Simple Question (Direct)
Simple Question
Q23054334
P703
Q631147
USER
Which taxon is putative sodium/sulfate symporter    RSP_0656 a part of ?
(Q23054334,P703,c(Q631147))
action filter_type
action find
entity Q23054334
relation P703
type Q631147
['Q23054334', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?q WHERE { resource:Q23054334 property:P703 ?q . ?q rdf:type ontology:Q631147 }
putative sodium/sulfate symporter    RSP_0656
action filter_type
action find
entity putative sodium/sulfate symporter    RSP_0656
relation found in taxon
type infraspecific name
['putative sodium/sulfate symporter    RSP_0656', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?q WHERE { resource:putative_sodium/sulfate_symporter____RSP_0656 property:found_in_taxon ?q . ?q rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102953
SYSTEM
Rhodobacter sphaeroides 2.4.1
Q21102953
(Q23054334,P703,c(Q631147))
action filter_type
action find
entity Q23054334
relation P703
type Q631147
[ANSWER] is putative sodium/sulfate symporter RSP_0656 a part of
['Q23054334', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?q WHERE { resource:Q23054334 property:P703 ?q . ?q rdf:type ontology:Q631147 }
Rhodobacter sphaeroides 2.4.1
Rhodobacter sphaeroides 2.4.1 is putative sodium/sulfate symporter RSP_0656 a part of
Rhodobacter sphaeroides 2.4.1
action filter_type
action find
entity putative sodium/sulfate symporter    RSP_0656
relation found in taxon
type infraspecific name
['putative sodium/sulfate symporter    RSP_0656', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?q WHERE { resource:putative_sodium/sulfate_symporter____RSP_0656 property:found_in_taxon ?q . ?q rdf:type ontology:infraspecific_name }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23054334
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(c(Q863908),P688,Q21102953)
action filter_type
action find_reverse
entity Q23054334
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q21102953']
SELECT DISTINCT ?p WHERE { ?p property:P688 resource:Q23054334 . ?p rdf:type ontology:Q863908 }
putative sodium/sulfate symporter    RSP_0656
action filter_type
action find_reverse
entity putative sodium/sulfate symporter    RSP_0656
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Rhodobacter sphaeroides 2.4.1']
SELECT DISTINCT ?p WHERE { ?p property:encodes resource:putative_sodium/sulfate_symporter____RSP_0656 . ?p rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23031820
SYSTEM
putative sodium/sulfate symporter    RSP_0656
Q23031820
(c(Q863908),P688,Q21102953)
action filter_type
action find_reverse
entity Q23054334
relation P688
type Q863908
Putative sodium/sulfate symporter RSP 0656 encodes that nutrient
[{'concept': 'Q863908'}, 'P688', 'Q21102953']
SELECT DISTINCT ?p WHERE { ?p property:P688 resource:Q23054334 . ?p rdf:type ontology:Q863908 }
putative sodium/sulfate symporter    RSP_0656
Putative sodium/sulfate symporter RSP 0656 encodes that nutrient
putative sodium/sulfate symporter    RSP_0656
action filter_type
action find_reverse
entity putative sodium/sulfate symporter    RSP_0656
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Rhodobacter sphaeroides 2.4.1']
SELECT DISTINCT ?p WHERE { ?p property:encodes resource:putative_sodium/sulfate_symporter____RSP_0656 . ?p rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, subject is indirect
Q23031820 Q23054334
P688
Q181394
USER
Is that nucleic acid sequence an encoding of putative sodium/sulfate symporter    RSP_0656 ?
(Q23031820,P688,Q23054334)
action is_in
entity Q23054334
action find
entity Q23031820
relation P688
['Q23031820', 'P688', 'Q23054334']
ASK WHERE { resource:Q23031820 property:P688 resource:Q23054334 }
putative sodium/sulfate symporter    RSP_0656 putative sodium/sulfate symporter    RSP_0656
action is_in
entity putative sodium/sulfate symporter    RSP_0656
action find
entity putative sodium/sulfate symporter    RSP_0656
relation encodes
['putative sodium/sulfate symporter    RSP_0656', 'encodes', 'putative sodium/sulfate symporter    RSP_0656']
ASK WHERE { resource:putative_sodium/sulfate_symporter____RSP_0656 property:encodes resource:putative_sodium/sulfate_symporter____RSP_0656 }
[]
nutrient
SYSTEM
YES
(Q23031820,P688,Q23054334)
action is_in
entity Q23054334
action find
entity Q23031820
relation P688
[ANSWER]
['Q23031820', 'P688', 'Q23054334']
ASK WHERE { resource:Q23031820 property:P688 resource:Q23054334 }
Yes
action is_in
entity putative sodium/sulfate symporter    RSP_0656
action find
entity putative sodium/sulfate symporter    RSP_0656
relation encodes
['putative sodium/sulfate symporter    RSP_0656', 'encodes', 'putative sodium/sulfate symporter    RSP_0656']
ASK WHERE { resource:putative_sodium/sulfate_symporter____RSP_0656 property:encodes resource:putative_sodium/sulfate_symporter____RSP_0656 }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23031820
P702
Q181394
USER
What gene does that nucleic acid sequence encode ?
action filter_type
action find_reverse
entity Q23031820
relation P702
type Q181394
SELECT DISTINCT ?m WHERE { ?m property:P702 resource:Q23031820 . ?m rdf:type ontology:Q181394 }
putative sodium/sulfate symporter    RSP_0656
action filter_type
action find_reverse
entity putative sodium/sulfate symporter    RSP_0656
relation encoded by
type nutrient
SELECT DISTINCT ?m WHERE { ?m property:encoded_by resource:putative_sodium/sulfate_symporter____RSP_0656 . ?m rdf:type ontology:nutrient }
[]
nutrient
Q23054334
SYSTEM
putative sodium/sulfate symporter    RSP_0656
Q23054334
action filter_type
action find_reverse
entity Q23031820
relation P702
type Q181394
That nucleic acid sequence encodes a putative sodium/sulfate symporter RSP 0656
SELECT DISTINCT ?m WHERE { ?m property:P702 resource:Q23031820 . ?m rdf:type ontology:Q181394 }
putative sodium/sulfate symporter    RSP_0656
That nucleic acid sequence encodes a putative sodium/sulfate symporter RSP 0656
putative sodium/sulfate symporter    RSP_0656
action filter_type
action find_reverse
entity putative sodium/sulfate symporter    RSP_0656
relation encoded by
type nutrient
SELECT DISTINCT ?m WHERE { ?m property:encoded_by resource:putative_sodium/sulfate_symporter____RSP_0656 . ?m rdf:type ontology:nutrient }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q17908052 Q23031820
P688
Q181394
USER
Which nutrients do putative sodium/sulfate symporter    RSP_0656 or COL6A2 encode ?
OR((Q23031820,P688,c(Q181394)), (Q17908052,P688,c(Q181394)))
action filter_type
action union
action find
entity Q23031820
relation P688
action find
entity Q17908052
relation P688
type Q181394
{'OR': [['Q23031820', 'P688', {'concept': 'Q181394'}], ['Q17908052', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?u WHERE { { VALUES ( ?j ) { ( resource:Q23031820 ) ( resource:Q17908052 ) } . ?j property:P688 ?u } . ?u rdf:type ontology:Q181394 }
COL6A2 putative sodium/sulfate symporter    RSP_0656
action filter_type
action union
action find
entity putative sodium/sulfate symporter    RSP_0656
relation encodes
action find
entity COL6A2
relation encodes
type nutrient
{'OR': [['putative sodium/sulfate symporter    RSP_0656', 'encodes', {'concept': 'nutrient'}], ['COL6A2', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?u WHERE { { VALUES ( ?j ) { ( resource:putative_sodium/sulfate_symporter____RSP_0656 ) ( resource:COL6A2 ) } . ?j property:encodes ?u } . ?u rdf:type ontology:nutrient }
[]
nutrient
Q21102483 Q23054334
SYSTEM
Collagen alpha-2(VI) chain, putative sodium/sulfate symporter    RSP_0656
Q21102483 Q23054334
OR((Q23031820,P688,c(Q181394)), (Q17908052,P688,c(Q181394)))
action filter_type
action union
action find
entity Q23031820
relation P688
action find
entity Q17908052
relation P688
type Q181394
[ANSWERS]
{'OR': [['Q23031820', 'P688', {'concept': 'Q181394'}], ['Q17908052', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?u WHERE { { VALUES ( ?j ) { ( resource:Q23031820 ) ( resource:Q17908052 ) } . ?j property:P688 ?u } . ?u rdf:type ontology:Q181394 }
Collagen alpha-2(VI) chain putative sodium/sulfate symporter    RSP_0656
Collagen alpha-2(VI) chain and putative sodium/sulfate symporter RSP 0656 putative sodium/sulfate symporter RSP_0656 or COL6A2 encode
Collagen alpha-2(VI) chain putative sodium/sulfate symporter    RSP_0656
action filter_type
action union
action find
entity putative sodium/sulfate symporter    RSP_0656
relation encodes
action find
entity COL6A2
relation encodes
type nutrient
{'OR': [['putative sodium/sulfate symporter    RSP_0656', 'encodes', {'concept': 'nutrient'}], ['COL6A2', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?u WHERE { { VALUES ( ?j ) { ( resource:putative_sodium/sulfate_symporter____RSP_0656 ) ( resource:COL6A2 ) } . ?j property:encodes ?u } . ?u rdf:type ontology:nutrient }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q18038297 Q17908052
P702
Q181394
USER
Which nutrients are encoded by COL6A2 or ITGB1BP2 ?
OR((c(Q181394),P702,Q17908052), (c(Q181394),P702,Q18038297))
action filter_type
action union
action find_reverse
entity Q17908052
relation P702
action find_reverse
entity Q18038297
relation P702
type Q181394
{'OR': [[{'concept': 'Q181394'}, 'P702', 'Q17908052'], [{'concept': 'Q181394'}, 'P702', 'Q18038297']]}
SELECT DISTINCT ?p WHERE { ?p rdf:type ontology:Q181394 . { VALUES ( ?s ) { ( resource:Q17908052 ) ( resource:Q18038297 ) } . ?p property:P702 ?s } }
ITGB1BP2 COL6A2
action filter_type
action union
action find_reverse
entity COL6A2
relation encoded by
action find_reverse
entity ITGB1BP2
relation encoded by
type nutrient
{'OR': [[{'concept': 'nutrient'}, 'encoded by', 'COL6A2'], [{'concept': 'nutrient'}, 'encoded by', 'ITGB1BP2']]}
SELECT DISTINCT ?p WHERE { ?p rdf:type ontology:nutrient . { VALUES ( ?s ) { ( resource:COL6A2 ) ( resource:ITGB1BP2 ) } . ?p property:encoded_by ?s } }
[]
nutrient
Q21102483 Q21121507
SYSTEM
Collagen alpha-2(VI) chain, Integrin beta-1-binding protein 2
Q21102483 Q21121507
OR((c(Q181394),P702,Q17908052), (c(Q181394),P702,Q18038297))
action filter_type
action union
action find_reverse
entity Q17908052
relation P702
action find_reverse
entity Q18038297
relation P702
type Q181394
The [ANSWERS] are encoded by COL6A2 or ITGB1BP2
{'OR': [[{'concept': 'Q181394'}, 'P702', 'Q17908052'], [{'concept': 'Q181394'}, 'P702', 'Q18038297']]}
SELECT DISTINCT ?p WHERE { ?p rdf:type ontology:Q181394 . { VALUES ( ?s ) { ( resource:Q17908052 ) ( resource:Q18038297 ) } . ?p property:P702 ?s } }
Collagen alpha-2(VI) chain Integrin beta-1-binding protein 2
The Collagen alpha-2(VI) chain and Integrin beta-1-binding protein 2 are encoded by COL6A2 or ITGB1BP2
Collagen alpha-2(VI) chain Integrin beta-1-binding protein 2
action filter_type
action union
action find_reverse
entity COL6A2
relation encoded by
action find_reverse
entity ITGB1BP2
relation encoded by
type nutrient
{'OR': [[{'concept': 'nutrient'}, 'encoded by', 'COL6A2'], [{'concept': 'nutrient'}, 'encoded by', 'ITGB1BP2']]}
SELECT DISTINCT ?p WHERE { ?p rdf:type ontology:nutrient . { VALUES ( ?s ) { ( resource:COL6A2 ) ( resource:ITGB1BP2 ) } . ?p property:encoded_by ?s } }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q18038297
P684
Q863908
USER
Which nucleic acid sequence is ITGB1BP2 an orthlogous gene of ?
(c(Q863908),P684,Q21102483) (c(Q863908),P684,Q21121507)
action filter_type
action find
entity Q18038297
relation P684
type Q863908
[{'concept': 'Q863908'}, 'P684', 'Q21102483'] [{'concept': 'Q863908'}, 'P684', 'Q21121507']
SELECT DISTINCT ?d WHERE { resource:Q18038297 property:P684 ?d . ?d rdf:type ontology:Q863908 }
ITGB1BP2
action filter_type
action find
entity ITGB1BP2
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'Collagen alpha-2(VI) chain'] [{'concept': 'nucleic acid sequence'}, 'ortholog', 'Integrin beta-1-binding protein 2']
SELECT DISTINCT ?d WHERE { resource:ITGB1BP2 property:ortholog ?d . ?d rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18255795
SYSTEM
Itgb1bp2
Q18255795
(c(Q863908),P684,Q21102483) (c(Q863908),P684,Q21121507)
action filter_type
action find
entity Q18038297
relation P684
type Q863908
[ANSWER] is ITGB1BP2 an orthlogous gene of
[{'concept': 'Q863908'}, 'P684', 'Q21102483'] [{'concept': 'Q863908'}, 'P684', 'Q21121507']
SELECT DISTINCT ?d WHERE { resource:Q18038297 property:P684 ?d . ?d rdf:type ontology:Q863908 }
Itgb1bp2
Itgb1bp2 is ITGB1BP2 an orthlogous gene of
Itgb1bp2
action filter_type
action find
entity ITGB1BP2
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'Collagen alpha-2(VI) chain'] [{'concept': 'nucleic acid sequence'}, 'ortholog', 'Integrin beta-1-binding protein 2']
SELECT DISTINCT ?d WHERE { resource:ITGB1BP2 property:ortholog ?d . ?d rdf:type ontology:nucleic_acid_sequence }
[]