Simple Question (Direct)
Simple Question
Q24119921
P680
Q44424
USER
What represents the molecular function of 4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799 ?
(Q24119921,P680,c(Q44424))
action filter_type
action find
entity Q24119921
relation P680
type Q44424
['Q24119921', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?t WHERE { resource:Q24119921 property:P680 ?t . ?t rdf:type ontology:Q44424 }
4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799
action filter_type
action find
entity 4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799
relation molecular function
type chemical bond
['4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?t WHERE { resource:4-hydroxythreonine-4-phosphate_dehydrogenase_PdxA____BN117_1799 property:molecular_function ?t . ?t rdf:type ontology:chemical_bond }
[]
chemical bond
Q14633865 Q13667380 Q14860850
SYSTEM
zinc ion binding, metal ion binding, magnesium ion binding
Q14633865 Q14860850 Q14763001 Q13667380
(Q24119921,P680,c(Q44424))
action filter_type
action find
entity Q24119921
relation P680
type Q44424
[ANSWERS] represent the molecular function of 4-hydroxythreonine-4-phosphate dehydrogenase PdxA BN117_1799
['Q24119921', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?t WHERE { resource:Q24119921 property:P680 ?t . ?t rdf:type ontology:Q44424 }
zinc ion binding magnesium ion binding cobalt ion binding metal ion binding
Zinc ion binding, metal ion binding and magnesium ion binding represent the molecular function of 4-hydroxythreonine-4-phosphate dehydrogenase PdxA BN117_1799
zinc ion binding metal ion binding magnesium ion binding
action filter_type
action find
entity 4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799
relation molecular function
type chemical bond
['4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?t WHERE { resource:4-hydroxythreonine-4-phosphate_dehydrogenase_PdxA____BN117_1799 property:molecular_function ?t . ?t rdf:type ontology:chemical_bond }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q24119921
P681
Q15989253
USER
Which is the part that is a component of 4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799 ?
(Q24119921,P681,c(Q15989253))
action filter_type
action find
entity Q24119921
relation P681
type Q15989253
['Q24119921', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?e WHERE { resource:Q24119921 property:P681 ?e . ?e rdf:type ontology:Q15989253 }
4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799
action filter_type
action find
entity 4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799
relation cell component
type part
['4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?e WHERE { resource:4-hydroxythreonine-4-phosphate_dehydrogenase_PdxA____BN117_1799 property:cell_component ?e . ?e rdf:type ontology:part }
[]
part
Q79899
SYSTEM
cytoplasm
Q79899
(Q24119921,P681,c(Q15989253))
action filter_type
action find
entity Q24119921
relation P681
type Q15989253
[ANSWER] is the part that is a component of 4-hydroxythreonine-4-phosphate dehydrogenase PdxA BN117_1799
['Q24119921', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?e WHERE { resource:Q24119921 property:P681 ?e . ?e rdf:type ontology:Q15989253 }
cytoplasm
Cytoplasm is the part that is a component of 4-hydroxythreonine-4-phosphate dehydrogenase PdxA BN117_1799
cytoplasm
action filter_type
action find
entity 4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799
relation cell component
type part
['4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?e WHERE { resource:4-hydroxythreonine-4-phosphate_dehydrogenase_PdxA____BN117_1799 property:cell_component ?e . ?e rdf:type ontology:part }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q24119921
P682
Q1057
USER
Which metabolic process is that nutrient involved in ?
(Q79899,P682,c(Q1057))
action filter_type
action find
entity Q24119921
relation P682
type Q1057
['Q79899', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?q WHERE { resource:Q24119921 property:P682 ?q . ?q rdf:type ontology:Q1057 }
4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799
action filter_type
action find
entity 4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799
relation biological process
type metabolic process
['cytoplasm', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?q WHERE { resource:4-hydroxythreonine-4-phosphate_dehydrogenase_PdxA____BN117_1799 property:biological_process ?q . ?q rdf:type ontology:metabolic_process }
[]
metabolic process
Q14349764
SYSTEM
oxidation-reduction process
Q14349764
(Q79899,P682,c(Q1057))
action filter_type
action find
entity Q24119921
relation P682
type Q1057
That nutrient is an [ANSWER]
['Q79899', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?q WHERE { resource:Q24119921 property:P682 ?q . ?q rdf:type ontology:Q1057 }
oxidation-reduction process
That nutrient is an oxidation-reduction process
oxidation-reduction process
action filter_type
action find
entity 4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799
relation biological process
type metabolic process
['cytoplasm', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?q WHERE { resource:4-hydroxythreonine-4-phosphate_dehydrogenase_PdxA____BN117_1799 property:biological_process ?q . ?q rdf:type ontology:metabolic_process }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q24119921
P688
Q863908
USER
Which nucleic acid sequence encodes 4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799 ?
(c(Q863908),P688,Q24119921)
action filter_type
action find_reverse
entity Q24119921
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q24119921']
SELECT DISTINCT ?v WHERE { ?v property:P688 resource:Q24119921 . ?v rdf:type ontology:Q863908 }
4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799
action filter_type
action find_reverse
entity 4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', '4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799']
SELECT DISTINCT ?v WHERE { ?v property:encodes resource:4-hydroxythreonine-4-phosphate_dehydrogenase_PdxA____BN117_1799 . ?v rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23414460
SYSTEM
4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799
Q23414460
(c(Q863908),P688,Q24119921)
action filter_type
action find_reverse
entity Q24119921
relation P688
type Q863908
4-hydroxythreonine-4-phosphate dehydrogenase PdxA BN117 1799 encodes 4-hydroxythreonine-4-phosphate dehydrogenase PdxA BN117_1799
[{'concept': 'Q863908'}, 'P688', 'Q24119921']
SELECT DISTINCT ?v WHERE { ?v property:P688 resource:Q24119921 . ?v rdf:type ontology:Q863908 }
4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799
4-hydroxythreonine-4-phosphate dehydrogenase PdxA BN117 1799 encodes 4-hydroxythreonine-4-phosphate dehydrogenase PdxA BN117_1799
4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799
action filter_type
action find_reverse
entity 4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', '4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799']
SELECT DISTINCT ?v WHERE { ?v property:encodes resource:4-hydroxythreonine-4-phosphate_dehydrogenase_PdxA____BN117_1799 . ?v rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q24119921
P702
Q863908
USER
What is the gene that encodes 4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799 ?
(Q24119921,P702,c(Q863908))
action filter_type
action find
entity Q24119921
relation P702
type Q863908
['Q24119921', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?s WHERE { resource:Q24119921 property:P702 ?s . ?s rdf:type ontology:Q863908 }
4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799
action filter_type
action find
entity 4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799
relation encoded by
type nucleic acid sequence
['4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?s WHERE { resource:4-hydroxythreonine-4-phosphate_dehydrogenase_PdxA____BN117_1799 property:encoded_by ?s . ?s rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23414460
SYSTEM
4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799
Q23414460
(Q24119921,P702,c(Q863908))
action filter_type
action find
entity Q24119921
relation P702
type Q863908
The gene that encodes 4-hydroxythreonine-4-phosphate dehydrogenase PdxA BN117_1799 is codes 4-hydroxythreonine-4-phosphate dehydrogenase PdxA BN117 1799
['Q24119921', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?s WHERE { resource:Q24119921 property:P702 ?s . ?s rdf:type ontology:Q863908 }
4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799
The gene that encodes 4-hydroxythreonine-4-phosphate dehydrogenase PdxA BN117_1799 is codes 4-hydroxythreonine-4-phosphate dehydrogenase PdxA BN117 1799
4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799
action filter_type
action find
entity 4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799
relation encoded by
type nucleic acid sequence
['4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?s WHERE { resource:4-hydroxythreonine-4-phosphate_dehydrogenase_PdxA____BN117_1799 property:encoded_by ?s . ?s rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|3 entities, 2 direct, 2(direct) are query entities, subject is indirect
Q23414460 Q24119921 Q23484891
P688
Q181394
USER
Does that nucleic acid sequence encodes 4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799 and competence protein ComEC/Rec2    DR_1854 ?
(Q23414460,P688,Q24119921) (Q23414460,P688,Q23484891)
action is_in
entity Q23414460
action intersection
action find_reverse
entity Q24119921
relation P688
action find_reverse
entity Q23484891
relation P688
['Q23414460', 'P688', 'Q24119921'] ['Q23414460', 'P688', 'Q23484891']
ASK WHERE { resource:Q23414460 property:P688 resource:Q24119921 . resource:Q23414460 property:P688 resource:Q23484891 }
4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799 4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799 competence protein ComEC/Rec2    DR_1854
action is_in
entity 4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799
action intersection
action find_reverse
entity 4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799
relation encodes
action find_reverse
entity competence protein ComEC/Rec2    DR_1854
relation encodes
['4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799', 'encodes', '4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799'] ['4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799', 'encodes', 'competence protein ComEC/Rec2    DR_1854']
ASK WHERE { resource:4-hydroxythreonine-4-phosphate_dehydrogenase_PdxA____BN117_1799 property:encodes resource:4-hydroxythreonine-4-phosphate_dehydrogenase_PdxA____BN117_1799 . resource:4-hydroxythreonine-4-phosphate_dehydrogenase_PdxA____BN117_1799 property:encodes resource:competence_protein_ComEC/Rec2____DR_1854 }
[]
nutrient
SYSTEM
YES and NO respectively
(Q23414460,P688,Q24119921) (Q23414460,P688,Q23484891)
action is_in
entity Q23414460
action intersection
action find_reverse
entity Q24119921
relation P688
action find_reverse
entity Q23484891
relation P688
[ANSWER]
['Q23414460', 'P688', 'Q24119921'] ['Q23414460', 'P688', 'Q23484891']
ASK WHERE { resource:Q23414460 property:P688 resource:Q24119921 . resource:Q23414460 property:P688 resource:Q23484891 }
YES and NO respectively
action is_in
entity 4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799
action intersection
action find_reverse
entity 4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799
relation encodes
action find_reverse
entity competence protein ComEC/Rec2    DR_1854
relation encodes
['4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799', 'encodes', '4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799'] ['4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799', 'encodes', 'competence protein ComEC/Rec2    DR_1854']
ASK WHERE { resource:4-hydroxythreonine-4-phosphate_dehydrogenase_PdxA____BN117_1799 property:encodes resource:4-hydroxythreonine-4-phosphate_dehydrogenase_PdxA____BN117_1799 . resource:4-hydroxythreonine-4-phosphate_dehydrogenase_PdxA____BN117_1799 property:encodes resource:competence_protein_ComEC/Rec2____DR_1854 }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23414460
P703
Q631147
USER
Which taxon does 4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799 belong to ?
(Q23414460,P703,c(Q631147))
action filter_type
action find
entity Q23414460
relation P703
type Q631147
['Q23414460', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?r WHERE { resource:Q23414460 property:P703 ?r . ?r rdf:type ontology:Q631147 }
4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799
action filter_type
action find
entity 4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799
relation found in taxon
type infraspecific name
['4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?r WHERE { resource:4-hydroxythreonine-4-phosphate_dehydrogenase_PdxA____BN117_1799 property:found_in_taxon ?r . ?r rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21064863
SYSTEM
Bordetella parapertussis Bpp5
Q21064863
(Q23414460,P703,c(Q631147))
action filter_type
action find
entity Q23414460
relation P703
type Q631147
[ANSWER] 4-hydroxythreonine-4-phosphate dehydrogenase PdxA BN117_1799 belongs to
['Q23414460', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?r WHERE { resource:Q23414460 property:P703 ?r . ?r rdf:type ontology:Q631147 }
Bordetella parapertussis Bpp5
Bordetella parapertussis Bpp5 4-hydroxythreonine-4-phosphate dehydrogenase PdxA BN117_1799 belongs to
Bordetella parapertussis Bpp5
action filter_type
action find
entity 4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799
relation found in taxon
type infraspecific name
['4-hydroxythreonine-4-phosphate dehydrogenase PdxA    BN117_1799', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?r WHERE { resource:4-hydroxythreonine-4-phosphate_dehydrogenase_PdxA____BN117_1799 property:found_in_taxon ?r . ?r rdf:type ontology:infraspecific_name }
[]