Simple Question (Direct)
Simple Question
Q21113060
P680
Q44424
USER
What represents the molecular function of Inactive carboxypeptidase-like protein X2 ?
(Q21113060,P680,c(Q44424))
action filter_type
action find
entity Q21113060
relation P680
type Q44424
['Q21113060', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?d WHERE { resource:Q21113060 property:P680 ?d . ?d rdf:type ontology:Q44424 }
Inactive carboxypeptidase-like protein X2
action filter_type
action find
entity Inactive carboxypeptidase-like protein X2
relation molecular function
type chemical bond
['Inactive carboxypeptidase-like protein X2', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?d WHERE { resource:Inactive_carboxypeptidase-like_protein_X2 property:molecular_function ?d . ?d rdf:type ontology:chemical_bond }
[]
chemical bond
Q14633865
SYSTEM
zinc ion binding
Q14633865
(Q21113060,P680,c(Q44424))
action filter_type
action find
entity Q21113060
relation P680
type Q44424
The [ANSWER] represents the molecular function of Inactive carboxypeptidase-like protein X2
['Q21113060', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?d WHERE { resource:Q21113060 property:P680 ?d . ?d rdf:type ontology:Q44424 }
zinc ion binding
The zinc ion binding represents the molecular function of Inactive carboxypeptidase-like protein X2
zinc ion binding
action filter_type
action find
entity Inactive carboxypeptidase-like protein X2
relation molecular function
type chemical bond
['Inactive carboxypeptidase-like protein X2', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?d WHERE { resource:Inactive_carboxypeptidase-like_protein_X2 property:molecular_function ?d . ?d rdf:type ontology:chemical_bond }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21113060
P681
Q5058355
USER
Which cellular components are components of Inactive carboxypeptidase-like protein X2 ?
(Q21113060,P681,c(Q5058355))
action filter_type
action find
entity Q21113060
relation P681
type Q5058355
['Q21113060', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?d WHERE { resource:Q21113060 property:P681 ?d . ?d rdf:type ontology:Q5058355 }
Inactive carboxypeptidase-like protein X2
action filter_type
action find
entity Inactive carboxypeptidase-like protein X2
relation cell component
type cellular component
['Inactive carboxypeptidase-like protein X2', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?d WHERE { resource:Inactive_carboxypeptidase-like_protein_X2 property:cell_component ?d . ?d rdf:type ontology:cellular_component }
[]
cellular component
Q2914458 Q193825
SYSTEM
extracellular space, extracellular matrix
Q2914458 Q193825
(Q21113060,P681,c(Q5058355))
action filter_type
action find
entity Q21113060
relation P681
type Q5058355
[ANSWERS] are components of Inactive carboxypeptidase-like protein X2
['Q21113060', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?d WHERE { resource:Q21113060 property:P681 ?d . ?d rdf:type ontology:Q5058355 }
extracellular space extracellular matrix
Extracellular space and extracellular matrix are components of Inactive carboxypeptidase-like protein X2
extracellular space extracellular matrix
action filter_type
action find
entity Inactive carboxypeptidase-like protein X2
relation cell component
type cellular component
['Inactive carboxypeptidase-like protein X2', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?d WHERE { resource:Inactive_carboxypeptidase-like_protein_X2 property:cell_component ?d . ?d rdf:type ontology:cellular_component }
[]
Simple Question (Ellipsis)
Incomplete|object parent is changed, subject and predicate remain same
Q21113060
Q15989253
USER
And which part?
(Q21113060,P681,c(Q15989253))
action filter_type
action find
entity Q21113060
relation P681
type Q15989253
['Q21113060', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?r WHERE { resource:Q21113060 property:P681 ?r . ?r rdf:type ontology:Q15989253 }
Inactive carboxypeptidase-like protein X2
action filter_type
action find
entity Inactive carboxypeptidase-like protein X2
relation cell component
type part
['Inactive carboxypeptidase-like protein X2', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?r WHERE { resource:Inactive_carboxypeptidase-like_protein_X2 property:cell_component ?r . ?r rdf:type ontology:part }
[]
part
Q14645596
SYSTEM
extracellular region
Q14645596
(Q21113060,P681,c(Q15989253))
action filter_type
action find
entity Q21113060
relation P681
type Q15989253
[ANSWER]
['Q21113060', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?r WHERE { resource:Q21113060 property:P681 ?r . ?r rdf:type ontology:Q15989253 }
extracellular region
extracellular region
action filter_type
action find
entity Inactive carboxypeptidase-like protein X2
relation cell component
type part
['Inactive carboxypeptidase-like protein X2', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?r WHERE { resource:Inactive_carboxypeptidase-like_protein_X2 property:cell_component ?r . ?r rdf:type ontology:part }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21113060
P688
Q863908
USER
What is the nucleic acid sequence that is encoded by Inactive carboxypeptidase-like protein X2 ?
(c(Q863908),P688,Q21113060)
action filter_type
action find_reverse
entity Q21113060
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q21113060']
SELECT DISTINCT ?g WHERE { ?g property:P688 resource:Q21113060 . ?g rdf:type ontology:Q863908 }
Inactive carboxypeptidase-like protein X2
action filter_type
action find_reverse
entity Inactive carboxypeptidase-like protein X2
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Inactive carboxypeptidase-like protein X2']
SELECT DISTINCT ?g WHERE { ?g property:encodes resource:Inactive_carboxypeptidase-like_protein_X2 . ?g rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18049358
SYSTEM
CPXM2
Q18049358
(c(Q863908),P688,Q21113060)
action filter_type
action find_reverse
entity Q21113060
relation P688
type Q863908
The nucleic acid sequence that is encoded by Inactive carboxypeptidase-like protein X2 is called [ANSWER]
[{'concept': 'Q863908'}, 'P688', 'Q21113060']
SELECT DISTINCT ?g WHERE { ?g property:P688 resource:Q21113060 . ?g rdf:type ontology:Q863908 }
CPXM2
The nucleic acid sequence that is encoded by Inactive carboxypeptidase-like protein X2 is called CPXM2
CPXM2
action filter_type
action find_reverse
entity Inactive carboxypeptidase-like protein X2
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Inactive carboxypeptidase-like protein X2']
SELECT DISTINCT ?g WHERE { ?g property:encodes resource:Inactive_carboxypeptidase-like_protein_X2 . ?g rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18049358
P684
Q863908
USER
Which nucleic acid sequence is an orthologous gene for that one ?
(Q18049358,P684,c(Q863908))
action filter_type
action find
entity Q18049358
relation P684
type Q863908
['Q18049358', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?m WHERE { resource:Q18049358 property:P684 ?m . ?m rdf:type ontology:Q863908 }
CPXM2
action filter_type
action find
entity CPXM2
relation ortholog
type nucleic acid sequence
['CPXM2', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?m WHERE { resource:CPXM2 property:ortholog ?m . ?m rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18258235
SYSTEM
Cpxm2
Q18258235
(Q18049358,P684,c(Q863908))
action filter_type
action find
entity Q18049358
relation P684
type Q863908
[ANSWER] is an orthologous gene for that one
['Q18049358', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?m WHERE { resource:Q18049358 property:P684 ?m . ?m rdf:type ontology:Q863908 }
Cpxm2
Cpxm2 is an orthologous gene for that one
Cpxm2
action filter_type
action find
entity CPXM2
relation ortholog
type nucleic acid sequence
['CPXM2', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?m WHERE { resource:CPXM2 property:ortholog ?m . ?m rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q18258235 Q23588335
P702
Q181394
USER
Is 50S ribosomal protein L33    MAB_3899c encoded by that nucleic acid sequence ?
(Q23588335,P702,Q18258235)
action is_in
entity Q23588335
action find
entity Q18258235
relation P702
['Q23588335', 'P702', 'Q18258235']
ASK WHERE { resource:Q18258235 property:P702 resource:Q23588335 }
Cpxm2 50S ribosomal protein L33    MAB_3899c
action is_in
entity 50S ribosomal protein L33    MAB_3899c
action find
entity Cpxm2
relation encoded by
['50S ribosomal protein L33    MAB_3899c', 'encoded by', 'Cpxm2']
ASK WHERE { resource:Cpxm2 property:encoded_by resource:50S_ribosomal_protein_L33____MAB_3899c }
[]
nutrient
SYSTEM
NO
(Q23588335,P702,Q18258235)
action is_in
entity Q23588335
action find
entity Q18258235
relation P702
[ANSWER]
['Q23588335', 'P702', 'Q18258235']
ASK WHERE { resource:Q18258235 property:P702 resource:Q23588335 }
No
action is_in
entity 50S ribosomal protein L33    MAB_3899c
action find
entity Cpxm2
relation encoded by
['50S ribosomal protein L33    MAB_3899c', 'encoded by', 'Cpxm2']
ASK WHERE { resource:Cpxm2 property:encoded_by resource:50S_ribosomal_protein_L33____MAB_3899c }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q18049358 Q23609364
P688
Q181394
USER
Is CPXM2 an encoding of binding-protein-dependent transport system inner membrane protein    Smed_3168 ?
(Q18049358,P688,Q23609364)
action is_in
entity Q23609364
action find
entity Q18049358
relation P688
['Q18049358', 'P688', 'Q23609364']
ASK WHERE { resource:Q18049358 property:P688 resource:Q23609364 }
CPXM2 binding-protein-dependent transport system inner membrane protein    Smed_3168
action is_in
entity binding-protein-dependent transport system inner membrane protein    Smed_3168
action find
entity CPXM2
relation encodes
['CPXM2', 'encodes', 'binding-protein-dependent transport system inner membrane protein    Smed_3168']
ASK WHERE { resource:CPXM2 property:encodes resource:binding-protein-dependent_transport_system_inner_membrane_protein____Smed_3168 }
[]
nutrient
SYSTEM
NO
(Q18049358,P688,Q23609364)
action is_in
entity Q23609364
action find
entity Q18049358
relation P688
[ANSWER]
['Q18049358', 'P688', 'Q23609364']
ASK WHERE { resource:Q18049358 property:P688 resource:Q23609364 }
No
action is_in
entity binding-protein-dependent transport system inner membrane protein    Smed_3168
action find
entity CPXM2
relation encodes
['CPXM2', 'encodes', 'binding-protein-dependent transport system inner membrane protein    Smed_3168']
ASK WHERE { resource:CPXM2 property:encodes resource:binding-protein-dependent_transport_system_inner_membrane_protein____Smed_3168 }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q21113060 Q18049358
P702
Q863908
USER
Does CPXM2 gene encodes Inactive carboxypeptidase-like protein X2 ?
(Q21113060,P702,Q18049358)
action is_in
entity Q18049358
action find
entity Q21113060
relation P702
['Q21113060', 'P702', 'Q18049358']
ASK WHERE { resource:Q21113060 property:P702 resource:Q18049358 }
Inactive carboxypeptidase-like protein X2 CPXM2
action is_in
entity CPXM2
action find
entity Inactive carboxypeptidase-like protein X2
relation encoded by
['Inactive carboxypeptidase-like protein X2', 'encoded by', 'CPXM2']
ASK WHERE { resource:Inactive_carboxypeptidase-like_protein_X2 property:encoded_by resource:CPXM2 }
[]
nucleic acid sequence
SYSTEM
YES
(Q21113060,P702,Q18049358)
action is_in
entity Q18049358
action find
entity Q21113060
relation P702
[ANSWER]
['Q21113060', 'P702', 'Q18049358']
ASK WHERE { resource:Q21113060 property:P702 resource:Q18049358 }
Yes
action is_in
entity CPXM2
action find
entity Inactive carboxypeptidase-like protein X2
relation encoded by
['Inactive carboxypeptidase-like protein X2', 'encoded by', 'CPXM2']
ASK WHERE { resource:Inactive_carboxypeptidase-like_protein_X2 property:encoded_by resource:CPXM2 }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q24103359 Q21113060
P702
Q863908
USER
Which nucleic acid sequences genes encode Inactive carboxypeptidase-like protein X2 or hypothetical protein    NGR_b14890 ?
OR((Q21113060,P702,c(Q863908)), (Q24103359,P702,c(Q863908)))
action filter_type
action union
action find
entity Q21113060
relation P702
action find
entity Q24103359
relation P702
type Q863908
{'OR': [['Q21113060', 'P702', {'concept': 'Q863908'}], ['Q24103359', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?v WHERE { { ?h property:P702 ?v . VALUES ( ?h ) { ( resource:Q21113060 ) ( resource:Q24103359 ) } } . ?v rdf:type ontology:Q863908 }
hypothetical protein    NGR_b14890 Inactive carboxypeptidase-like protein X2
action filter_type
action union
action find
entity Inactive carboxypeptidase-like protein X2
relation encoded by
action find
entity hypothetical protein    NGR_b14890
relation encoded by
type nucleic acid sequence
{'OR': [['Inactive carboxypeptidase-like protein X2', 'encoded by', {'concept': 'nucleic acid sequence'}], ['hypothetical protein    NGR_b14890', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?v WHERE { { ?h property:encoded_by ?v . VALUES ( ?h ) { ( resource:Inactive_carboxypeptidase-like_protein_X2 ) ( resource:hypothetical_protein____NGR_b14890 ) } } . ?v rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23319098 Q18049358
SYSTEM
hypothetical protein    NGR_b14890, CPXM2
Q23319098 Q18049358
OR((Q21113060,P702,c(Q863908)), (Q24103359,P702,c(Q863908)))
action filter_type
action union
action find
entity Q21113060
relation P702
action find
entity Q24103359
relation P702
type Q863908
[ANSWERS]
{'OR': [['Q21113060', 'P702', {'concept': 'Q863908'}], ['Q24103359', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?v WHERE { { ?h property:P702 ?v . VALUES ( ?h ) { ( resource:Q21113060 ) ( resource:Q24103359 ) } } . ?v rdf:type ontology:Q863908 }
hypothetical protein    NGR_b14890 CPXM2
Hypothetical protein NGR b14890 and CPXM2 encode Inactive carboxypeptidase-like protein X2 or hypothetical protein NGR_b14890
hypothetical protein    NGR_b14890 CPXM2
action filter_type
action union
action find
entity Inactive carboxypeptidase-like protein X2
relation encoded by
action find
entity hypothetical protein    NGR_b14890
relation encoded by
type nucleic acid sequence
{'OR': [['Inactive carboxypeptidase-like protein X2', 'encoded by', {'concept': 'nucleic acid sequence'}], ['hypothetical protein    NGR_b14890', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?v WHERE { { ?h property:encoded_by ?v . VALUES ( ?h ) { ( resource:Inactive_carboxypeptidase-like_protein_X2 ) ( resource:hypothetical_protein____NGR_b14890 ) } } . ?v rdf:type ontology:nucleic_acid_sequence }
[]
Clarification
Quantitative|Count|Single entity type|Indirect
P688
Q181394
USER
How many nutrients are encoded by that nucleic acid sequence ?
(Q18049358,P688,c(Q181394))
['Q18049358', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { resource:Q24597554 property:P688 ?z . ?z rdf:type ontology:Q181394 }
['CPXM2', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { resource:CPXM2 property:encodes ?z . ?z rdf:type ontology:nutrient }
[]
nutrient
Quantitative|Count|Single entity type|Clarification
Q23319098
SYSTEM
Did you mean hypothetical protein    NGR_b14890 ?
(Q23319098,P688,c(Q181394)) (Q18049358,P688,c(Q181394))
[ANSWER]
['Q23319098', 'P688', {'concept': 'Q181394'}] ['Q18049358', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { resource:Q24597554 property:P688 ?z . ?z rdf:type ontology:Q181394 }
Did you mean hypothetical protein    NGR_b14890 ?
hypothetical protein    NGR_b14890
['hypothetical protein    NGR_b14890', 'encodes', {'concept': 'nutrient'}] ['CPXM2', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { resource:CPXM2 property:encodes ?z . ?z rdf:type ontology:nutrient }
[]
Quantitative Reasoning (Count) (All)
USER
No, I meant CPXM2. Could you tell me the answer for that?
(Q18049358,P688,c(Q181394))
Q18049358
['Q18049358', 'P688', {'concept': 'Q181394'}]
['CPXM2', 'encodes', {'concept': 'nutrient'}]
[]
SYSTEM
1
Q21113060
(Q18049358,P688,c(Q181394))
[ANSWER]
['Q18049358', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { resource:Q24597554 property:P688 ?z . ?z rdf:type ontology:Q181394 }
Inactive carboxypeptidase-like protein X2
1
['CPXM2', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { resource:CPXM2 property:encodes ?z . ?z rdf:type ontology:nutrient }
[]