Simple Question (Direct)
Simple Question
Q24278513
P681
Q15989253
USER
Which part is a component of sensor protein QseC    O3K_03815 ?
(Q24278513,P681,c(Q15989253))
action filter_type
action find
entity Q24278513
relation P681
type Q15989253
['Q24278513', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?t WHERE { resource:Q24278513 property:P681 ?t . ?t rdf:type ontology:Q15989253 }
sensor protein QseC    O3K_03815
action filter_type
action find
entity sensor protein QseC    O3K_03815
relation cell component
type part
['sensor protein QseC    O3K_03815', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?t WHERE { resource:sensor_protein_QseC____O3K_03815 property:cell_component ?t . ?t rdf:type ontology:part }
[]
part
Q14349455
SYSTEM
membrane
Q14349455
(Q24278513,P681,c(Q15989253))
action filter_type
action find
entity Q24278513
relation P681
type Q15989253
[ANSWER] is a component of sensor protein QseC O3K_03815
['Q24278513', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?t WHERE { resource:Q24278513 property:P681 ?t . ?t rdf:type ontology:Q15989253 }
membrane
Membrane is a component of sensor protein QseC O3K_03815
membrane
action filter_type
action find
entity sensor protein QseC    O3K_03815
relation cell component
type part
['sensor protein QseC    O3K_03815', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?t WHERE { resource:sensor_protein_QseC____O3K_03815 property:cell_component ?t . ?t rdf:type ontology:part }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q24278513
P702
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(Q14349455,P702,c(Q863908))
action filter_type
action find
entity Q24278513
relation P702
type Q863908
['Q14349455', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:Q863908 . resource:Q24278513 property:P702 ?m }
sensor protein QseC    O3K_03815
action filter_type
action find
entity sensor protein QseC    O3K_03815
relation encoded by
type nucleic acid sequence
['membrane', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:nucleic_acid_sequence . resource:sensor_protein_QseC____O3K_03815 property:encoded_by ?m }
[]
nucleic acid sequence
Q23112010
SYSTEM
sensor protein QseC    O3K_03815
Q23112010
(Q14349455,P702,c(Q863908))
action filter_type
action find
entity Q24278513
relation P702
type Q863908
Protein sensor protein QseC O3K 03815 encodes that nutrient
['Q14349455', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:Q863908 . resource:Q24278513 property:P702 ?m }
sensor protein QseC    O3K_03815
Protein sensor protein QseC O3K 03815 encodes that nutrient
sensor protein QseC    O3K_03815
action filter_type
action find
entity sensor protein QseC    O3K_03815
relation encoded by
type nucleic acid sequence
['membrane', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:nucleic_acid_sequence . resource:sensor_protein_QseC____O3K_03815 property:encoded_by ?m }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q23112010 Q24141396
P688
Q181394
USER
Is hypothetical protein    ECs3209 encoded by sensor protein QseC    O3K_03815 ?
(Q23112010,P688,Q24141396)
action is_in
entity Q24141396
action find
entity Q23112010
relation P688
['Q23112010', 'P688', 'Q24141396']
ASK WHERE { resource:Q23112010 property:P688 resource:Q24141396 }
sensor protein QseC    O3K_03815 hypothetical protein    ECs3209
action is_in
entity hypothetical protein    ECs3209
action find
entity sensor protein QseC    O3K_03815
relation encodes
['sensor protein QseC    O3K_03815', 'encodes', 'hypothetical protein    ECs3209']
ASK WHERE { resource:sensor_protein_QseC____O3K_03815 property:encodes resource:hypothetical_protein____ECs3209 }
[]
nutrient
SYSTEM
NO
(Q23112010,P688,Q24141396)
action is_in
entity Q24141396
action find
entity Q23112010
relation P688
[ANSWER]
['Q23112010', 'P688', 'Q24141396']
ASK WHERE { resource:Q23112010 property:P688 resource:Q24141396 }
No
action is_in
entity hypothetical protein    ECs3209
action find
entity sensor protein QseC    O3K_03815
relation encodes
['sensor protein QseC    O3K_03815', 'encodes', 'hypothetical protein    ECs3209']
ASK WHERE { resource:sensor_protein_QseC____O3K_03815 property:encodes resource:hypothetical_protein____ECs3209 }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23112010
P703
Q631147
USER
Which taxon does that nucleic acid sequence belong to ?
action filter_type
action find
entity Q23112010
relation P703
type Q631147
SELECT DISTINCT ?c WHERE { resource:Q23112010 property:P703 ?c . ?c rdf:type ontology:Q631147 }
sensor protein QseC    O3K_03815
action filter_type
action find
entity sensor protein QseC    O3K_03815
relation found in taxon
type infraspecific name
SELECT DISTINCT ?c WHERE { resource:sensor_protein_QseC____O3K_03815 property:found_in_taxon ?c . ?c rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102937
SYSTEM
Escherichia coli O104:H4 str. 2011C-3493
Q21102937
action filter_type
action find
entity Q23112010
relation P703
type Q631147
That nucleic acid sequence belongs to [ANSWER]
SELECT DISTINCT ?c WHERE { resource:Q23112010 property:P703 ?c . ?c rdf:type ontology:Q631147 }
Escherichia coli O104:H4 str. 2011C-3493
That nucleic acid sequence belongs to Escherichia coli O104:H4 str. 2011C-3493
Escherichia coli O104:H4 str. 2011C-3493
action filter_type
action find
entity sensor protein QseC    O3K_03815
relation found in taxon
type infraspecific name
SELECT DISTINCT ?c WHERE { resource:sensor_protein_QseC____O3K_03815 property:found_in_taxon ?c . ?c rdf:type ontology:infraspecific_name }
[]
Comparative Reasoning (All)
Comparative|More/Less|Single entity type|Indirect
P703
Q631147 Q863908
USER
Which infraspecific names are less number of nucleic acid sequences a part of than that infraspecific name ?
(c(Q863908),P703,c(Q631147))
action less
action find_reverse_tuple_counts
relation P703
type Q631147
type Q863908
action count
action filter_type
action find_reverse
entity Q21102937
relation P703
type Q863908
[{'concept': 'Q863908'}, 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?p WHERE { { SELECT DISTINCT ( COUNT ( ?k ) AS ?t ) WHERE { ?k rdf:type ontology:Q863908 . ?k property:P703 resource:Q21102937 } } . FILTER ( ?b < ?t ) . { SELECT DISTINCT ?p ( COUNT ( ?j ) AS ?b ) WHERE { ?j property:P703 ?p . ?j rdf:type ontology:Q863908 . ?p rdf:type ontology:Q631147 } GROUP BY ?p } }
action less
action find_reverse_tuple_counts
relation found in taxon
type infraspecific name
type nucleic acid sequence
action count
action filter_type
action find_reverse
entity Escherichia coli O104:H4 str. 2011C-3493
relation found in taxon
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?p WHERE { { SELECT DISTINCT ( COUNT ( ?k ) AS ?t ) WHERE { ?k rdf:type ontology:nucleic_acid_sequence . ?k property:found_in_taxon resource:Escherichia_coli_O104:H4_str._2011C-3493 } } . FILTER ( ?b < ?t ) . { SELECT DISTINCT ?p ( COUNT ( ?j ) AS ?b ) WHERE { ?j property:found_in_taxon ?p . ?j rdf:type ontology:nucleic_acid_sequence . ?p rdf:type ontology:infraspecific_name } GROUP BY ?p } }
[]
infraspecific name nucleic acid sequence
Q21102919 Q21079559 Q21102990
SYSTEM
Legionella pneumophila subsp. pneumophila str. Philadelphia 1, Salinibacter ruber DSM 13855, Mycoplasma pneumoniae M129
Q21102990 Q21102991 Q21102992 Q21102993 Q21102994 Q21102996 Q21102997 Q21102999 Q21102960 Q21065229 Q21102919 Q21102943 Q21102942 Q21102941 Q21102940 Q21102947 Q21102946 Q21102920 Q21102965 Q21102964 Q21102949 Q21102966 Q21102961 Q21102963 Q21102962 Q21102921 Q21102987 Q21102922 Q21102925 Q21102924 Q21102927 Q21102974 Q21102989 Q21079490 Q21079491 Q21102985 Q21102984 Q21102983 Q21102982 Q21102981 Q21102980 Q21102973 Q21102969 Q21102944 Q21102968 Q21102954 Q21102955 Q21102956 Q21102957 Q21102950 Q21102951 Q21102978 Q21102953 Q21102976 Q21102977 Q21102975 Q21102959 Q21102971 Q21064863 Q21064832 Q21102931 Q21102948 Q21102934 Q21102979 Q21079559 Q21102938 Q21102967
(c(Q863908),P703,c(Q631147))
action less
action find_reverse_tuple_counts
relation P703
type Q631147
type Q863908
action count
action filter_type
action find_reverse
entity Q21102937
relation P703
type Q863908
[ANSWERS] are less number of nucleic acid sequences a part of than that infraspecific name
[{'concept': 'Q863908'}, 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?p WHERE { { SELECT DISTINCT ( COUNT ( ?k ) AS ?t ) WHERE { ?k rdf:type ontology:Q863908 . ?k property:P703 resource:Q21102937 } } . FILTER ( ?b < ?t ) . { SELECT DISTINCT ?p ( COUNT ( ?j ) AS ?b ) WHERE { ?j property:P703 ?p . ?j rdf:type ontology:Q863908 . ?p rdf:type ontology:Q631147 } GROUP BY ?p } }
Mycoplasma pneumoniae M129 Thermotoga maritima MSB8 Gardnerella vaginalis ATCC 14019 Burkholderia mallei ATCC 23344 Streptococcus mitis B6 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Salmonella enterica subsp. enterica serovar Typhi str. CT18 Geobacter sulfurreducens PCA Streptococcus suis BM407 Leptospira interrogans serovar Lai str. 56601 Legionella pneumophila subsp. pneumophila str. Philadelphia 1 Yersinia pestis CO92 Yersinia enterocolitica subsp. enterocolitica 8081 Shigella flexneri 2a str. 301 Shigella dysenteriae Sd197 Vibrio parahaemolyticus RIMD 2210633 Vibrio fischeri ES114 Acinetobacter pittii PHEA-2 Enterococcus faecalis V583 Streptococcus pyogenes M1 GAS Rickettsia prowazekii str. Madrid E Enterococcus faecium DO Streptococcus mutans UA159 Streptococcus pneumoniae R6 Streptococcus agalactiae 2603V/R Neisseria gonorrhoeae FA 1090 Mycobacterium tuberculosis H37Rv Neisseria meningitidis MC58 Bordetella pertussis Tohama I Bordetella bronchiseptica 253 Enterobacter aerogenes KCTC 2190 Clostridium botulinum A str. Hall Mycoplasma mycoides subsp. mycoides SC str. PG1 Pseudomonas syringae pv. syringae B728a Xanthomonas campestris pv. campestris str. ATCC 33913 Mycobacterium leprae TN Mycobacterium bovis AF2122/97 Corynebacterium glutamicum ATCC 13032 Bifidobacterium bifidum PRL2010 Listeria monocytogenes EGD-e Lactobacillus salivarius UCC118 Clostridium acetobutylicum ATCC 824 Bacillus anthracis str. Sterne Aeromonas hydrophila subsp. hydrophila ATCC 7966 Bacillus anthracis str. Ames Rhodospirillum rubrum ATCC 11170 Chloroflexus aurantiacus J-10-fl Staphylococcus aureus subsp. aureus NCTC 8325 Staphylococcus epidermidis ATCC 12228 Bacteroides fragilis YCH46 Fusobacterium nucleatum subsp. nucleatum ATCC 25586 Lactobacillus casei ATCC 334 Rhodobacter sphaeroides 2.4.1 Peptoclostridium difficile 630 Lactobacillus acidophilus NCFM Clostridium botulinum A str. ATCC 3502 Deinococcus radiodurans R1 Bacillus subtilis subsp. subtilis str. 168 Bordetella parapertussis Bpp5 Coxiella burnetii RSA 493 Escherichia coli UMN026 Haemophilus influenzae Rd KW20 Escherichia coli O83:H1 str. NRG 857C Lactobacillus plantarum WCFS1 Salinibacter ruber DSM 13855 Escherichia coli str. K-12 substr. MG1655 Lactococcus lactis subsp. lactis Il1403
Legionella pneumophila subsp. pneumophila str. Philadelphia 1, Salinibacter ruber DSM 13855 and Mycoplasma pneumoniae M129 are less number of nucleic acid sequences a part of than that infraspecific name
Legionella pneumophila subsp. pneumophila str. Philadelphia 1 Salinibacter ruber DSM 13855 Mycoplasma pneumoniae M129
action less
action find_reverse_tuple_counts
relation found in taxon
type infraspecific name
type nucleic acid sequence
action count
action filter_type
action find_reverse
entity Escherichia coli O104:H4 str. 2011C-3493
relation found in taxon
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?p WHERE { { SELECT DISTINCT ( COUNT ( ?k ) AS ?t ) WHERE { ?k rdf:type ontology:nucleic_acid_sequence . ?k property:found_in_taxon resource:Escherichia_coli_O104:H4_str._2011C-3493 } } . FILTER ( ?b < ?t ) . { SELECT DISTINCT ?p ( COUNT ( ?j ) AS ?b ) WHERE { ?j property:found_in_taxon ?p . ?j rdf:type ontology:nucleic_acid_sequence . ?p rdf:type ontology:infraspecific_name } GROUP BY ?p } }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q24278513
P682
Q1057
USER
Which metabolic process is sensor protein QseC    O3K_03815 involved in ?
(Q24278513,P682,c(Q1057))
action filter_type
action find
entity Q24278513
relation P682
type Q1057
['Q24278513', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?q WHERE { resource:Q24278513 property:P682 ?q . ?q rdf:type ontology:Q1057 }
sensor protein QseC    O3K_03815
action filter_type
action find
entity sensor protein QseC    O3K_03815
relation biological process
type metabolic process
['sensor protein QseC    O3K_03815', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?q WHERE { resource:sensor_protein_QseC____O3K_03815 property:biological_process ?q . ?q rdf:type ontology:metabolic_process }
[]
metabolic process
Q14863351
SYSTEM
signal transduction by protein phosphorylation
Q14863351
(Q24278513,P682,c(Q1057))
action filter_type
action find
entity Q24278513
relation P682
type Q1057
Which metabolic process is sensor protein QseC O3K_03815 involved in
['Q24278513', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?q WHERE { resource:Q24278513 property:P682 ?q . ?q rdf:type ontology:Q1057 }
signal transduction by protein phosphorylation
Which metabolic process is sensor protein QseC O3K_03815 involved in
signal transduction by protein phosphorylation
action filter_type
action find
entity sensor protein QseC    O3K_03815
relation biological process
type metabolic process
['sensor protein QseC    O3K_03815', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?q WHERE { resource:sensor_protein_QseC____O3K_03815 property:biological_process ?q . ?q rdf:type ontology:metabolic_process }
[]
Logical Reasoning (All)
Logical|Intersection|Single_Relation|Incomplete
Q23474710 Q24278513
P682
Q1057
USER
And also histidine kinase    Caur_1442
AND((Q24278513,P682,c(Q1057)), (Q23474710,P682,c(Q1057)))
action filter_type
action intersection
action find
entity Q24278513
relation P682
action find
entity Q23474710
relation P682
type Q1057
{'AND': [['Q24278513', 'P682', {'concept': 'Q1057'}], ['Q23474710', 'P682', {'concept': 'Q1057'}]]}
SELECT DISTINCT ?a WHERE { resource:Q24278513 property:P682 ?a . resource:Q23474710 property:P682 ?a . ?a rdf:type ontology:Q1057 }
histidine kinase    Caur_1442 sensor protein QseC    O3K_03815
action filter_type
action intersection
action find
entity sensor protein QseC    O3K_03815
relation biological process
action find
entity histidine kinase    Caur_1442
relation biological process
type metabolic process
{'AND': [['sensor protein QseC    O3K_03815', 'biological process', {'concept': 'metabolic process'}], ['histidine kinase    Caur_1442', 'biological process', {'concept': 'metabolic process'}]]}
SELECT DISTINCT ?a WHERE { resource:sensor_protein_QseC____O3K_03815 property:biological_process ?a . resource:histidine_kinase____Caur_1442 property:biological_process ?a . ?a rdf:type ontology:metabolic_process }
[]
metabolic process
Q14863351
SYSTEM
signal transduction by protein phosphorylation
Q14863351
AND((Q24278513,P682,c(Q1057)), (Q23474710,P682,c(Q1057)))
action filter_type
action intersection
action find
entity Q24278513
relation P682
action find
entity Q23474710
relation P682
type Q1057
[ANSWER]
{'AND': [['Q24278513', 'P682', {'concept': 'Q1057'}], ['Q23474710', 'P682', {'concept': 'Q1057'}]]}
SELECT DISTINCT ?a WHERE { resource:Q24278513 property:P682 ?a . resource:Q23474710 property:P682 ?a . ?a rdf:type ontology:Q1057 }
signal transduction by protein phosphorylation
signal transduction by protein phosphorylation
action filter_type
action intersection
action find
entity sensor protein QseC    O3K_03815
relation biological process
action find
entity histidine kinase    Caur_1442
relation biological process
type metabolic process
{'AND': [['sensor protein QseC    O3K_03815', 'biological process', {'concept': 'metabolic process'}], ['histidine kinase    Caur_1442', 'biological process', {'concept': 'metabolic process'}]]}
SELECT DISTINCT ?a WHERE { resource:sensor_protein_QseC____O3K_03815 property:biological_process ?a . resource:histidine_kinase____Caur_1442 property:biological_process ?a . ?a rdf:type ontology:metabolic_process }
[]