Simple Question (Direct)
Simple Question
Q23492745
P702
Q863908
USER
What encodes formamidopyrimidine-DNA glycosylase    SAG1489 ?
(Q23492745,P702,c(Q863908))
action filter_type
action find
entity Q23492745
relation P702
type Q863908
['Q23492745', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?y WHERE { resource:Q23492745 property:P702 ?y . ?y rdf:type ontology:Q863908 }
formamidopyrimidine-DNA glycosylase    SAG1489
action filter_type
action find
entity formamidopyrimidine-DNA glycosylase    SAG1489
relation encoded by
type nucleic acid sequence
['formamidopyrimidine-DNA glycosylase    SAG1489', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?y WHERE { resource:formamidopyrimidine-DNA_glycosylase____SAG1489 property:encoded_by ?y . ?y rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23222373
SYSTEM
formamidopyrimidine-DNA glycosylase    SAG1489
Q23222373
(Q23492745,P702,c(Q863908))
action filter_type
action find
entity Q23492745
relation P702
type Q863908
Formamidopyrimidine-DNA glycosylase SAG1489 encodes formamidopyrimidine-DNA glycosylase SAG1489
['Q23492745', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?y WHERE { resource:Q23492745 property:P702 ?y . ?y rdf:type ontology:Q863908 }
formamidopyrimidine-DNA glycosylase    SAG1489
Formamidopyrimidine-DNA glycosylase SAG1489 encodes formamidopyrimidine-DNA glycosylase SAG1489
formamidopyrimidine-DNA glycosylase    SAG1489
action filter_type
action find
entity formamidopyrimidine-DNA glycosylase    SAG1489
relation encoded by
type nucleic acid sequence
['formamidopyrimidine-DNA glycosylase    SAG1489', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?y WHERE { resource:formamidopyrimidine-DNA_glycosylase____SAG1489 property:encoded_by ?y . ?y rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23222373
P703
Q631147
USER
Which infraspecific name is that nucleic acid sequence found in ?
(Q23222373,P703,c(Q631147))
action filter_type
action find
entity Q23222373
relation P703
type Q631147
['Q23222373', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?z WHERE { resource:Q23222373 property:P703 ?z . ?z rdf:type ontology:Q631147 }
formamidopyrimidine-DNA glycosylase    SAG1489
action filter_type
action find
entity formamidopyrimidine-DNA glycosylase    SAG1489
relation found in taxon
type infraspecific name
['formamidopyrimidine-DNA glycosylase    SAG1489', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?z WHERE { resource:formamidopyrimidine-DNA_glycosylase____SAG1489 property:found_in_taxon ?z . ?z rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102962
SYSTEM
Streptococcus agalactiae 2603V/R
Q21102962
(Q23222373,P703,c(Q631147))
action filter_type
action find
entity Q23222373
relation P703
type Q631147
That nucleic acid sequence is found in [ANSWER]
['Q23222373', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?z WHERE { resource:Q23222373 property:P703 ?z . ?z rdf:type ontology:Q631147 }
Streptococcus agalactiae 2603V/R
That nucleic acid sequence is found in Streptococcus agalactiae 2603V/R
Streptococcus agalactiae 2603V/R
action filter_type
action find
entity formamidopyrimidine-DNA glycosylase    SAG1489
relation found in taxon
type infraspecific name
['formamidopyrimidine-DNA glycosylase    SAG1489', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?z WHERE { resource:formamidopyrimidine-DNA_glycosylase____SAG1489 property:found_in_taxon ?z . ?z rdf:type ontology:infraspecific_name }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q23490934
Q631147
USER
And also tell me about response regulator    SMU_927?
(Q23490934,P703,c(Q631147))
action filter_type
action find
entity Q23490934
relation P703
type Q631147
['Q23490934', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?w WHERE { resource:Q23490934 property:P703 ?w . ?w rdf:type ontology:Q631147 }
response regulator    SMU_927
action filter_type
action find
entity response regulator    SMU_927
relation found in taxon
type infraspecific name
['response regulator    SMU_927', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?w WHERE { resource:response_regulator____SMU_927 property:found_in_taxon ?w . ?w rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102961
SYSTEM
Streptococcus mutans UA159
Q21102961
(Q23490934,P703,c(Q631147))
action filter_type
action find
entity Q23490934
relation P703
type Q631147
[ANSWER]
['Q23490934', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?w WHERE { resource:Q23490934 property:P703 ?w . ?w rdf:type ontology:Q631147 }
Streptococcus mutans UA159
Streptococcus mutans UA159
action filter_type
action find
entity response regulator    SMU_927
relation found in taxon
type infraspecific name
['response regulator    SMU_927', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?w WHERE { resource:response_regulator____SMU_927 property:found_in_taxon ?w . ?w rdf:type ontology:infraspecific_name }
[]
Comparative Reasoning (All)
Comparative|More/Less|Single entity type|Indirect
P703
Q631147 Q863908
USER
Which infraspecific names are the taxon to which approximately the same number of nucleic acid sequences belongs to as that infraspecific name ?
(c(Q863908),P703,c(Q631147))
action approx
action find_reverse_tuple_counts
relation P703
type Q631147
type Q863908
action count
action filter_type
action find
entity Q21102961
relation P703
type Q631147
[{'concept': 'Q863908'}, 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?y WHERE { { SELECT DISTINCT ?y ( COUNT ( ?q ) AS ?d ) WHERE { ?q property:P703 ?y . ?y rdf:type ontology:Q631147 . ?q rdf:type ontology:Q863908 } GROUP BY ?y } . { SELECT DISTINCT ( COUNT ( ?z ) AS ?l ) WHERE { resource:Q21102961 property:P703 ?z . ?z rdf:type ontology:Q631147 } } . FILTER ( ?d = ?l ) }
action approx
action find_reverse_tuple_counts
relation found in taxon
type infraspecific name
type nucleic acid sequence
action count
action filter_type
action find
entity Streptococcus mutans UA159
relation found in taxon
type infraspecific name
[{'concept': 'nucleic acid sequence'}, 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?y WHERE { { SELECT DISTINCT ?y ( COUNT ( ?q ) AS ?d ) WHERE { ?q property:found_in_taxon ?y . ?y rdf:type ontology:infraspecific_name . ?q rdf:type ontology:nucleic_acid_sequence } GROUP BY ?y } . { SELECT DISTINCT ( COUNT ( ?z ) AS ?l ) WHERE { resource:Streptococcus_mutans_UA159 property:found_in_taxon ?z . ?z rdf:type ontology:infraspecific_name } } . FILTER ( ?d = ?l ) }
[]
infraspecific name nucleic acid sequence
Q21102919 Q21079559 Q21102990
SYSTEM
Legionella pneumophila subsp. pneumophila str. Philadelphia 1, Salinibacter ruber DSM 13855, Mycoplasma pneumoniae M129
Q21102990 Q21102991 Q21102992 Q21102994 Q21102999 Q21102960 Q21102919 Q21102920 Q21102965 Q21102964 Q21102949 Q21102966 Q21102961 Q21102963 Q21102962 Q21102921 Q21102922 Q21102925 Q21102974 Q21102989 Q21102985 Q21102983 Q21102982 Q21102981 Q21102980 Q21102969 Q21102968 Q21102956 Q21102957 Q21102951 Q21102978 Q21102977 Q21102975 Q21102959 Q21064832 Q21102948 Q21102979 Q21079559 Q21102967
(c(Q863908),P703,c(Q631147))
action approx
action find_reverse_tuple_counts
relation P703
type Q631147
type Q863908
action count
action filter_type
action find
entity Q21102961
relation P703
type Q631147
[ANSWERS] are the taxon to which approximately the same number of nucleic acid sequences belongs to as that infraspecific name
[{'concept': 'Q863908'}, 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?y WHERE { { SELECT DISTINCT ?y ( COUNT ( ?q ) AS ?d ) WHERE { ?q property:P703 ?y . ?y rdf:type ontology:Q631147 . ?q rdf:type ontology:Q863908 } GROUP BY ?y } . { SELECT DISTINCT ( COUNT ( ?z ) AS ?l ) WHERE { resource:Q21102961 property:P703 ?z . ?z rdf:type ontology:Q631147 } } . FILTER ( ?d = ?l ) }
Mycoplasma pneumoniae M129 Thermotoga maritima MSB8 Gardnerella vaginalis ATCC 14019 Streptococcus mitis B6 Geobacter sulfurreducens PCA Streptococcus suis BM407 Legionella pneumophila subsp. pneumophila str. Philadelphia 1 Acinetobacter pittii PHEA-2 Enterococcus faecalis V583 Streptococcus pyogenes M1 GAS Rickettsia prowazekii str. Madrid E Enterococcus faecium DO Streptococcus mutans UA159 Streptococcus pneumoniae R6 Streptococcus agalactiae 2603V/R Neisseria gonorrhoeae FA 1090 Neisseria meningitidis MC58 Bordetella pertussis Tohama I Clostridium botulinum A str. Hall Mycoplasma mycoides subsp. mycoides SC str. PG1 Mycobacterium leprae TN Corynebacterium glutamicum ATCC 13032 Bifidobacterium bifidum PRL2010 Listeria monocytogenes EGD-e Lactobacillus salivarius UCC118 Bacillus anthracis str. Sterne Bacillus anthracis str. Ames Staphylococcus aureus subsp. aureus NCTC 8325 Staphylococcus epidermidis ATCC 12228 Fusobacterium nucleatum subsp. nucleatum ATCC 25586 Lactobacillus casei ATCC 334 Lactobacillus acidophilus NCFM Clostridium botulinum A str. ATCC 3502 Deinococcus radiodurans R1 Coxiella burnetii RSA 493 Haemophilus influenzae Rd KW20 Lactobacillus plantarum WCFS1 Salinibacter ruber DSM 13855 Lactococcus lactis subsp. lactis Il1403
Legionella pneumophila subsp. pneumophila str. Philadelphia 1, Salinibacter ruber DSM 13855 and Mycoplasma pneumoniae M129 are the taxon to which approximately the same number of nucleic acid sequences belongs to as that infraspecific name
Legionella pneumophila subsp. pneumophila str. Philadelphia 1 Salinibacter ruber DSM 13855 Mycoplasma pneumoniae M129
action approx
action find_reverse_tuple_counts
relation found in taxon
type infraspecific name
type nucleic acid sequence
action count
action filter_type
action find
entity Streptococcus mutans UA159
relation found in taxon
type infraspecific name
[{'concept': 'nucleic acid sequence'}, 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?y WHERE { { SELECT DISTINCT ?y ( COUNT ( ?q ) AS ?d ) WHERE { ?q property:found_in_taxon ?y . ?y rdf:type ontology:infraspecific_name . ?q rdf:type ontology:nucleic_acid_sequence } GROUP BY ?y } . { SELECT DISTINCT ( COUNT ( ?z ) AS ?l ) WHERE { resource:Streptococcus_mutans_UA159 property:found_in_taxon ?z . ?z rdf:type ontology:infraspecific_name } } . FILTER ( ?d = ?l ) }
[]
Quantitative Reasoning (Count) (All)
Incomplete count-based ques
Q18265711
Q863908
USER
And what about Ndufv2?
(Q18265711,P684,c(Q863908))
action count
action filter_type
action find
entity Q18265711
relation P684
type Q863908
['Q18265711', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ( COUNT ( ?r ) AS ?x ) WHERE { resource:Q18265711 property:P684 ?r . ?r rdf:type ontology:Q863908 }
Ndufv2
action count
action filter_type
action find
entity Ndufv2
relation ortholog
type nucleic acid sequence
['Ndufv2', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ( COUNT ( ?r ) AS ?x ) WHERE { resource:Ndufv2 property:ortholog ?r . ?r rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
SYSTEM
1
(Q18265711,P684,c(Q863908))
action count
action filter_type
action find
entity Q18265711
relation P684
type Q863908
[ANSWER]
['Q18265711', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ( COUNT ( ?r ) AS ?x ) WHERE { resource:Q18265711 property:P684 ?r . ?r rdf:type ontology:Q863908 }
1
action count
action filter_type
action find
entity Ndufv2
relation ortholog
type nucleic acid sequence
['Ndufv2', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ( COUNT ( ?r ) AS ?x ) WHERE { resource:Ndufv2 property:ortholog ?r . ?r rdf:type ontology:nucleic_acid_sequence }
[]