Simple Question (Direct)
Simple Question
Q21125354
P702
Q863908
USER
Which nucleic acid sequence encodes Tropomodulin-1 ?
(Q21125354,P702,c(Q863908))
action filter_type
action find
entity Q21125354
relation P702
type Q863908
['Q21125354', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?q WHERE { resource:Q21125354 property:P702 ?q . ?q rdf:type ontology:Q863908 }
Tropomodulin-1
action filter_type
action find
entity Tropomodulin-1
relation encoded by
type nucleic acid sequence
['Tropomodulin-1', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?q WHERE { resource:Tropomodulin-1 property:encoded_by ?q . ?q rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18032024
SYSTEM
TMOD1
Q18032024
(Q21125354,P702,c(Q863908))
action filter_type
action find
entity Q21125354
relation P702
type Q863908
[ANSWER] encodes Tropomodulin-1
['Q21125354', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?q WHERE { resource:Q21125354 property:P702 ?q . ?q rdf:type ontology:Q863908 }
TMOD1
TMOD1 encodes Tropomodulin-1
TMOD1
action filter_type
action find
entity Tropomodulin-1
relation encoded by
type nucleic acid sequence
['Tropomodulin-1', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?q WHERE { resource:Tropomodulin-1 property:encoded_by ?q . ?q rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18032024
P684
Q863908
USER
Which nucleic acid sequence is an orthologous gene for that one ?
(Q18032024,P684,c(Q863908))
action filter_type
action find
entity Q18032024
relation P684
type Q863908
['Q18032024', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?l WHERE { resource:Q18032024 property:P684 ?l . ?l rdf:type ontology:Q863908 }
TMOD1
action filter_type
action find
entity TMOD1
relation ortholog
type nucleic acid sequence
['TMOD1', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?l WHERE { resource:TMOD1 property:ortholog ?l . ?l rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18255035
SYSTEM
Tmod1
Q18255035
(Q18032024,P684,c(Q863908))
action filter_type
action find
entity Q18032024
relation P684
type Q863908
[ANSWER] is an orthologous gene for that one
['Q18032024', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?l WHERE { resource:Q18032024 property:P684 ?l . ?l rdf:type ontology:Q863908 }
Tmod1
Tmod1 is an orthologous gene for that one
Tmod1
action filter_type
action find
entity TMOD1
relation ortholog
type nucleic acid sequence
['TMOD1', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?l WHERE { resource:TMOD1 property:ortholog ?l . ?l rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q18058939
Q863908
USER
And how about CCDC73?
(Q18058939,P684,c(Q863908))
action filter_type
action find
entity Q18058939
relation P684
type Q863908
['Q18058939', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?u WHERE { resource:Q18058939 property:P684 ?u . ?u rdf:type ontology:Q863908 }
CCDC73
action filter_type
action find
entity CCDC73
relation ortholog
type nucleic acid sequence
['CCDC73', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?u WHERE { resource:CCDC73 property:ortholog ?u . ?u rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18296325
SYSTEM
Ccdc73
Q18296325
(Q18058939,P684,c(Q863908))
action filter_type
action find
entity Q18058939
relation P684
type Q863908
[ANSWER]
['Q18058939', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?u WHERE { resource:Q18058939 property:P684 ?u . ?u rdf:type ontology:Q863908 }
Ccdc73
Ccdc73
action filter_type
action find
entity CCDC73
relation ortholog
type nucleic acid sequence
['CCDC73', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?u WHERE { resource:CCDC73 property:ortholog ?u . ?u rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|3 entities, 2 direct, 2(direct) are query entities, subject is indirect
Q18296325 Q18058939 Q23164750
P684
Q863908
USER
Does that nucleic acid sequence have CCDC73 and permease    VPA1110 as its orthologous gene ?
(Q18296325,P684,Q18058939) (Q18296325,P684,Q23164750)
action is_in
entity Q18296325
action intersection
action find_reverse
entity Q18058939
relation P684
action find_reverse
entity Q23164750
relation P684
['Q18296325', 'P684', 'Q18058939'] ['Q18296325', 'P684', 'Q23164750']
ASK WHERE { resource:Q18296325 property:P684 resource:Q18058939 . resource:Q18296325 property:P684 resource:Q23164750 }
Ccdc73 CCDC73 permease    VPA1110
action is_in
entity Ccdc73
action intersection
action find_reverse
entity CCDC73
relation ortholog
action find_reverse
entity permease    VPA1110
relation ortholog
['Ccdc73', 'ortholog', 'CCDC73'] ['Ccdc73', 'ortholog', 'permease    VPA1110']
ASK WHERE { resource:Ccdc73 property:ortholog resource:CCDC73 . resource:Ccdc73 property:ortholog resource:permease____VPA1110 }
[]
nucleic acid sequence
SYSTEM
YES and NO respectively
(Q18296325,P684,Q18058939) (Q18296325,P684,Q23164750)
action is_in
entity Q18296325
action intersection
action find_reverse
entity Q18058939
relation P684
action find_reverse
entity Q23164750
relation P684
[ANSWER]
['Q18296325', 'P684', 'Q18058939'] ['Q18296325', 'P684', 'Q23164750']
ASK WHERE { resource:Q18296325 property:P684 resource:Q18058939 . resource:Q18296325 property:P684 resource:Q23164750 }
YES and NO respectively
action is_in
entity Ccdc73
action intersection
action find_reverse
entity CCDC73
relation ortholog
action find_reverse
entity permease    VPA1110
relation ortholog
['Ccdc73', 'ortholog', 'CCDC73'] ['Ccdc73', 'ortholog', 'permease    VPA1110']
ASK WHERE { resource:Ccdc73 property:ortholog resource:CCDC73 . resource:Ccdc73 property:ortholog resource:permease____VPA1110 }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q18255035 Q21990719
P688
Q181394
USER
Is Tropomodulin-1 encoded by Tmod1 ?
(Q18255035,P688,Q21990719)
action is_in
entity Q21990719
action find
entity Q18255035
relation P688
['Q18255035', 'P688', 'Q21990719']
ASK WHERE { resource:Q18255035 property:P688 resource:Q21990719 }
Tmod1 Tropomodulin-1
action is_in
entity Tropomodulin-1
action find
entity Tmod1
relation encodes
['Tmod1', 'encodes', 'Tropomodulin-1']
ASK WHERE { resource:Tmod1 property:encodes resource:Tropomodulin-1 }
[]
nutrient
SYSTEM
YES
(Q18255035,P688,Q21990719)
action is_in
entity Q21990719
action find
entity Q18255035
relation P688
[ANSWER]
['Q18255035', 'P688', 'Q21990719']
ASK WHERE { resource:Q18255035 property:P688 resource:Q21990719 }
Yes
action is_in
entity Tropomodulin-1
action find
entity Tmod1
relation encodes
['Tmod1', 'encodes', 'Tropomodulin-1']
ASK WHERE { resource:Tmod1 property:encodes resource:Tropomodulin-1 }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q21125354 Q24777219
P681
Q15989253
USER
Is Outer membrane protein/outer membrane enzyme PagP,  beta-barrel the cell component of Tropomodulin-1 ?
(Q21125354,P681,Q24777219)
action is_in
entity Q24777219
action find
entity Q21125354
relation P681
['Q21125354', 'P681', 'Q24777219']
ASK WHERE { resource:Q21125354 property:P681 resource:Q24777219 }
Tropomodulin-1 Outer membrane protein/outer membrane enzyme PagP,  beta-barrel
action is_in
entity Outer membrane protein/outer membrane enzyme PagP,  beta-barrel
action find
entity Tropomodulin-1
relation cell component
['Tropomodulin-1', 'cell component', 'Outer membrane protein/outer membrane enzyme PagP,  beta-barrel']
ASK WHERE { resource:Tropomodulin-1 property:cell_component resource:Outer_membrane_protein/outer_membrane_enzyme_PagP,__beta-barrel }
[]
part
SYSTEM
NO
(Q21125354,P681,Q24777219)
action is_in
entity Q24777219
action find
entity Q21125354
relation P681
[ANSWER]
['Q21125354', 'P681', 'Q24777219']
ASK WHERE { resource:Q21125354 property:P681 resource:Q24777219 }
No
action is_in
entity Outer membrane protein/outer membrane enzyme PagP,  beta-barrel
action find
entity Tropomodulin-1
relation cell component
['Tropomodulin-1', 'cell component', 'Outer membrane protein/outer membrane enzyme PagP,  beta-barrel']
ASK WHERE { resource:Tropomodulin-1 property:cell_component resource:Outer_membrane_protein/outer_membrane_enzyme_PagP,__beta-barrel }
[]
Verification (Boolean) (All)
Verification|3 entities, all direct, 2 are query entities
Q18255035 Q17126483 Q21990719
P688
Q181394
USER
Does Tmod1 encode translocated actin-recruiting phosphoprotein and Tropomodulin-1 ?
(Q18255035,P688,Q17126483) (Q18255035,P688,Q21990719)
action is_in
entity Q18255035
action intersection
action find_reverse
entity Q17126483
relation P688
action find_reverse
entity Q21990719
relation P688
['Q18255035', 'P688', 'Q17126483'] ['Q18255035', 'P688', 'Q21990719']
ASK WHERE { resource:Q18255035 property:P688 resource:Q17126483 . resource:Q18255035 property:P688 resource:Q21990719 }
Tmod1 translocated actin-recruiting phosphoprotein Tropomodulin-1
action is_in
entity Tmod1
action intersection
action find_reverse
entity translocated actin-recruiting phosphoprotein
relation encodes
action find_reverse
entity Tropomodulin-1
relation encodes
['Tmod1', 'encodes', 'translocated actin-recruiting phosphoprotein'] ['Tmod1', 'encodes', 'Tropomodulin-1']
ASK WHERE { resource:Tmod1 property:encodes resource:translocated_actin-recruiting_phosphoprotein . resource:Tmod1 property:encodes resource:Tropomodulin-1 }
[]
nutrient
SYSTEM
NO and YES respectively
(Q18255035,P688,Q17126483) (Q18255035,P688,Q21990719)
action is_in
entity Q18255035
action intersection
action find_reverse
entity Q17126483
relation P688
action find_reverse
entity Q21990719
relation P688
[ANSWER]
['Q18255035', 'P688', 'Q17126483'] ['Q18255035', 'P688', 'Q21990719']
ASK WHERE { resource:Q18255035 property:P688 resource:Q17126483 . resource:Q18255035 property:P688 resource:Q21990719 }
NO and YES respectively
action is_in
entity Tmod1
action intersection
action find_reverse
entity translocated actin-recruiting phosphoprotein
relation encodes
action find_reverse
entity Tropomodulin-1
relation encodes
['Tmod1', 'encodes', 'translocated actin-recruiting phosphoprotein'] ['Tmod1', 'encodes', 'Tropomodulin-1']
ASK WHERE { resource:Tmod1 property:encodes resource:translocated_actin-recruiting_phosphoprotein . resource:Tmod1 property:encodes resource:Tropomodulin-1 }
[]