Simple Question (Direct)
Simple Question
Q23604991
P703
Q16521
USER
Where is beta-ketoacyl synthase    Smed_0197 found ?
(Q23604991,P703,c(Q16521))
action filter_type
action find
entity Q23604991
relation P703
type Q16521
['Q23604991', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?j WHERE { resource:Q23604991 property:P703 ?j . ?j rdf:type ontology:Q16521 }
beta-ketoacyl synthase    Smed_0197
action filter_type
action find
entity beta-ketoacyl synthase    Smed_0197
relation found in taxon
type taxon
['beta-ketoacyl synthase    Smed_0197', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?j WHERE { resource:beta-ketoacyl_synthase____Smed_0197 property:found_in_taxon ?j . ?j rdf:type ontology:taxon }
[]
taxon
Q21398749
SYSTEM
Sinorhizobium medicae WSM419
Q21398749
(Q23604991,P703,c(Q16521))
action filter_type
action find
entity Q23604991
relation P703
type Q16521
Beta- ketoacyl synthase Smed_0197 is found in [ANSWER]
['Q23604991', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?j WHERE { resource:Q23604991 property:P703 ?j . ?j rdf:type ontology:Q16521 }
Sinorhizobium medicae WSM419
Beta- ketoacyl synthase Smed_0197 is found in Sinorhizobium medicae WSM419
Sinorhizobium medicae WSM419
action filter_type
action find
entity beta-ketoacyl synthase    Smed_0197
relation found in taxon
type taxon
['beta-ketoacyl synthase    Smed_0197', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?j WHERE { resource:beta-ketoacyl_synthase____Smed_0197 property:found_in_taxon ?j . ?j rdf:type ontology:taxon }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23604991
P680
Q44424
USER
What represents the molecular function of beta-ketoacyl synthase    Smed_0197 ?
(Q23604991,P680,c(Q44424))
action filter_type
action find
entity Q23604991
relation P680
type Q44424
['Q23604991', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?b WHERE { resource:Q23604991 property:P680 ?b . ?b rdf:type ontology:Q44424 }
beta-ketoacyl synthase    Smed_0197
action filter_type
action find
entity beta-ketoacyl synthase    Smed_0197
relation molecular function
type chemical bond
['beta-ketoacyl synthase    Smed_0197', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?b WHERE { resource:beta-ketoacyl_synthase____Smed_0197 property:molecular_function ?b . ?b rdf:type ontology:chemical_bond }
[]
chemical bond
Q14633865
SYSTEM
zinc ion binding
Q14633865
(Q23604991,P680,c(Q44424))
action filter_type
action find
entity Q23604991
relation P680
type Q44424
The [ANSWER] represents the molecular function of beta-ketoacyl synthase Smed_0197
['Q23604991', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?b WHERE { resource:Q23604991 property:P680 ?b . ?b rdf:type ontology:Q44424 }
zinc ion binding
The zinc ion binding represents the molecular function of beta-ketoacyl synthase Smed_0197
zinc ion binding
action filter_type
action find
entity beta-ketoacyl synthase    Smed_0197
relation molecular function
type chemical bond
['beta-ketoacyl synthase    Smed_0197', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?b WHERE { resource:beta-ketoacyl_synthase____Smed_0197 property:molecular_function ?b . ?b rdf:type ontology:chemical_bond }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q21117896
Q44424
USER
And how about Zinc finger SWIM domain-containing protein 8?
(Q21117896,P680,c(Q44424))
action filter_type
action find
entity Q21117896
relation P680
type Q44424
['Q21117896', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?s WHERE { resource:Q21117896 property:P680 ?s . ?s rdf:type ontology:Q44424 }
Zinc finger SWIM domain-containing protein 8
action filter_type
action find
entity Zinc finger SWIM domain-containing protein 8
relation molecular function
type chemical bond
['Zinc finger SWIM domain-containing protein 8', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?s WHERE { resource:Zinc_finger_SWIM_domain-containing_protein_8 property:molecular_function ?s . ?s rdf:type ontology:chemical_bond }
[]
chemical bond
Q14633865 Q13667380
SYSTEM
zinc ion binding, metal ion binding
Q14633865 Q13667380
(Q21117896,P680,c(Q44424))
action filter_type
action find
entity Q21117896
relation P680
type Q44424
[ANSWERS]
['Q21117896', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?s WHERE { resource:Q21117896 property:P680 ?s . ?s rdf:type ontology:Q44424 }
zinc ion binding metal ion binding
zinc ion binding metal ion binding
action filter_type
action find
entity Zinc finger SWIM domain-containing protein 8
relation molecular function
type chemical bond
['Zinc finger SWIM domain-containing protein 8', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?s WHERE { resource:Zinc_finger_SWIM_domain-containing_protein_8 property:molecular_function ?s . ?s rdf:type ontology:chemical_bond }
[]
Verification (Boolean) (All)
Verification|one entity, multiple entities (as object) referred indirectly
Q24094302
P680
Q181394
USER
Do heat shock protein HtpX    Psyr_3616 have those chemical bonds as their molecular function ?
(Q24094302,P680,Q14633865) (Q24094302,P680,Q13667380)
action is_in
entity prev_answer
action find
entity Q24094302
relation P680
['Q24094302', 'P680', 'Q14633865'] ['Q24094302', 'P680', 'Q13667380']
ASK WHERE { resource:Q24094302 property:P680 ?q . VALUES ( ?q ) { ( resource:Q14633865 ) ( resource:Q13667380 ) } }
heat shock protein HtpX    Psyr_3616
action is_in
entity prev_answer
action find
entity heat shock protein HtpX    Psyr_3616
relation molecular function
['heat shock protein HtpX    Psyr_3616', 'molecular function', 'zinc ion binding'] ['heat shock protein HtpX    Psyr_3616', 'molecular function', 'metal ion binding']
ASK WHERE { resource:heat_shock_protein_HtpX____Psyr_3616 property:molecular_function ?q . VALUES ( ?q ) { ( resource:zinc_ion_binding ) ( resource:metal_ion_binding ) } }
[]
nutrient
SYSTEM
YES
(Q24094302,P680,Q14633865) (Q24094302,P680,Q13667380)
action is_in
entity prev_answer
action find
entity Q24094302
relation P680
[ANSWER]
['Q24094302', 'P680', 'Q14633865'] ['Q24094302', 'P680', 'Q13667380']
ASK WHERE { resource:Q24094302 property:P680 ?q . VALUES ( ?q ) { ( resource:Q14633865 ) ( resource:Q13667380 ) } }
Yes
action is_in
entity prev_answer
action find
entity heat shock protein HtpX    Psyr_3616
relation molecular function
['heat shock protein HtpX    Psyr_3616', 'molecular function', 'zinc ion binding'] ['heat shock protein HtpX    Psyr_3616', 'molecular function', 'metal ion binding']
ASK WHERE { resource:heat_shock_protein_HtpX____Psyr_3616 property:molecular_function ?q . VALUES ( ?q ) { ( resource:zinc_ion_binding ) ( resource:metal_ion_binding ) } }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q24094302
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
action filter_type
action find_reverse
entity Q24094302
relation P688
type Q863908
SELECT DISTINCT ?f WHERE { ?f property:P688 resource:Q24094302 . ?f rdf:type ontology:Q863908 }
heat shock protein HtpX    Psyr_3616
action filter_type
action find_reverse
entity heat shock protein HtpX    Psyr_3616
relation encodes
type nucleic acid sequence
SELECT DISTINCT ?f WHERE { ?f property:encodes resource:heat_shock_protein_HtpX____Psyr_3616 . ?f rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23148621
SYSTEM
heat shock protein HtpX    Psyr_3616
Q23148621
action filter_type
action find_reverse
entity Q24094302
relation P688
type Q863908
The heat shock protein HtpX Psyr 3616 encodes that nutrient
SELECT DISTINCT ?f WHERE { ?f property:P688 resource:Q24094302 . ?f rdf:type ontology:Q863908 }
heat shock protein HtpX    Psyr_3616
The heat shock protein HtpX Psyr 3616 encodes that nutrient
heat shock protein HtpX    Psyr_3616
action filter_type
action find_reverse
entity heat shock protein HtpX    Psyr_3616
relation encodes
type nucleic acid sequence
SELECT DISTINCT ?f WHERE { ?f property:encodes resource:heat_shock_protein_HtpX____Psyr_3616 . ?f rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, subject is indirect
Q23148621 Q21079490
P703
Q631147
USER
Is that nucleic acid sequence found in Pseudomonas syringae pv. syringae B728a ?
(Q23148621,P703,Q21079490)
action is_in
entity Q21079490
action find
entity Q23148621
relation P703
['Q23148621', 'P703', 'Q21079490']
ASK WHERE { resource:Q23148621 property:P703 resource:Q21079490 }
heat shock protein HtpX    Psyr_3616 Pseudomonas syringae pv. syringae B728a
action is_in
entity Pseudomonas syringae pv. syringae B728a
action find
entity heat shock protein HtpX    Psyr_3616
relation found in taxon
['heat shock protein HtpX    Psyr_3616', 'found in taxon', 'Pseudomonas syringae pv. syringae B728a']
ASK WHERE { resource:heat_shock_protein_HtpX____Psyr_3616 property:found_in_taxon resource:Pseudomonas_syringae_pv._syringae_B728a }
[]
infraspecific name
SYSTEM
YES
(Q23148621,P703,Q21079490)
action is_in
entity Q21079490
action find
entity Q23148621
relation P703
[ANSWER]
['Q23148621', 'P703', 'Q21079490']
ASK WHERE { resource:Q23148621 property:P703 resource:Q21079490 }
Yes
action is_in
entity Pseudomonas syringae pv. syringae B728a
action find
entity heat shock protein HtpX    Psyr_3616
relation found in taxon
['heat shock protein HtpX    Psyr_3616', 'found in taxon', 'Pseudomonas syringae pv. syringae B728a']
ASK WHERE { resource:heat_shock_protein_HtpX____Psyr_3616 property:found_in_taxon resource:Pseudomonas_syringae_pv._syringae_B728a }
[]