Simple Question (Direct)
Simple Question
Q21130652
P681
Q5058355
USER
Which cellular components are components of Endogenous retrovirus group K member 5 Gag polyprotein ?
(Q21130652,P681,c(Q5058355))
action filter_type
action find
entity Q21130652
relation P681
type Q5058355
['Q21130652', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?c WHERE { resource:Q21130652 property:P681 ?c . ?c rdf:type ontology:Q5058355 }
Endogenous retrovirus group K member 5 Gag polyprotein
action filter_type
action find
entity Endogenous retrovirus group K member 5 Gag polyprotein
relation cell component
type cellular component
['Endogenous retrovirus group K member 5 Gag polyprotein', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?c WHERE { resource:Endogenous_retrovirus_group_K_member_5_Gag_polyprotein property:cell_component ?c . ?c rdf:type ontology:cellular_component }
[]
cellular component
Q21106124 Q29548
SYSTEM
viral capsid, plasma membrane
Q21106124 Q29548
(Q21130652,P681,c(Q5058355))
action filter_type
action find
entity Q21130652
relation P681
type Q5058355
[ANSWERS] are components of Endogenous retrovirus group K member 5 Gag polyprotein
['Q21130652', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?c WHERE { resource:Q21130652 property:P681 ?c . ?c rdf:type ontology:Q5058355 }
viral capsid plasma membrane
Viral capsid and plasma membrane are components of Endogenous retrovirus group K member 5 Gag polyprotein
viral capsid plasma membrane
action filter_type
action find
entity Endogenous retrovirus group K member 5 Gag polyprotein
relation cell component
type cellular component
['Endogenous retrovirus group K member 5 Gag polyprotein', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?c WHERE { resource:Endogenous_retrovirus_group_K_member_5_Gag_polyprotein property:cell_component ?c . ?c rdf:type ontology:cellular_component }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21130652
P703
Q16521
USER
Where is Endogenous retrovirus group K member 5 Gag polyprotein found ?
(Q21130652,P703,c(Q16521))
action filter_type
action find
entity Q21130652
relation P703
type Q16521
['Q21130652', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?s WHERE { resource:Q21130652 property:P703 ?s . ?s rdf:type ontology:Q16521 }
Endogenous retrovirus group K member 5 Gag polyprotein
action filter_type
action find
entity Endogenous retrovirus group K member 5 Gag polyprotein
relation found in taxon
type taxon
['Endogenous retrovirus group K member 5 Gag polyprotein', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?s WHERE { resource:Endogenous_retrovirus_group_K_member_5_Gag_polyprotein property:found_in_taxon ?s . ?s rdf:type ontology:taxon }
[]
taxon
Q15978631
SYSTEM
Homo sapiens
Q15978631
(Q21130652,P703,c(Q16521))
action filter_type
action find
entity Q21130652
relation P703
type Q16521
Endogenous retrovirus group K member 5 Gag polyprotein is found in [ANSWER]
['Q21130652', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?s WHERE { resource:Q21130652 property:P703 ?s . ?s rdf:type ontology:Q16521 }
Homo sapiens
Endogenous retrovirus group K member 5 Gag polyprotein is found in Homo sapiens
Homo sapiens
action filter_type
action find
entity Endogenous retrovirus group K member 5 Gag polyprotein
relation found in taxon
type taxon
['Endogenous retrovirus group K member 5 Gag polyprotein', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?s WHERE { resource:Endogenous_retrovirus_group_K_member_5_Gag_polyprotein property:found_in_taxon ?s . ?s rdf:type ontology:taxon }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21130652
P702
Q863908
USER
What encodes Endogenous retrovirus group K member 5 Gag polyprotein ?
(Q21130652,P702,c(Q863908))
action filter_type
action find
entity Q21130652
relation P702
type Q863908
['Q21130652', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?y WHERE { resource:Q21130652 property:P702 ?y . ?y rdf:type ontology:Q863908 }
Endogenous retrovirus group K member 5 Gag polyprotein
action filter_type
action find
entity Endogenous retrovirus group K member 5 Gag polyprotein
relation encoded by
type nucleic acid sequence
['Endogenous retrovirus group K member 5 Gag polyprotein', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?y WHERE { resource:Endogenous_retrovirus_group_K_member_5_Gag_polyprotein property:encoded_by ?y . ?y rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18045258
SYSTEM
ERVK-5
Q18045258
(Q21130652,P702,c(Q863908))
action filter_type
action find
entity Q21130652
relation P702
type Q863908
[ANSWER] encodes Endogenous retrovirus group K member 5 Gag polyprotein
['Q21130652', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?y WHERE { resource:Q21130652 property:P702 ?y . ?y rdf:type ontology:Q863908 }
ERVK-5
ERVK-5 encodes Endogenous retrovirus group K member 5 Gag polyprotein
ERVK-5
action filter_type
action find
entity Endogenous retrovirus group K member 5 Gag polyprotein
relation encoded by
type nucleic acid sequence
['Endogenous retrovirus group K member 5 Gag polyprotein', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?y WHERE { resource:Endogenous_retrovirus_group_K_member_5_Gag_polyprotein property:encoded_by ?y . ?y rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21130652
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(c(Q863908),P688,Q18045258)
action filter_type
action find_reverse
entity Q21130652
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q18045258']
SELECT DISTINCT ?j WHERE { ?j property:P688 resource:Q21130652 . ?j rdf:type ontology:Q863908 }
Endogenous retrovirus group K member 5 Gag polyprotein
action filter_type
action find_reverse
entity Endogenous retrovirus group K member 5 Gag polyprotein
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'ERVK-5']
SELECT DISTINCT ?j WHERE { ?j property:encodes resource:Endogenous_retrovirus_group_K_member_5_Gag_polyprotein . ?j rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18045258
SYSTEM
ERVK-5
Q18045258
(c(Q863908),P688,Q18045258)
action filter_type
action find_reverse
entity Q21130652
relation P688
type Q863908
[ANSWER] encodes that nutrient
[{'concept': 'Q863908'}, 'P688', 'Q18045258']
SELECT DISTINCT ?j WHERE { ?j property:P688 resource:Q21130652 . ?j rdf:type ontology:Q863908 }
ERVK-5
ERVK-5 encodes that nutrient
ERVK-5
action filter_type
action find_reverse
entity Endogenous retrovirus group K member 5 Gag polyprotein
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'ERVK-5']
SELECT DISTINCT ?j WHERE { ?j property:encodes resource:Endogenous_retrovirus_group_K_member_5_Gag_polyprotein . ?j rdf:type ontology:nucleic_acid_sequence }
[]
Logical Reasoning (All)
Logical|Intersection|Multiple_Relation
Q15978631 Q21130652
P703 P688
Q863908
USER
Which nucleic acid sequences encodes Endogenous retrovirus group K member 5 Gag polyprotein and are a part of the taxon Homo sapiens ?
AND((c(Q863908),P688,Q21130652), (c(Q863908),P703,Q15978631))
action filter_type
action intersection
action find_reverse
entity Q21130652
relation P688
action find_reverse
entity Q15978631
relation P703
type Q863908
{'AND': [[{'concept': 'Q863908'}, 'P688', 'Q21130652'], [{'concept': 'Q863908'}, 'P703', 'Q15978631']]}
SELECT DISTINCT ?r WHERE { ?r property:P688 resource:Q21130652 . ?r property:P703 resource:Q15978631 . ?r rdf:type ontology:Q863908 }
Homo sapiens Endogenous retrovirus group K member 5 Gag polyprotein
action filter_type
action intersection
action find_reverse
entity Endogenous retrovirus group K member 5 Gag polyprotein
relation encodes
action find_reverse
entity Homo sapiens
relation found in taxon
type nucleic acid sequence
{'AND': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'Endogenous retrovirus group K member 5 Gag polyprotein'], [{'concept': 'nucleic acid sequence'}, 'found in taxon', 'Homo sapiens']]}
SELECT DISTINCT ?r WHERE { ?r property:encodes resource:Endogenous_retrovirus_group_K_member_5_Gag_polyprotein . ?r property:found_in_taxon resource:Homo_sapiens . ?r rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18045258
SYSTEM
ERVK-5
Q18045258
AND((c(Q863908),P688,Q21130652), (c(Q863908),P703,Q15978631))
action filter_type
action intersection
action find_reverse
entity Q21130652
relation P688
action find_reverse
entity Q15978631
relation P703
type Q863908
[ANSWER] encodes Endogenous retrovirus group K member 5 Gag polyprotein and are a part of the taxon Homo sapiens
{'AND': [[{'concept': 'Q863908'}, 'P688', 'Q21130652'], [{'concept': 'Q863908'}, 'P703', 'Q15978631']]}
SELECT DISTINCT ?r WHERE { ?r property:P688 resource:Q21130652 . ?r property:P703 resource:Q15978631 . ?r rdf:type ontology:Q863908 }
ERVK-5
ERVK-5 encodes Endogenous retrovirus group K member 5 Gag polyprotein and are a part of the taxon Homo sapiens
ERVK-5
action filter_type
action intersection
action find_reverse
entity Endogenous retrovirus group K member 5 Gag polyprotein
relation encodes
action find_reverse
entity Homo sapiens
relation found in taxon
type nucleic acid sequence
{'AND': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'Endogenous retrovirus group K member 5 Gag polyprotein'], [{'concept': 'nucleic acid sequence'}, 'found in taxon', 'Homo sapiens']]}
SELECT DISTINCT ?r WHERE { ?r property:encodes resource:Endogenous_retrovirus_group_K_member_5_Gag_polyprotein . ?r property:found_in_taxon resource:Homo_sapiens . ?r rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q18045258 Q23501037
P702
Q181394
USER
Is hypothetical protein    EF1332 the gene that is encoded by that nucleic acid sequence ?
(Q23501037,P702,Q18045258)
action is_in
entity Q23501037
action find
entity Q18045258
relation P702
['Q23501037', 'P702', 'Q18045258']
ASK WHERE { resource:Q18045258 property:P702 resource:Q23501037 }
ERVK-5 hypothetical protein    EF1332
action is_in
entity hypothetical protein    EF1332
action find
entity ERVK-5
relation encoded by
['hypothetical protein    EF1332', 'encoded by', 'ERVK-5']
ASK WHERE { resource:ERVK-5 property:encoded_by resource:hypothetical_protein____EF1332 }
[]
nutrient
SYSTEM
NO
(Q23501037,P702,Q18045258)
action is_in
entity Q23501037
action find
entity Q18045258
relation P702
[ANSWER]
['Q23501037', 'P702', 'Q18045258']
ASK WHERE { resource:Q18045258 property:P702 resource:Q23501037 }
No
action is_in
entity hypothetical protein    EF1332
action find
entity ERVK-5
relation encoded by
['hypothetical protein    EF1332', 'encoded by', 'ERVK-5']
ASK WHERE { resource:ERVK-5 property:encoded_by resource:hypothetical_protein____EF1332 }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Mult. entity type
Q22328762
P361
Q223557 Q15989253 Q5058355
USER
How many cellular components are a component of less number of physical objects or parts than Dxr protein complex ?
(c(Q5058355),P361,c(Q223557)|c(Q15989253))
action count
action less
action union
action find_tuple_counts
relation P361
type Q5058355
type Q223557
action find_tuple_counts
relation P361
type Q5058355
type Q15989253
action count
action filter_multi_types
action find
entity Q22328762
relation P361
type Q223557
type Q15989253
[{'concept': 'Q5058355'}, 'P361', [{'concept': 'Q223557'}, {'concept': 'Q15989253'}]]
SELECT DISTINCT ( COUNT ( ?x ) AS ?a ) WHERE { { SELECT DISTINCT ( COUNT ( ?p ) AS ?s ) ?x WHERE { { ?x property:P361 ?p . ?x rdf:type ontology:Q5058355 . ?p rdf:type ontology:Q223557 } UNION { ?x property:P361 ?p . ?x rdf:type ontology:Q5058355 . ?p rdf:type ontology:Q15989253 } } GROUP BY ?x } . { SELECT DISTINCT ( COUNT ( ?n ) AS ?h ) WHERE { resource:Q22328762 property:P361 ?n . { VALUES ( ?l ) { ( ontology:Q223557 ) ( ontology:Q15989253 ) } . ?n rdf:type ?l } } } . FILTER ( ?s < ?h ) }
Dxr protein complex
action count
action less
action union
action find_tuple_counts
relation part of
type cellular component
type physical object
action find_tuple_counts
relation part of
type cellular component
type part
action count
action filter_multi_types
action find
entity Dxr protein complex
relation part of
type physical object
type part
[{'concept': 'cellular component'}, 'part of', [{'concept': 'physical object'}, {'concept': 'part'}]]
SELECT DISTINCT ( COUNT ( ?x ) AS ?a ) WHERE { { SELECT DISTINCT ( COUNT ( ?p ) AS ?s ) ?x WHERE { { ?x property:part_of ?p . ?x rdf:type ontology:cellular_component . ?p rdf:type ontology:physical_object } UNION { ?x property:part_of ?p . ?x rdf:type ontology:cellular_component . ?p rdf:type ontology:part } } GROUP BY ?x } . { SELECT DISTINCT ( COUNT ( ?n ) AS ?h ) WHERE { resource:Dxr_protein_complex property:part_of ?n . { VALUES ( ?l ) { ( ontology:physical_object ) ( ontology:part ) } . ?n rdf:type ?l } } } . FILTER ( ?s < ?h ) }
[]
physical object part cellular component
SYSTEM
196
Q22327392 Q22329451 Q22327293 Q14329032 Q22327448 Q21116315 Q22328737 Q21108229 Q14876131 Q22327015 Q14878067 Q22327403 Q22327805 Q14864978 Q14864977 Q14864971 Q22327396 Q22327994 Q22327995 Q22327623 Q22327621 Q21116899 Q14860843 Q24570686 Q22327688 Q22327687 Q22327473 Q22329449 Q22327447 Q21172343 Q21172341 Q26253880 Q24576568 Q24576567 Q22330482 Q22325973 Q21107992 Q671136 Q22326873 Q22327043 Q22326188 Q21469807 Q22326831 Q22325381 Q14877465 Q22327676 Q22326089 Q22327469 Q24576572 Q22327513 Q22325480 Q21120634 Q3824358 Q22329021 Q21120639 Q24576579 Q22328085 Q22328655 Q22329861 Q22329866 Q22329864 Q21095183 Q22330033 Q22328495 Q14905221 Q22326802 Q22329161 Q22329160 Q22327284 Q22330462 Q22327411 Q22327413 Q22327412 Q22327389 Q21105647 Q22327419 Q22329158 Q22329159 Q21106212 Q21109092 Q14864382 Q22329157 Q22329857 Q22329856 Q22329855 Q22329854 Q22326799 Q22329852 Q22328904 Q22329850 Q26253851 Q24570696 Q22326943 Q21136996 Q22329858 Q14906187 Q22327494 Q22327529 Q22327407 Q22327654 Q22327653 Q22327397 Q22327525 Q22327524 Q22327526 Q22329848 Q22329849 Q22329843 Q22329844 Q22329845 Q22329846 Q22329847 Q24570682 Q21971414 Q21095089 Q22327498 Q14911512 Q22330052 Q24570689 Q22330059 Q22327493 Q22327468 Q22325375 Q22327803 Q24576587 Q21108411 Q24576582 Q22325981 Q22329409 Q21104759 Q21484280 Q22329402 Q22327531 Q24570673 Q22328769 Q14877492 Q22328074 Q14901717 Q22330234 Q22330236 Q22330238 Q22328801 Q22330049 Q14819441 Q21108403 Q14330626 Q22328839 Q22325454 Q24576590 Q24576591 Q21105674 Q21097505 Q22327509 Q21468808 Q14863683 Q22327505 Q22327502 Q22327501 Q22327500 Q24570705 Q14864390 Q14330629 Q21971286 Q21105988 Q21095308 Q22330225 Q22326845 Q22326843 Q79927 Q16949578 Q14876059 Q22327686 Q22327647 Q22327510 Q22327511 Q22327108 Q21112489 Q22327517 Q22327518 Q22329467 Q22329403 Q26253890 Q29548 Q22328584 Q22327341 Q22327343 Q22327474 Q14860540 Q1640852 Q6414172 Q22327421 Q21115425 Q22327736 Q22328601 Q22327390 Q21095620
(c(Q5058355),P361,c(Q223557)|c(Q15989253))
action count
action less
action union
action find_tuple_counts
relation P361
type Q5058355
type Q223557
action find_tuple_counts
relation P361
type Q5058355
type Q15989253
action count
action filter_multi_types
action find
entity Q22328762
relation P361
type Q223557
type Q15989253
[ANSWER]
[{'concept': 'Q5058355'}, 'P361', [{'concept': 'Q223557'}, {'concept': 'Q15989253'}]]
SELECT DISTINCT ( COUNT ( ?x ) AS ?a ) WHERE { { SELECT DISTINCT ( COUNT ( ?p ) AS ?s ) ?x WHERE { { ?x property:P361 ?p . ?x rdf:type ontology:Q5058355 . ?p rdf:type ontology:Q223557 } UNION { ?x property:P361 ?p . ?x rdf:type ontology:Q5058355 . ?p rdf:type ontology:Q15989253 } } GROUP BY ?x } . { SELECT DISTINCT ( COUNT ( ?n ) AS ?h ) WHERE { resource:Q22328762 property:P361 ?n . { VALUES ( ?l ) { ( ontology:Q223557 ) ( ontology:Q15989253 ) } . ?n rdf:type ?l } } } . FILTER ( ?s < ?h ) }
symbiont-containing vacuolar space basolateral part of cell ciliary part endoplasmic reticulum membrane interleukin-35 complex viral nucleocapsid iron-sulfur cluster assembly complex subapical complex compact myelin photosystem II oxygen evolving complex organelle membrane PTEX complex photosynthetic membrane lipopolysaccharide receptor complex plasma membrane part succinate dehydrogenase complex scaffoldin complex rhoptry rhoptry membrane lumenal side of membrane leaflet of membrane bilayer complement component C1 complex nuclear outer membrane extrinsic component of presynaptic membrane prospore membrane leading edge prospore membrane spindle pole body attachment site intrinsic component of organelle membrane lateral shield interleukin-27 complex inner dense plaque of desmosome outer dense plaque of desmosome extrinsic component of postsynaptic endosome membrane extracellular matrix of synaptic cleft perisynaptic extracellular matrix ventral disc supernumerary microtubule array larval serum protein complex ER ubiquitin ligase complex synaptic vesicle cell division site part plasma membrane-derived thylakoid ribulose bisphosphate carboxylase complex aster dolichyl-phosphate-mannose-protein mannosyltransferase complex nuclear membrane part HU-DNA complex receptor complex plasma membrane-derived thylakoid membrane contractile fiber part female germline ring canal inner rim presynaptic endosome membrane postsynaptic specialization extracellular matrix component interleukin-12 complex intracellular apical complex interleukin-23 complex intrinsic component of presynaptic membrane external encapsulating structure cell septum part viral capsid, decoration virus tail, major subunit virus tail, minor subunit dendritic spine head capsomere spitzenkorper symbiont-containing vacuole membrane endoplasmic reticulum palmitoyltransferase complex ventral disc lateral crest ventral disc overlap zone cell projection part longitudinal side of cell surface extracellular space of host extrahaustorial matrix extra-invasive hyphal space host cell part transmembrane transporter complex inhibin complex ventral disc dorsal microribbon ventral disc microtubule array GPI-anchor transamidase complex nuclear outer membrane-endoplasmic reticulum membrane network presynaptic active zone ventral disc crossbridge virus tail, fiber virus tail, baseplate virus tail, tube virus tail, sheath alpha-1,6-mannosyltransferase complex virus tail, shaft dosage compensation complex icosahedral viral capsid, spike integral component of spine apparatus membrane extrinsic component of spine apparatus membrane fatty acid elongase complex immunoglobulin complex, circulating virus tail, tip CRLF-CLCF1 complex postsynaptic endosome presynaptic grid activin complex annulate lamellae membrane region extracellular exosome complex cytoplasmic side of dendritic spine plasma membrane presynaptic active zone dense projection subsynaptic reticulum icosahedral viral capsid, collar icosahedral viral capsid, collar fiber viral outer capsid viral intermediate capsid viral inner capsid icosahedral viral capsid, neck icosahedral viral capsid, neck fiber spine apparatus membrane plasma lipoprotein particle blood microparticle postsynaptic endocytic zone stereocilium dinoflagellate antapex extrinsic component of postsynaptic membrane cell surface furrow extrinsic component of synaptic vesicle membrane female germline ring canal outer rim IHF-DNA complex nuclear membrane complex Bqt3-Bqt4 intrinsic component of postsynaptic endosome membrane CNTFR-CLCF1 complex intrinsic component of postsynaptic membrane classical-complement-pathway C3/C5 convertase complex extracellular core region of desmosome perinuclear endoplasmic reticulum membrane retromer, cargo-selective complex inner membrane complex clathrin coat of synaptic vesicle postsynaptic endosome membrane viral portal complex lateral loop rhoptry lumen intracellular part basal ring of apical complex dinoflagellate apex polar ring of apical complex TRAPPI protein complex eif4e-cup complex fibrinogen complex synaptic vesicle lumen myelin sheath abaxonal region viral scaffold curli intrinsic component of presynaptic endosome membrane intrinsic component of spine apparatus membrane Nem1-Spo7 phosphatase complex dendritic spine neck postsynaptic cytosol retromer, tubulation complex insulin-like growth factor binding protein complex presynaptic endosome presynaptic active zone cytoplasmic component presynaptic endocytic zone cytoplasmic component presynaptic endocytic zone postsynaptic endocytic zone cytoplasmic component synaptic vesicle membrane myelin sheath adaxonal region oligosaccharyltransferase complex stereocilium membrane retromer complex rhoptry neck intracellular organelle part Dsc E3 ubiquitin ligase complex endoplasmic reticulum Autapse phosphatidylinositol 3-kinase complex prospore membrane external encapsulating structure part presynaptic cytosol postsynaptic cytoskeleton mitochondrial membrane part stereocilium tip presynaptic cytoskeleton plasma membrane region bacterial-type flagellum part basal labyrinth extrinsic component of presynaptic endosome membrane plasma membrane Kibra-Ex-Mer complex plasma membrane-derived thylakoid photosystem II plasma membrane-derived photosystem I intrinsic component of synaptic vesicle membrane clathrin-coated pit Schmidt-Lanterman incisure kinocilium bursicon neuropeptide hormone complex Ire1 complex chaperone-mediated autophagy translocation complex H-NS complex symbiont-containing vacuolar membrane network Flemming body
196
action count
action less
action union
action find_tuple_counts
relation part of
type cellular component
type physical object
action find_tuple_counts
relation part of
type cellular component
type part
action count
action filter_multi_types
action find
entity Dxr protein complex
relation part of
type physical object
type part
[{'concept': 'cellular component'}, 'part of', [{'concept': 'physical object'}, {'concept': 'part'}]]
SELECT DISTINCT ( COUNT ( ?x ) AS ?a ) WHERE { { SELECT DISTINCT ( COUNT ( ?p ) AS ?s ) ?x WHERE { { ?x property:part_of ?p . ?x rdf:type ontology:cellular_component . ?p rdf:type ontology:physical_object } UNION { ?x property:part_of ?p . ?x rdf:type ontology:cellular_component . ?p rdf:type ontology:part } } GROUP BY ?x } . { SELECT DISTINCT ( COUNT ( ?n ) AS ?h ) WHERE { resource:Dxr_protein_complex property:part_of ?n . { VALUES ( ?l ) { ( ontology:physical_object ) ( ontology:part ) } . ?n rdf:type ?l } } } . FILTER ( ?s < ?h ) }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Mult. entity type|Incomplete
Q22326356
P361
Q223557 Q15989253 Q5058355
USER
And how about membrane protein complex?
(c(Q5058355),P361,c(Q223557)|c(Q15989253))
action count
action less
action union
action find_tuple_counts
relation P361
type Q5058355
type Q223557
action find_tuple_counts
relation P361
type Q5058355
type Q15989253
action count
action filter_multi_types
action find
entity Q22326356
relation P361
type Q223557
type Q15989253
[{'concept': 'Q5058355'}, 'P361', [{'concept': 'Q223557'}, {'concept': 'Q15989253'}]]
SELECT DISTINCT ( COUNT ( ?g ) AS ?r ) WHERE { { SELECT DISTINCT ?g ( COUNT ( ?u ) AS ?h ) WHERE { { ?g property:P361 ?u . ?g rdf:type ontology:Q5058355 . ?u rdf:type ontology:Q15989253 } UNION { ?g property:P361 ?u . ?g rdf:type ontology:Q5058355 . ?u rdf:type ontology:Q223557 } } GROUP BY ?g } . { SELECT DISTINCT ( COUNT ( ?e ) AS ?f ) WHERE { resource:Q22326356 property:P361 ?e . { ?e rdf:type ?c . VALUES ( ?c ) { ( ontology:Q223557 ) ( ontology:Q15989253 ) } } } } . FILTER ( ?h < ?f ) }
membrane protein complex
action count
action less
action union
action find_tuple_counts
relation part of
type cellular component
type physical object
action find_tuple_counts
relation part of
type cellular component
type part
action count
action filter_multi_types
action find
entity membrane protein complex
relation part of
type physical object
type part
[{'concept': 'cellular component'}, 'part of', [{'concept': 'physical object'}, {'concept': 'part'}]]
SELECT DISTINCT ( COUNT ( ?g ) AS ?r ) WHERE { { SELECT DISTINCT ?g ( COUNT ( ?u ) AS ?h ) WHERE { { ?g property:part_of ?u . ?g rdf:type ontology:cellular_component . ?u rdf:type ontology:part } UNION { ?g property:part_of ?u . ?g rdf:type ontology:cellular_component . ?u rdf:type ontology:physical_object } } GROUP BY ?g } . { SELECT DISTINCT ( COUNT ( ?e ) AS ?f ) WHERE { resource:membrane_protein_complex property:part_of ?e . { ?e rdf:type ?c . VALUES ( ?c ) { ( ontology:physical_object ) ( ontology:part ) } } } } . FILTER ( ?h < ?f ) }
[]
physical object part cellular component
SYSTEM
196
Q22327392 Q22329451 Q22327293 Q14329032 Q22327448 Q21116315 Q22328737 Q21108229 Q14876131 Q22327015 Q14878067 Q22327403 Q22327805 Q14864978 Q14864977 Q14864971 Q22327396 Q22327994 Q22327995 Q22327623 Q22327621 Q21116899 Q14860843 Q24570686 Q22327688 Q22327687 Q22327473 Q22329449 Q22327447 Q21172343 Q21172341 Q26253880 Q24576568 Q24576567 Q22330482 Q22325973 Q21107992 Q671136 Q22326873 Q22327043 Q22326188 Q21469807 Q22326831 Q22325381 Q14877465 Q22327676 Q22326089 Q22327469 Q24576572 Q22327513 Q22325480 Q21120634 Q3824358 Q22329021 Q21120639 Q24576579 Q22328085 Q22328655 Q22329861 Q22329866 Q22329864 Q21095183 Q22330033 Q22328495 Q14905221 Q22326802 Q22329161 Q22329160 Q22327284 Q22330462 Q22327411 Q22327413 Q22327412 Q22327389 Q21105647 Q22327419 Q22329158 Q22329159 Q21106212 Q21109092 Q14864382 Q22329157 Q22329857 Q22329856 Q22329855 Q22329854 Q22326799 Q22329852 Q22328904 Q22329850 Q26253851 Q24570696 Q22326943 Q21136996 Q22329858 Q14906187 Q22327494 Q22327529 Q22327407 Q22327654 Q22327653 Q22327397 Q22327525 Q22327524 Q22327526 Q22329848 Q22329849 Q22329843 Q22329844 Q22329845 Q22329846 Q22329847 Q24570682 Q21971414 Q21095089 Q22327498 Q14911512 Q22330052 Q24570689 Q22330059 Q22327493 Q22327468 Q22325375 Q22327803 Q24576587 Q21108411 Q24576582 Q22325981 Q22329409 Q21104759 Q21484280 Q22329402 Q22327531 Q24570673 Q22328769 Q14877492 Q22328074 Q14901717 Q22330234 Q22330236 Q22330238 Q22328801 Q22330049 Q14819441 Q21108403 Q14330626 Q22328839 Q22325454 Q24576590 Q24576591 Q21105674 Q21097505 Q22327509 Q21468808 Q14863683 Q22327505 Q22327502 Q22327501 Q22327500 Q24570705 Q14864390 Q14330629 Q21971286 Q21105988 Q21095308 Q22330225 Q22326845 Q22326843 Q79927 Q16949578 Q14876059 Q22327686 Q22327647 Q22327510 Q22327511 Q22327108 Q21112489 Q22327517 Q22327518 Q22329467 Q22329403 Q26253890 Q29548 Q22328584 Q22327341 Q22327343 Q22327474 Q14860540 Q1640852 Q6414172 Q22327421 Q21115425 Q22327736 Q22328601 Q22327390 Q21095620
(c(Q5058355),P361,c(Q223557)|c(Q15989253))
action count
action less
action union
action find_tuple_counts
relation P361
type Q5058355
type Q223557
action find_tuple_counts
relation P361
type Q5058355
type Q15989253
action count
action filter_multi_types
action find
entity Q22326356
relation P361
type Q223557
type Q15989253
[ANSWER]
[{'concept': 'Q5058355'}, 'P361', [{'concept': 'Q223557'}, {'concept': 'Q15989253'}]]
SELECT DISTINCT ( COUNT ( ?g ) AS ?r ) WHERE { { SELECT DISTINCT ?g ( COUNT ( ?u ) AS ?h ) WHERE { { ?g property:P361 ?u . ?g rdf:type ontology:Q5058355 . ?u rdf:type ontology:Q15989253 } UNION { ?g property:P361 ?u . ?g rdf:type ontology:Q5058355 . ?u rdf:type ontology:Q223557 } } GROUP BY ?g } . { SELECT DISTINCT ( COUNT ( ?e ) AS ?f ) WHERE { resource:Q22326356 property:P361 ?e . { ?e rdf:type ?c . VALUES ( ?c ) { ( ontology:Q223557 ) ( ontology:Q15989253 ) } } } } . FILTER ( ?h < ?f ) }
symbiont-containing vacuolar space basolateral part of cell ciliary part endoplasmic reticulum membrane interleukin-35 complex viral nucleocapsid iron-sulfur cluster assembly complex subapical complex compact myelin photosystem II oxygen evolving complex organelle membrane PTEX complex photosynthetic membrane lipopolysaccharide receptor complex plasma membrane part succinate dehydrogenase complex scaffoldin complex rhoptry rhoptry membrane lumenal side of membrane leaflet of membrane bilayer complement component C1 complex nuclear outer membrane extrinsic component of presynaptic membrane prospore membrane leading edge prospore membrane spindle pole body attachment site intrinsic component of organelle membrane lateral shield interleukin-27 complex inner dense plaque of desmosome outer dense plaque of desmosome extrinsic component of postsynaptic endosome membrane extracellular matrix of synaptic cleft perisynaptic extracellular matrix ventral disc supernumerary microtubule array larval serum protein complex ER ubiquitin ligase complex synaptic vesicle cell division site part plasma membrane-derived thylakoid ribulose bisphosphate carboxylase complex aster dolichyl-phosphate-mannose-protein mannosyltransferase complex nuclear membrane part HU-DNA complex receptor complex plasma membrane-derived thylakoid membrane contractile fiber part female germline ring canal inner rim presynaptic endosome membrane postsynaptic specialization extracellular matrix component interleukin-12 complex intracellular apical complex interleukin-23 complex intrinsic component of presynaptic membrane external encapsulating structure cell septum part viral capsid, decoration virus tail, major subunit virus tail, minor subunit dendritic spine head capsomere spitzenkorper symbiont-containing vacuole membrane endoplasmic reticulum palmitoyltransferase complex ventral disc lateral crest ventral disc overlap zone cell projection part longitudinal side of cell surface extracellular space of host extrahaustorial matrix extra-invasive hyphal space host cell part transmembrane transporter complex inhibin complex ventral disc dorsal microribbon ventral disc microtubule array GPI-anchor transamidase complex nuclear outer membrane-endoplasmic reticulum membrane network presynaptic active zone ventral disc crossbridge virus tail, fiber virus tail, baseplate virus tail, tube virus tail, sheath alpha-1,6-mannosyltransferase complex virus tail, shaft dosage compensation complex icosahedral viral capsid, spike integral component of spine apparatus membrane extrinsic component of spine apparatus membrane fatty acid elongase complex immunoglobulin complex, circulating virus tail, tip CRLF-CLCF1 complex postsynaptic endosome presynaptic grid activin complex annulate lamellae membrane region extracellular exosome complex cytoplasmic side of dendritic spine plasma membrane presynaptic active zone dense projection subsynaptic reticulum icosahedral viral capsid, collar icosahedral viral capsid, collar fiber viral outer capsid viral intermediate capsid viral inner capsid icosahedral viral capsid, neck icosahedral viral capsid, neck fiber spine apparatus membrane plasma lipoprotein particle blood microparticle postsynaptic endocytic zone stereocilium dinoflagellate antapex extrinsic component of postsynaptic membrane cell surface furrow extrinsic component of synaptic vesicle membrane female germline ring canal outer rim IHF-DNA complex nuclear membrane complex Bqt3-Bqt4 intrinsic component of postsynaptic endosome membrane CNTFR-CLCF1 complex intrinsic component of postsynaptic membrane classical-complement-pathway C3/C5 convertase complex extracellular core region of desmosome perinuclear endoplasmic reticulum membrane retromer, cargo-selective complex inner membrane complex clathrin coat of synaptic vesicle postsynaptic endosome membrane viral portal complex lateral loop rhoptry lumen intracellular part basal ring of apical complex dinoflagellate apex polar ring of apical complex TRAPPI protein complex eif4e-cup complex fibrinogen complex synaptic vesicle lumen myelin sheath abaxonal region viral scaffold curli intrinsic component of presynaptic endosome membrane intrinsic component of spine apparatus membrane Nem1-Spo7 phosphatase complex dendritic spine neck postsynaptic cytosol retromer, tubulation complex insulin-like growth factor binding protein complex presynaptic endosome presynaptic active zone cytoplasmic component presynaptic endocytic zone cytoplasmic component presynaptic endocytic zone postsynaptic endocytic zone cytoplasmic component synaptic vesicle membrane myelin sheath adaxonal region oligosaccharyltransferase complex stereocilium membrane retromer complex rhoptry neck intracellular organelle part Dsc E3 ubiquitin ligase complex endoplasmic reticulum Autapse phosphatidylinositol 3-kinase complex prospore membrane external encapsulating structure part presynaptic cytosol postsynaptic cytoskeleton mitochondrial membrane part stereocilium tip presynaptic cytoskeleton plasma membrane region bacterial-type flagellum part basal labyrinth extrinsic component of presynaptic endosome membrane plasma membrane Kibra-Ex-Mer complex plasma membrane-derived thylakoid photosystem II plasma membrane-derived photosystem I intrinsic component of synaptic vesicle membrane clathrin-coated pit Schmidt-Lanterman incisure kinocilium bursicon neuropeptide hormone complex Ire1 complex chaperone-mediated autophagy translocation complex H-NS complex symbiont-containing vacuolar membrane network Flemming body
196
action count
action less
action union
action find_tuple_counts
relation part of
type cellular component
type physical object
action find_tuple_counts
relation part of
type cellular component
type part
action count
action filter_multi_types
action find
entity membrane protein complex
relation part of
type physical object
type part
[{'concept': 'cellular component'}, 'part of', [{'concept': 'physical object'}, {'concept': 'part'}]]
SELECT DISTINCT ( COUNT ( ?g ) AS ?r ) WHERE { { SELECT DISTINCT ?g ( COUNT ( ?u ) AS ?h ) WHERE { { ?g property:part_of ?u . ?g rdf:type ontology:cellular_component . ?u rdf:type ontology:part } UNION { ?g property:part_of ?u . ?g rdf:type ontology:cellular_component . ?u rdf:type ontology:physical_object } } GROUP BY ?g } . { SELECT DISTINCT ( COUNT ( ?e ) AS ?f ) WHERE { resource:membrane_protein_complex property:part_of ?e . { ?e rdf:type ?c . VALUES ( ?c ) { ( ontology:physical_object ) ( ontology:part ) } } } } . FILTER ( ?h < ?f ) }
[]
Quantitative Reasoning (All)
Quantitative|Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P361
Q223557 Q15989253 Q5058355
USER
Which cellular components are a component of atleast 1 physical objects or parts ?
(c(Q5058355),P361,c(Q223557)|c(Q15989253))
action atleast
action union
action find_tuple_counts
relation P361
type Q5058355
type Q223557
action find_tuple_counts
relation P361
type Q5058355
type Q15989253
value 1
[{'concept': 'Q5058355'}, 'P361', [{'concept': 'Q223557'}, {'concept': 'Q15989253'}]]
SELECT DISTINCT ?k WHERE { { SELECT DISTINCT ( COUNT ( ?i ) AS ?a ) ?k WHERE { { ?k property:P361 ?i . ?k rdf:type ontology:Q5058355 . ?i rdf:type ontology:Q223557 } UNION { ?i rdf:type ontology:Q15989253 . ?k rdf:type ontology:Q5058355 . ?k property:P361 ?i } } GROUP BY ?k } . FILTER ( ?a >= 1 ) }
action atleast
action union
action find_tuple_counts
relation part of
type cellular component
type physical object
action find_tuple_counts
relation part of
type cellular component
type part
value 1
[{'concept': 'cellular component'}, 'part of', [{'concept': 'physical object'}, {'concept': 'part'}]]
SELECT DISTINCT ?k WHERE { { SELECT DISTINCT ( COUNT ( ?i ) AS ?a ) ?k WHERE { { ?k property:part_of ?i . ?k rdf:type ontology:cellular_component . ?i rdf:type ontology:physical_object } UNION { ?i rdf:type ontology:part . ?k rdf:type ontology:cellular_component . ?k property:part_of ?i } } GROUP BY ?k } . FILTER ( ?a >= 1 ) }
[]
physical object part cellular component
Q14912978 Q22329076 Q22326356
SYSTEM
mitochondrial nucleoid, plastid nucleoid, membrane protein complex
Q14912978 Q22326356 Q22327622 Q22327479 Q22327475 Q22326870 Q14914004 Q15320191 Q22328035 Q22329249 Q22327061 Q22326951 Q22328884 Q22328762 Q22327083 Q14873267 Q22329076 Q2914458 Q193825 Q22327423
(c(Q5058355),P361,c(Q223557)|c(Q15989253))
action atleast
action union
action find_tuple_counts
relation P361
type Q5058355
type Q223557
action find_tuple_counts
relation P361
type Q5058355
type Q15989253
value 1
The [ANSWERS] are a component of atleast 1 physical objects or parts
[{'concept': 'Q5058355'}, 'P361', [{'concept': 'Q223557'}, {'concept': 'Q15989253'}]]
SELECT DISTINCT ?k WHERE { { SELECT DISTINCT ( COUNT ( ?i ) AS ?a ) ?k WHERE { { ?k property:P361 ?i . ?k rdf:type ontology:Q5058355 . ?i rdf:type ontology:Q223557 } UNION { ?i rdf:type ontology:Q15989253 . ?k rdf:type ontology:Q5058355 . ?k property:P361 ?i } } GROUP BY ?k } . FILTER ( ?a >= 1 ) }
mitochondrial nucleoid membrane protein complex side of membrane presynapse postsynapse DAPK1-calmodulin complex synaptic membrane synaptic cleft organelle lumen virion nucleoid extracellular isoamylase complex oxidoreductase complex organellar ribosome Dxr protein complex PTEN phosphatase complex cell-cell junction plastid nucleoid extracellular space extracellular matrix extracellular organelle
The mitochondrial nucleoid, plastid nucleoid and membrane protein complex are a component of atleast 1 physical objects or parts
mitochondrial nucleoid plastid nucleoid membrane protein complex
action atleast
action union
action find_tuple_counts
relation part of
type cellular component
type physical object
action find_tuple_counts
relation part of
type cellular component
type part
value 1
[{'concept': 'cellular component'}, 'part of', [{'concept': 'physical object'}, {'concept': 'part'}]]
SELECT DISTINCT ?k WHERE { { SELECT DISTINCT ( COUNT ( ?i ) AS ?a ) ?k WHERE { { ?k property:part_of ?i . ?k rdf:type ontology:cellular_component . ?i rdf:type ontology:physical_object } UNION { ?i rdf:type ontology:part . ?k rdf:type ontology:cellular_component . ?k property:part_of ?i } } GROUP BY ?k } . FILTER ( ?a >= 1 ) }
[]
Simple Question (Coreferenced)
Simple Question|Mult. Entity
Q14912978 Q22329076 Q22326356
P361
Q15989253
USER
Which parts are those cellular components a component of ?
(Q14912978,P361,c(Q15989253)) (Q22329076,P361,c(Q15989253)) (Q22326356,P361,c(Q15989253))
action filter_type
action find
entity prev_answer
relation P361
type Q15989253
['Q14912978', 'P361', {'concept': 'Q15989253'}] ['Q22329076', 'P361', {'concept': 'Q15989253'}] ['Q22326356', 'P361', {'concept': 'Q15989253'}]
SELECT DISTINCT ?n WHERE { ?n rdf:type ontology:Q15989253 . VALUES ( ?r ) { ( resource:Q14912978 ) ( resource:Q22326356 ) ( resource:Q22327622 ) } . ?r property:P361 ?n }
mitochondrial nucleoid plastid nucleoid membrane protein complex
action filter_type
action find
entity prev_answer
relation part of
type part
['mitochondrial nucleoid', 'part of', {'concept': 'part'}] ['plastid nucleoid', 'part of', {'concept': 'part'}] ['membrane protein complex', 'part of', {'concept': 'part'}]
SELECT DISTINCT ?n WHERE { ?n rdf:type ontology:part . VALUES ( ?r ) { ( resource:mitochondrial_nucleoid ) ( resource:membrane_protein_complex ) ( resource:side_of_membrane ) } . ?r property:part_of ?n }
[]
part
Q39572 Q165963 Q14349455
SYSTEM
mitochondrion, plastid, membrane
Q39572 Q165963 Q14349455
(Q14912978,P361,c(Q15989253)) (Q22329076,P361,c(Q15989253)) (Q22326356,P361,c(Q15989253))
action filter_type
action find
entity prev_answer
relation P361
type Q15989253
[ANSWERS] are those cellular components a component of
['Q14912978', 'P361', {'concept': 'Q15989253'}] ['Q22329076', 'P361', {'concept': 'Q15989253'}] ['Q22326356', 'P361', {'concept': 'Q15989253'}]
SELECT DISTINCT ?n WHERE { ?n rdf:type ontology:Q15989253 . VALUES ( ?r ) { ( resource:Q14912978 ) ( resource:Q22326356 ) ( resource:Q22327622 ) } . ?r property:P361 ?n }
mitochondrion plastid membrane
Mitochondrion, plastid and membrane are those cellular components a component of
mitochondrion plastid membrane
action filter_type
action find
entity prev_answer
relation part of
type part
['mitochondrial nucleoid', 'part of', {'concept': 'part'}] ['plastid nucleoid', 'part of', {'concept': 'part'}] ['membrane protein complex', 'part of', {'concept': 'part'}]
SELECT DISTINCT ?n WHERE { ?n rdf:type ontology:part . VALUES ( ?r ) { ( resource:mitochondrial_nucleoid ) ( resource:membrane_protein_complex ) ( resource:side_of_membrane ) } . ?r property:part_of ?n }
[]
Simple Question (Coreferenced)
Simple Question|Mult. Entity
Q39572 Q165963 Q14349455
P361
Q5058355
USER
Which cellular components are a portion of those parts ?
(c(Q5058355),P361,Q39572) (c(Q5058355),P361,Q165963) (c(Q5058355),P361,Q14349455)
action filter_type
action find_reverse
entity prev_answer
relation P361
type Q5058355
[{'concept': 'Q5058355'}, 'P361', 'Q39572'] [{'concept': 'Q5058355'}, 'P361', 'Q165963'] [{'concept': 'Q5058355'}, 'P361', 'Q14349455']
SELECT DISTINCT ?h WHERE { VALUES ( ?c ) { ( resource:Q39572 ) ( resource:Q165963 ) ( resource:Q14349455 ) } . ?h rdf:type ontology:Q5058355 . ?h property:P361 ?c }
mitochondrion plastid membrane
action filter_type
action find_reverse
entity prev_answer
relation part of
type cellular component
[{'concept': 'cellular component'}, 'part of', 'mitochondrion'] [{'concept': 'cellular component'}, 'part of', 'plastid'] [{'concept': 'cellular component'}, 'part of', 'membrane']
SELECT DISTINCT ?h WHERE { VALUES ( ?c ) { ( resource:mitochondrion ) ( resource:plastid ) ( resource:membrane ) } . ?h rdf:type ontology:cellular_component . ?h property:part_of ?c }
[]
cellular component
Q14912978 Q22329076 Q22326356
SYSTEM
mitochondrial nucleoid, plastid nucleoid, membrane protein complex
Q14912978 Q22329076 Q22326356 Q22327622
(c(Q5058355),P361,Q39572) (c(Q5058355),P361,Q165963) (c(Q5058355),P361,Q14349455)
action filter_type
action find_reverse
entity prev_answer
relation P361
type Q5058355
The [ANSWERS] are a portion of those parts
[{'concept': 'Q5058355'}, 'P361', 'Q39572'] [{'concept': 'Q5058355'}, 'P361', 'Q165963'] [{'concept': 'Q5058355'}, 'P361', 'Q14349455']
SELECT DISTINCT ?h WHERE { VALUES ( ?c ) { ( resource:Q39572 ) ( resource:Q165963 ) ( resource:Q14349455 ) } . ?h rdf:type ontology:Q5058355 . ?h property:P361 ?c }
mitochondrial nucleoid plastid nucleoid membrane protein complex side of membrane
The mitochondrial nucleoid, plastid nucleoid and membrane protein complex are a portion of those parts
mitochondrial nucleoid plastid nucleoid membrane protein complex
action filter_type
action find_reverse
entity prev_answer
relation part of
type cellular component
[{'concept': 'cellular component'}, 'part of', 'mitochondrion'] [{'concept': 'cellular component'}, 'part of', 'plastid'] [{'concept': 'cellular component'}, 'part of', 'membrane']
SELECT DISTINCT ?h WHERE { VALUES ( ?c ) { ( resource:mitochondrion ) ( resource:plastid ) ( resource:membrane ) } . ?h rdf:type ontology:cellular_component . ?h property:part_of ?c }
[]