Simple Question (Direct)
Simple Question
Q22264598
P703
Q631147
USER
Which taxon does lipoyl synthase    NGO0793 belong to ?
(Q22264598,P703,c(Q631147))
action filter_type
action find
entity Q22264598
relation P703
type Q631147
['Q22264598', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?d WHERE { resource:Q22264598 property:P703 ?d . ?d rdf:type ontology:Q631147 }
lipoyl synthase    NGO0793
action filter_type
action find
entity lipoyl synthase    NGO0793
relation found in taxon
type infraspecific name
['lipoyl synthase    NGO0793', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?d WHERE { resource:lipoyl_synthase____NGO0793 property:found_in_taxon ?d . ?d rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102921
SYSTEM
Neisseria gonorrhoeae FA 1090
Q21102921
(Q22264598,P703,c(Q631147))
action filter_type
action find
entity Q22264598
relation P703
type Q631147
Lipoyl synthase NGO0793 belongs to [ANSWER]
['Q22264598', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?d WHERE { resource:Q22264598 property:P703 ?d . ?d rdf:type ontology:Q631147 }
Neisseria gonorrhoeae FA 1090
Lipoyl synthase NGO0793 belongs to Neisseria gonorrhoeae FA 1090
Neisseria gonorrhoeae FA 1090
action filter_type
action find
entity lipoyl synthase    NGO0793
relation found in taxon
type infraspecific name
['lipoyl synthase    NGO0793', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?d WHERE { resource:lipoyl_synthase____NGO0793 property:found_in_taxon ?d . ?d rdf:type ontology:infraspecific_name }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Mult. entity type|Indirect
P703
Q631147 Q863908 Q181394
USER
How many infraspecific names are more number of nucleic acid sequences and nutrients found than that infraspecific name ?
(c(Q863908)|c(Q181394),P703,c(Q631147))
action count
action greater
action union
action find_reverse_tuple_counts
relation P703
type Q631147
type Q863908
action find_reverse_tuple_counts
relation P703
type Q631147
type Q181394
action count
action filter_multi_types
action find_reverse
entity Q21102921
relation P703
type Q863908
type Q181394
[[{'concept': 'Q863908'}, {'concept': 'Q181394'}], 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ( COUNT ( ?w ) AS ?z ) WHERE { { SELECT DISTINCT ( COUNT ( ?t ) AS ?y ) ?w WHERE { ?t rdf:type ?j . VALUES ( ?j ) { ( ontology:Q181394 ) ( ontology:Q863908 ) } } GROUP BY ?w } . { SELECT DISTINCT ( COUNT ( ?b ) AS ?f ) WHERE { ?b property:P703 resource:Q21102921 . { { ?b rdf:type ontology:Q181394 } UNION { ?b rdf:type ontology:Q863908 } } } } . FILTER ( ?y > ?f ) }
action count
action greater
action union
action find_reverse_tuple_counts
relation found in taxon
type infraspecific name
type nucleic acid sequence
action find_reverse_tuple_counts
relation found in taxon
type infraspecific name
type nutrient
action count
action filter_multi_types
action find_reverse
entity Neisseria gonorrhoeae FA 1090
relation found in taxon
type nucleic acid sequence
type nutrient
[[{'concept': 'nucleic acid sequence'}, {'concept': 'nutrient'}], 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ( COUNT ( ?w ) AS ?z ) WHERE { { SELECT DISTINCT ( COUNT ( ?t ) AS ?y ) ?w WHERE { ?t rdf:type ?j . VALUES ( ?j ) { ( ontology:nutrient ) ( ontology:nucleic_acid_sequence ) } } GROUP BY ?w } . { SELECT DISTINCT ( COUNT ( ?b ) AS ?f ) WHERE { ?b property:found_in_taxon resource:Neisseria_gonorrhoeae_FA_1090 . { { ?b rdf:type ontology:nutrient } UNION { ?b rdf:type ontology:nucleic_acid_sequence } } } } . FILTER ( ?y > ?f ) }
[]
infraspecific name nucleic acid sequence nutrient
SYSTEM
68
Q21102991 Q21102993 Q21102994 Q21102995 Q21102996 Q21102997 Q21102998 Q21102999 Q21102960 Q27510868 Q21065229 Q21079489 Q21102919 Q21102943 Q21102942 Q21102941 Q21102940 Q21102947 Q21102946 Q21102920 Q21102965 Q21102964 Q21102966 Q21102961 Q21102930 Q21102963 Q21102962 Q21102987 Q21102922 Q21102925 Q21102924 Q21102927 Q21102986 Q21102928 Q21102974 Q21102918 Q21102988 Q21079490 Q21079491 Q21102984 Q21102981 Q21102973 Q21102944 Q21102954 Q21102955 Q21102956 Q21102957 Q21102950 Q21102951 Q21102953 Q21102976 Q21102977 Q23309229 Q21102975 Q21102972 Q21102959 Q21102970 Q21102971 Q21064863 Q21064832 Q21102931 Q21102937 Q21102934 Q21102979 Q21079559 Q21102938 Q21102939 Q21102967
(c(Q863908)|c(Q181394),P703,c(Q631147))
action count
action greater
action union
action find_reverse_tuple_counts
relation P703
type Q631147
type Q863908
action find_reverse_tuple_counts
relation P703
type Q631147
type Q181394
action count
action filter_multi_types
action find_reverse
entity Q21102921
relation P703
type Q863908
type Q181394
[ANSWER]
[[{'concept': 'Q863908'}, {'concept': 'Q181394'}], 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ( COUNT ( ?w ) AS ?z ) WHERE { { SELECT DISTINCT ( COUNT ( ?t ) AS ?y ) ?w WHERE { ?t rdf:type ?j . VALUES ( ?j ) { ( ontology:Q181394 ) ( ontology:Q863908 ) } } GROUP BY ?w } . { SELECT DISTINCT ( COUNT ( ?b ) AS ?f ) WHERE { ?b property:P703 resource:Q21102921 . { { ?b rdf:type ontology:Q181394 } UNION { ?b rdf:type ontology:Q863908 } } } } . FILTER ( ?y > ?f ) }
Thermotoga maritima MSB8 Burkholderia mallei ATCC 23344 Streptococcus mitis B6 Burkholderia pseudomallei K96243 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Salmonella enterica subsp. enterica serovar Typhi str. CT18 Amycolatopsis mediterranei U32 Geobacter sulfurreducens PCA Streptococcus suis BM407 Saccharomyces cerevisiae S288c Leptospira interrogans serovar Lai str. 56601 Pseudomonas putida KT2440 Legionella pneumophila subsp. pneumophila str. Philadelphia 1 Yersinia pestis CO92 Yersinia enterocolitica subsp. enterocolitica 8081 Shigella flexneri 2a str. 301 Shigella dysenteriae Sd197 Vibrio parahaemolyticus RIMD 2210633 Vibrio fischeri ES114 Acinetobacter pittii PHEA-2 Enterococcus faecalis V583 Streptococcus pyogenes M1 GAS Enterococcus faecium DO Streptococcus mutans UA159 Escherichia coli O157:H7 str. Sakai Streptococcus pneumoniae R6 Streptococcus agalactiae 2603V/R Mycobacterium tuberculosis H37Rv Neisseria meningitidis MC58 Bordetella pertussis Tohama I Bordetella bronchiseptica 253 Enterobacter aerogenes KCTC 2190 Mycobacterium smegmatis str. MC2 155 Enterobacter cloacae subsp. cloacae ATCC 13047 Clostridium botulinum A str. Hall Sinorhizobium meliloti 1021 Streptomyces coelicolor A3(2) Pseudomonas syringae pv. syringae B728a Xanthomonas campestris pv. campestris str. ATCC 33913 Mycobacterium bovis AF2122/97 Listeria monocytogenes EGD-e Clostridium acetobutylicum ATCC 824 Aeromonas hydrophila subsp. hydrophila ATCC 7966 Rhodospirillum rubrum ATCC 11170 Chloroflexus aurantiacus J-10-fl Staphylococcus aureus subsp. aureus NCTC 8325 Staphylococcus epidermidis ATCC 12228 Bacteroides fragilis YCH46 Fusobacterium nucleatum subsp. nucleatum ATCC 25586 Rhodobacter sphaeroides 2.4.1 Peptoclostridium difficile 630 Lactobacillus acidophilus NCFM Sinorhizobium fredii NGR234 Clostridium botulinum A str. ATCC 3502 Bacillus thuringiensis serovar konkukian str. 97-27 Deinococcus radiodurans R1 Bacillus cereus ATCC 14579 Bacillus subtilis subsp. subtilis str. 168 Bordetella parapertussis Bpp5 Coxiella burnetii RSA 493 Escherichia coli UMN026 Escherichia coli O104:H4 str. 2011C-3493 Escherichia coli O83:H1 str. NRG 857C Lactobacillus plantarum WCFS1 Salinibacter ruber DSM 13855 Escherichia coli str. K-12 substr. MG1655 Klebsiella pneumoniae subsp. pneumoniae HS11286 Lactococcus lactis subsp. lactis Il1403
68
action count
action greater
action union
action find_reverse_tuple_counts
relation found in taxon
type infraspecific name
type nucleic acid sequence
action find_reverse_tuple_counts
relation found in taxon
type infraspecific name
type nutrient
action count
action filter_multi_types
action find_reverse
entity Neisseria gonorrhoeae FA 1090
relation found in taxon
type nucleic acid sequence
type nutrient
[[{'concept': 'nucleic acid sequence'}, {'concept': 'nutrient'}], 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ( COUNT ( ?w ) AS ?z ) WHERE { { SELECT DISTINCT ( COUNT ( ?t ) AS ?y ) ?w WHERE { ?t rdf:type ?j . VALUES ( ?j ) { ( ontology:nutrient ) ( ontology:nucleic_acid_sequence ) } } GROUP BY ?w } . { SELECT DISTINCT ( COUNT ( ?b ) AS ?f ) WHERE { ?b property:found_in_taxon resource:Neisseria_gonorrhoeae_FA_1090 . { { ?b rdf:type ontology:nutrient } UNION { ?b rdf:type ontology:nucleic_acid_sequence } } } } . FILTER ( ?y > ?f ) }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q22264598
P688
Q863908
USER
What is the nucleic acid sequence that is encoded by lipoyl synthase    NGO0793 ?
(c(Q863908),P688,Q22264598)
action filter_type
action find_reverse
entity Q22264598
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q22264598']
SELECT DISTINCT ?w WHERE { ?w rdf:type ontology:Q863908 . ?w property:P688 resource:Q22264598 }
lipoyl synthase    NGO0793
action filter_type
action find_reverse
entity lipoyl synthase    NGO0793
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'lipoyl synthase    NGO0793']
SELECT DISTINCT ?w WHERE { ?w rdf:type ontology:nucleic_acid_sequence . ?w property:encodes resource:lipoyl_synthase____NGO0793 }
[]
nucleic acid sequence
Q22262792
SYSTEM
lipoyl synthase    NGO0793
Q22262792
(c(Q863908),P688,Q22264598)
action filter_type
action find_reverse
entity Q22264598
relation P688
type Q863908
The nucleic acid sequence that is encoded by lipoyl synthase NGO0793 is in lipoyl synthase NGO0793
[{'concept': 'Q863908'}, 'P688', 'Q22264598']
SELECT DISTINCT ?w WHERE { ?w rdf:type ontology:Q863908 . ?w property:P688 resource:Q22264598 }
lipoyl synthase    NGO0793
The nucleic acid sequence that is encoded by lipoyl synthase NGO0793 is in lipoyl synthase NGO0793
lipoyl synthase    NGO0793
action filter_type
action find_reverse
entity lipoyl synthase    NGO0793
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'lipoyl synthase    NGO0793']
SELECT DISTINCT ?w WHERE { ?w rdf:type ontology:nucleic_acid_sequence . ?w property:encodes resource:lipoyl_synthase____NGO0793 }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q22264598
P681
Q15989253
USER
What is a component of lipoyl synthase    NGO0793 ?
(Q22264598,P681,c(Q15989253))
action filter_type
action find
entity Q22264598
relation P681
type Q15989253
['Q22264598', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?k WHERE { resource:Q22264598 property:P681 ?k . ?k rdf:type ontology:Q15989253 }
lipoyl synthase    NGO0793
action filter_type
action find
entity lipoyl synthase    NGO0793
relation cell component
type part
['lipoyl synthase    NGO0793', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?k WHERE { resource:lipoyl_synthase____NGO0793 property:cell_component ?k . ?k rdf:type ontology:part }
[]
part
Q79899
SYSTEM
cytoplasm
Q79899
(Q22264598,P681,c(Q15989253))
action filter_type
action find
entity Q22264598
relation P681
type Q15989253
A component of lipoyl synthase NGO0793 is a [ANSWER]
['Q22264598', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?k WHERE { resource:Q22264598 property:P681 ?k . ?k rdf:type ontology:Q15989253 }
cytoplasm
A component of lipoyl synthase NGO0793 is a cytoplasm
cytoplasm
action filter_type
action find
entity lipoyl synthase    NGO0793
relation cell component
type part
['lipoyl synthase    NGO0793', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?k WHERE { resource:lipoyl_synthase____NGO0793 property:cell_component ?k . ?k rdf:type ontology:part }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q79899 Q27763191
P681
Q181394
USER
Is that part a cell component of endonuclease V    TM1865 ?
(Q27763191,P681,Q79899)
action is_in
entity Q79899
action find
entity Q27763191
relation P681
['Q27763191', 'P681', 'Q79899']
ASK WHERE { resource:Q27763191 property:P681 resource:Q79899 }
cytoplasm endonuclease V    TM1865
action is_in
entity cytoplasm
action find
entity endonuclease V    TM1865
relation cell component
['endonuclease V    TM1865', 'cell component', 'cytoplasm']
ASK WHERE { resource:endonuclease_V____TM1865 property:cell_component resource:cytoplasm }
[]
nutrient
SYSTEM
YES
(Q27763191,P681,Q79899)
action is_in
entity Q79899
action find
entity Q27763191
relation P681
[ANSWER]
['Q27763191', 'P681', 'Q79899']
ASK WHERE { resource:Q27763191 property:P681 resource:Q79899 }
Yes
action is_in
entity cytoplasm
action find
entity endonuclease V    TM1865
relation cell component
['endonuclease V    TM1865', 'cell component', 'cytoplasm']
ASK WHERE { resource:endonuclease_V____TM1865 property:cell_component resource:cytoplasm }
[]