Simple Question (Direct)
Simple Question
Q21108168
P702
Q863908
USER
Which nucleic acid sequence encodes A-kinase anchor protein 5 ?
(Q21108168,P702,c(Q863908))
action filter_type
action find
entity Q21108168
relation P702
type Q863908
['Q21108168', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:Q863908 . resource:Q21108168 property:P702 ?x }
A-kinase anchor protein 5
action filter_type
action find
entity A-kinase anchor protein 5
relation encoded by
type nucleic acid sequence
['A-kinase anchor protein 5', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:nucleic_acid_sequence . resource:A-kinase_anchor_protein_5 property:encoded_by ?x }
[]
nucleic acid sequence
Q18034327
SYSTEM
AKAP5
Q18034327
(Q21108168,P702,c(Q863908))
action filter_type
action find
entity Q21108168
relation P702
type Q863908
[ANSWER] encodes A-kinase anchor protein 5
['Q21108168', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:Q863908 . resource:Q21108168 property:P702 ?x }
AKAP5
AKAP5 encodes A-kinase anchor protein 5
AKAP5
action filter_type
action find
entity A-kinase anchor protein 5
relation encoded by
type nucleic acid sequence
['A-kinase anchor protein 5', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:nucleic_acid_sequence . resource:A-kinase_anchor_protein_5 property:encoded_by ?x }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18034327
P684
Q863908
USER
Which nucleic acid sequence is an orthologous gene for that one ?
(Q18034327,P684,c(Q863908))
action filter_type
action find
entity Q18034327
relation P684
type Q863908
['Q18034327', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?e WHERE { resource:Q18034327 property:P684 ?e . ?e rdf:type ontology:Q863908 }
AKAP5
action filter_type
action find
entity AKAP5
relation ortholog
type nucleic acid sequence
['AKAP5', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?e WHERE { resource:AKAP5 property:ortholog ?e . ?e rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18298679
SYSTEM
Akap5
Q18298679
(Q18034327,P684,c(Q863908))
action filter_type
action find
entity Q18034327
relation P684
type Q863908
[ANSWER] is an orthologous gene for that one
['Q18034327', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?e WHERE { resource:Q18034327 property:P684 ?e . ?e rdf:type ontology:Q863908 }
Akap5
Akap5 is an orthologous gene for that one
Akap5
action filter_type
action find
entity AKAP5
relation ortholog
type nucleic acid sequence
['AKAP5', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?e WHERE { resource:AKAP5 property:ortholog ?e . ?e rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|3 entities, all direct, 2 are query entities
Q18298679 Q18034327 Q23138248
P684
Q863908
USER
Does Akap5 have AKAP5 and outer membrane N-deacetylase    ECs1269 as its orthologous gene ?
(Q18298679,P684,Q18034327) (Q18298679,P684,Q23138248)
action is_in
entity Q18298679
action intersection
action find_reverse
entity Q18034327
relation P684
action find_reverse
entity Q23138248
relation P684
['Q18298679', 'P684', 'Q18034327'] ['Q18298679', 'P684', 'Q23138248']
ASK WHERE { resource:Q18298679 property:P684 resource:Q18034327 . resource:Q18298679 property:P684 resource:Q23138248 }
Akap5 AKAP5 outer membrane N-deacetylase    ECs1269
action is_in
entity Akap5
action intersection
action find_reverse
entity AKAP5
relation ortholog
action find_reverse
entity outer membrane N-deacetylase    ECs1269
relation ortholog
['Akap5', 'ortholog', 'AKAP5'] ['Akap5', 'ortholog', 'outer membrane N-deacetylase    ECs1269']
ASK WHERE { resource:Akap5 property:ortholog resource:AKAP5 . resource:Akap5 property:ortholog resource:outer_membrane_N-deacetylase____ECs1269 }
[]
nucleic acid sequence
SYSTEM
YES and NO respectively
(Q18298679,P684,Q18034327) (Q18298679,P684,Q23138248)
action is_in
entity Q18298679
action intersection
action find_reverse
entity Q18034327
relation P684
action find_reverse
entity Q23138248
relation P684
[ANSWER]
['Q18298679', 'P684', 'Q18034327'] ['Q18298679', 'P684', 'Q23138248']
ASK WHERE { resource:Q18298679 property:P684 resource:Q18034327 . resource:Q18298679 property:P684 resource:Q23138248 }
YES and NO respectively
action is_in
entity Akap5
action intersection
action find_reverse
entity AKAP5
relation ortholog
action find_reverse
entity outer membrane N-deacetylase    ECs1269
relation ortholog
['Akap5', 'ortholog', 'AKAP5'] ['Akap5', 'ortholog', 'outer membrane N-deacetylase    ECs1269']
ASK WHERE { resource:Akap5 property:ortholog resource:AKAP5 . resource:Akap5 property:ortholog resource:outer_membrane_N-deacetylase____ECs1269 }
[]
Logical Reasoning (All)
Logical|Intersection|Multiple_Relation
Q83310 Q18298679
P703 P702
Q181394
USER
Which nutrients do Akap5 encode and are found in the taxon Mus musculus ?
AND((c(Q181394),P702,Q18298679), (c(Q181394),P703,Q83310))
action filter_type
action intersection
action find_reverse
entity Q18298679
relation P702
action find_reverse
entity Q83310
relation P703
type Q181394
{'AND': [[{'concept': 'Q181394'}, 'P702', 'Q18298679'], [{'concept': 'Q181394'}, 'P703', 'Q83310']]}
SELECT DISTINCT ?y WHERE { ?y property:P702 resource:Q18298679 . ?y property:P703 resource:Q83310 . ?y rdf:type ontology:Q181394 }
Mus musculus Akap5
action filter_type
action intersection
action find_reverse
entity Akap5
relation encoded by
action find_reverse
entity Mus musculus
relation found in taxon
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'encoded by', 'Akap5'], [{'concept': 'nutrient'}, 'found in taxon', 'Mus musculus']]}
SELECT DISTINCT ?y WHERE { ?y property:encoded_by resource:Akap5 . ?y property:found_in_taxon resource:Mus_musculus . ?y rdf:type ontology:nutrient }
[]
nutrient
Q21494812
SYSTEM
A-kinase anchor protein 5
Q21494812
AND((c(Q181394),P702,Q18298679), (c(Q181394),P703,Q83310))
action filter_type
action intersection
action find_reverse
entity Q18298679
relation P702
action find_reverse
entity Q83310
relation P703
type Q181394
Akap5 encode codes [ANSWER]
{'AND': [[{'concept': 'Q181394'}, 'P702', 'Q18298679'], [{'concept': 'Q181394'}, 'P703', 'Q83310']]}
SELECT DISTINCT ?y WHERE { ?y property:P702 resource:Q18298679 . ?y property:P703 resource:Q83310 . ?y rdf:type ontology:Q181394 }
A-kinase anchor protein 5
Akap5 encode codes A-kinase anchor protein 5
A-kinase anchor protein 5
action filter_type
action intersection
action find_reverse
entity Akap5
relation encoded by
action find_reverse
entity Mus musculus
relation found in taxon
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'encoded by', 'Akap5'], [{'concept': 'nutrient'}, 'found in taxon', 'Mus musculus']]}
SELECT DISTINCT ?y WHERE { ?y property:encoded_by resource:Akap5 . ?y property:found_in_taxon resource:Mus_musculus . ?y rdf:type ontology:nutrient }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type|Indirect
P702
Q863908
USER
How many nucleic acid sequences are the gene that encodes that nutrient ?
(Q21494812,P702,c(Q863908))
action count
action filter_type
action find
entity Q21494812
relation P702
type Q863908
['Q21494812', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ( COUNT ( ?w ) AS ?r ) WHERE { resource:Q21494812 property:P702 ?w . ?w rdf:type ontology:Q863908 }
action count
action filter_type
action find
entity A-kinase anchor protein 5
relation encoded by
type nucleic acid sequence
['A-kinase anchor protein 5', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ( COUNT ( ?w ) AS ?r ) WHERE { resource:A-kinase_anchor_protein_5 property:encoded_by ?w . ?w rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
SYSTEM
1
Q18298679
(Q21494812,P702,c(Q863908))
action count
action filter_type
action find
entity Q21494812
relation P702
type Q863908
[ANSWER]
['Q21494812', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ( COUNT ( ?w ) AS ?r ) WHERE { resource:Q21494812 property:P702 ?w . ?w rdf:type ontology:Q863908 }
Akap5
1
action count
action filter_type
action find
entity A-kinase anchor protein 5
relation encoded by
type nucleic acid sequence
['A-kinase anchor protein 5', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ( COUNT ( ?w ) AS ?r ) WHERE { resource:A-kinase_anchor_protein_5 property:encoded_by ?w . ?w rdf:type ontology:nucleic_acid_sequence }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q17913932 Q18298679
P684
Q863908
USER
Which nucleic acid sequences are the name of the species that have Akap5 or DECR1 as their orthologous gene ?
OR((c(Q863908),P684,Q18298679), (c(Q863908),P684,Q17913932))
action filter_type
action union
action find_reverse
entity Q18298679
relation P684
action find_reverse
entity Q17913932
relation P684
type Q863908
{'OR': [[{'concept': 'Q863908'}, 'P684', 'Q18298679'], [{'concept': 'Q863908'}, 'P684', 'Q17913932']]}
SELECT DISTINCT ?y WHERE { { ?y property:P684 ?d . VALUES ( ?d ) { ( resource:Q18298679 ) ( resource:Q17913932 ) } } . ?y rdf:type ontology:Q863908 }
DECR1 Akap5
action filter_type
action union
action find_reverse
entity Akap5
relation ortholog
action find_reverse
entity DECR1
relation ortholog
type nucleic acid sequence
{'OR': [[{'concept': 'nucleic acid sequence'}, 'ortholog', 'Akap5'], [{'concept': 'nucleic acid sequence'}, 'ortholog', 'DECR1']]}
SELECT DISTINCT ?y WHERE { { ?y property:ortholog ?d . VALUES ( ?d ) { ( resource:Akap5 ) ( resource:DECR1 ) } } . ?y rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18262549 Q18034327
SYSTEM
Decr1, AKAP5
Q18262549 Q18034327
OR((c(Q863908),P684,Q18298679), (c(Q863908),P684,Q17913932))
action filter_type
action union
action find_reverse
entity Q18298679
relation P684
action find_reverse
entity Q17913932
relation P684
type Q863908
[ANSWERS] are the name of the species that have Akap5 or DECR1 as their orthologous gene
{'OR': [[{'concept': 'Q863908'}, 'P684', 'Q18298679'], [{'concept': 'Q863908'}, 'P684', 'Q17913932']]}
SELECT DISTINCT ?y WHERE { { ?y property:P684 ?d . VALUES ( ?d ) { ( resource:Q18298679 ) ( resource:Q17913932 ) } } . ?y rdf:type ontology:Q863908 }
Decr1 AKAP5
Decr1 and AKAP5 are the name of the species that have Akap5 or DECR1 as their orthologous gene
Decr1 AKAP5
action filter_type
action union
action find_reverse
entity Akap5
relation ortholog
action find_reverse
entity DECR1
relation ortholog
type nucleic acid sequence
{'OR': [[{'concept': 'nucleic acid sequence'}, 'ortholog', 'Akap5'], [{'concept': 'nucleic acid sequence'}, 'ortholog', 'DECR1']]}
SELECT DISTINCT ?y WHERE { { ?y property:ortholog ?d . VALUES ( ?d ) { ( resource:Akap5 ) ( resource:DECR1 ) } } . ?y rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Mult. Entity
Q18262549 Q18034327
P702
Q181394
USER
What are the gene that are encoded by those nucleic acid sequences ?
(c(Q181394),P702,Q18262549) (c(Q181394),P702,Q18034327)
action filter_type
action find_reverse
entity prev_answer
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q18262549'] [{'concept': 'Q181394'}, 'P702', 'Q18034327']
SELECT DISTINCT ?h WHERE { ?h property:P702 ?z . ?h rdf:type ontology:Q181394 . VALUES ( ?z ) { ( resource:Q18262549 ) ( resource:Q18034327 ) } }
Decr1 AKAP5
action filter_type
action find_reverse
entity prev_answer
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'Decr1'] [{'concept': 'nutrient'}, 'encoded by', 'AKAP5']
SELECT DISTINCT ?h WHERE { ?h property:encoded_by ?z . ?h rdf:type ontology:nutrient . VALUES ( ?z ) { ( resource:Decr1 ) ( resource:AKAP5 ) } }
[]
nutrient
Q21495203 Q21108168 Q21140319
SYSTEM
2,4-dienoyl-CoA reductase, mitochondrial, A-kinase anchor protein 5, AKAP5 protein
Q21495203 Q21108168 Q21140319
(c(Q181394),P702,Q18262549) (c(Q181394),P702,Q18034327)
action filter_type
action find_reverse
entity prev_answer
relation P702
type Q181394
The gene that are encoded by those nucleic acid sequences are the [ANSWERS]
[{'concept': 'Q181394'}, 'P702', 'Q18262549'] [{'concept': 'Q181394'}, 'P702', 'Q18034327']
SELECT DISTINCT ?h WHERE { ?h property:P702 ?z . ?h rdf:type ontology:Q181394 . VALUES ( ?z ) { ( resource:Q18262549 ) ( resource:Q18034327 ) } }
2,4-dienoyl-CoA reductase, mitochondrial A-kinase anchor protein 5 AKAP5 protein
The gene that are encoded by those nucleic acid sequences are the 2,4-dienoyl-CoA reductase, mitochondrial, A-kinase anchor protein 5 and AKAP5 protein
2,4-dienoyl-CoA reductase, mitochondrial A-kinase anchor protein 5 AKAP5 protein
action filter_type
action find_reverse
entity prev_answer
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'Decr1'] [{'concept': 'nutrient'}, 'encoded by', 'AKAP5']
SELECT DISTINCT ?h WHERE { ?h property:encoded_by ?z . ?h rdf:type ontology:nutrient . VALUES ( ?z ) { ( resource:Decr1 ) ( resource:AKAP5 ) } }
[]