple Question (Direct)
Simple Question
Q23596745
P703
Q16521
USER
Where is adenylyl-sulfate kinase    SO_3723 found ?
(Q23596745,P703,c(Q16521))
action filter_type
action find
entity Q23596745
relation P703
type Q16521
['Q23596745', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?k WHERE { resource:Q23596745 property:P703 ?k . ?k rdf:type ontology:Q16521 }
adenylyl-sulfate kinase    SO_3723
action filter_type
action find
entity adenylyl-sulfate kinase    SO_3723
relation found in taxon
type taxon
['adenylyl-sulfate kinase    SO_3723', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?k WHERE { resource:adenylyl-sulfate_kinase____SO_3723 property:found_in_taxon ?k . ?k rdf:type ontology:taxon }
[]
taxon
Q21398938
SYSTEM
Shewanella oneidensis MR-1
Q21398938
(Q23596745,P703,c(Q16521))
action filter_type
action find
entity Q23596745
relation P703
type Q16521
Adenylyl-sulfate kinase SO_3723 is found in [ANSWER]
['Q23596745', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?k WHERE { resource:Q23596745 property:P703 ?k . ?k rdf:type ontology:Q16521 }
Shewanella oneidensis MR-1
Adenylyl-sulfate kinase SO_3723 is found in Shewanella oneidensis MR-1
Shewanella oneidensis MR-1
action filter_type
action find
entity adenylyl-sulfate kinase    SO_3723
relation found in taxon
type taxon
['adenylyl-sulfate kinase    SO_3723', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?k WHERE { resource:adenylyl-sulfate_kinase____SO_3723 property:found_in_taxon ?k . ?k rdf:type ontology:taxon }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q21985564
Q16521
USER
And how about Janus kinase and microtubule-interacting protein 3?
(Q21985564,P703,c(Q16521))
action filter_type
action find
entity Q21985564
relation P703
type Q16521
['Q21985564', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?h WHERE { resource:Q21985564 property:P703 ?h . ?h rdf:type ontology:Q16521 }
Janus kinase and microtubule-interacting protein 3
action filter_type
action find
entity Janus kinase and microtubule-interacting protein 3
relation found in taxon
type taxon
['Janus kinase and microtubule-interacting protein 3', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?h WHERE { resource:Janus_kinase_and_microtubule-interacting_protein_3 property:found_in_taxon ?h . ?h rdf:type ontology:taxon }
[]
taxon
Q83310
SYSTEM
Mus musculus
Q83310
(Q21985564,P703,c(Q16521))
action filter_type
action find
entity Q21985564
relation P703
type Q16521
[ANSWER]
['Q21985564', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?h WHERE { resource:Q21985564 property:P703 ?h . ?h rdf:type ontology:Q16521 }
Mus musculus
Mus musculus
action filter_type
action find
entity Janus kinase and microtubule-interacting protein 3
relation found in taxon
type taxon
['Janus kinase and microtubule-interacting protein 3', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?h WHERE { resource:Janus_kinase_and_microtubule-interacting_protein_3 property:found_in_taxon ?h . ?h rdf:type ontology:taxon }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21985564
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(c(Q863908),P688,Q83310)
action filter_type
action find_reverse
entity Q21985564
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q83310']
SELECT DISTINCT ?j WHERE { ?j property:P688 resource:Q21985564 . ?j rdf:type ontology:Q863908 }
Janus kinase and microtubule-interacting protein 3
action filter_type
action find_reverse
entity Janus kinase and microtubule-interacting protein 3
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Mus musculus']
SELECT DISTINCT ?j WHERE { ?j property:encodes resource:Janus_kinase_and_microtubule-interacting_protein_3 . ?j rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18266423
SYSTEM
Jakmip3
Q18266423
(c(Q863908),P688,Q83310)
action filter_type
action find_reverse
entity Q21985564
relation P688
type Q863908
[ANSWER] encodes that nutrient
[{'concept': 'Q863908'}, 'P688', 'Q83310']
SELECT DISTINCT ?j WHERE { ?j property:P688 resource:Q21985564 . ?j rdf:type ontology:Q863908 }
Jakmip3
Jakmip3 encodes that nutrient
Jakmip3
action filter_type
action find_reverse
entity Janus kinase and microtubule-interacting protein 3
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Mus musculus']
SELECT DISTINCT ?j WHERE { ?j property:encodes resource:Janus_kinase_and_microtubule-interacting_protein_3 . ?j rdf:type ontology:nucleic_acid_sequence }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23024292 Q18266423
P702
Q181394
USER
Which nutrients are encoded by Jakmip3 or deoxycytidine triphosphate deaminase    LA_0072 ?
OR((c(Q181394),P702,Q18266423), (c(Q181394),P702,Q23024292))
action filter_type
action union
action find_reverse
entity Q18266423
relation P702
action find_reverse
entity Q23024292
relation P702
type Q181394
{'OR': [[{'concept': 'Q181394'}, 'P702', 'Q18266423'], [{'concept': 'Q181394'}, 'P702', 'Q23024292']]}
SELECT DISTINCT ?y WHERE { ?y rdf:type ontology:Q181394 . { { ?y property:P702 resource:Q18266423 } UNION { ?y property:P702 resource:Q23024292 } } }
deoxycytidine triphosphate deaminase    LA_0072 Jakmip3
action filter_type
action union
action find_reverse
entity Jakmip3
relation encoded by
action find_reverse
entity deoxycytidine triphosphate deaminase    LA_0072
relation encoded by
type nutrient
{'OR': [[{'concept': 'nutrient'}, 'encoded by', 'Jakmip3'], [{'concept': 'nutrient'}, 'encoded by', 'deoxycytidine triphosphate deaminase    LA_0072']]}
SELECT DISTINCT ?y WHERE { ?y rdf:type ontology:nutrient . { { ?y property:encoded_by resource:Jakmip3 } UNION { ?y property:encoded_by resource:deoxycytidine_triphosphate_deaminase____LA_0072 } } }
[]
nutrient
Q21985564 Q23063568
SYSTEM
Janus kinase and microtubule-interacting protein 3, deoxycytidine triphosphate deaminase    LA_0072
Q21985564 Q23063568
OR((c(Q181394),P702,Q18266423), (c(Q181394),P702,Q23024292))
action filter_type
action union
action find_reverse
entity Q18266423
relation P702
action find_reverse
entity Q23024292
relation P702
type Q181394
[ANSWERS]
{'OR': [[{'concept': 'Q181394'}, 'P702', 'Q18266423'], [{'concept': 'Q181394'}, 'P702', 'Q23024292']]}
SELECT DISTINCT ?y WHERE { ?y rdf:type ontology:Q181394 . { { ?y property:P702 resource:Q18266423 } UNION { ?y property:P702 resource:Q23024292 } } }
Janus kinase and microtubule-interacting protein 3 deoxycytidine triphosphate deaminase    LA_0072
Janus kinase and microtubule-interacting protein 3 and deoxycytidine triphosphate deaminase LA 0072 are encoded by Jakmip3 or deoxycytidine triphosphate deaminase LA_0072
Janus kinase and microtubule-interacting protein 3 deoxycytidine triphosphate deaminase    LA_0072
action filter_type
action union
action find_reverse
entity Jakmip3
relation encoded by
action find_reverse
entity deoxycytidine triphosphate deaminase    LA_0072
relation encoded by
type nutrient
{'OR': [[{'concept': 'nutrient'}, 'encoded by', 'Jakmip3'], [{'concept': 'nutrient'}, 'encoded by', 'deoxycytidine triphosphate deaminase    LA_0072']]}
SELECT DISTINCT ?y WHERE { ?y rdf:type ontology:nutrient . { { ?y property:encoded_by resource:Jakmip3 } UNION { ?y property:encoded_by resource:deoxycytidine_triphosphate_deaminase____LA_0072 } } }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q18266423
P684
Q863908
USER
What is an otrhologus gene for Jakmip3 ?
(Q18266423,P684,c(Q863908))
action filter_type
action find
entity Q18266423
relation P684
type Q863908
['Q18266423', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?y WHERE { resource:Q18266423 property:P684 ?y . ?y rdf:type ontology:Q863908 }
Jakmip3
action filter_type
action find
entity Jakmip3
relation ortholog
type nucleic acid sequence
['Jakmip3', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?y WHERE { resource:Jakmip3 property:ortholog ?y . ?y rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18054044
SYSTEM
JAKMIP3
Q18054044
(Q18266423,P684,c(Q863908))
action filter_type
action find
entity Q18266423
relation P684
type Q863908
An otrhologus gene for Jakmip3 is the [ANSWER]
['Q18266423', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?y WHERE { resource:Q18266423 property:P684 ?y . ?y rdf:type ontology:Q863908 }
JAKMIP3
An otrhologus gene for Jakmip3 is the JAKMIP3
JAKMIP3
action filter_type
action find
entity Jakmip3
relation ortholog
type nucleic acid sequence
['Jakmip3', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?y WHERE { resource:Jakmip3 property:ortholog ?y . ?y rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q18263784
Q863908
USER
And how about Dnase1l1?
(Q18263784,P684,c(Q863908))
action filter_type
action find
entity Q18263784
relation P684
type Q863908
['Q18263784', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?r WHERE { resource:Q18263784 property:P684 ?r . ?r rdf:type ontology:Q863908 }
Dnase1l1
action filter_type
action find
entity Dnase1l1
relation ortholog
type nucleic acid sequence
['Dnase1l1', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?r WHERE { resource:Dnase1l1 property:ortholog ?r . ?r rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q17914031
SYSTEM
DNASE1L1
Q17914031
(Q18263784,P684,c(Q863908))
action filter_type
action find
entity Q18263784
relation P684
type Q863908
[ANSWER]
['Q18263784', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?r WHERE { resource:Q18263784 property:P684 ?r . ?r rdf:type ontology:Q863908 }
DNASE1L1
DNASE1L1
action filter_type
action find
entity Dnase1l1
relation ortholog
type nucleic acid sequence
['Dnase1l1', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?r WHERE { resource:Dnase1l1 property:ortholog ?r . ?r rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, subject is indirect
Q17914031 Q23631267
P688
Q181394
USER
Is hypothetical protein    RB4519 encoded by that nucleic acid sequence ?
(Q17914031,P688,Q23631267)
action is_in
entity Q23631267
action find
entity Q17914031
relation P688
['Q17914031', 'P688', 'Q23631267']
ASK WHERE { resource:Q17914031 property:P688 resource:Q23631267 }
DNASE1L1 hypothetical protein    RB4519
action is_in
entity hypothetical protein    RB4519
action find
entity DNASE1L1
relation encodes
['DNASE1L1', 'encodes', 'hypothetical protein    RB4519']
ASK WHERE { resource:DNASE1L1 property:encodes resource:hypothetical_protein____RB4519 }
[]
nutrient
SYSTEM
NO
(Q17914031,P688,Q23631267)
action is_in
entity Q23631267
action find
entity Q17914031
relation P688
[ANSWER]
['Q17914031', 'P688', 'Q23631267']
ASK WHERE { resource:Q17914031 property:P688 resource:Q23631267 }
No
action is_in
entity hypothetical protein    RB4519
action find
entity DNASE1L1
relation encodes
['DNASE1L1', 'encodes', 'hypothetical protein    RB4519']
ASK WHERE { resource:DNASE1L1 property:encodes resource:hypothetical_protein____RB4519 }
[]