Simple Question (Direct)
Simple Question
Q21118083
P703
Q16521
USER
Where is OTU domain-containing protein 4 found ?
(Q21118083,P703,c(Q16521))
action filter_type
action find
entity Q21118083
relation P703
type Q16521
['Q21118083', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?m WHERE { resource:Q21118083 property:P703 ?m . ?m rdf:type ontology:Q16521 }
OTU domain-containing protein 4
action filter_type
action find
entity OTU domain-containing protein 4
relation found in taxon
type taxon
['OTU domain-containing protein 4', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?m WHERE { resource:OTU_domain-containing_protein_4 property:found_in_taxon ?m . ?m rdf:type ontology:taxon }
[]
taxon
Q15978631
SYSTEM
Homo sapiens
Q15978631
(Q21118083,P703,c(Q16521))
action filter_type
action find
entity Q21118083
relation P703
type Q16521
OTU domain-containing protein 4 is found in [ANSWER]
['Q21118083', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?m WHERE { resource:Q21118083 property:P703 ?m . ?m rdf:type ontology:Q16521 }
Homo sapiens
OTU domain-containing protein 4 is found in Homo sapiens
Homo sapiens
action filter_type
action find
entity OTU domain-containing protein 4
relation found in taxon
type taxon
['OTU domain-containing protein 4', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?m WHERE { resource:OTU_domain-containing_protein_4 property:found_in_taxon ?m . ?m rdf:type ontology:taxon }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21118083
P702
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(Q15978631,P702,c(Q863908))
action filter_type
action find
entity Q21118083
relation P702
type Q863908
['Q15978631', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?t WHERE { resource:Q21118083 property:P702 ?t . ?t rdf:type ontology:Q863908 }
OTU domain-containing protein 4
action filter_type
action find
entity OTU domain-containing protein 4
relation encoded by
type nucleic acid sequence
['Homo sapiens', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?t WHERE { resource:OTU_domain-containing_protein_4 property:encoded_by ?t . ?t rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18041214
SYSTEM
OTUD4
Q18041214
(Q15978631,P702,c(Q863908))
action filter_type
action find
entity Q21118083
relation P702
type Q863908
[ANSWER] encodes that nutrient
['Q15978631', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?t WHERE { resource:Q21118083 property:P702 ?t . ?t rdf:type ontology:Q863908 }
OTUD4
OTUD4 encodes that nutrient
OTUD4
action filter_type
action find
entity OTU domain-containing protein 4
relation encoded by
type nucleic acid sequence
['Homo sapiens', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?t WHERE { resource:OTU_domain-containing_protein_4 property:encoded_by ?t . ?t rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18041214
P688
Q181394
USER
What do that nucleic acid sequence encode ?
(Q18041214,P688,c(Q181394))
action filter_type
action find
entity Q18041214
relation P688
type Q181394
['Q18041214', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?n WHERE { resource:Q18041214 property:P688 ?n . ?n rdf:type ontology:Q181394 }
OTUD4
action filter_type
action find
entity OTUD4
relation encodes
type nutrient
['OTUD4', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?n WHERE { resource:OTUD4 property:encodes ?n . ?n rdf:type ontology:nutrient }
[]
nutrient
Q21118083 Q21140590
SYSTEM
OTU domain-containing protein 4, OTU domain-containing protein 4
Q21118083 Q21140590
(Q18041214,P688,c(Q181394))
action filter_type
action find
entity Q18041214
relation P688
type Q181394
That nucleic acid sequence encode codes [ANSWERS]
['Q18041214', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?n WHERE { resource:Q18041214 property:P688 ?n . ?n rdf:type ontology:Q181394 }
OTU domain-containing protein 4 OTU domain-containing protein 4
That nucleic acid sequence encode codes OTU domain-containing protein 4 and OTU domain-containing protein 4
OTU domain-containing protein 4 OTU domain-containing protein 4
action filter_type
action find
entity OTUD4
relation encodes
type nutrient
['OTUD4', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?n WHERE { resource:OTUD4 property:encodes ?n . ?n rdf:type ontology:nutrient }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18041214
P684
Q863908
USER
Which nucleic acid sequence is that one an orthlogous gene of ?
(c(Q863908),P684,Q21118083) (c(Q863908),P684,Q21140590)
action filter_type
action find
entity Q18041214
relation P684
type Q863908
[{'concept': 'Q863908'}, 'P684', 'Q21118083'] [{'concept': 'Q863908'}, 'P684', 'Q21140590']
SELECT DISTINCT ?n WHERE { resource:Q18041214 property:P684 ?n . ?n rdf:type ontology:Q863908 }
OTUD4
action filter_type
action find
entity OTUD4
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'OTU domain-containing protein 4'] [{'concept': 'nucleic acid sequence'}, 'ortholog', 'OTU domain-containing protein 4']
SELECT DISTINCT ?n WHERE { resource:OTUD4 property:ortholog ?n . ?n rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18266384
SYSTEM
Otud4
Q18266384
(c(Q863908),P684,Q21118083) (c(Q863908),P684,Q21140590)
action filter_type
action find
entity Q18041214
relation P684
type Q863908
[ANSWER] is that one an orthlogous gene of
[{'concept': 'Q863908'}, 'P684', 'Q21118083'] [{'concept': 'Q863908'}, 'P684', 'Q21140590']
SELECT DISTINCT ?n WHERE { resource:Q18041214 property:P684 ?n . ?n rdf:type ontology:Q863908 }
Otud4
Otud4 is that one an orthlogous gene of
Otud4
action filter_type
action find
entity OTUD4
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'OTU domain-containing protein 4'] [{'concept': 'nucleic acid sequence'}, 'ortholog', 'OTU domain-containing protein 4']
SELECT DISTINCT ?n WHERE { resource:OTUD4 property:ortholog ?n . ?n rdf:type ontology:nucleic_acid_sequence }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation|Incomplete
Q18262573 Q18041214
P684
Q863908
USER
Or Mettl16?
OR((c(Q863908),P684,Q18041214), (c(Q863908),P684,Q18262573))
action filter_type
action union
action find_reverse
entity Q18041214
relation P684
action find_reverse
entity Q18262573
relation P684
type Q863908
{'OR': [[{'concept': 'Q863908'}, 'P684', 'Q18041214'], [{'concept': 'Q863908'}, 'P684', 'Q18262573']]}
SELECT DISTINCT ?h WHERE { { { ?h property:P684 resource:Q18041214 } UNION { ?h property:P684 resource:Q18262573 } } . ?h rdf:type ontology:Q863908 }
Mettl16 OTUD4
action filter_type
action union
action find_reverse
entity OTUD4
relation ortholog
action find_reverse
entity Mettl16
relation ortholog
type nucleic acid sequence
{'OR': [[{'concept': 'nucleic acid sequence'}, 'ortholog', 'OTUD4'], [{'concept': 'nucleic acid sequence'}, 'ortholog', 'Mettl16']]}
SELECT DISTINCT ?h WHERE { { { ?h property:ortholog resource:OTUD4 } UNION { ?h property:ortholog resource:Mettl16 } } . ?h rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18266384 Q18045977
SYSTEM
Otud4, METTL16
Q18266384 Q18045977
OR((c(Q863908),P684,Q18041214), (c(Q863908),P684,Q18262573))
action filter_type
action union
action find_reverse
entity Q18041214
relation P684
action find_reverse
entity Q18262573
relation P684
type Q863908
[ANSWERS]
{'OR': [[{'concept': 'Q863908'}, 'P684', 'Q18041214'], [{'concept': 'Q863908'}, 'P684', 'Q18262573']]}
SELECT DISTINCT ?h WHERE { { { ?h property:P684 resource:Q18041214 } UNION { ?h property:P684 resource:Q18262573 } } . ?h rdf:type ontology:Q863908 }
Otud4 METTL16
Otud4 METTL16
action filter_type
action union
action find_reverse
entity OTUD4
relation ortholog
action find_reverse
entity Mettl16
relation ortholog
type nucleic acid sequence
{'OR': [[{'concept': 'nucleic acid sequence'}, 'ortholog', 'OTUD4'], [{'concept': 'nucleic acid sequence'}, 'ortholog', 'Mettl16']]}
SELECT DISTINCT ?h WHERE { { { ?h property:ortholog resource:OTUD4 } UNION { ?h property:ortholog resource:Mettl16 } } . ?h rdf:type ontology:nucleic_acid_sequence }
[]
Logical Reasoning (All)
Logical|Intersection|Multiple_Relation
Q14840131 Q18045977
P702 P680
Q181394
USER
Which nutrients do METTL16 encode and have transferase activity as their molecular function ?
AND((c(Q181394),P702,Q18045977), (c(Q181394),P680,Q14840131))
action filter_type
action intersection
action find_reverse
entity Q18045977
relation P702
action find_reverse
entity Q14840131
relation P680
type Q181394
{'AND': [[{'concept': 'Q181394'}, 'P702', 'Q18045977'], [{'concept': 'Q181394'}, 'P680', 'Q14840131']]}
SELECT DISTINCT ?j WHERE { ?j property:P702 resource:Q18045977 . ?j property:P680 resource:Q14840131 . ?j rdf:type ontology:Q181394 }
transferase activity METTL16
action filter_type
action intersection
action find_reverse
entity METTL16
relation encoded by
action find_reverse
entity transferase activity
relation molecular function
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'encoded by', 'METTL16'], [{'concept': 'nutrient'}, 'molecular function', 'transferase activity']]}
SELECT DISTINCT ?j WHERE { ?j property:encoded_by resource:METTL16 . ?j property:molecular_function resource:transferase_activity . ?j rdf:type ontology:nutrient }
[]
nutrient
Q21119433
SYSTEM
Methyltransferase-like protein 16
Q21119433
AND((c(Q181394),P702,Q18045977), (c(Q181394),P680,Q14840131))
action filter_type
action intersection
action find_reverse
entity Q18045977
relation P702
action find_reverse
entity Q14840131
relation P680
type Q181394
METTL16 encode codes [ANSWER]
{'AND': [[{'concept': 'Q181394'}, 'P702', 'Q18045977'], [{'concept': 'Q181394'}, 'P680', 'Q14840131']]}
SELECT DISTINCT ?j WHERE { ?j property:P702 resource:Q18045977 . ?j property:P680 resource:Q14840131 . ?j rdf:type ontology:Q181394 }
Methyltransferase-like protein 16
METTL16 encode codes Methyltransferase-like protein 16
Methyltransferase-like protein 16
action filter_type
action intersection
action find_reverse
entity METTL16
relation encoded by
action find_reverse
entity transferase activity
relation molecular function
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'encoded by', 'METTL16'], [{'concept': 'nutrient'}, 'molecular function', 'transferase activity']]}
SELECT DISTINCT ?j WHERE { ?j property:encoded_by resource:METTL16 . ?j property:molecular_function resource:transferase_activity . ?j rdf:type ontology:nutrient }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21119433
P682
Q2996394
USER
Which biological process is that nutrient involved in ?
(Q21119433,P682,c(Q2996394))
action filter_type
action find
entity Q21119433
relation P682
type Q2996394
['Q21119433', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?z WHERE { resource:Q21119433 property:P682 ?z . ?z rdf:type ontology:Q2996394 }
Methyltransferase-like protein 16
action filter_type
action find
entity Methyltransferase-like protein 16
relation biological process
type biological process
['Methyltransferase-like protein 16', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?z WHERE { resource:Methyltransferase-like_protein_16 property:biological_process ?z . ?z rdf:type ontology:biological_process }
[]
biological process
Q518328
SYSTEM
methylation
Q518328
(Q21119433,P682,c(Q2996394))
action filter_type
action find
entity Q21119433
relation P682
type Q2996394
That nutrient is involved in [ANSWER]
['Q21119433', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?z WHERE { resource:Q21119433 property:P682 ?z . ?z rdf:type ontology:Q2996394 }
methylation
That nutrient is involved in methylation
methylation
action filter_type
action find
entity Methyltransferase-like protein 16
relation biological process
type biological process
['Methyltransferase-like protein 16', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?z WHERE { resource:Methyltransferase-like_protein_16 property:biological_process ?z . ?z rdf:type ontology:biological_process }
[]