Simple Question (Direct)
Simple Question
Q23448735
P702
Q863908
USER
Which nucleic acid sequence encodes cytochrome C (cycM)    RP253 ?
(Q23448735,P702,c(Q863908))
action filter_type
action find
entity Q23448735
relation P702
type Q863908
['Q23448735', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?i WHERE { resource:Q23448735 property:P702 ?i . ?i rdf:type ontology:Q863908 }
cytochrome C (cycM)    RP253
action filter_type
action find
entity cytochrome C (cycM)    RP253
relation encoded by
type nucleic acid sequence
['cytochrome C (cycM)    RP253', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?i WHERE { resource:cytochrome_C_(cycM)____RP253 property:encoded_by ?i . ?i rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23381008
SYSTEM
cytochrome C (cycM)    RP253
Q23381008
(Q23448735,P702,c(Q863908))
action filter_type
action find
entity Q23448735
relation P702
type Q863908
Cytochrome C (cycM) RP253 encodes cytochrome C (cycM) RP253
['Q23448735', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?i WHERE { resource:Q23448735 property:P702 ?i . ?i rdf:type ontology:Q863908 }
cytochrome C (cycM)    RP253
Cytochrome C (cycM) RP253 encodes cytochrome C (cycM) RP253
cytochrome C (cycM)    RP253
action filter_type
action find
entity cytochrome C (cycM)    RP253
relation encoded by
type nucleic acid sequence
['cytochrome C (cycM)    RP253', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?i WHERE { resource:cytochrome_C_(cycM)____RP253 property:encoded_by ?i . ?i rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23381008
P688
Q181394
USER
Which nutrient is encoded by that nucleic acid sequence ?
(Q23381008,P688,c(Q181394))
action filter_type
action find
entity Q23381008
relation P688
type Q181394
['Q23381008', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?b WHERE { resource:Q23381008 property:P688 ?b . ?b rdf:type ontology:Q181394 }
cytochrome C (cycM)    RP253
action filter_type
action find
entity cytochrome C (cycM)    RP253
relation encodes
type nutrient
['cytochrome C (cycM)    RP253', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?b WHERE { resource:cytochrome_C_(cycM)____RP253 property:encodes ?b . ?b rdf:type ontology:nutrient }
[]
nutrient
Q23448735
SYSTEM
cytochrome C (cycM)    RP253
Q23448735
(Q23381008,P688,c(Q181394))
action filter_type
action find
entity Q23381008
relation P688
type Q181394
The cytochrome C (cycM) RP253 is encoded by that nucleic acid sequence
['Q23381008', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?b WHERE { resource:Q23381008 property:P688 ?b . ?b rdf:type ontology:Q181394 }
cytochrome C (cycM)    RP253
The cytochrome C (cycM) RP253 is encoded by that nucleic acid sequence
cytochrome C (cycM)    RP253
action filter_type
action find
entity cytochrome C (cycM)    RP253
relation encodes
type nutrient
['cytochrome C (cycM)    RP253', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?b WHERE { resource:cytochrome_C_(cycM)____RP253 property:encodes ?b . ?b rdf:type ontology:nutrient }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q23128111
Q181394
USER
And what about 23S rRNA pseudouridine(1911/1915/1917) synthase    KPHS_39870?
(Q23128111,P688,c(Q181394))
action filter_type
action find
entity Q23128111
relation P688
type Q181394
['Q23128111', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?r WHERE { ?r rdf:type ontology:Q181394 . resource:Q23128111 property:P688 ?r }
23S rRNA pseudouridine(1911/1915/1917) synthase    KPHS_39870
action filter_type
action find
entity 23S rRNA pseudouridine(1911/1915/1917) synthase    KPHS_39870
relation encodes
type nutrient
['23S rRNA pseudouridine(1911/1915/1917) synthase    KPHS_39870', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?r WHERE { ?r rdf:type ontology:nutrient . resource:23S_rRNA_pseudouridine(1911/1915/1917)_synthase____KPHS_39870 property:encodes ?r }
[]
nutrient
Q24270249
SYSTEM
23S rRNA pseudouridine(1911/1915/1917) synthase    KPHS_39870
Q24270249
(Q23128111,P688,c(Q181394))
action filter_type
action find
entity Q23128111
relation P688
type Q181394
[ANSWER]
['Q23128111', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?r WHERE { ?r rdf:type ontology:Q181394 . resource:Q23128111 property:P688 ?r }
23S rRNA pseudouridine(1911/1915/1917) synthase    KPHS_39870
23S rRNA pseudouridine(1911/1915/1917) synthase    KPHS_39870
action filter_type
action find
entity 23S rRNA pseudouridine(1911/1915/1917) synthase    KPHS_39870
relation encodes
type nutrient
['23S rRNA pseudouridine(1911/1915/1917) synthase    KPHS_39870', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?r WHERE { ?r rdf:type ontology:nutrient . resource:23S_rRNA_pseudouridine(1911/1915/1917)_synthase____KPHS_39870 property:encodes ?r }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q24270249 Q23128111
P702
Q863908
USER
Is 23S rRNA pseudouridine(1911/1915/1917) synthase    KPHS_39870 the gene that encodes 23S rRNA pseudouridine(1911/1915/1917) synthase    KPHS_39870 ?
(Q24270249,P702,Q23128111)
action is_in
entity Q23128111
action find
entity Q24270249
relation P702
['Q24270249', 'P702', 'Q23128111']
ASK WHERE { resource:Q24270249 property:P702 resource:Q23128111 }
23S rRNA pseudouridine(1911/1915/1917) synthase    KPHS_39870 23S rRNA pseudouridine(1911/1915/1917) synthase    KPHS_39870
action is_in
entity 23S rRNA pseudouridine(1911/1915/1917) synthase    KPHS_39870
action find
entity 23S rRNA pseudouridine(1911/1915/1917) synthase    KPHS_39870
relation encoded by
['23S rRNA pseudouridine(1911/1915/1917) synthase    KPHS_39870', 'encoded by', '23S rRNA pseudouridine(1911/1915/1917) synthase    KPHS_39870']
ASK WHERE { resource:23S_rRNA_pseudouridine(1911/1915/1917)_synthase____KPHS_39870 property:encoded_by resource:23S_rRNA_pseudouridine(1911/1915/1917)_synthase____KPHS_39870 }
[]
nucleic acid sequence
SYSTEM
YES
(Q24270249,P702,Q23128111)
action is_in
entity Q23128111
action find
entity Q24270249
relation P702
[ANSWER]
['Q24270249', 'P702', 'Q23128111']
ASK WHERE { resource:Q24270249 property:P702 resource:Q23128111 }
Yes
action is_in
entity 23S rRNA pseudouridine(1911/1915/1917) synthase    KPHS_39870
action find
entity 23S rRNA pseudouridine(1911/1915/1917) synthase    KPHS_39870
relation encoded by
['23S rRNA pseudouridine(1911/1915/1917) synthase    KPHS_39870', 'encoded by', '23S rRNA pseudouridine(1911/1915/1917) synthase    KPHS_39870']
ASK WHERE { resource:23S_rRNA_pseudouridine(1911/1915/1917)_synthase____KPHS_39870 property:encoded_by resource:23S_rRNA_pseudouridine(1911/1915/1917)_synthase____KPHS_39870 }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q23448735 Q29548
P681
Q5058355
USER
Is plasma membrane the cell component of cytochrome C (cycM)    RP253 ?
(Q23448735,P681,Q29548)
action is_in
entity Q29548
action find
entity Q23448735
relation P681
['Q23448735', 'P681', 'Q29548']
ASK WHERE { resource:Q23448735 property:P681 resource:Q29548 }
cytochrome C (cycM)    RP253 plasma membrane
action is_in
entity plasma membrane
action find
entity cytochrome C (cycM)    RP253
relation cell component
['cytochrome C (cycM)    RP253', 'cell component', 'plasma membrane']
ASK WHERE { resource:cytochrome_C_(cycM)____RP253 property:cell_component resource:plasma_membrane }
[]
cellular component
SYSTEM
YES
(Q23448735,P681,Q29548)
action is_in
entity Q29548
action find
entity Q23448735
relation P681
[ANSWER]
['Q23448735', 'P681', 'Q29548']
ASK WHERE { resource:Q23448735 property:P681 resource:Q29548 }
Yes
action is_in
entity plasma membrane
action find
entity cytochrome C (cycM)    RP253
relation cell component
['cytochrome C (cycM)    RP253', 'cell component', 'plasma membrane']
ASK WHERE { resource:cytochrome_C_(cycM)____RP253 property:cell_component resource:plasma_membrane }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23370522 Q24270249
P703
Q631147
USER
Which infraspecific names are 23S rRNA pseudouridine(1911/1915/1917) synthase    KPHS_39870 or arsenate reductase    BP1306 a part of ?
OR((Q24270249,P703,c(Q631147)), (Q23370522,P703,c(Q631147)))
action filter_type
action union
action find
entity Q24270249
relation P703
action find
entity Q23370522
relation P703
type Q631147
{'OR': [['Q24270249', 'P703', {'concept': 'Q631147'}], ['Q23370522', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?x WHERE { { VALUES ( ?w ) { ( resource:Q24270249 ) ( resource:Q23370522 ) } . ?w property:P703 ?x } . ?x rdf:type ontology:Q631147 }
arsenate reductase    BP1306 23S rRNA pseudouridine(1911/1915/1917) synthase    KPHS_39870
action filter_type
action union
action find
entity 23S rRNA pseudouridine(1911/1915/1917) synthase    KPHS_39870
relation found in taxon
action find
entity arsenate reductase    BP1306
relation found in taxon
type infraspecific name
{'OR': [['23S rRNA pseudouridine(1911/1915/1917) synthase    KPHS_39870', 'found in taxon', {'concept': 'infraspecific name'}], ['arsenate reductase    BP1306', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?x WHERE { { VALUES ( ?w ) { ( resource:23S_rRNA_pseudouridine(1911/1915/1917)_synthase____KPHS_39870 ) ( resource:arsenate_reductase____BP1306 ) } . ?w property:found_in_taxon ?x } . ?x rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102939 Q21102925
SYSTEM
Klebsiella pneumoniae subsp. pneumoniae HS11286, Bordetella pertussis Tohama I
Q21102939 Q21102925
OR((Q24270249,P703,c(Q631147)), (Q23370522,P703,c(Q631147)))
action filter_type
action union
action find
entity Q24270249
relation P703
action find
entity Q23370522
relation P703
type Q631147
[ANSWERS] are 23S rRNA pseudouridine(1911/1915/1917) synthase KPHS_39870 or arsenate reductase BP1306 a part of
{'OR': [['Q24270249', 'P703', {'concept': 'Q631147'}], ['Q23370522', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?x WHERE { { VALUES ( ?w ) { ( resource:Q24270249 ) ( resource:Q23370522 ) } . ?w property:P703 ?x } . ?x rdf:type ontology:Q631147 }
Klebsiella pneumoniae subsp. pneumoniae HS11286 Bordetella pertussis Tohama I
Klebsiella pneumoniae subsp. pneumoniae HS11286 and Bordetella pertussis Tohama I are 23S rRNA pseudouridine(1911/1915/1917) synthase KPHS_39870 or arsenate reductase BP1306 a part of
Klebsiella pneumoniae subsp. pneumoniae HS11286 Bordetella pertussis Tohama I
action filter_type
action union
action find
entity 23S rRNA pseudouridine(1911/1915/1917) synthase    KPHS_39870
relation found in taxon
action find
entity arsenate reductase    BP1306
relation found in taxon
type infraspecific name
{'OR': [['23S rRNA pseudouridine(1911/1915/1917) synthase    KPHS_39870', 'found in taxon', {'concept': 'infraspecific name'}], ['arsenate reductase    BP1306', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?x WHERE { { VALUES ( ?w ) { ( resource:23S_rRNA_pseudouridine(1911/1915/1917)_synthase____KPHS_39870 ) ( resource:arsenate_reductase____BP1306 ) } . ?w property:found_in_taxon ?x } . ?x rdf:type ontology:infraspecific_name }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type
Q23448735
P688
Q863908
USER
How many nucleic acid sequences encodes cytochrome C (cycM)    RP253 ?
(c(Q863908),P688,Q23448735)
action count
action filter_type
action find_reverse
entity Q23448735
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q23448735']
SELECT DISTINCT ( COUNT ( ?x ) AS ?m ) WHERE { ?x property:P688 resource:Q23448735 . ?x rdf:type ontology:Q863908 }
cytochrome C (cycM)    RP253
action count
action filter_type
action find_reverse
entity cytochrome C (cycM)    RP253
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'cytochrome C (cycM)    RP253']
SELECT DISTINCT ( COUNT ( ?x ) AS ?m ) WHERE { ?x property:encodes resource:cytochrome_C_(cycM)____RP253 . ?x rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
SYSTEM
1
Q23381008
(c(Q863908),P688,Q23448735)
action count
action filter_type
action find_reverse
entity Q23448735
relation P688
type Q863908
[ANSWER]
[{'concept': 'Q863908'}, 'P688', 'Q23448735']
SELECT DISTINCT ( COUNT ( ?x ) AS ?m ) WHERE { ?x property:P688 resource:Q23448735 . ?x rdf:type ontology:Q863908 }
cytochrome C (cycM)    RP253
1
action count
action filter_type
action find_reverse
entity cytochrome C (cycM)    RP253
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'cytochrome C (cycM)    RP253']
SELECT DISTINCT ( COUNT ( ?x ) AS ?m ) WHERE { ?x property:encodes resource:cytochrome_C_(cycM)____RP253 . ?x rdf:type ontology:nucleic_acid_sequence }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type
Q23448735
P681
Q5058355
USER
How many cellular components are the cell components of cytochrome C (cycM)    RP253 ?
(Q23448735,P681,c(Q5058355))
action count
action filter_type
action find
entity Q23448735
relation P681
type Q5058355
['Q23448735', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ( COUNT ( ?s ) AS ?w ) WHERE { ?s rdf:type ontology:Q5058355 . resource:Q23448735 property:P681 ?s }
cytochrome C (cycM)    RP253
action count
action filter_type
action find
entity cytochrome C (cycM)    RP253
relation cell component
type cellular component
['cytochrome C (cycM)    RP253', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ( COUNT ( ?s ) AS ?w ) WHERE { ?s rdf:type ontology:cellular_component . resource:cytochrome_C_(cycM)____RP253 property:cell_component ?s }
[]
cellular component
SYSTEM
1
Q29548
(Q23448735,P681,c(Q5058355))
action count
action filter_type
action find
entity Q23448735
relation P681
type Q5058355
[ANSWER]
['Q23448735', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ( COUNT ( ?s ) AS ?w ) WHERE { ?s rdf:type ontology:Q5058355 . resource:Q23448735 property:P681 ?s }
plasma membrane
1
action count
action filter_type
action find
entity cytochrome C (cycM)    RP253
relation cell component
type cellular component
['cytochrome C (cycM)    RP253', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ( COUNT ( ?s ) AS ?w ) WHERE { ?s rdf:type ontology:cellular_component . resource:cytochrome_C_(cycM)____RP253 property:cell_component ?s }
[]
Quantitative Reasoning (Count) (All)
Incomplete count-based ques
Q15996558
Q5058355
USER
And what about Aprataxin?
(Q15996558,P681,c(Q5058355))
action count
action filter_type
action find
entity Q15996558
relation P681
type Q5058355
['Q15996558', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ( COUNT ( ?v ) AS ?a ) WHERE { resource:Q15996558 property:P681 ?v . ?v rdf:type ontology:Q5058355 }
Aprataxin
action count
action filter_type
action find
entity Aprataxin
relation cell component
type cellular component
['Aprataxin', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ( COUNT ( ?v ) AS ?a ) WHERE { resource:Aprataxin property:cell_component ?v . ?v rdf:type ontology:cellular_component }
[]
cellular component
SYSTEM
1
(Q15996558,P681,c(Q5058355))
action count
action filter_type
action find
entity Q15996558
relation P681
type Q5058355
[ANSWER]
['Q15996558', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ( COUNT ( ?v ) AS ?a ) WHERE { resource:Q15996558 property:P681 ?v . ?v rdf:type ontology:Q5058355 }
1
action count
action filter_type
action find
entity Aprataxin
relation cell component
type cellular component
['Aprataxin', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ( COUNT ( ?v ) AS ?a ) WHERE { resource:Aprataxin property:cell_component ?v . ?v rdf:type ontology:cellular_component }
[]