Simple Question (Direct)
Simple Question
Q23499512
P680
Q44424
USER
Which the chemical bonds that represents the molecular function of dnaJ protein    EF1310 ?
(Q23499512,P680,c(Q44424))
action filter_type
action find
entity Q23499512
relation P680
type Q44424
['Q23499512', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?s WHERE { resource:Q23499512 property:P680 ?s . ?s rdf:type ontology:Q44424 }
dnaJ protein    EF1310
action filter_type
action find
entity dnaJ protein    EF1310
relation molecular function
type chemical bond
['dnaJ protein    EF1310', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?s WHERE { resource:dnaJ_protein____EF1310 property:molecular_function ?s . ?s rdf:type ontology:chemical_bond }
[]
chemical bond
Q14633865 Q13667380
SYSTEM
zinc ion binding, metal ion binding
Q14633865 Q13667380
(Q23499512,P680,c(Q44424))
action filter_type
action find
entity Q23499512
relation P680
type Q44424
Represents The [ANSWERS]
['Q23499512', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?s WHERE { resource:Q23499512 property:P680 ?s . ?s rdf:type ontology:Q44424 }
zinc ion binding metal ion binding
Represents The zinc ion binding and metal ion binding
zinc ion binding metal ion binding
action filter_type
action find
entity dnaJ protein    EF1310
relation molecular function
type chemical bond
['dnaJ protein    EF1310', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?s WHERE { resource:dnaJ_protein____EF1310 property:molecular_function ?s . ?s rdf:type ontology:chemical_bond }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23499512
P688
Q863908
USER
Which nucleic acid sequence encodes dnaJ protein    EF1310 ?
(c(Q863908),P688,Q23499512)
action filter_type
action find_reverse
entity Q23499512
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q23499512']
SELECT DISTINCT ?u WHERE { ?u property:P688 resource:Q23499512 . ?u rdf:type ontology:Q863908 }
dnaJ protein    EF1310
action filter_type
action find_reverse
entity dnaJ protein    EF1310
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'dnaJ protein    EF1310']
SELECT DISTINCT ?u WHERE { ?u property:encodes resource:dnaJ_protein____EF1310 . ?u rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23172515
SYSTEM
dnaJ protein    EF1310
Q23172515
(c(Q863908),P688,Q23499512)
action filter_type
action find_reverse
entity Q23499512
relation P688
type Q863908
Protein dnaJ protein EF1310 encodes dnaJ protein EF1310
[{'concept': 'Q863908'}, 'P688', 'Q23499512']
SELECT DISTINCT ?u WHERE { ?u property:P688 resource:Q23499512 . ?u rdf:type ontology:Q863908 }
dnaJ protein    EF1310
Protein dnaJ protein EF1310 encodes dnaJ protein EF1310
dnaJ protein    EF1310
action filter_type
action find_reverse
entity dnaJ protein    EF1310
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'dnaJ protein    EF1310']
SELECT DISTINCT ?u WHERE { ?u property:encodes resource:dnaJ_protein____EF1310 . ?u rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23172515
P702
Q181394
USER
What is the gene that is encoded by that nucleic acid sequence ?
(c(Q181394),P702,Q23172515)
action filter_type
action find_reverse
entity Q23172515
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q23172515']
SELECT DISTINCT ?f WHERE { ?f property:P702 resource:Q23172515 . ?f rdf:type ontology:Q181394 }
dnaJ protein    EF1310
action filter_type
action find_reverse
entity dnaJ protein    EF1310
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'dnaJ protein    EF1310']
SELECT DISTINCT ?f WHERE { ?f property:encoded_by resource:dnaJ_protein____EF1310 . ?f rdf:type ontology:nutrient }
[]
nutrient
Q23499512
SYSTEM
dnaJ protein    EF1310
Q23499512
(c(Q181394),P702,Q23172515)
action filter_type
action find_reverse
entity Q23172515
relation P702
type Q181394
The gene that is encoded by that nucleic acid sequence is dnaJ protein EF1310
[{'concept': 'Q181394'}, 'P702', 'Q23172515']
SELECT DISTINCT ?f WHERE { ?f property:P702 resource:Q23172515 . ?f rdf:type ontology:Q181394 }
dnaJ protein    EF1310
The gene that is encoded by that nucleic acid sequence is dnaJ protein EF1310
dnaJ protein    EF1310
action filter_type
action find_reverse
entity dnaJ protein    EF1310
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'dnaJ protein    EF1310']
SELECT DISTINCT ?f WHERE { ?f property:encoded_by resource:dnaJ_protein____EF1310 . ?f rdf:type ontology:nutrient }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type
Q23172515
P688
Q181394
USER
How many nutrients are encoded by dnaJ protein    EF1310 ?
(Q23172515,P688,c(Q181394))
action count
action filter_type
action find
entity Q23172515
relation P688
type Q181394
['Q23172515', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?q ) AS ?t ) WHERE { resource:Q23172515 property:P688 ?q . ?q rdf:type ontology:Q181394 }
dnaJ protein    EF1310
action count
action filter_type
action find
entity dnaJ protein    EF1310
relation encodes
type nutrient
['dnaJ protein    EF1310', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?q ) AS ?t ) WHERE { resource:dnaJ_protein____EF1310 property:encodes ?q . ?q rdf:type ontology:nutrient }
[]
nutrient
SYSTEM
1
Q23499512
(Q23172515,P688,c(Q181394))
action count
action filter_type
action find
entity Q23172515
relation P688
type Q181394
[ANSWER]
['Q23172515', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?q ) AS ?t ) WHERE { resource:Q23172515 property:P688 ?q . ?q rdf:type ontology:Q181394 }
dnaJ protein    EF1310
1
action count
action filter_type
action find
entity dnaJ protein    EF1310
relation encodes
type nutrient
['dnaJ protein    EF1310', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?q ) AS ?t ) WHERE { resource:dnaJ_protein____EF1310 property:encodes ?q . ?q rdf:type ontology:nutrient }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23172515
P703
Q631147
USER
Which taxon is that nucleic acid sequence a part of ?
action filter_type
action find
entity Q23172515
relation P703
type Q631147
SELECT DISTINCT ?s WHERE { resource:Q23172515 property:P703 ?s . ?s rdf:type ontology:Q631147 }
dnaJ protein    EF1310
action filter_type
action find
entity dnaJ protein    EF1310
relation found in taxon
type infraspecific name
SELECT DISTINCT ?s WHERE { resource:dnaJ_protein____EF1310 property:found_in_taxon ?s . ?s rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102965
SYSTEM
Enterococcus faecalis V583
Q21102965
action filter_type
action find
entity Q23172515
relation P703
type Q631147
[ANSWER] is that nucleic acid sequence a part of
SELECT DISTINCT ?s WHERE { resource:Q23172515 property:P703 ?s . ?s rdf:type ontology:Q631147 }
Enterococcus faecalis V583
Enterococcus faecalis V583 is that nucleic acid sequence a part of
Enterococcus faecalis V583
action filter_type
action find
entity dnaJ protein    EF1310
relation found in taxon
type infraspecific name
SELECT DISTINCT ?s WHERE { resource:dnaJ_protein____EF1310 property:found_in_taxon ?s . ?s rdf:type ontology:infraspecific_name }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Mult. entity type
Q23499512 Q407166
P688
Q863908
USER
How many nucleic acid sequences encode dnaJ protein    EF1310 or Somatostatin ?
(c(Q863908),P688,Q23499512) (c(Q863908),P688,Q407166)
action count
action union
action filter_type
action find_reverse
entity Q23499512
relation P688
type Q863908
action filter_type
action find_reverse
entity Q407166
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q23499512'] [{'concept': 'Q863908'}, 'P688', 'Q407166']
SELECT DISTINCT ( COUNT ( ?y ) AS ?d ) WHERE { { ?y property:P688 resource:Q407166 . ?y rdf:type ontology:Q863908 } UNION { ?y property:P688 resource:Q23499512 . ?y rdf:type ontology:Q863908 } }
dnaJ protein    EF1310 Somatostatin
action count
action union
action filter_type
action find_reverse
entity dnaJ protein    EF1310
relation encodes
type nucleic acid sequence
action filter_type
action find_reverse
entity Somatostatin
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'dnaJ protein    EF1310'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'Somatostatin']
SELECT DISTINCT ( COUNT ( ?y ) AS ?d ) WHERE { { ?y property:encodes resource:Somatostatin . ?y rdf:type ontology:nucleic_acid_sequence } UNION { ?y property:encodes resource:dnaJ_protein____EF1310 . ?y rdf:type ontology:nucleic_acid_sequence } }
[]
nucleic acid sequence
SYSTEM
2
Q23172515 Q14860836
(c(Q863908),P688,Q23499512) (c(Q863908),P688,Q407166)
action count
action union
action filter_type
action find_reverse
entity Q23499512
relation P688
type Q863908
action filter_type
action find_reverse
entity Q407166
relation P688
type Q863908
[ANSWER]
[{'concept': 'Q863908'}, 'P688', 'Q23499512'] [{'concept': 'Q863908'}, 'P688', 'Q407166']
SELECT DISTINCT ( COUNT ( ?y ) AS ?d ) WHERE { { ?y property:P688 resource:Q407166 . ?y rdf:type ontology:Q863908 } UNION { ?y property:P688 resource:Q23499512 . ?y rdf:type ontology:Q863908 } }
dnaJ protein    EF1310 SST
2
action count
action union
action filter_type
action find_reverse
entity dnaJ protein    EF1310
relation encodes
type nucleic acid sequence
action filter_type
action find_reverse
entity Somatostatin
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'dnaJ protein    EF1310'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'Somatostatin']
SELECT DISTINCT ( COUNT ( ?y ) AS ?d ) WHERE { { ?y property:encodes resource:Somatostatin . ?y rdf:type ontology:nucleic_acid_sequence } UNION { ?y property:encodes resource:dnaJ_protein____EF1310 . ?y rdf:type ontology:nucleic_acid_sequence } }
[]
Simple Question (Ellipsis)
Incomplete|object parent is changed, subject and predicate remain same
Q23499512
Q2996394
USER
And which biological process?
(Q23499512,P682,c(Q2996394))
action filter_type
action find
entity Q23499512
relation P682
type Q2996394
['Q23499512', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?e WHERE { resource:Q23499512 property:P682 ?e . ?e rdf:type ontology:Q2996394 }
dnaJ protein    EF1310
action filter_type
action find
entity dnaJ protein    EF1310
relation biological process
type biological process
['dnaJ protein    EF1310', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?e WHERE { resource:dnaJ_protein____EF1310 property:biological_process ?e . ?e rdf:type ontology:biological_process }
[]
biological process
Q847556
SYSTEM
protein folding
Q847556
(Q23499512,P682,c(Q2996394))
action filter_type
action find
entity Q23499512
relation P682
type Q2996394
[ANSWER]
['Q23499512', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?e WHERE { resource:Q23499512 property:P682 ?e . ?e rdf:type ontology:Q2996394 }
protein folding
protein folding
action filter_type
action find
entity dnaJ protein    EF1310
relation biological process
type biological process
['dnaJ protein    EF1310', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?e WHERE { resource:dnaJ_protein____EF1310 property:biological_process ?e . ?e rdf:type ontology:biological_process }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23086831 Q23172515
P688
Q181394
USER
Which nutrients do dnaJ protein    EF1310 or inner membrane protein    b1840 encode ?
OR((Q23172515,P688,c(Q181394)), (Q23086831,P688,c(Q181394)))
action filter_type
action union
action find
entity Q23172515
relation P688
action find
entity Q23086831
relation P688
type Q181394
{'OR': [['Q23172515', 'P688', {'concept': 'Q181394'}], ['Q23086831', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?a WHERE { { { resource:Q23086831 property:P688 ?a } UNION { resource:Q23172515 property:P688 ?a } } . ?a rdf:type ontology:Q181394 }
inner membrane protein    b1840 dnaJ protein    EF1310
action filter_type
action union
action find
entity dnaJ protein    EF1310
relation encodes
action find
entity inner membrane protein    b1840
relation encodes
type nutrient
{'OR': [['dnaJ protein    EF1310', 'encodes', {'concept': 'nutrient'}], ['inner membrane protein    b1840', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?a WHERE { { { resource:inner_membrane_protein____b1840 property:encodes ?a } UNION { resource:dnaJ_protein____EF1310 property:encodes ?a } } . ?a rdf:type ontology:nutrient }
[]
nutrient
Q24138648 Q23499512
SYSTEM
inner membrane protein    b1840, dnaJ protein    EF1310
Q24138648 Q23499512
OR((Q23172515,P688,c(Q181394)), (Q23086831,P688,c(Q181394)))
action filter_type
action union
action find
entity Q23172515
relation P688
action find
entity Q23086831
relation P688
type Q181394
[ANSWERS]
{'OR': [['Q23172515', 'P688', {'concept': 'Q181394'}], ['Q23086831', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?a WHERE { { { resource:Q23086831 property:P688 ?a } UNION { resource:Q23172515 property:P688 ?a } } . ?a rdf:type ontology:Q181394 }
inner membrane protein    b1840 dnaJ protein    EF1310
DnaJ protein EF 1310 or inner membrane protein b1840 encode for inner membrane protein b1840 and dnaJ protein EF1310
inner membrane protein    b1840 dnaJ protein    EF1310
action filter_type
action union
action find
entity dnaJ protein    EF1310
relation encodes
action find
entity inner membrane protein    b1840
relation encodes
type nutrient
{'OR': [['dnaJ protein    EF1310', 'encodes', {'concept': 'nutrient'}], ['inner membrane protein    b1840', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?a WHERE { { { resource:inner_membrane_protein____b1840 property:encodes ?a } UNION { resource:dnaJ_protein____EF1310 property:encodes ?a } } . ?a rdf:type ontology:nutrient }
[]
Quantitative Reasoning (All)
Quantitative|Atleast/ Atmost/ Approx. the same/Equal|Single entity type
P682
Q1057 Q181394
USER
Which metabolic processes are around 3953 nutrients involved in ?
(c(Q181394),P682,c(Q1057))
action approx
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
value 3953
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?s WHERE { { SELECT DISTINCT ?s ( COUNT ( ?c ) AS ?t ) WHERE { ?c property:P682 ?s . ?c rdf:type ontology:Q181394 . ?s rdf:type ontology:Q1057 } GROUP BY ?s } . FILTER ( ?t = 3953 ) }
action approx
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
value 3953
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?s WHERE { { SELECT DISTINCT ?s ( COUNT ( ?c ) AS ?t ) WHERE { ?c property:biological_process ?s . ?c rdf:type ontology:nutrient . ?s rdf:type ontology:metabolic_process } GROUP BY ?s } . FILTER ( ?t = 3953 ) }
[]
metabolic process nutrient
Q14762260 Q14349667
SYSTEM
carbohydrate metabolic process, lipid metabolic process
Q14762260 Q14349667
(c(Q181394),P682,c(Q1057))
action approx
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
value 3953
[ANSWERS] are around 3953 nutrients involved in
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?s WHERE { { SELECT DISTINCT ?s ( COUNT ( ?c ) AS ?t ) WHERE { ?c property:P682 ?s . ?c rdf:type ontology:Q181394 . ?s rdf:type ontology:Q1057 } GROUP BY ?s } . FILTER ( ?t = 3953 ) }
carbohydrate metabolic process lipid metabolic process
Carbohydrate metabolic process and lipid metabolic process are around 3953 nutrients involved in
carbohydrate metabolic process lipid metabolic process
action approx
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
value 3953
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?s WHERE { { SELECT DISTINCT ?s ( COUNT ( ?c ) AS ?t ) WHERE { ?c property:biological_process ?s . ?c rdf:type ontology:nutrient . ?s rdf:type ontology:metabolic_process } GROUP BY ?s } . FILTER ( ?t = 3953 ) }
[]
Verification (Boolean) (All)
Verification|one entity, multiple entities (as object) referred indirectly
Q23481686
P682
Q181394
USER
Are diacylglycerol glucosyltransferase    SE0717 involved in those metabolic processes ?
(Q23481686,P682,Q14762260) (Q23481686,P682,Q14349667)
action is_in
entity prev_answer
action find
entity Q23481686
relation P682
['Q23481686', 'P682', 'Q14762260'] ['Q23481686', 'P682', 'Q14349667']
ASK WHERE { VALUES ( ?u ) { ( resource:Q14762260 ) ( resource:Q14349667 ) } . resource:Q23481686 property:P682 ?u }
diacylglycerol glucosyltransferase    SE0717
action is_in
entity prev_answer
action find
entity diacylglycerol glucosyltransferase    SE0717
relation biological process
['diacylglycerol glucosyltransferase    SE0717', 'biological process', 'carbohydrate metabolic process'] ['diacylglycerol glucosyltransferase    SE0717', 'biological process', 'lipid metabolic process']
ASK WHERE { VALUES ( ?u ) { ( resource:carbohydrate_metabolic_process ) ( resource:lipid_metabolic_process ) } . resource:diacylglycerol_glucosyltransferase____SE0717 property:biological_process ?u }
[]
nutrient
SYSTEM
YES
(Q23481686,P682,Q14762260) (Q23481686,P682,Q14349667)
action is_in
entity prev_answer
action find
entity Q23481686
relation P682
[ANSWER]
['Q23481686', 'P682', 'Q14762260'] ['Q23481686', 'P682', 'Q14349667']
ASK WHERE { VALUES ( ?u ) { ( resource:Q14762260 ) ( resource:Q14349667 ) } . resource:Q23481686 property:P682 ?u }
Yes
action is_in
entity prev_answer
action find
entity diacylglycerol glucosyltransferase    SE0717
relation biological process
['diacylglycerol glucosyltransferase    SE0717', 'biological process', 'carbohydrate metabolic process'] ['diacylglycerol glucosyltransferase    SE0717', 'biological process', 'lipid metabolic process']
ASK WHERE { VALUES ( ?u ) { ( resource:carbohydrate_metabolic_process ) ( resource:lipid_metabolic_process ) } . resource:diacylglycerol_glucosyltransferase____SE0717 property:biological_process ?u }
[]