Simple Question (Direct)
Simple Question
Q23448942
P703
Q631147
USER
Which taxon does single-stranded-DNA-specific exonuclease RECJ (recJ)    RP528 belong to ?
(Q23448942,P703,c(Q631147))
action filter_type
action find
entity Q23448942
relation P703
type Q631147
['Q23448942', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?y WHERE { resource:Q23448942 property:P703 ?y . ?y rdf:type ontology:Q631147 }
single-stranded-DNA-specific exonuclease RECJ (recJ)    RP528
action filter_type
action find
entity single-stranded-DNA-specific exonuclease RECJ (recJ)    RP528
relation found in taxon
type infraspecific name
['single-stranded-DNA-specific exonuclease RECJ (recJ)    RP528', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?y WHERE { resource:single-stranded-DNA-specific_exonuclease_RECJ_(recJ)____RP528 property:found_in_taxon ?y . ?y rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102949
SYSTEM
Rickettsia prowazekii str. Madrid E
Q21102949
(Q23448942,P703,c(Q631147))
action filter_type
action find
entity Q23448942
relation P703
type Q631147
[ANSWER] single-stranded-DNA-specific exonuclease RECJ (recJ) RP528 belong to
['Q23448942', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?y WHERE { resource:Q23448942 property:P703 ?y . ?y rdf:type ontology:Q631147 }
Rickettsia prowazekii str. Madrid E
Rickettsia prowazekii str. Madrid E single-stranded-DNA-specific exonuclease RECJ (recJ) RP528 belong to
Rickettsia prowazekii str. Madrid E
action filter_type
action find
entity single-stranded-DNA-specific exonuclease RECJ (recJ)    RP528
relation found in taxon
type infraspecific name
['single-stranded-DNA-specific exonuclease RECJ (recJ)    RP528', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?y WHERE { resource:single-stranded-DNA-specific_exonuclease_RECJ_(recJ)____RP528 property:found_in_taxon ?y . ?y rdf:type ontology:infraspecific_name }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23448942
P688
Q863908
USER
What is the nucleic acid sequence that is encoded by single-stranded-DNA-specific exonuclease RECJ (recJ)    RP528 ?
(c(Q863908),P688,Q23448942)
action filter_type
action find_reverse
entity Q23448942
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q23448942']
SELECT DISTINCT ?h WHERE { ?h property:P688 resource:Q23448942 . ?h rdf:type ontology:Q863908 }
single-stranded-DNA-specific exonuclease RECJ (recJ)    RP528
action filter_type
action find_reverse
entity single-stranded-DNA-specific exonuclease RECJ (recJ)    RP528
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'single-stranded-DNA-specific exonuclease RECJ (recJ)    RP528']
SELECT DISTINCT ?h WHERE { ?h property:encodes resource:single-stranded-DNA-specific_exonuclease_RECJ_(recJ)____RP528 . ?h rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23381218
SYSTEM
single-stranded-DNA-specific exonuclease RECJ (recJ)    RP528
Q23381218
(c(Q863908),P688,Q23448942)
action filter_type
action find_reverse
entity Q23448942
relation P688
type Q863908
The nucleic acid sequence that is encoded by single-stranded-DNA-specific exonuclease RECJ ( recJ ) RP528 is in single-stranded-DNA-specific exonuclease RECJ (recJ) RP528
[{'concept': 'Q863908'}, 'P688', 'Q23448942']
SELECT DISTINCT ?h WHERE { ?h property:P688 resource:Q23448942 . ?h rdf:type ontology:Q863908 }
single-stranded-DNA-specific exonuclease RECJ (recJ)    RP528
The nucleic acid sequence that is encoded by single-stranded-DNA-specific exonuclease RECJ ( recJ ) RP528 is in single-stranded-DNA-specific exonuclease RECJ (recJ) RP528
single-stranded-DNA-specific exonuclease RECJ (recJ)    RP528
action filter_type
action find_reverse
entity single-stranded-DNA-specific exonuclease RECJ (recJ)    RP528
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'single-stranded-DNA-specific exonuclease RECJ (recJ)    RP528']
SELECT DISTINCT ?h WHERE { ?h property:encodes resource:single-stranded-DNA-specific_exonuclease_RECJ_(recJ)____RP528 . ?h rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23448942
P702
Q863908
USER
What is the gene that encodes that nutrient ?
(Q23381218,P702,c(Q863908))
action filter_type
action find
entity Q23448942
relation P702
type Q863908
['Q23381218', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?r WHERE { resource:Q23448942 property:P702 ?r . ?r rdf:type ontology:Q863908 }
single-stranded-DNA-specific exonuclease RECJ (recJ)    RP528
action filter_type
action find
entity single-stranded-DNA-specific exonuclease RECJ (recJ)    RP528
relation encoded by
type nucleic acid sequence
['single-stranded-DNA-specific exonuclease RECJ (recJ)    RP528', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?r WHERE { resource:single-stranded-DNA-specific_exonuclease_RECJ_(recJ)____RP528 property:encoded_by ?r . ?r rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23381218
SYSTEM
single-stranded-DNA-specific exonuclease RECJ (recJ)    RP528
Q23381218
(Q23381218,P702,c(Q863908))
action filter_type
action find
entity Q23448942
relation P702
type Q863908
The gene that encodes that nutrient is a single-stranded-DNA-specific exonuclease RECJ (recJ) RP528
['Q23381218', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?r WHERE { resource:Q23448942 property:P702 ?r . ?r rdf:type ontology:Q863908 }
single-stranded-DNA-specific exonuclease RECJ (recJ)    RP528
The gene that encodes that nutrient is a single-stranded-DNA-specific exonuclease RECJ (recJ) RP528
single-stranded-DNA-specific exonuclease RECJ (recJ)    RP528
action filter_type
action find
entity single-stranded-DNA-specific exonuclease RECJ (recJ)    RP528
relation encoded by
type nucleic acid sequence
['single-stranded-DNA-specific exonuclease RECJ (recJ)    RP528', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?r WHERE { resource:single-stranded-DNA-specific_exonuclease_RECJ_(recJ)____RP528 property:encoded_by ?r . ?r rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q23381218 Q23517714
P702
Q181394
USER
Is sporulation protein cse60    BSU30080 encoded by that nucleic acid sequence ?
(Q23517714,P702,Q23381218)
action is_in
entity Q23517714
action find
entity Q23381218
relation P702
['Q23517714', 'P702', 'Q23381218']
ASK WHERE { resource:Q23381218 property:P702 resource:Q23517714 }
single-stranded-DNA-specific exonuclease RECJ (recJ)    RP528 sporulation protein cse60    BSU30080
action is_in
entity sporulation protein cse60    BSU30080
action find
entity single-stranded-DNA-specific exonuclease RECJ (recJ)    RP528
relation encoded by
['sporulation protein cse60    BSU30080', 'encoded by', 'single-stranded-DNA-specific exonuclease RECJ (recJ)    RP528']
ASK WHERE { resource:single-stranded-DNA-specific_exonuclease_RECJ_(recJ)____RP528 property:encoded_by resource:sporulation_protein_cse60____BSU30080 }
[]
nutrient
SYSTEM
NO
(Q23517714,P702,Q23381218)
action is_in
entity Q23517714
action find
entity Q23381218
relation P702
[ANSWER]
['Q23517714', 'P702', 'Q23381218']
ASK WHERE { resource:Q23381218 property:P702 resource:Q23517714 }
No
action is_in
entity sporulation protein cse60    BSU30080
action find
entity single-stranded-DNA-specific exonuclease RECJ (recJ)    RP528
relation encoded by
['sporulation protein cse60    BSU30080', 'encoded by', 'single-stranded-DNA-specific exonuclease RECJ (recJ)    RP528']
ASK WHERE { resource:single-stranded-DNA-specific_exonuclease_RECJ_(recJ)____RP528 property:encoded_by resource:sporulation_protein_cse60____BSU30080 }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23324644 Q23381218
P702
Q181394
USER
Which nutrients do single-stranded-DNA-specific exonuclease RECJ (recJ)    RP528 or hypothetical protein    DVU2998 encode ?
OR((c(Q181394),P702,Q23381218), (c(Q181394),P702,Q23324644))
action filter_type
action union
action find_reverse
entity Q23381218
relation P702
action find_reverse
entity Q23324644
relation P702
type Q181394
{'OR': [[{'concept': 'Q181394'}, 'P702', 'Q23381218'], [{'concept': 'Q181394'}, 'P702', 'Q23324644']]}
SELECT DISTINCT ?q WHERE { { ?q property:P702 ?t . VALUES ( ?t ) { ( resource:Q23381218 ) ( resource:Q23324644 ) } } . ?q rdf:type ontology:Q181394 }
hypothetical protein    DVU2998 single-stranded-DNA-specific exonuclease RECJ (recJ)    RP528
action filter_type
action union
action find_reverse
entity single-stranded-DNA-specific exonuclease RECJ (recJ)    RP528
relation encoded by
action find_reverse
entity hypothetical protein    DVU2998
relation encoded by
type nutrient
{'OR': [[{'concept': 'nutrient'}, 'encoded by', 'single-stranded-DNA-specific exonuclease RECJ (recJ)    RP528'], [{'concept': 'nutrient'}, 'encoded by', 'hypothetical protein    DVU2998']]}
SELECT DISTINCT ?q WHERE { { ?q property:encoded_by ?t . VALUES ( ?t ) { ( resource:single-stranded-DNA-specific_exonuclease_RECJ_(recJ)____RP528 ) ( resource:hypothetical_protein____DVU2998 ) } } . ?q rdf:type ontology:nutrient }
[]
nutrient
Q23462549 Q23448942
SYSTEM
hypothetical protein    DVU2998, single-stranded-DNA-specific exonuclease RECJ (recJ)    RP528
Q23462549 Q23448942
OR((c(Q181394),P702,Q23381218), (c(Q181394),P702,Q23324644))
action filter_type
action union
action find_reverse
entity Q23381218
relation P702
action find_reverse
entity Q23324644
relation P702
type Q181394
[ANSWERS]
{'OR': [[{'concept': 'Q181394'}, 'P702', 'Q23381218'], [{'concept': 'Q181394'}, 'P702', 'Q23324644']]}
SELECT DISTINCT ?q WHERE { { ?q property:P702 ?t . VALUES ( ?t ) { ( resource:Q23381218 ) ( resource:Q23324644 ) } } . ?q rdf:type ontology:Q181394 }
hypothetical protein    DVU2998 single-stranded-DNA-specific exonuclease RECJ (recJ)    RP528
Hypothetical protein DVU2998 and single-stranded-DNA-specific exonuclease RECJ (recJ) RP528 single-stranded-DNA-specific exonuclease RECJ (recJ) RP528 or hypothetical protein DVU2998 encode
hypothetical protein    DVU2998 single-stranded-DNA-specific exonuclease RECJ (recJ)    RP528
action filter_type
action union
action find_reverse
entity single-stranded-DNA-specific exonuclease RECJ (recJ)    RP528
relation encoded by
action find_reverse
entity hypothetical protein    DVU2998
relation encoded by
type nutrient
{'OR': [[{'concept': 'nutrient'}, 'encoded by', 'single-stranded-DNA-specific exonuclease RECJ (recJ)    RP528'], [{'concept': 'nutrient'}, 'encoded by', 'hypothetical protein    DVU2998']]}
SELECT DISTINCT ?q WHERE { { ?q property:encoded_by ?t . VALUES ( ?t ) { ( resource:single-stranded-DNA-specific_exonuclease_RECJ_(recJ)____RP528 ) ( resource:hypothetical_protein____DVU2998 ) } } . ?q rdf:type ontology:nutrient }
[]
Comparative Reasoning (All)
Comparative|More/Less|Single entity type
Q21172195
P682
Q2996394 Q181394
USER
Which biological processes are approximately the same number of nutrients involved in as positive regulation of growth factor dependent skeletal muscle satellite cell proliferation ?
(c(Q181394),P682,c(Q2996394))
action approx
action find_reverse_tuple_counts
relation P682
type Q2996394
type Q181394
action count
action filter_type
action find
entity Q21172195
relation P682
type Q2996394
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?q WHERE { { SELECT DISTINCT ?q ( COUNT ( ?o ) AS ?h ) WHERE { ?o property:P682 ?q . ?q rdf:type ontology:Q2996394 . ?o rdf:type ontology:Q181394 } GROUP BY ?q } . { SELECT DISTINCT ( COUNT ( ?e ) AS ?w ) WHERE { resource:Q21172195 property:P682 ?e . ?e rdf:type ontology:Q2996394 } } . FILTER ( ?h = ?w ) }
positive regulation of growth factor dependent skeletal muscle satellite cell proliferation
action approx
action find_reverse_tuple_counts
relation biological process
type biological process
type nutrient
action count
action filter_type
action find
entity positive regulation of growth factor dependent skeletal muscle satellite cell proliferation
relation biological process
type biological process
[{'concept': 'nutrient'}, 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?q WHERE { { SELECT DISTINCT ?q ( COUNT ( ?o ) AS ?h ) WHERE { ?o property:biological_process ?q . ?q rdf:type ontology:biological_process . ?o rdf:type ontology:nutrient } GROUP BY ?q } . { SELECT DISTINCT ( COUNT ( ?e ) AS ?w ) WHERE { resource:positive_regulation_of_growth_factor_dependent_skeletal_muscle_satellite_cell_proliferation property:biological_process ?e . ?e rdf:type ontology:biological_process } } . FILTER ( ?h = ?w ) }
[]
biological process nutrient
Q14877671 Q21750263 Q21108938
SYSTEM
cartilage condensation, FtsZ-dependent cytokinesis, preantral ovarian follicle growth
Q22294591 Q21172195 Q14862258 Q21107328 Q22295734 Q14860201 Q288322 Q14902079 Q14863388 Q14904219 Q14911711 Q22271492 Q22271494 Q14864899 Q22294585 Q21122953 Q21104659 Q14860196 Q22294349 Q14860198 Q14864005 Q15325345 Q22269626 Q22269531 Q24459941 Q21438150 Q14897640 Q208353 Q21114926 Q14865609 Q21116174 Q14876119 Q14877671 Q22272257 Q21097540 Q14864099 Q21103041 Q21444598 Q21136671 Q21111890 Q22253821 Q21101822 Q14863654 Q21109007 Q22271536 Q22279989 Q21127160 Q14865397 Q15314382 Q14859996 Q14865659 Q22294730 Q21171796 Q14331109 Q21149516 Q21130714 Q2663023 Q21120908 Q189159 Q22271501 Q22281166 Q22299432 Q14908045 Q14863467 Q21105147 Q21123910 Q15320925 Q163261 Q22298156 Q22271697 Q22269715 Q21119405 Q22297692 Q21130764 Q21750263 Q21762806 Q333666 Q21418091 Q14864443 Q14820875 Q21124921 Q21106668 Q14904764 Q21104990 Q14863664 Q22250139 Q14863667 Q21108563 Q21111494 Q14914540 Q17304930 Q21758676 Q22284328 Q21108938 Q21106266 Q14864210 Q14907898 Q21106018 Q22271479 Q22272219 Q14904772 Q14904771 Q14819471 Q14912956 Q21108839 Q22279704 Q14863453 Q14882364 Q14819856 Q21104832 Q21102309 Q22289134 Q14863538 Q22269699 Q14599729 Q22284230 Q14851921 Q21115753 Q24459846 Q22274350 Q21115817 Q14876924 Q14864904 Q14645719 Q14873676 Q21104842 Q21132115 Q21114820
(c(Q181394),P682,c(Q2996394))
action approx
action find_reverse_tuple_counts
relation P682
type Q2996394
type Q181394
action count
action filter_type
action find
entity Q21172195
relation P682
type Q2996394
The [ANSWERS] are approximately the same number of nutrients involved in as positive regulation of growth factor dependent skeletal muscle satellite cell proliferation
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?q WHERE { { SELECT DISTINCT ?q ( COUNT ( ?o ) AS ?h ) WHERE { ?o property:P682 ?q . ?q rdf:type ontology:Q2996394 . ?o rdf:type ontology:Q181394 } GROUP BY ?q } . { SELECT DISTINCT ( COUNT ( ?e ) AS ?w ) WHERE { resource:Q21172195 property:P682 ?e . ?e rdf:type ontology:Q2996394 } } . FILTER ( ?h = ?w ) }
mitotic cell cycle arrest in response to pheromone positive regulation of growth factor dependent skeletal muscle satellite cell proliferation dopamine uptake involved in synaptic transmission development involved in symbiotic interaction leukocyte activation anatomical structure development autophagy T cell mediated cytotoxicity response to external stimulus developmental process involved in reproduction male meiosis detoxification of zinc ion detoxification of arsenic-containing substance acrosome matrix dispersal adaptation of signaling pathway by response to pheromone involved in conjugation with cellular fusion male pronucleus assembly detoxification of nitrogen compound developmental growth dormancy process anatomical structure formation involved in morphogenesis ovulation cycle pronuclear fusion single-organism developmental process filamentous growth manchette assembly protein activation cascade synaptic vesicle docking circadian rhythm complement-dependent cytotoxicity myeloid cell homeostasis synaptic vesicle targeting antigen processing and presentation cartilage condensation meiosis I DNA methylation involved in gamete generation ovulation cycle process protein unfolding positive regulation of flagellated sperm motility involved in capacitation female pronucleus assembly synaptic vesicle priming regulation of transcription involved in meiotic cell cycle response to redox state multicellular organismal reproductive process developmental induction response to pheromone involved in conjugation with cellular fusion gene conversion at mating-type locus, DNA double-strand break processing fertilization, exchange of chromosomal proteins T cell selection natural killer cell mediated cytotoxicity mesenchymal smoothened signaling pathway involved in prostate gland development tolerance induction karyogamy involved in conjugation with cellular fusion nitric oxide storage receptor localization to synapse organic substance metabolic process catabolic process cytolysis cellular localization cell growth multi-organism cellular process gene conversion at mating-type locus, DNA double-strand break formation nitrogen utilization menstrual cycle phase immune system development single organism reproductive process leukocyte mediated cytotoxicity locomotion involved in locomotory behavior acrosome reaction maintenance of cell number activation of immune response budding cell bud growth single-organism behavior spore germination ultradian rhythm FtsZ-dependent cytokinesis primary metabolic process abscission antibody-dependent cellular cytotoxicity response to inactivity response to activity P granule organization synaptic vesicle fusion to presynaptic active zone membrane primary ovarian follicle growth spermatid nucleus differentiation neurotransmitter secretion meiotic cell cycle process rhythmic behavior cellular response to stimulus activation of meiosis involved in egg activation female meiotic division cell cycle process carbon utilization peptide mating pheromone maturation involved in conjugation with cellular fusion preantral ovarian follicle growth carbohydrate utilization anatomical structure morphogenesis response to other organism cell separation after cytokinesis mycothiol-dependent detoxification detection of stimulus spermatogenesis, exchange of chromosomal proteins sperm chromatin condensation leukocyte migration ovarian cumulus expansion adhesion of symbiont to host gene conversion at mating-type locus, DNA repair synthesis leukocyte homeostasis killing of cells of other organism feeding behavior synaptic vesicle exocytosis response to abiotic stimulus cellular component organization pigmentation growth involved in symbiotic interaction response to estrogen cell wall organization or biogenesis hormone metabolic process behavioral response to nutrient intermicrovillar adhesion phenotypic switching directional locomotion cellular metabolic process response to biotic stimulus locomotory behavior cell motility chromosome localization to nuclear envelope involved in homologous chromosome segregation prevention of polyspermy spermatid nucleus elongation
The cartilage condensation, FtsZ-dependent cytokinesis and preantral ovarian follicle growth are approximately the same number of nutrients involved in as positive regulation of growth factor dependent skeletal muscle satellite cell proliferation
cartilage condensation FtsZ-dependent cytokinesis preantral ovarian follicle growth
action approx
action find_reverse_tuple_counts
relation biological process
type biological process
type nutrient
action count
action filter_type
action find
entity positive regulation of growth factor dependent skeletal muscle satellite cell proliferation
relation biological process
type biological process
[{'concept': 'nutrient'}, 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?q WHERE { { SELECT DISTINCT ?q ( COUNT ( ?o ) AS ?h ) WHERE { ?o property:biological_process ?q . ?q rdf:type ontology:biological_process . ?o rdf:type ontology:nutrient } GROUP BY ?q } . { SELECT DISTINCT ( COUNT ( ?e ) AS ?w ) WHERE { resource:positive_regulation_of_growth_factor_dependent_skeletal_muscle_satellite_cell_proliferation property:biological_process ?e . ?e rdf:type ontology:biological_process } } . FILTER ( ?h = ?w ) }
[]
Comparative Reasoning (All)
Comparative|More/Less|Single entity type|Incomplete
Q14851921
P682
Q2996394 Q181394
USER
And how about hormone metabolic process?
(c(Q181394),P682,c(Q2996394))
action approx
action find_reverse_tuple_counts
relation P682
type Q2996394
type Q181394
action count
action filter_type
action find
entity Q14851921
relation P682
type Q2996394
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?f WHERE { { SELECT DISTINCT ( COUNT ( ?n ) AS ?c ) WHERE { resource:Q14851921 property:P682 ?n . ?n rdf:type ontology:Q2996394 } } . FILTER ( ?e = ?c ) . { SELECT DISTINCT ?f ( COUNT ( ?h ) AS ?e ) WHERE { ?h rdf:type ontology:Q181394 . ?f rdf:type ontology:Q2996394 . ?h property:P682 ?f } GROUP BY ?f } }
hormone metabolic process
action approx
action find_reverse_tuple_counts
relation biological process
type biological process
type nutrient
action count
action filter_type
action find
entity hormone metabolic process
relation biological process
type biological process
[{'concept': 'nutrient'}, 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?f WHERE { { SELECT DISTINCT ( COUNT ( ?n ) AS ?c ) WHERE { resource:hormone_metabolic_process property:biological_process ?n . ?n rdf:type ontology:biological_process } } . FILTER ( ?e = ?c ) . { SELECT DISTINCT ?f ( COUNT ( ?h ) AS ?e ) WHERE { ?h rdf:type ontology:nutrient . ?f rdf:type ontology:biological_process . ?h property:biological_process ?f } GROUP BY ?f } }
[]
biological process nutrient
Q14877671 Q21750263 Q21108938
SYSTEM
cartilage condensation, FtsZ-dependent cytokinesis, preantral ovarian follicle growth
Q22294591 Q21172195 Q14862258 Q21107328 Q22295734 Q14860201 Q288322 Q14902079 Q14863388 Q14904219 Q14911711 Q22271492 Q22271494 Q14864899 Q22294585 Q21122953 Q21104659 Q14860196 Q22294349 Q14860198 Q14864005 Q15325345 Q22269626 Q22269531 Q24459941 Q21438150 Q14897640 Q208353 Q21114926 Q14865609 Q21116174 Q14876119 Q14877671 Q22272257 Q21097540 Q14864099 Q21103041 Q21444598 Q21136671 Q21111890 Q22253821 Q21101822 Q14863654 Q21109007 Q22271536 Q22279989 Q21127160 Q14865397 Q15314382 Q14859996 Q14865659 Q22294730 Q21171796 Q14331109 Q21149516 Q21130714 Q2663023 Q21120908 Q189159 Q22271501 Q22281166 Q22299432 Q14908045 Q14863467 Q21105147 Q21123910 Q15320925 Q163261 Q22298156 Q22271697 Q22269715 Q21119405 Q22297692 Q21130764 Q21750263 Q21762806 Q333666 Q21418091 Q14864443 Q14820875 Q21124921 Q21106668 Q14904764 Q21104990 Q14863664 Q22250139 Q14863667 Q21108563 Q21111494 Q14914540 Q17304930 Q21758676 Q22284328 Q21108938 Q21106266 Q14864210 Q14907898 Q21106018 Q22271479 Q22272219 Q14904772 Q14904771 Q14819471 Q14912956 Q21108839 Q22279704 Q14863453 Q14882364 Q14819856 Q21104832 Q21102309 Q22289134 Q14863538 Q22269699 Q14599729 Q22284230 Q14851921 Q21115753 Q24459846 Q22274350 Q21115817 Q14876924 Q14864904 Q14645719 Q14873676 Q21104842 Q21132115 Q21114820
(c(Q181394),P682,c(Q2996394))
action approx
action find_reverse_tuple_counts
relation P682
type Q2996394
type Q181394
action count
action filter_type
action find
entity Q14851921
relation P682
type Q2996394
[ANSWERS]
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?f WHERE { { SELECT DISTINCT ( COUNT ( ?n ) AS ?c ) WHERE { resource:Q14851921 property:P682 ?n . ?n rdf:type ontology:Q2996394 } } . FILTER ( ?e = ?c ) . { SELECT DISTINCT ?f ( COUNT ( ?h ) AS ?e ) WHERE { ?h rdf:type ontology:Q181394 . ?f rdf:type ontology:Q2996394 . ?h property:P682 ?f } GROUP BY ?f } }
mitotic cell cycle arrest in response to pheromone positive regulation of growth factor dependent skeletal muscle satellite cell proliferation dopamine uptake involved in synaptic transmission development involved in symbiotic interaction leukocyte activation anatomical structure development autophagy T cell mediated cytotoxicity response to external stimulus developmental process involved in reproduction male meiosis detoxification of zinc ion detoxification of arsenic-containing substance acrosome matrix dispersal adaptation of signaling pathway by response to pheromone involved in conjugation with cellular fusion male pronucleus assembly detoxification of nitrogen compound developmental growth dormancy process anatomical structure formation involved in morphogenesis ovulation cycle pronuclear fusion single-organism developmental process filamentous growth manchette assembly protein activation cascade synaptic vesicle docking circadian rhythm complement-dependent cytotoxicity myeloid cell homeostasis synaptic vesicle targeting antigen processing and presentation cartilage condensation meiosis I DNA methylation involved in gamete generation ovulation cycle process protein unfolding positive regulation of flagellated sperm motility involved in capacitation female pronucleus assembly synaptic vesicle priming regulation of transcription involved in meiotic cell cycle response to redox state multicellular organismal reproductive process developmental induction response to pheromone involved in conjugation with cellular fusion gene conversion at mating-type locus, DNA double-strand break processing fertilization, exchange of chromosomal proteins T cell selection natural killer cell mediated cytotoxicity mesenchymal smoothened signaling pathway involved in prostate gland development tolerance induction karyogamy involved in conjugation with cellular fusion nitric oxide storage receptor localization to synapse organic substance metabolic process catabolic process cytolysis cellular localization cell growth multi-organism cellular process gene conversion at mating-type locus, DNA double-strand break formation nitrogen utilization menstrual cycle phase immune system development single organism reproductive process leukocyte mediated cytotoxicity locomotion involved in locomotory behavior acrosome reaction maintenance of cell number activation of immune response budding cell bud growth single-organism behavior spore germination ultradian rhythm FtsZ-dependent cytokinesis primary metabolic process abscission antibody-dependent cellular cytotoxicity response to inactivity response to activity P granule organization synaptic vesicle fusion to presynaptic active zone membrane primary ovarian follicle growth spermatid nucleus differentiation neurotransmitter secretion meiotic cell cycle process rhythmic behavior cellular response to stimulus activation of meiosis involved in egg activation female meiotic division cell cycle process carbon utilization peptide mating pheromone maturation involved in conjugation with cellular fusion preantral ovarian follicle growth carbohydrate utilization anatomical structure morphogenesis response to other organism cell separation after cytokinesis mycothiol-dependent detoxification detection of stimulus spermatogenesis, exchange of chromosomal proteins sperm chromatin condensation leukocyte migration ovarian cumulus expansion adhesion of symbiont to host gene conversion at mating-type locus, DNA repair synthesis leukocyte homeostasis killing of cells of other organism feeding behavior synaptic vesicle exocytosis response to abiotic stimulus cellular component organization pigmentation growth involved in symbiotic interaction response to estrogen cell wall organization or biogenesis hormone metabolic process behavioral response to nutrient intermicrovillar adhesion phenotypic switching directional locomotion cellular metabolic process response to biotic stimulus locomotory behavior cell motility chromosome localization to nuclear envelope involved in homologous chromosome segregation prevention of polyspermy spermatid nucleus elongation
cartilage condensation FtsZ-dependent cytokinesis preantral ovarian follicle growth
action approx
action find_reverse_tuple_counts
relation biological process
type biological process
type nutrient
action count
action filter_type
action find
entity hormone metabolic process
relation biological process
type biological process
[{'concept': 'nutrient'}, 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?f WHERE { { SELECT DISTINCT ( COUNT ( ?n ) AS ?c ) WHERE { resource:hormone_metabolic_process property:biological_process ?n . ?n rdf:type ontology:biological_process } } . FILTER ( ?e = ?c ) . { SELECT DISTINCT ?f ( COUNT ( ?h ) AS ?e ) WHERE { ?h rdf:type ontology:nutrient . ?f rdf:type ontology:biological_process . ?h property:biological_process ?f } GROUP BY ?f } }
[]
Logical Reasoning (All)
Logical|Intersection|Multiple_Relation
Q14860365 Q14851921
P682 P680
Q181394
USER
Which nutrients are a part of the biological process hormone metabolic process and have the molecular function nucleotide binding ?
AND((c(Q181394),P682,Q14851921), (c(Q181394),P680,Q14860365))
action filter_type
action intersection
action find_reverse
entity Q14851921
relation P682
action find_reverse
entity Q14860365
relation P680
type Q181394
{'AND': [[{'concept': 'Q181394'}, 'P682', 'Q14851921'], [{'concept': 'Q181394'}, 'P680', 'Q14860365']]}
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:Q181394 . ?u property:P682 resource:Q14851921 . ?u property:P680 resource:Q14860365 }
nucleotide binding hormone metabolic process
action filter_type
action intersection
action find_reverse
entity hormone metabolic process
relation biological process
action find_reverse
entity nucleotide binding
relation molecular function
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'biological process', 'hormone metabolic process'], [{'concept': 'nutrient'}, 'molecular function', 'nucleotide binding']]}
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:nutrient . ?u property:biological_process resource:hormone_metabolic_process . ?u property:molecular_function resource:nucleotide_binding }
[]
nutrient
Q21990597 Q21118769
SYSTEM
Scaffold attachment factor B1, Scaffold attachment factor B1
Q21990597 Q21118769
AND((c(Q181394),P682,Q14851921), (c(Q181394),P680,Q14860365))
action filter_type
action intersection
action find_reverse
entity Q14851921
relation P682
action find_reverse
entity Q14860365
relation P680
type Q181394
And [ANSWERS] are a part of the biological process hormone metabolic process and have the molecular function nucleotide binding
{'AND': [[{'concept': 'Q181394'}, 'P682', 'Q14851921'], [{'concept': 'Q181394'}, 'P680', 'Q14860365']]}
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:Q181394 . ?u property:P682 resource:Q14851921 . ?u property:P680 resource:Q14860365 }
Scaffold attachment factor B1 Scaffold attachment factor B1
And Scaffold attachment factor B1 and Scaffold attachment factor B1 are a part of the biological process hormone metabolic process and have the molecular function nucleotide binding
Scaffold attachment factor B1 Scaffold attachment factor B1
action filter_type
action intersection
action find_reverse
entity hormone metabolic process
relation biological process
action find_reverse
entity nucleotide binding
relation molecular function
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'biological process', 'hormone metabolic process'], [{'concept': 'nutrient'}, 'molecular function', 'nucleotide binding']]}
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:nutrient . ?u property:biological_process resource:hormone_metabolic_process . ?u property:molecular_function resource:nucleotide_binding }
[]
Clarification
Quantitative|Count|Logical operators|Indirect
P682
Q3249551 Q2996394
USER
How many processes or biological processes are that nutrient involved in ?
(Q21118769,P682,c(Q3249551)) (Q21118769,P682,c(Q2996394)) (Q21990597,P682,c(Q3249551)) (Q21990597,P682,c(Q2996394)) (Q21118769,P682,c(Q3249551)) (Q21118769,P682,c(Q2996394))
['Q21118769', 'P682', {'concept': 'Q3249551'}] ['Q21118769', 'P682', {'concept': 'Q2996394'}] ['Q21990597', 'P682', {'concept': 'Q3249551'}] ['Q21990597', 'P682', {'concept': 'Q2996394'}] ['Q21118769', 'P682', {'concept': 'Q3249551'}] ['Q21118769', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?x ) WHERE { { { resource:Q21990597 property:Q2996394 ?z } UNION { resource:Q21990597 property:Q2996394 ?y } UNION { resource:Q21990597 property:Q2996394 ?z } UNION { resource:Q21990597 property:Q2996394 ?y } UNION { resource:Q21990597 property:Q2996394 ?z } UNION { resource:Q21990597 property:Q2996394 ?y } } . ?z rdf:type ontology:Q619671 . ?y rdf:type ontology:Q2996394 }
['Scaffold attachment factor B1', 'biological process', {'concept': 'process'}] ['Scaffold attachment factor B1', 'biological process', {'concept': 'biological process'}] ['Scaffold attachment factor B1', 'biological process', {'concept': 'process'}] ['Scaffold attachment factor B1', 'biological process', {'concept': 'biological process'}] ['Scaffold attachment factor B1', 'biological process', {'concept': 'process'}] ['Scaffold attachment factor B1', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?x ) WHERE { { { resource:Scaffold_attachment_factor_B1 property:biological_process ?z } UNION { resource:Scaffold_attachment_factor_B1 property:biological_process ?y } UNION { resource:Scaffold_attachment_factor_B1 property:biological_process ?z } UNION { resource:Scaffold_attachment_factor_B1 property:biological_process ?y } UNION { resource:Scaffold_attachment_factor_B1 property:biological_process ?z } UNION { resource:Scaffold_attachment_factor_B1 property:biological_process ?y } } . ?z rdf:type ontology:process . ?y rdf:type ontology:biological_process }
[]
process biological process
Quantitative|Count|Mult. entity type|Clarification
Q21118769
SYSTEM
Did you mean Scaffold attachment factor B1 ?
[ANSWER]
SELECT DISTINCT ( COUNT ( ?z ) AS ?x ) WHERE { { { resource:Q21990597 property:Q2996394 ?z } UNION { resource:Q21990597 property:Q2996394 ?y } UNION { resource:Q21990597 property:Q2996394 ?z } UNION { resource:Q21990597 property:Q2996394 ?y } UNION { resource:Q21990597 property:Q2996394 ?z } UNION { resource:Q21990597 property:Q2996394 ?y } } . ?z rdf:type ontology:Q619671 . ?y rdf:type ontology:Q2996394 }
Did you mean Scaffold attachment factor B1 ?
Scaffold attachment factor B1
SELECT DISTINCT ( COUNT ( ?z ) AS ?x ) WHERE { { { resource:Scaffold_attachment_factor_B1 property:biological_process ?z } UNION { resource:Scaffold_attachment_factor_B1 property:biological_process ?y } UNION { resource:Scaffold_attachment_factor_B1 property:biological_process ?z } UNION { resource:Scaffold_attachment_factor_B1 property:biological_process ?y } UNION { resource:Scaffold_attachment_factor_B1 property:biological_process ?z } UNION { resource:Scaffold_attachment_factor_B1 property:biological_process ?y } } . ?z rdf:type ontology:process . ?y rdf:type ontology:biological_process }
[]
Quantitative Reasoning (Count) (All)
USER
Yes
(Q21118769,P682,c(Q3249551)) (Q21118769,P682,c(Q2996394)) (Q21990597,P682,c(Q3249551)) (Q21990597,P682,c(Q2996394)) (Q21118769,P682,c(Q3249551)) (Q21118769,P682,c(Q2996394))
['Q21118769', 'P682', {'concept': 'Q3249551'}] ['Q21118769', 'P682', {'concept': 'Q2996394'}] ['Q21990597', 'P682', {'concept': 'Q3249551'}] ['Q21990597', 'P682', {'concept': 'Q2996394'}] ['Q21118769', 'P682', {'concept': 'Q3249551'}] ['Q21118769', 'P682', {'concept': 'Q2996394'}]
['Scaffold attachment factor B1', 'biological process', {'concept': 'process'}] ['Scaffold attachment factor B1', 'biological process', {'concept': 'biological process'}] ['Scaffold attachment factor B1', 'biological process', {'concept': 'process'}] ['Scaffold attachment factor B1', 'biological process', {'concept': 'biological process'}] ['Scaffold attachment factor B1', 'biological process', {'concept': 'process'}] ['Scaffold attachment factor B1', 'biological process', {'concept': 'biological process'}]
[]
SYSTEM
2
Q14820058 Q14851921
(Q21118769,P682,c(Q3249551)) (Q21118769,P682,c(Q2996394)) (Q21990597,P682,c(Q3249551)) (Q21990597,P682,c(Q2996394)) (Q21118769,P682,c(Q3249551)) (Q21118769,P682,c(Q2996394))
[ANSWER]
['Q21118769', 'P682', {'concept': 'Q3249551'}] ['Q21118769', 'P682', {'concept': 'Q2996394'}] ['Q21990597', 'P682', {'concept': 'Q3249551'}] ['Q21990597', 'P682', {'concept': 'Q2996394'}] ['Q21118769', 'P682', {'concept': 'Q3249551'}] ['Q21118769', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?x ) WHERE { { { resource:Q21990597 property:Q2996394 ?z } UNION { resource:Q21990597 property:Q2996394 ?y } UNION { resource:Q21990597 property:Q2996394 ?z } UNION { resource:Q21990597 property:Q2996394 ?y } UNION { resource:Q21990597 property:Q2996394 ?z } UNION { resource:Q21990597 property:Q2996394 ?y } } . ?z rdf:type ontology:Q619671 . ?y rdf:type ontology:Q2996394 }
growth hormone metabolic process
2
['Scaffold attachment factor B1', 'biological process', {'concept': 'process'}] ['Scaffold attachment factor B1', 'biological process', {'concept': 'biological process'}] ['Scaffold attachment factor B1', 'biological process', {'concept': 'process'}] ['Scaffold attachment factor B1', 'biological process', {'concept': 'biological process'}] ['Scaffold attachment factor B1', 'biological process', {'concept': 'process'}] ['Scaffold attachment factor B1', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?x ) WHERE { { { resource:Scaffold_attachment_factor_B1 property:biological_process ?z } UNION { resource:Scaffold_attachment_factor_B1 property:biological_process ?y } UNION { resource:Scaffold_attachment_factor_B1 property:biological_process ?z } UNION { resource:Scaffold_attachment_factor_B1 property:biological_process ?y } UNION { resource:Scaffold_attachment_factor_B1 property:biological_process ?z } UNION { resource:Scaffold_attachment_factor_B1 property:biological_process ?y } } . ?z rdf:type ontology:process . ?y rdf:type ontology:biological_process }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21990597
P681
Q15989253
USER
What is a component of Scaffold attachment factor B1 ?
(Q21990597,P681,c(Q15989253))
action filter_type
action find
entity Q21990597
relation P681
type Q15989253
['Q21990597', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?g WHERE { resource:Q21990597 property:P681 ?g . ?g rdf:type ontology:Q15989253 }
Scaffold attachment factor B1
action filter_type
action find
entity Scaffold attachment factor B1
relation cell component
type part
['Scaffold attachment factor B1', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?g WHERE { resource:Scaffold_attachment_factor_B1 property:cell_component ?g . ?g rdf:type ontology:part }
[]
part
Q40260
SYSTEM
nucleus
Q40260
(Q21990597,P681,c(Q15989253))
action filter_type
action find
entity Q21990597
relation P681
type Q15989253
A component of Scaffold attachment factor B1 is the [ANSWER]
['Q21990597', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?g WHERE { resource:Q21990597 property:P681 ?g . ?g rdf:type ontology:Q15989253 }
nucleus
A component of Scaffold attachment factor B1 is the nucleus
nucleus
action filter_type
action find
entity Scaffold attachment factor B1
relation cell component
type part
['Scaffold attachment factor B1', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?g WHERE { resource:Scaffold_attachment_factor_B1 property:cell_component ?g . ?g rdf:type ontology:part }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q21495833
Q15989253
USER
And what about HHIP-like protein 1?
(Q21495833,P681,c(Q15989253))
action filter_type
action find
entity Q21495833
relation P681
type Q15989253
['Q21495833', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?b WHERE { resource:Q21495833 property:P681 ?b . ?b rdf:type ontology:Q15989253 }
HHIP-like protein 1
action filter_type
action find
entity HHIP-like protein 1
relation cell component
type part
['HHIP-like protein 1', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?b WHERE { resource:HHIP-like_protein_1 property:cell_component ?b . ?b rdf:type ontology:part }
[]
part
Q14645596 Q14349455
SYSTEM
extracellular region, membrane
Q14645596 Q14349455
(Q21495833,P681,c(Q15989253))
action filter_type
action find
entity Q21495833
relation P681
type Q15989253
[ANSWERS]
['Q21495833', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?b WHERE { resource:Q21495833 property:P681 ?b . ?b rdf:type ontology:Q15989253 }
extracellular region membrane
extracellular region membrane
action filter_type
action find
entity HHIP-like protein 1
relation cell component
type part
['HHIP-like protein 1', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?b WHERE { resource:HHIP-like_protein_1 property:cell_component ?b . ?b rdf:type ontology:part }
[]
Simple Question (Coreferenced)
Simple Question|Mult. Entity
Q14645596 Q14349455
P361
Q15989253
USER
Which parts are parts of those ones ?
(c(Q15989253),P361,Q14645596) (c(Q15989253),P361,Q14349455)
action filter_type
action find_reverse
entity prev_answer
relation P361
type Q15989253
[{'concept': 'Q15989253'}, 'P361', 'Q14645596'] [{'concept': 'Q15989253'}, 'P361', 'Q14349455']
SELECT DISTINCT ?g WHERE { ?g rdf:type ontology:Q15989253 . ?g property:P361 ?q . VALUES ( ?q ) { ( resource:Q14645596 ) ( resource:Q14349455 ) } }
extracellular region membrane
action filter_type
action find_reverse
entity prev_answer
relation part of
type part
[{'concept': 'part'}, 'part of', 'extracellular region'] [{'concept': 'part'}, 'part of', 'membrane']
SELECT DISTINCT ?g WHERE { ?g rdf:type ontology:part . ?g property:part_of ?q . VALUES ( ?q ) { ( resource:extracellular_region ) ( resource:membrane ) } }
[]
part
Q14865122 Q22327135
SYSTEM
extracellular region part, membrane part
Q14865122 Q22327135
(c(Q15989253),P361,Q14645596) (c(Q15989253),P361,Q14349455)
action filter_type
action find_reverse
entity prev_answer
relation P361
type Q15989253
[ANSWERS] are parts of those ones
[{'concept': 'Q15989253'}, 'P361', 'Q14645596'] [{'concept': 'Q15989253'}, 'P361', 'Q14349455']
SELECT DISTINCT ?g WHERE { ?g rdf:type ontology:Q15989253 . ?g property:P361 ?q . VALUES ( ?q ) { ( resource:Q14645596 ) ( resource:Q14349455 ) } }
extracellular region part membrane part
Extracellular region part and membrane part are parts of those ones
extracellular region part membrane part
action filter_type
action find_reverse
entity prev_answer
relation part of
type part
[{'concept': 'part'}, 'part of', 'extracellular region'] [{'concept': 'part'}, 'part of', 'membrane']
SELECT DISTINCT ?g WHERE { ?g rdf:type ontology:part . ?g property:part_of ?q . VALUES ( ?q ) { ( resource:extracellular_region ) ( resource:membrane ) } }
[]
Simple Question (Coreferenced)
Simple Question|Mult. Entity
Q14865122 Q22327135
P361
Q15989253
USER
Which parts are those ones a component of ?
(Q14865122,P361,c(Q15989253)) (Q22327135,P361,c(Q15989253))
action filter_type
action find
entity prev_answer
relation P361
type Q15989253
['Q14865122', 'P361', {'concept': 'Q15989253'}] ['Q22327135', 'P361', {'concept': 'Q15989253'}]
SELECT DISTINCT ?o WHERE { ?o rdf:type ontology:Q15989253 . ?n property:P361 ?o . VALUES ( ?n ) { ( resource:Q14865122 ) ( resource:Q22327135 ) } }
extracellular region part membrane part
action filter_type
action find
entity prev_answer
relation part of
type part
['extracellular region part', 'part of', {'concept': 'part'}] ['membrane part', 'part of', {'concept': 'part'}]
SELECT DISTINCT ?o WHERE { ?o rdf:type ontology:part . ?n property:part_of ?o . VALUES ( ?n ) { ( resource:extracellular_region_part ) ( resource:membrane_part ) } }
[]
part
Q14645596 Q14349455
SYSTEM
extracellular region, membrane
Q14645596 Q14349455
(Q14865122,P361,c(Q15989253)) (Q22327135,P361,c(Q15989253))
action filter_type
action find
entity prev_answer
relation P361
type Q15989253
The [ANSWERS] are those ones a component of
['Q14865122', 'P361', {'concept': 'Q15989253'}] ['Q22327135', 'P361', {'concept': 'Q15989253'}]
SELECT DISTINCT ?o WHERE { ?o rdf:type ontology:Q15989253 . ?n property:P361 ?o . VALUES ( ?n ) { ( resource:Q14865122 ) ( resource:Q22327135 ) } }
extracellular region membrane
The extracellular region and membrane are those ones a component of
extracellular region membrane
action filter_type
action find
entity prev_answer
relation part of
type part
['extracellular region part', 'part of', {'concept': 'part'}] ['membrane part', 'part of', {'concept': 'part'}]
SELECT DISTINCT ?o WHERE { ?o rdf:type ontology:part . ?n property:part_of ?o . VALUES ( ?n ) { ( resource:extracellular_region_part ) ( resource:membrane_part ) } }
[]