Simple Question (Direct)
Simple Question
Q23460102
P702
Q863908
USER
What is the gene that encodes long-chain-fatty-acid--CoA ligase    FN0867 ?
(Q23460102,P702,c(Q863908))
action filter_type
action find
entity Q23460102
relation P702
type Q863908
['Q23460102', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?d WHERE { resource:Q23460102 property:P702 ?d . ?d rdf:type ontology:Q863908 }
long-chain-fatty-acid--CoA ligase    FN0867
action filter_type
action find
entity long-chain-fatty-acid--CoA ligase    FN0867
relation encoded by
type nucleic acid sequence
['long-chain-fatty-acid--CoA ligase    FN0867', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?d WHERE { resource:long-chain-fatty-acid--CoA_ligase____FN0867 property:encoded_by ?d . ?d rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23115778
SYSTEM
long-chain-fatty-acid--CoA ligase    FN0867
Q23115778
(Q23460102,P702,c(Q863908))
action filter_type
action find
entity Q23460102
relation P702
type Q863908
The gene that encodes long-chain-fatty -acid --CoA ligase FN0867 is a long-chain-fatty-acid--CoA ligase FN0867
['Q23460102', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?d WHERE { resource:Q23460102 property:P702 ?d . ?d rdf:type ontology:Q863908 }
long-chain-fatty-acid--CoA ligase    FN0867
The gene that encodes long-chain-fatty -acid --CoA ligase FN0867 is a long-chain-fatty-acid--CoA ligase FN0867
long-chain-fatty-acid--CoA ligase    FN0867
action filter_type
action find
entity long-chain-fatty-acid--CoA ligase    FN0867
relation encoded by
type nucleic acid sequence
['long-chain-fatty-acid--CoA ligase    FN0867', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?d WHERE { resource:long-chain-fatty-acid--CoA_ligase____FN0867 property:encoded_by ?d . ?d rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23115778
P703
Q631147
USER
Which infraspecific name is that nucleic acid sequence found in ?
(Q23115778,P703,c(Q631147))
action filter_type
action find
entity Q23115778
relation P703
type Q631147
['Q23115778', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?c WHERE { resource:Q23115778 property:P703 ?c . ?c rdf:type ontology:Q631147 }
long-chain-fatty-acid--CoA ligase    FN0867
action filter_type
action find
entity long-chain-fatty-acid--CoA ligase    FN0867
relation found in taxon
type infraspecific name
['long-chain-fatty-acid--CoA ligase    FN0867', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?c WHERE { resource:long-chain-fatty-acid--CoA_ligase____FN0867 property:found_in_taxon ?c . ?c rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102951
SYSTEM
Fusobacterium nucleatum subsp. nucleatum ATCC 25586
Q21102951
(Q23115778,P703,c(Q631147))
action filter_type
action find
entity Q23115778
relation P703
type Q631147
That nucleic acid sequence is found in [ANSWER]
['Q23115778', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?c WHERE { resource:Q23115778 property:P703 ?c . ?c rdf:type ontology:Q631147 }
Fusobacterium nucleatum subsp. nucleatum ATCC 25586
That nucleic acid sequence is found in Fusobacterium nucleatum subsp. nucleatum ATCC 25586
Fusobacterium nucleatum subsp. nucleatum ATCC 25586
action filter_type
action find
entity long-chain-fatty-acid--CoA ligase    FN0867
relation found in taxon
type infraspecific name
['long-chain-fatty-acid--CoA ligase    FN0867', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?c WHERE { resource:long-chain-fatty-acid--CoA_ligase____FN0867 property:found_in_taxon ?c . ?c rdf:type ontology:infraspecific_name }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation|Incomplete
Q23270058 Q23115778
P703
Q631147
USER
Or creatininase subfamily protein    MSMEG_1425?
OR((Q23115778,P703,c(Q631147)), (Q23270058,P703,c(Q631147)))
action filter_type
action union
action find
entity Q23115778
relation P703
action find
entity Q23270058
relation P703
type Q631147
{'OR': [['Q23115778', 'P703', {'concept': 'Q631147'}], ['Q23270058', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?k WHERE { { ?r property:P703 ?k . VALUES ( ?r ) { ( resource:Q23270058 ) ( resource:Q23115778 ) } } . ?k rdf:type ontology:Q631147 }
creatininase subfamily protein    MSMEG_1425 long-chain-fatty-acid--CoA ligase    FN0867
action filter_type
action union
action find
entity long-chain-fatty-acid--CoA ligase    FN0867
relation found in taxon
action find
entity creatininase subfamily protein    MSMEG_1425
relation found in taxon
type infraspecific name
{'OR': [['long-chain-fatty-acid--CoA ligase    FN0867', 'found in taxon', {'concept': 'infraspecific name'}], ['creatininase subfamily protein    MSMEG_1425', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?k WHERE { { ?r property:found_in_taxon ?k . VALUES ( ?r ) { ( resource:creatininase_subfamily_protein____MSMEG_1425 ) ( resource:long-chain-fatty-acid--CoA_ligase____FN0867 ) } } . ?k rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102986 Q21102951
SYSTEM
Mycobacterium smegmatis str. MC2 155, Fusobacterium nucleatum subsp. nucleatum ATCC 25586
Q21102986 Q21102951
OR((Q23115778,P703,c(Q631147)), (Q23270058,P703,c(Q631147)))
action filter_type
action union
action find
entity Q23115778
relation P703
action find
entity Q23270058
relation P703
type Q631147
[ANSWERS]
{'OR': [['Q23115778', 'P703', {'concept': 'Q631147'}], ['Q23270058', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?k WHERE { { ?r property:P703 ?k . VALUES ( ?r ) { ( resource:Q23270058 ) ( resource:Q23115778 ) } } . ?k rdf:type ontology:Q631147 }
Mycobacterium smegmatis str. MC2 155 Fusobacterium nucleatum subsp. nucleatum ATCC 25586
Mycobacterium smegmatis str. MC2 155 Fusobacterium nucleatum subsp. nucleatum ATCC 25586
action filter_type
action union
action find
entity long-chain-fatty-acid--CoA ligase    FN0867
relation found in taxon
action find
entity creatininase subfamily protein    MSMEG_1425
relation found in taxon
type infraspecific name
{'OR': [['long-chain-fatty-acid--CoA ligase    FN0867', 'found in taxon', {'concept': 'infraspecific name'}], ['creatininase subfamily protein    MSMEG_1425', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?k WHERE { { ?r property:found_in_taxon ?k . VALUES ( ?r ) { ( resource:creatininase_subfamily_protein____MSMEG_1425 ) ( resource:long-chain-fatty-acid--CoA_ligase____FN0867 ) } } . ?k rdf:type ontology:infraspecific_name }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q24133454 Q23460102
P688
Q863908
USER
Which nucleic acid sequences encode long-chain-fatty-acid--CoA ligase    FN0867 or hypothetical protein    ECL_02120 ?
OR((c(Q863908),P688,Q23460102), (c(Q863908),P688,Q24133454))
action filter_type
action union
action find_reverse
entity Q23460102
relation P688
action find_reverse
entity Q24133454
relation P688
type Q863908
{'OR': [[{'concept': 'Q863908'}, 'P688', 'Q23460102'], [{'concept': 'Q863908'}, 'P688', 'Q24133454']]}
SELECT DISTINCT ?f WHERE { { ?f property:P688 ?a . VALUES ( ?a ) { ( resource:Q23460102 ) ( resource:Q24133454 ) } } . ?f rdf:type ontology:Q863908 }
hypothetical protein    ECL_02120 long-chain-fatty-acid--CoA ligase    FN0867
action filter_type
action union
action find_reverse
entity long-chain-fatty-acid--CoA ligase    FN0867
relation encodes
action find_reverse
entity hypothetical protein    ECL_02120
relation encodes
type nucleic acid sequence
{'OR': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'long-chain-fatty-acid--CoA ligase    FN0867'], [{'concept': 'nucleic acid sequence'}, 'encodes', 'hypothetical protein    ECL_02120']]}
SELECT DISTINCT ?f WHERE { { ?f property:encodes ?a . VALUES ( ?a ) { ( resource:long-chain-fatty-acid--CoA_ligase____FN0867 ) ( resource:hypothetical_protein____ECL_02120 ) } } . ?f rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23081424 Q23115778
SYSTEM
hypothetical protein    ECL_02120, long-chain-fatty-acid--CoA ligase    FN0867
Q23081424 Q23115778
OR((c(Q863908),P688,Q23460102), (c(Q863908),P688,Q24133454))
action filter_type
action union
action find_reverse
entity Q23460102
relation P688
action find_reverse
entity Q24133454
relation P688
type Q863908
[ANSWERS]
{'OR': [[{'concept': 'Q863908'}, 'P688', 'Q23460102'], [{'concept': 'Q863908'}, 'P688', 'Q24133454']]}
SELECT DISTINCT ?f WHERE { { ?f property:P688 ?a . VALUES ( ?a ) { ( resource:Q23460102 ) ( resource:Q24133454 ) } } . ?f rdf:type ontology:Q863908 }
hypothetical protein    ECL_02120 long-chain-fatty-acid--CoA ligase    FN0867
Hypothetical protein ECL 02120 and long-chain-fatty-acid--CoA ligase FN0867 encode long-chain-fatty-acid--CoA ligase FN0867 or hypothetical protein ECL_02120
hypothetical protein    ECL_02120 long-chain-fatty-acid--CoA ligase    FN0867
action filter_type
action union
action find_reverse
entity long-chain-fatty-acid--CoA ligase    FN0867
relation encodes
action find_reverse
entity hypothetical protein    ECL_02120
relation encodes
type nucleic acid sequence
{'OR': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'long-chain-fatty-acid--CoA ligase    FN0867'], [{'concept': 'nucleic acid sequence'}, 'encodes', 'hypothetical protein    ECL_02120']]}
SELECT DISTINCT ?f WHERE { { ?f property:encodes ?a . VALUES ( ?a ) { ( resource:long-chain-fatty-acid--CoA_ligase____FN0867 ) ( resource:hypothetical_protein____ECL_02120 ) } } . ?f rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Mult. Entity
Q23081424 Q23115778
P702
Q181394
USER
Which nutrients are encoded by those nucleic acid sequences ?
(c(Q181394),P702,Q23081424) (c(Q181394),P702,Q23115778)
action filter_type
action find_reverse
entity prev_answer
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q23081424'] [{'concept': 'Q181394'}, 'P702', 'Q23115778']
SELECT DISTINCT ?h WHERE { ?h rdf:type ontology:Q181394 . VALUES ( ?v ) { ( resource:Q23081424 ) ( resource:Q23115778 ) } . ?h property:P702 ?v }
hypothetical protein    ECL_02120 long-chain-fatty-acid--CoA ligase    FN0867
action filter_type
action find_reverse
entity prev_answer
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'hypothetical protein    ECL_02120'] [{'concept': 'nutrient'}, 'encoded by', 'long-chain-fatty-acid--CoA ligase    FN0867']
SELECT DISTINCT ?h WHERE { ?h rdf:type ontology:nutrient . VALUES ( ?v ) { ( resource:hypothetical_protein____ECL_02120 ) ( resource:long-chain-fatty-acid--CoA_ligase____FN0867 ) } . ?h property:encoded_by ?v }
[]
nutrient
Q24133454 Q23460102
SYSTEM
hypothetical protein    ECL_02120, long-chain-fatty-acid--CoA ligase    FN0867
Q24133454 Q23460102
(c(Q181394),P702,Q23081424) (c(Q181394),P702,Q23115778)
action filter_type
action find_reverse
entity prev_answer
relation P702
type Q181394
[ANSWERS]
[{'concept': 'Q181394'}, 'P702', 'Q23081424'] [{'concept': 'Q181394'}, 'P702', 'Q23115778']
SELECT DISTINCT ?h WHERE { ?h rdf:type ontology:Q181394 . VALUES ( ?v ) { ( resource:Q23081424 ) ( resource:Q23115778 ) } . ?h property:P702 ?v }
hypothetical protein    ECL_02120 long-chain-fatty-acid--CoA ligase    FN0867
Hypothetical protein ECL 02120 and long-chain-fatty-acid--CoA ligase FN0867 are encoded by those nucleic acid sequences
hypothetical protein    ECL_02120 long-chain-fatty-acid--CoA ligase    FN0867
action filter_type
action find_reverse
entity prev_answer
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'hypothetical protein    ECL_02120'] [{'concept': 'nutrient'}, 'encoded by', 'long-chain-fatty-acid--CoA ligase    FN0867']
SELECT DISTINCT ?h WHERE { ?h rdf:type ontology:nutrient . VALUES ( ?v ) { ( resource:hypothetical_protein____ECL_02120 ) ( resource:long-chain-fatty-acid--CoA_ligase____FN0867 ) } . ?h property:encoded_by ?v }
[]
Simple Question (Coreferenced)
Simple Question|Mult. Entity
Q24133454 Q23460102
P703
Q631147
USER
Which taxons are those nutrients a part of ?
(Q24133454,P703,c(Q631147)) (Q23460102,P703,c(Q631147))
action filter_type
action find
entity prev_answer
relation P703
type Q631147
['Q24133454', 'P703', {'concept': 'Q631147'}] ['Q23460102', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?j WHERE { ?i property:P703 ?j . ?j rdf:type ontology:Q631147 . VALUES ( ?i ) { ( resource:Q24133454 ) ( resource:Q23460102 ) } }
hypothetical protein    ECL_02120 long-chain-fatty-acid--CoA ligase    FN0867
action filter_type
action find
entity prev_answer
relation found in taxon
type infraspecific name
['hypothetical protein    ECL_02120', 'found in taxon', {'concept': 'infraspecific name'}] ['long-chain-fatty-acid--CoA ligase    FN0867', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?j WHERE { ?i property:found_in_taxon ?j . ?j rdf:type ontology:infraspecific_name . VALUES ( ?i ) { ( resource:hypothetical_protein____ECL_02120 ) ( resource:long-chain-fatty-acid--CoA_ligase____FN0867 ) } }
[]
infraspecific name
Q21102928 Q21102951
SYSTEM
Enterobacter cloacae subsp. cloacae ATCC 13047, Fusobacterium nucleatum subsp. nucleatum ATCC 25586
Q21102928 Q21102951
(Q24133454,P703,c(Q631147)) (Q23460102,P703,c(Q631147))
action filter_type
action find
entity prev_answer
relation P703
type Q631147
[ANSWERS] are those nutrients a part of
['Q24133454', 'P703', {'concept': 'Q631147'}] ['Q23460102', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?j WHERE { ?i property:P703 ?j . ?j rdf:type ontology:Q631147 . VALUES ( ?i ) { ( resource:Q24133454 ) ( resource:Q23460102 ) } }
Enterobacter cloacae subsp. cloacae ATCC 13047 Fusobacterium nucleatum subsp. nucleatum ATCC 25586
Enterobacter cloacae subsp. cloacae ATCC 13047 and Fusobacterium nucleatum subsp. nucleatum ATCC 25586 are those nutrients a part of
Enterobacter cloacae subsp. cloacae ATCC 13047 Fusobacterium nucleatum subsp. nucleatum ATCC 25586
action filter_type
action find
entity prev_answer
relation found in taxon
type infraspecific name
['hypothetical protein    ECL_02120', 'found in taxon', {'concept': 'infraspecific name'}] ['long-chain-fatty-acid--CoA ligase    FN0867', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?j WHERE { ?i property:found_in_taxon ?j . ?j rdf:type ontology:infraspecific_name . VALUES ( ?i ) { ( resource:hypothetical_protein____ECL_02120 ) ( resource:long-chain-fatty-acid--CoA_ligase____FN0867 ) } }
[]