Simple Question (Direct)
Simple Question
Q23549815
P703
Q16521
USER
Which taxon is indole-3-glycerol phosphate synthase    THEYE_A0021 found in ?
(Q23549815,P703,c(Q16521))
action filter_type
action find
entity Q23549815
relation P703
type Q16521
['Q23549815', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?b WHERE { resource:Q23549815 property:P703 ?b . ?b rdf:type ontology:Q16521 }
indole-3-glycerol phosphate synthase    THEYE_A0021
action filter_type
action find
entity indole-3-glycerol phosphate synthase    THEYE_A0021
relation found in taxon
type taxon
['indole-3-glycerol phosphate synthase    THEYE_A0021', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?b WHERE { resource:indole-3-glycerol_phosphate_synthase____THEYE_A0021 property:found_in_taxon ?b . ?b rdf:type ontology:taxon }
[]
taxon
Q23309243
SYSTEM
Thermodesulfovibrio yellowstonii DSM 11347
Q23309243
(Q23549815,P703,c(Q16521))
action filter_type
action find
entity Q23549815
relation P703
type Q16521
[ANSWER] is indole-3-glycerol phosphate synthase THEYE_A0021 found in
['Q23549815', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?b WHERE { resource:Q23549815 property:P703 ?b . ?b rdf:type ontology:Q16521 }
Thermodesulfovibrio yellowstonii DSM 11347
Thermodesulfovibrio yellowstonii DSM 11347 is indole-3-glycerol phosphate synthase THEYE_A0021 found in
Thermodesulfovibrio yellowstonii DSM 11347
action filter_type
action find
entity indole-3-glycerol phosphate synthase    THEYE_A0021
relation found in taxon
type taxon
['indole-3-glycerol phosphate synthase    THEYE_A0021', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?b WHERE { resource:indole-3-glycerol_phosphate_synthase____THEYE_A0021 property:found_in_taxon ?b . ?b rdf:type ontology:taxon }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23549815
P682
Q3249551
USER
Which process is that nutrient involved in ?
(Q23309243,P682,c(Q3249551))
action filter_type
action find
entity Q23549815
relation P682
type Q3249551
['Q23309243', 'P682', {'concept': 'Q3249551'}]
SELECT DISTINCT ?j WHERE { resource:Q23549815 property:P682 ?j . ?j rdf:type ontology:Q3249551 }
indole-3-glycerol phosphate synthase    THEYE_A0021
action filter_type
action find
entity indole-3-glycerol phosphate synthase    THEYE_A0021
relation biological process
type process
['Thermodesulfovibrio yellowstonii DSM 11347', 'biological process', {'concept': 'process'}]
SELECT DISTINCT ?j WHERE { resource:indole-3-glycerol_phosphate_synthase____THEYE_A0021 property:biological_process ?j . ?j rdf:type ontology:process }
[]
process
Q1057
SYSTEM
metabolic process
Q1057
(Q23309243,P682,c(Q3249551))
action filter_type
action find
entity Q23549815
relation P682
type Q3249551
That nutrient is involved in [ANSWER]
['Q23309243', 'P682', {'concept': 'Q3249551'}]
SELECT DISTINCT ?j WHERE { resource:Q23549815 property:P682 ?j . ?j rdf:type ontology:Q3249551 }
metabolic process
That nutrient is involved in metabolic process
metabolic process
action filter_type
action find
entity indole-3-glycerol phosphate synthase    THEYE_A0021
relation biological process
type process
['Thermodesulfovibrio yellowstonii DSM 11347', 'biological process', {'concept': 'process'}]
SELECT DISTINCT ?j WHERE { resource:indole-3-glycerol_phosphate_synthase____THEYE_A0021 property:biological_process ?j . ?j rdf:type ontology:process }
[]
Logical Reasoning (All)
Logical|Intersection|Single_Relation|Incomplete
Q21121767 Q23549815
P682
Q3249551
USER
And also 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial
AND((Q23549815,P682,c(Q3249551)), (Q21121767,P682,c(Q3249551)))
action filter_type
action intersection
action find
entity Q23549815
relation P682
action find
entity Q21121767
relation P682
type Q3249551
{'AND': [['Q23549815', 'P682', {'concept': 'Q3249551'}], ['Q21121767', 'P682', {'concept': 'Q3249551'}]]}
SELECT DISTINCT ?l WHERE { resource:Q23549815 property:P682 ?l . resource:Q21121767 property:P682 ?l . ?l rdf:type ontology:Q3249551 }
2-oxoisovalerate dehydrogenase subunit beta, mitochondrial indole-3-glycerol phosphate synthase    THEYE_A0021
action filter_type
action intersection
action find
entity indole-3-glycerol phosphate synthase    THEYE_A0021
relation biological process
action find
entity 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial
relation biological process
type process
{'AND': [['indole-3-glycerol phosphate synthase    THEYE_A0021', 'biological process', {'concept': 'process'}], ['2-oxoisovalerate dehydrogenase subunit beta, mitochondrial', 'biological process', {'concept': 'process'}]]}
SELECT DISTINCT ?l WHERE { resource:indole-3-glycerol_phosphate_synthase____THEYE_A0021 property:biological_process ?l . resource:2-oxoisovalerate_dehydrogenase_subunit_beta,_mitochondrial property:biological_process ?l . ?l rdf:type ontology:process }
[]
process
Q1057
SYSTEM
metabolic process
Q1057
AND((Q23549815,P682,c(Q3249551)), (Q21121767,P682,c(Q3249551)))
action filter_type
action intersection
action find
entity Q23549815
relation P682
action find
entity Q21121767
relation P682
type Q3249551
[ANSWER]
{'AND': [['Q23549815', 'P682', {'concept': 'Q3249551'}], ['Q21121767', 'P682', {'concept': 'Q3249551'}]]}
SELECT DISTINCT ?l WHERE { resource:Q23549815 property:P682 ?l . resource:Q21121767 property:P682 ?l . ?l rdf:type ontology:Q3249551 }
metabolic process
metabolic process
action filter_type
action intersection
action find
entity indole-3-glycerol phosphate synthase    THEYE_A0021
relation biological process
action find
entity 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial
relation biological process
type process
{'AND': [['indole-3-glycerol phosphate synthase    THEYE_A0021', 'biological process', {'concept': 'process'}], ['2-oxoisovalerate dehydrogenase subunit beta, mitochondrial', 'biological process', {'concept': 'process'}]]}
SELECT DISTINCT ?l WHERE { resource:indole-3-glycerol_phosphate_synthase____THEYE_A0021 property:biological_process ?l . resource:2-oxoisovalerate_dehydrogenase_subunit_beta,_mitochondrial property:biological_process ?l . ?l rdf:type ontology:process }
[]
Simple Question (Ellipsis)
Incomplete|object parent is changed, subject and predicate remain same
Q21121767
Q16521
USER
And which taxon?
(Q21121767,P703,c(Q16521))
action filter_type
action find
entity Q21121767
relation P703
type Q16521
['Q21121767', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?y WHERE { resource:Q21121767 property:P703 ?y . ?y rdf:type ontology:Q16521 }
2-oxoisovalerate dehydrogenase subunit beta, mitochondrial
action filter_type
action find
entity 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial
relation found in taxon
type taxon
['2-oxoisovalerate dehydrogenase subunit beta, mitochondrial', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?y WHERE { resource:2-oxoisovalerate_dehydrogenase_subunit_beta,_mitochondrial property:found_in_taxon ?y . ?y rdf:type ontology:taxon }
[]
taxon
Q15978631
SYSTEM
Homo sapiens
Q15978631
(Q21121767,P703,c(Q16521))
action filter_type
action find
entity Q21121767
relation P703
type Q16521
[ANSWER]
['Q21121767', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?y WHERE { resource:Q21121767 property:P703 ?y . ?y rdf:type ontology:Q16521 }
Homo sapiens
Homo sapiens
action filter_type
action find
entity 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial
relation found in taxon
type taxon
['2-oxoisovalerate dehydrogenase subunit beta, mitochondrial', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?y WHERE { resource:2-oxoisovalerate_dehydrogenase_subunit_beta,_mitochondrial property:found_in_taxon ?y . ?y rdf:type ontology:taxon }
[]
Logical Reasoning (All)
Logical|Intersection|Multiple_Relation
Q15978631 Q21121767
P703 P688
Q863908
USER
Which nucleic acid sequences encodes 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial and are found in the taxon Homo sapiens ?
AND((c(Q863908),P688,Q21121767), (c(Q863908),P703,Q15978631))
action filter_type
action intersection
action find_reverse
entity Q21121767
relation P688
action find_reverse
entity Q15978631
relation P703
type Q863908
{'AND': [[{'concept': 'Q863908'}, 'P688', 'Q21121767'], [{'concept': 'Q863908'}, 'P703', 'Q15978631']]}
SELECT DISTINCT ?w WHERE { ?w property:P703 resource:Q15978631 . ?w property:P688 resource:Q21121767 . ?w rdf:type ontology:Q863908 }
Homo sapiens 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial
action filter_type
action intersection
action find_reverse
entity 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial
relation encodes
action find_reverse
entity Homo sapiens
relation found in taxon
type nucleic acid sequence
{'AND': [[{'concept': 'nucleic acid sequence'}, 'encodes', '2-oxoisovalerate dehydrogenase subunit beta, mitochondrial'], [{'concept': 'nucleic acid sequence'}, 'found in taxon', 'Homo sapiens']]}
SELECT DISTINCT ?w WHERE { ?w property:found_in_taxon resource:Homo_sapiens . ?w property:encodes resource:2-oxoisovalerate_dehydrogenase_subunit_beta,_mitochondrial . ?w rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q17846579
SYSTEM
BCKDHB
Q17846579
AND((c(Q863908),P688,Q21121767), (c(Q863908),P703,Q15978631))
action filter_type
action intersection
action find_reverse
entity Q21121767
relation P688
action find_reverse
entity Q15978631
relation P703
type Q863908
[ANSWER] encodes 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial and are found in the taxon Homo sapiens
{'AND': [[{'concept': 'Q863908'}, 'P688', 'Q21121767'], [{'concept': 'Q863908'}, 'P703', 'Q15978631']]}
SELECT DISTINCT ?w WHERE { ?w property:P703 resource:Q15978631 . ?w property:P688 resource:Q21121767 . ?w rdf:type ontology:Q863908 }
BCKDHB
BCKDHB encodes 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial and are found in the taxon Homo sapiens
BCKDHB
action filter_type
action intersection
action find_reverse
entity 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial
relation encodes
action find_reverse
entity Homo sapiens
relation found in taxon
type nucleic acid sequence
{'AND': [[{'concept': 'nucleic acid sequence'}, 'encodes', '2-oxoisovalerate dehydrogenase subunit beta, mitochondrial'], [{'concept': 'nucleic acid sequence'}, 'found in taxon', 'Homo sapiens']]}
SELECT DISTINCT ?w WHERE { ?w property:found_in_taxon resource:Homo_sapiens . ?w property:encodes resource:2-oxoisovalerate_dehydrogenase_subunit_beta,_mitochondrial . ?w rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, subject is indirect
Q17846579 Q23538057
P688
Q181394
USER
Is that nucleic acid sequence an encoding of putative transmembrane transcriptional regulator (anti-sigma factor)    Moth_0959 ?
(Q17846579,P688,Q23538057)
action is_in
entity Q23538057
action find
entity Q17846579
relation P688
['Q17846579', 'P688', 'Q23538057']
ASK WHERE { resource:Q17846579 property:P688 resource:Q23538057 }
BCKDHB putative transmembrane transcriptional regulator (anti-sigma factor)    Moth_0959
action is_in
entity putative transmembrane transcriptional regulator (anti-sigma factor)    Moth_0959
action find
entity BCKDHB
relation encodes
['BCKDHB', 'encodes', 'putative transmembrane transcriptional regulator (anti-sigma factor)    Moth_0959']
ASK WHERE { resource:BCKDHB property:encodes resource:putative_transmembrane_transcriptional_regulator_(anti-sigma_factor)____Moth_0959 }
[]
nutrient
SYSTEM
NO
(Q17846579,P688,Q23538057)
action is_in
entity Q23538057
action find
entity Q17846579
relation P688
[ANSWER]
['Q17846579', 'P688', 'Q23538057']
ASK WHERE { resource:Q17846579 property:P688 resource:Q23538057 }
No
action is_in
entity putative transmembrane transcriptional regulator (anti-sigma factor)    Moth_0959
action find
entity BCKDHB
relation encodes
['BCKDHB', 'encodes', 'putative transmembrane transcriptional regulator (anti-sigma factor)    Moth_0959']
ASK WHERE { resource:BCKDHB property:encodes resource:putative_transmembrane_transcriptional_regulator_(anti-sigma_factor)____Moth_0959 }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23502232 Q21121767
P688
Q863908
USER
Which nucleic acid sequences encodes 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial or Cro/CI family transcriptional regulator    EF2350 ?
OR((c(Q863908),P688,Q21121767), (c(Q863908),P688,Q23502232))
action filter_type
action union
action find_reverse
entity Q21121767
relation P688
action find_reverse
entity Q23502232
relation P688
type Q863908
{'OR': [[{'concept': 'Q863908'}, 'P688', 'Q21121767'], [{'concept': 'Q863908'}, 'P688', 'Q23502232']]}
SELECT DISTINCT ?l WHERE { { ?l property:P688 ?s . VALUES ( ?s ) { ( resource:Q23502232 ) ( resource:Q21121767 ) } } . ?l rdf:type ontology:Q863908 }
Cro/CI family transcriptional regulator    EF2350 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial
action filter_type
action union
action find_reverse
entity 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial
relation encodes
action find_reverse
entity Cro/CI family transcriptional regulator    EF2350
relation encodes
type nucleic acid sequence
{'OR': [[{'concept': 'nucleic acid sequence'}, 'encodes', '2-oxoisovalerate dehydrogenase subunit beta, mitochondrial'], [{'concept': 'nucleic acid sequence'}, 'encodes', 'Cro/CI family transcriptional regulator    EF2350']]}
SELECT DISTINCT ?l WHERE { { ?l property:encodes ?s . VALUES ( ?s ) { ( resource:Cro/CI_family_transcriptional_regulator____EF2350 ) ( resource:2-oxoisovalerate_dehydrogenase_subunit_beta,_mitochondrial ) } } . ?l rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q17846579 Q23177450
SYSTEM
BCKDHB, Cro/CI family transcriptional regulator    EF2350
Q17846579 Q23177450
OR((c(Q863908),P688,Q21121767), (c(Q863908),P688,Q23502232))
action filter_type
action union
action find_reverse
entity Q21121767
relation P688
action find_reverse
entity Q23502232
relation P688
type Q863908
[ANSWERS]
{'OR': [[{'concept': 'Q863908'}, 'P688', 'Q21121767'], [{'concept': 'Q863908'}, 'P688', 'Q23502232']]}
SELECT DISTINCT ?l WHERE { { ?l property:P688 ?s . VALUES ( ?s ) { ( resource:Q23502232 ) ( resource:Q21121767 ) } } . ?l rdf:type ontology:Q863908 }
BCKDHB Cro/CI family transcriptional regulator    EF2350
BCKDHB and Cro/CI family transcriptional regulator EF2350 encode 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial or Cro/CI family transcriptional regulator EF2350
BCKDHB Cro/CI family transcriptional regulator    EF2350
action filter_type
action union
action find_reverse
entity 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial
relation encodes
action find_reverse
entity Cro/CI family transcriptional regulator    EF2350
relation encodes
type nucleic acid sequence
{'OR': [[{'concept': 'nucleic acid sequence'}, 'encodes', '2-oxoisovalerate dehydrogenase subunit beta, mitochondrial'], [{'concept': 'nucleic acid sequence'}, 'encodes', 'Cro/CI family transcriptional regulator    EF2350']]}
SELECT DISTINCT ?l WHERE { { ?l property:encodes ?s . VALUES ( ?s ) { ( resource:Cro/CI_family_transcriptional_regulator____EF2350 ) ( resource:2-oxoisovalerate_dehydrogenase_subunit_beta,_mitochondrial ) } } . ?l rdf:type ontology:nucleic_acid_sequence }
[]