Simple Question (Direct)
Simple Question
Q23506603
P702
Q863908
USER
What encodes dCMP deaminase    L155044 ?
(Q23506603,P702,c(Q863908))
action filter_type
action find
entity Q23506603
relation P702
type Q863908
['Q23506603', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?o WHERE { resource:Q23506603 property:P702 ?o . ?o rdf:type ontology:Q863908 }
dCMP deaminase    L155044
action filter_type
action find
entity dCMP deaminase    L155044
relation encoded by
type nucleic acid sequence
['dCMP deaminase    L155044', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?o WHERE { resource:dCMP_deaminase____L155044 property:encoded_by ?o . ?o rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23185294
SYSTEM
dCMP deaminase    L155044
Q23185294
(Q23506603,P702,c(Q863908))
action filter_type
action find
entity Q23506603
relation P702
type Q863908
DCMP deaminase L155044 encodes dCMP deaminase L155044
['Q23506603', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?o WHERE { resource:Q23506603 property:P702 ?o . ?o rdf:type ontology:Q863908 }
dCMP deaminase    L155044
DCMP deaminase L155044 encodes dCMP deaminase L155044
dCMP deaminase    L155044
action filter_type
action find
entity dCMP deaminase    L155044
relation encoded by
type nucleic acid sequence
['dCMP deaminase    L155044', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?o WHERE { resource:dCMP_deaminase____L155044 property:encoded_by ?o . ?o rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23185294
P703
Q631147
USER
What is the taxon to which that nucleic acid sequence belongs to ?
(Q23185294,P703,c(Q631147))
action filter_type
action find
entity Q23185294
relation P703
type Q631147
['Q23185294', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?p WHERE { resource:Q23185294 property:P703 ?p . ?p rdf:type ontology:Q631147 }
dCMP deaminase    L155044
action filter_type
action find
entity dCMP deaminase    L155044
relation found in taxon
type infraspecific name
['dCMP deaminase    L155044', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?p WHERE { resource:dCMP_deaminase____L155044 property:found_in_taxon ?p . ?p rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102967
SYSTEM
Lactococcus lactis subsp. lactis Il1403
Q21102967
(Q23185294,P703,c(Q631147))
action filter_type
action find
entity Q23185294
relation P703
type Q631147
[ANSWER]
['Q23185294', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?p WHERE { resource:Q23185294 property:P703 ?p . ?p rdf:type ontology:Q631147 }
Lactococcus lactis subsp. lactis Il1403
Lactococcus lactis subsp. lactis Il1403
Lactococcus lactis subsp. lactis Il1403
action filter_type
action find
entity dCMP deaminase    L155044
relation found in taxon
type infraspecific name
['dCMP deaminase    L155044', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?p WHERE { resource:dCMP_deaminase____L155044 property:found_in_taxon ?p . ?p rdf:type ontology:infraspecific_name }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q21102967 Q23508215
P703
Q181394
USER
Is transcriptional regulator    L49937 found in the taxon that infraspecific name ?
(Q23508215,P703,Q21102967)
action is_in
entity Q21102967
action find
entity Q23508215
relation P703
['Q23508215', 'P703', 'Q21102967']
ASK WHERE { resource:Q23508215 property:P703 resource:Q21102967 }
Lactococcus lactis subsp. lactis Il1403 transcriptional regulator    L49937
action is_in
entity Lactococcus lactis subsp. lactis Il1403
action find
entity transcriptional regulator    L49937
relation found in taxon
['transcriptional regulator    L49937', 'found in taxon', 'Lactococcus lactis subsp. lactis Il1403']
ASK WHERE { resource:transcriptional_regulator____L49937 property:found_in_taxon resource:Lactococcus_lactis_subsp._lactis_Il1403 }
[]
nutrient
SYSTEM
YES
(Q23508215,P703,Q21102967)
action is_in
entity Q21102967
action find
entity Q23508215
relation P703
[ANSWER]
['Q23508215', 'P703', 'Q21102967']
ASK WHERE { resource:Q23508215 property:P703 resource:Q21102967 }
Yes
action is_in
entity Lactococcus lactis subsp. lactis Il1403
action find
entity transcriptional regulator    L49937
relation found in taxon
['transcriptional regulator    L49937', 'found in taxon', 'Lactococcus lactis subsp. lactis Il1403']
ASK WHERE { resource:transcriptional_regulator____L49937 property:found_in_taxon resource:Lactococcus_lactis_subsp._lactis_Il1403 }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23185294
P688
Q181394
USER
What does dCMP deaminase    L155044 encode ?
(Q23185294,P688,c(Q181394))
action filter_type
action find
entity Q23185294
relation P688
type Q181394
['Q23185294', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?w WHERE { resource:Q23185294 property:P688 ?w . ?w rdf:type ontology:Q181394 }
dCMP deaminase    L155044
action filter_type
action find
entity dCMP deaminase    L155044
relation encodes
type nutrient
['dCMP deaminase    L155044', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?w WHERE { resource:dCMP_deaminase____L155044 property:encodes ?w . ?w rdf:type ontology:nutrient }
[]
nutrient
Q23506603
SYSTEM
dCMP deaminase    L155044
Q23506603
(Q23185294,P688,c(Q181394))
action filter_type
action find
entity Q23185294
relation P688
type Q181394
DCMP deaminase L155044 encodes dCMP deaminase L155044
['Q23185294', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?w WHERE { resource:Q23185294 property:P688 ?w . ?w rdf:type ontology:Q181394 }
dCMP deaminase    L155044
DCMP deaminase L155044 encodes dCMP deaminase L155044
dCMP deaminase    L155044
action filter_type
action find
entity dCMP deaminase    L155044
relation encodes
type nutrient
['dCMP deaminase    L155044', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?w WHERE { resource:dCMP_deaminase____L155044 property:encodes ?w . ?w rdf:type ontology:nutrient }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23506603
P680
Q44424
USER
Which the chemical bonds that represents the molecular function of that nutrient ?
(Q23506603,P680,c(Q44424))
action filter_type
action find
entity Q23506603
relation P680
type Q44424
['Q23506603', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?y WHERE { resource:Q23506603 property:P680 ?y . ?y rdf:type ontology:Q44424 }
dCMP deaminase    L155044
action filter_type
action find
entity dCMP deaminase    L155044
relation molecular function
type chemical bond
['dCMP deaminase    L155044', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?y WHERE { resource:dCMP_deaminase____L155044 property:molecular_function ?y . ?y rdf:type ontology:chemical_bond }
[]
chemical bond
Q14633865 Q13667380
SYSTEM
zinc ion binding, metal ion binding
Q14633865 Q13667380
(Q23506603,P680,c(Q44424))
action filter_type
action find
entity Q23506603
relation P680
type Q44424
Represents The [ANSWERS]
['Q23506603', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?y WHERE { resource:Q23506603 property:P680 ?y . ?y rdf:type ontology:Q44424 }
zinc ion binding metal ion binding
Represents The zinc ion binding and metal ion binding
zinc ion binding metal ion binding
action filter_type
action find
entity dCMP deaminase    L155044
relation molecular function
type chemical bond
['dCMP deaminase    L155044', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?y WHERE { resource:dCMP_deaminase____L155044 property:molecular_function ?y . ?y rdf:type ontology:chemical_bond }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q22317310
Q44424
USER
And also tell me about hypothetical protein    PP_3897?
(Q22317310,P680,c(Q44424))
action filter_type
action find
entity Q22317310
relation P680
type Q44424
['Q22317310', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?g WHERE { resource:Q22317310 property:P680 ?g . ?g rdf:type ontology:Q44424 }
hypothetical protein    PP_3897
action filter_type
action find
entity hypothetical protein    PP_3897
relation molecular function
type chemical bond
['hypothetical protein    PP_3897', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?g WHERE { resource:hypothetical_protein____PP_3897 property:molecular_function ?g . ?g rdf:type ontology:chemical_bond }
[]
chemical bond
Q14633865
SYSTEM
zinc ion binding
Q14633865
(Q22317310,P680,c(Q44424))
action filter_type
action find
entity Q22317310
relation P680
type Q44424
[ANSWER]
['Q22317310', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?g WHERE { resource:Q22317310 property:P680 ?g . ?g rdf:type ontology:Q44424 }
zinc ion binding
zinc ion binding
action filter_type
action find
entity hypothetical protein    PP_3897
relation molecular function
type chemical bond
['hypothetical protein    PP_3897', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?g WHERE { resource:hypothetical_protein____PP_3897 property:molecular_function ?g . ?g rdf:type ontology:chemical_bond }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q14633865 Q24125343
P680
Q181394
USER
Is cytochrome C    BP1580 the gene that has that chemical bond as the molecular function ?
(Q24125343,P680,Q14633865)
action is_in
entity Q24125343
action find
entity Q14633865
relation P680
['Q24125343', 'P680', 'Q14633865']
ASK WHERE { resource:Q14633865 property:P680 resource:Q24125343 }
zinc ion binding cytochrome C    BP1580
action is_in
entity cytochrome C    BP1580
action find
entity zinc ion binding
relation molecular function
['cytochrome C    BP1580', 'molecular function', 'zinc ion binding']
ASK WHERE { resource:zinc_ion_binding property:molecular_function resource:cytochrome_C____BP1580 }
[]
nutrient
SYSTEM
NO
(Q24125343,P680,Q14633865)
action is_in
entity Q24125343
action find
entity Q14633865
relation P680
[ANSWER]
['Q24125343', 'P680', 'Q14633865']
ASK WHERE { resource:Q14633865 property:P680 resource:Q24125343 }
No
action is_in
entity cytochrome C    BP1580
action find
entity zinc ion binding
relation molecular function
['cytochrome C    BP1580', 'molecular function', 'zinc ion binding']
ASK WHERE { resource:zinc_ion_binding property:molecular_function resource:cytochrome_C____BP1580 }
[]