Simple Question (Direct)
Simple Question
Q21980360
P703
Q16521
USER
Which taxon is Calpain-12 found in ?
(Q21980360,P703,c(Q16521))
action filter_type
action find
entity Q21980360
relation P703
type Q16521
['Q21980360', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?x WHERE { resource:Q21980360 property:P703 ?x . ?x rdf:type ontology:Q16521 }
Calpain-12
action filter_type
action find
entity Calpain-12
relation found in taxon
type taxon
['Calpain-12', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?x WHERE { resource:Calpain-12 property:found_in_taxon ?x . ?x rdf:type ontology:taxon }
[]
taxon
Q83310
SYSTEM
Mus musculus
Q83310
(Q21980360,P703,c(Q16521))
action filter_type
action find
entity Q21980360
relation P703
type Q16521
Calpain-12 is found in [ANSWER]
['Q21980360', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?x WHERE { resource:Q21980360 property:P703 ?x . ?x rdf:type ontology:Q16521 }
Mus musculus
Calpain-12 is found in Mus musculus
Mus musculus
action filter_type
action find
entity Calpain-12
relation found in taxon
type taxon
['Calpain-12', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?x WHERE { resource:Calpain-12 property:found_in_taxon ?x . ?x rdf:type ontology:taxon }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21980360
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(c(Q863908),P688,Q83310)
action filter_type
action find_reverse
entity Q21980360
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q83310']
SELECT DISTINCT ?i WHERE { ?i rdf:type ontology:Q863908 . ?i property:P688 resource:Q21980360 }
Calpain-12
action filter_type
action find_reverse
entity Calpain-12
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Mus musculus']
SELECT DISTINCT ?i WHERE { ?i rdf:type ontology:nucleic_acid_sequence . ?i property:encodes resource:Calpain-12 }
[]
nucleic acid sequence
Q18259021
SYSTEM
Capn12
Q18259021
(c(Q863908),P688,Q83310)
action filter_type
action find_reverse
entity Q21980360
relation P688
type Q863908
[ANSWER] encodes that nutrient
[{'concept': 'Q863908'}, 'P688', 'Q83310']
SELECT DISTINCT ?i WHERE { ?i rdf:type ontology:Q863908 . ?i property:P688 resource:Q21980360 }
Capn12
Capn12 encodes that nutrient
Capn12
action filter_type
action find_reverse
entity Calpain-12
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Mus musculus']
SELECT DISTINCT ?i WHERE { ?i rdf:type ontology:nucleic_acid_sequence . ?i property:encodes resource:Calpain-12 }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18259021
P684
Q863908
USER
What is an otrhologus gene for that one ?
(Q18259021,P684,c(Q863908))
action filter_type
action find
entity Q18259021
relation P684
type Q863908
['Q18259021', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?v WHERE { resource:Q18259021 property:P684 ?v . ?v rdf:type ontology:Q863908 }
Capn12
action filter_type
action find
entity Capn12
relation ortholog
type nucleic acid sequence
['Capn12', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?v WHERE { resource:Capn12 property:ortholog ?v . ?v rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18051802
SYSTEM
CAPN12
Q18051802
(Q18259021,P684,c(Q863908))
action filter_type
action find
entity Q18259021
relation P684
type Q863908
An otrhologus gene for that one is the [ANSWER]
['Q18259021', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?v WHERE { resource:Q18259021 property:P684 ?v . ?v rdf:type ontology:Q863908 }
CAPN12
An otrhologus gene for that one is the CAPN12
CAPN12
action filter_type
action find
entity Capn12
relation ortholog
type nucleic acid sequence
['Capn12', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?v WHERE { resource:Capn12 property:ortholog ?v . ?v rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18051802
P702
Q181394
USER
Which nutrients are encoded by that nucleic acid sequence ?
(c(Q181394),P702,Q18051802)
action filter_type
action find_reverse
entity Q18051802
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q18051802']
SELECT DISTINCT ?p WHERE { ?p rdf:type ontology:Q181394 . ?p property:P702 resource:Q18051802 }
CAPN12
action filter_type
action find_reverse
entity CAPN12
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'CAPN12']
SELECT DISTINCT ?p WHERE { ?p rdf:type ontology:nutrient . ?p property:encoded_by resource:CAPN12 }
[]
nutrient
Q21115590 Q21151993
SYSTEM
Calpain-12, Calpain-12
Q21115590 Q21151993
(c(Q181394),P702,Q18051802)
action filter_type
action find_reverse
entity Q18051802
relation P702
type Q181394
[ANSWERS] are encoded by that nucleic acid sequence
[{'concept': 'Q181394'}, 'P702', 'Q18051802']
SELECT DISTINCT ?p WHERE { ?p rdf:type ontology:Q181394 . ?p property:P702 resource:Q18051802 }
Calpain-12 Calpain-12
Calpain-12 and Calpain-12 are encoded by that nucleic acid sequence
Calpain-12 Calpain-12
action filter_type
action find_reverse
entity CAPN12
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'CAPN12']
SELECT DISTINCT ?p WHERE { ?p rdf:type ontology:nutrient . ?p property:encoded_by resource:CAPN12 }
[]
Verification (Boolean) (All)
Verification|one entity, multiple entities (as object) referred indirectly
Q18051802
P688
Q863908
USER
Does CAPN12 encode those nutrients ?
(Q18051802,P688,Q21115590) (Q18051802,P688,Q21151993)
action is_in
entity prev_answer
action find
entity Q18051802
relation P688
['Q18051802', 'P688', 'Q21115590'] ['Q18051802', 'P688', 'Q21151993']
ASK WHERE { VALUES ( ?c ) { ( resource:Q21115590 ) ( resource:Q21151993 ) } . resource:Q18051802 property:P688 ?c }
CAPN12
action is_in
entity prev_answer
action find
entity CAPN12
relation encodes
['CAPN12', 'encodes', 'Calpain-12'] ['CAPN12', 'encodes', 'Calpain-12']
ASK WHERE { VALUES ( ?c ) { ( resource:Calpain-12 ) ( resource:Calpain-12 ) } . resource:CAPN12 property:encodes ?c }
[]
nucleic acid sequence
SYSTEM
YES
(Q18051802,P688,Q21115590) (Q18051802,P688,Q21151993)
action is_in
entity prev_answer
action find
entity Q18051802
relation P688
[ANSWER]
['Q18051802', 'P688', 'Q21115590'] ['Q18051802', 'P688', 'Q21151993']
ASK WHERE { VALUES ( ?c ) { ( resource:Q21115590 ) ( resource:Q21151993 ) } . resource:Q18051802 property:P688 ?c }
Yes
action is_in
entity prev_answer
action find
entity CAPN12
relation encodes
['CAPN12', 'encodes', 'Calpain-12'] ['CAPN12', 'encodes', 'Calpain-12']
ASK WHERE { VALUES ( ?c ) { ( resource:Calpain-12 ) ( resource:Calpain-12 ) } . resource:CAPN12 property:encodes ?c }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q21763104 Q21151993
P688
Q863908
USER
Which nucleic acid sequences encodes Calpain-12 or 5-formyltetrahydrofolate cyclo-ligase    PA5228 ?
OR((c(Q863908),P688,Q21151993), (c(Q863908),P688,Q21763104))
action filter_type
action union
action find_reverse
entity Q21151993
relation P688
action find_reverse
entity Q21763104
relation P688
type Q863908
{'OR': [[{'concept': 'Q863908'}, 'P688', 'Q21151993'], [{'concept': 'Q863908'}, 'P688', 'Q21763104']]}
SELECT DISTINCT ?z WHERE { { ?z property:P688 ?j . VALUES ( ?j ) { ( resource:Q21763104 ) ( resource:Q21151993 ) } } . ?z rdf:type ontology:Q863908 }
5-formyltetrahydrofolate cyclo-ligase    PA5228 Calpain-12
action filter_type
action union
action find_reverse
entity Calpain-12
relation encodes
action find_reverse
entity 5-formyltetrahydrofolate cyclo-ligase    PA5228
relation encodes
type nucleic acid sequence
{'OR': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'Calpain-12'], [{'concept': 'nucleic acid sequence'}, 'encodes', '5-formyltetrahydrofolate cyclo-ligase    PA5228']]}
SELECT DISTINCT ?z WHERE { { ?z property:encodes ?j . VALUES ( ?j ) { ( resource:5-formyltetrahydrofolate_cyclo-ligase____PA5228 ) ( resource:Calpain-12 ) } } . ?z rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q21692624 Q18051802
SYSTEM
5-formyltetrahydrofolate cyclo-ligase    PA5228, CAPN12
Q21692624 Q18051802
OR((c(Q863908),P688,Q21151993), (c(Q863908),P688,Q21763104))
action filter_type
action union
action find_reverse
entity Q21151993
relation P688
action find_reverse
entity Q21763104
relation P688
type Q863908
[ANSWERS]
{'OR': [[{'concept': 'Q863908'}, 'P688', 'Q21151993'], [{'concept': 'Q863908'}, 'P688', 'Q21763104']]}
SELECT DISTINCT ?z WHERE { { ?z property:P688 ?j . VALUES ( ?j ) { ( resource:Q21763104 ) ( resource:Q21151993 ) } } . ?z rdf:type ontology:Q863908 }
5-formyltetrahydrofolate cyclo-ligase    PA5228 CAPN12
5-formyltetrahydrofolate cyclo-ligase PA5228 and CAPN12 encode Calpain-12 or 5-formyltetrahydrofolate cyclo-ligase PA5228
5-formyltetrahydrofolate cyclo-ligase    PA5228 CAPN12
action filter_type
action union
action find_reverse
entity Calpain-12
relation encodes
action find_reverse
entity 5-formyltetrahydrofolate cyclo-ligase    PA5228
relation encodes
type nucleic acid sequence
{'OR': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'Calpain-12'], [{'concept': 'nucleic acid sequence'}, 'encodes', '5-formyltetrahydrofolate cyclo-ligase    PA5228']]}
SELECT DISTINCT ?z WHERE { { ?z property:encodes ?j . VALUES ( ?j ) { ( resource:5-formyltetrahydrofolate_cyclo-ligase____PA5228 ) ( resource:Calpain-12 ) } } . ?z rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21763104
P680
Q44424
USER
Which the chemical bond that represents the molecular function of 5-formyltetrahydrofolate cyclo-ligase    PA5228?
(Q21692624,P680,c(Q44424)) (Q18051802,P680,c(Q44424))
action filter_type
action find
entity Q21763104
relation P680
type Q44424
['Q21692624', 'P680', {'concept': 'Q44424'}] ['Q18051802', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?y WHERE { resource:Q21763104 property:P680 ?y . ?y rdf:type ontology:Q44424 }
5-formyltetrahydrofolate cyclo-ligase    PA5228
action filter_type
action find
entity 5-formyltetrahydrofolate cyclo-ligase    PA5228
relation molecular function
type chemical bond
['5-formyltetrahydrofolate cyclo-ligase    PA5228', 'molecular function', {'concept': 'chemical bond'}] ['CAPN12', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?y WHERE { resource:5-formyltetrahydrofolate_cyclo-ligase____PA5228 property:molecular_function ?y . ?y rdf:type ontology:chemical_bond }
[]
chemical bond
Q13667380
SYSTEM
metal ion binding
Q13667380
(Q21692624,P680,c(Q44424)) (Q18051802,P680,c(Q44424))
action filter_type
action find
entity Q21763104
relation P680
type Q44424
Represents of [ANSWER]
['Q21692624', 'P680', {'concept': 'Q44424'}] ['Q18051802', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?y WHERE { resource:Q21763104 property:P680 ?y . ?y rdf:type ontology:Q44424 }
metal ion binding
Represents of metal ion binding
metal ion binding
action filter_type
action find
entity 5-formyltetrahydrofolate cyclo-ligase    PA5228
relation molecular function
type chemical bond
['5-formyltetrahydrofolate cyclo-ligase    PA5228', 'molecular function', {'concept': 'chemical bond'}] ['CAPN12', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?y WHERE { resource:5-formyltetrahydrofolate_cyclo-ligase____PA5228 property:molecular_function ?y . ?y rdf:type ontology:chemical_bond }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Mult. entity type
Q21763104 Q8054
P688
Q863908
USER
How many nucleic acid sequences encodes 5-formyltetrahydrofolate cyclo-ligase    PA5228 or protein ?
(c(Q863908),P688,Q21763104) (c(Q863908),P688,Q8054)
action count
action union
action filter_type
action find_reverse
entity Q21763104
relation P688
type Q863908
action filter_type
action find_reverse
entity Q8054
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q21763104'] [{'concept': 'Q863908'}, 'P688', 'Q8054']
SELECT DISTINCT ( COUNT ( ?u ) AS ?x ) WHERE { VALUES ( ?q ) { ( resource:Q21763104 ) ( resource:Q8054 ) } . ?u property:P688 ?q }
5-formyltetrahydrofolate cyclo-ligase    PA5228 protein
action count
action union
action filter_type
action find_reverse
entity 5-formyltetrahydrofolate cyclo-ligase    PA5228
relation encodes
type nucleic acid sequence
action filter_type
action find_reverse
entity protein
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', '5-formyltetrahydrofolate cyclo-ligase    PA5228'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'protein']
SELECT DISTINCT ( COUNT ( ?u ) AS ?x ) WHERE { VALUES ( ?q ) { ( resource:5-formyltetrahydrofolate_cyclo-ligase____PA5228 ) ( resource:protein ) } . ?u property:encodes ?q }
[]
nucleic acid sequence
SYSTEM
2
Q21692624 Q20747295
(c(Q863908),P688,Q21763104) (c(Q863908),P688,Q8054)
action count
action union
action filter_type
action find_reverse
entity Q21763104
relation P688
type Q863908
action filter_type
action find_reverse
entity Q8054
relation P688
type Q863908
[ANSWER]
[{'concept': 'Q863908'}, 'P688', 'Q21763104'] [{'concept': 'Q863908'}, 'P688', 'Q8054']
SELECT DISTINCT ( COUNT ( ?u ) AS ?x ) WHERE { VALUES ( ?q ) { ( resource:Q21763104 ) ( resource:Q8054 ) } . ?u property:P688 ?q }
5-formyltetrahydrofolate cyclo-ligase    PA5228 protein-coding gene
2
action count
action union
action filter_type
action find_reverse
entity 5-formyltetrahydrofolate cyclo-ligase    PA5228
relation encodes
type nucleic acid sequence
action filter_type
action find_reverse
entity protein
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', '5-formyltetrahydrofolate cyclo-ligase    PA5228'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'protein']
SELECT DISTINCT ( COUNT ( ?u ) AS ?x ) WHERE { VALUES ( ?q ) { ( resource:5-formyltetrahydrofolate_cyclo-ligase____PA5228 ) ( resource:protein ) } . ?u property:encodes ?q }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23313552 Q18259021
P688
Q181394
USER
Which nutrients do Capn12 or ABC transporter substrate-binding protein    BN112_1447 encode ?
OR((Q18259021,P688,c(Q181394)), (Q23313552,P688,c(Q181394)))
action filter_type
action union
action find
entity Q18259021
relation P688
action find
entity Q23313552
relation P688
type Q181394
{'OR': [['Q18259021', 'P688', {'concept': 'Q181394'}], ['Q23313552', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:Q181394 . { { resource:Q18259021 property:P688 ?u } UNION { resource:Q23313552 property:P688 ?u } } }
ABC transporter substrate-binding protein    BN112_1447 Capn12
action filter_type
action union
action find
entity Capn12
relation encodes
action find
entity ABC transporter substrate-binding protein    BN112_1447
relation encodes
type nutrient
{'OR': [['Capn12', 'encodes', {'concept': 'nutrient'}], ['ABC transporter substrate-binding protein    BN112_1447', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:nutrient . { { resource:Capn12 property:encodes ?u } UNION { resource:ABC_transporter_substrate-binding_protein____BN112_1447 property:encodes ?u } } }
[]
nutrient
Q24115821 Q21980360
SYSTEM
ABC transporter substrate-binding protein    BN112_1447, Calpain-12
Q24115821 Q21980360
OR((Q18259021,P688,c(Q181394)), (Q23313552,P688,c(Q181394)))
action filter_type
action union
action find
entity Q18259021
relation P688
action find
entity Q23313552
relation P688
type Q181394
[ANSWERS]
{'OR': [['Q18259021', 'P688', {'concept': 'Q181394'}], ['Q23313552', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:Q181394 . { { resource:Q18259021 property:P688 ?u } UNION { resource:Q23313552 property:P688 ?u } } }
ABC transporter substrate-binding protein    BN112_1447 Calpain-12
ABC transporter substrate-binding protein BN112 1447 and Calpain-12 do Capn12 or ABC transporter substrate-binding protein BN112_1447 encode
ABC transporter substrate-binding protein    BN112_1447 Calpain-12
action filter_type
action union
action find
entity Capn12
relation encodes
action find
entity ABC transporter substrate-binding protein    BN112_1447
relation encodes
type nutrient
{'OR': [['Capn12', 'encodes', {'concept': 'nutrient'}], ['ABC transporter substrate-binding protein    BN112_1447', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:nutrient . { { resource:Capn12 property:encodes ?u } UNION { resource:ABC_transporter_substrate-binding_protein____BN112_1447 property:encodes ?u } } }
[]