Simple Question (Direct)
Simple Question
Q23529018
P681
Q5058355
USER
What is a component of sensor histidine kinase    CBO1922 ?
(Q23529018,P681,c(Q5058355))
action filter_type
action find
entity Q23529018
relation P681
type Q5058355
['Q23529018', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?l WHERE { resource:Q23529018 property:P681 ?l . ?l rdf:type ontology:Q5058355 }
sensor histidine kinase    CBO1922
action filter_type
action find
entity sensor histidine kinase    CBO1922
relation cell component
type cellular component
['sensor histidine kinase    CBO1922', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?l WHERE { resource:sensor_histidine_kinase____CBO1922 property:cell_component ?l . ?l rdf:type ontology:cellular_component }
[]
cellular component
Q3824358
SYSTEM
intracellular
Q3824358
(Q23529018,P681,c(Q5058355))
action filter_type
action find
entity Q23529018
relation P681
type Q5058355
A component of sensor histidine kinase CBO 1922 is an [ANSWER]
['Q23529018', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?l WHERE { resource:Q23529018 property:P681 ?l . ?l rdf:type ontology:Q5058355 }
intracellular
A component of sensor histidine kinase CBO 1922 is an intracellular
intracellular
action filter_type
action find
entity sensor histidine kinase    CBO1922
relation cell component
type cellular component
['sensor histidine kinase    CBO1922', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?l WHERE { resource:sensor_histidine_kinase____CBO1922 property:cell_component ?l . ?l rdf:type ontology:cellular_component }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23529018
P688
Q863908
USER
Which nucleic acid sequences encode that nutrient ?
(c(Q863908),P688,Q3824358)
action filter_type
action find_reverse
entity Q23529018
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q3824358']
SELECT DISTINCT ?d WHERE { ?d rdf:type ontology:Q863908 . ?d property:P688 resource:Q23529018 }
sensor histidine kinase    CBO1922
action filter_type
action find_reverse
entity sensor histidine kinase    CBO1922
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'intracellular']
SELECT DISTINCT ?d WHERE { ?d rdf:type ontology:nucleic_acid_sequence . ?d property:encodes resource:sensor_histidine_kinase____CBO1922 }
[]
nucleic acid sequence
Q23200108 Q23408055
SYSTEM
sensor histidine kinase    CBO1922, sensor histidine kinase    CLC_1867
Q23200108 Q23408055
(c(Q863908),P688,Q3824358)
action filter_type
action find_reverse
entity Q23529018
relation P688
type Q863908
[ANSWERS]
[{'concept': 'Q863908'}, 'P688', 'Q3824358']
SELECT DISTINCT ?d WHERE { ?d rdf:type ontology:Q863908 . ?d property:P688 resource:Q23529018 }
sensor histidine kinase    CBO1922 sensor histidine kinase    CLC_1867
Sensor histidine kinase CBO1922 and sensor histidine kinase CLC 1867 encode that nutrient
sensor histidine kinase    CBO1922 sensor histidine kinase    CLC_1867
action filter_type
action find_reverse
entity sensor histidine kinase    CBO1922
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'intracellular']
SELECT DISTINCT ?d WHERE { ?d rdf:type ontology:nucleic_acid_sequence . ?d property:encodes resource:sensor_histidine_kinase____CBO1922 }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P361
Q15989253 Q5058355 Q5058355
USER
How many cellular components are a portion of exactly 2 parts and cellular components ?
(c(Q5058355),P361,c(Q15989253)|c(Q5058355))
action count
action equal
action union
action find_tuple_counts
relation P361
type Q5058355
type Q15989253
action find_tuple_counts
relation P361
type Q5058355
type Q5058355
value 2
[{'concept': 'Q5058355'}, 'P361', [{'concept': 'Q15989253'}, {'concept': 'Q5058355'}]]
SELECT DISTINCT ( COUNT ( ?h ) AS ?n ) WHERE { { SELECT DISTINCT ( COUNT ( ?k ) AS ?l ) ?h WHERE { ?k rdf:type ?m . VALUES ( ?m ) { ( ontology:Q15989253 ) ( ontology:Q5058355 ) } } GROUP BY ?h } . FILTER ( ?l = 2 ) }
action count
action equal
action union
action find_tuple_counts
relation part of
type cellular component
type part
action find_tuple_counts
relation part of
type cellular component
type cellular component
value 2
[{'concept': 'cellular component'}, 'part of', [{'concept': 'part'}, {'concept': 'cellular component'}]]
SELECT DISTINCT ( COUNT ( ?h ) AS ?n ) WHERE { { SELECT DISTINCT ( COUNT ( ?k ) AS ?l ) ?h WHERE { ?k rdf:type ?m . VALUES ( ?m ) { ( ontology:part ) ( ontology:cellular_component ) } } GROUP BY ?h } . FILTER ( ?l = 2 ) }
[]
part cellular component cellular component
SYSTEM
5
Q22329451 Q21107992 Q22329159 Q22327531 Q22327518
(c(Q5058355),P361,c(Q15989253)|c(Q5058355))
action count
action equal
action union
action find_tuple_counts
relation P361
type Q5058355
type Q15989253
action find_tuple_counts
relation P361
type Q5058355
type Q5058355
value 2
[ANSWER]
[{'concept': 'Q5058355'}, 'P361', [{'concept': 'Q15989253'}, {'concept': 'Q5058355'}]]
SELECT DISTINCT ( COUNT ( ?h ) AS ?n ) WHERE { { SELECT DISTINCT ( COUNT ( ?k ) AS ?l ) ?h WHERE { ?k rdf:type ?m . VALUES ( ?m ) { ( ontology:Q15989253 ) ( ontology:Q5058355 ) } } GROUP BY ?h } . FILTER ( ?l = 2 ) }
basolateral part of cell ER ubiquitin ligase complex ventral disc microtubule array clathrin coat of synaptic vesicle plasma membrane region
5
action count
action equal
action union
action find_tuple_counts
relation part of
type cellular component
type part
action find_tuple_counts
relation part of
type cellular component
type cellular component
value 2
[{'concept': 'cellular component'}, 'part of', [{'concept': 'part'}, {'concept': 'cellular component'}]]
SELECT DISTINCT ( COUNT ( ?h ) AS ?n ) WHERE { { SELECT DISTINCT ( COUNT ( ?k ) AS ?l ) ?h WHERE { ?k rdf:type ?m . VALUES ( ?m ) { ( ontology:part ) ( ontology:cellular_component ) } } GROUP BY ?h } . FILTER ( ?l = 2 ) }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23200108
P703
Q631147
USER
Where is sensor histidine kinase    CBO1922 found ?
(Q23200108,P703,c(Q631147))
action filter_type
action find
entity Q23200108
relation P703
type Q631147
['Q23200108', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?m WHERE { resource:Q23200108 property:P703 ?m . ?m rdf:type ontology:Q631147 }
sensor histidine kinase    CBO1922
action filter_type
action find
entity sensor histidine kinase    CBO1922
relation found in taxon
type infraspecific name
['sensor histidine kinase    CBO1922', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?m WHERE { resource:sensor_histidine_kinase____CBO1922 property:found_in_taxon ?m . ?m rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102975
SYSTEM
Clostridium botulinum A str. ATCC 3502
Q21102975
(Q23200108,P703,c(Q631147))
action filter_type
action find
entity Q23200108
relation P703
type Q631147
Sensor histidine kinase CBO 1922 is found in [ANSWER]
['Q23200108', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?m WHERE { resource:Q23200108 property:P703 ?m . ?m rdf:type ontology:Q631147 }
Clostridium botulinum A str. ATCC 3502
Sensor histidine kinase CBO 1922 is found in Clostridium botulinum A str. ATCC 3502
Clostridium botulinum A str. ATCC 3502
action filter_type
action find
entity sensor histidine kinase    CBO1922
relation found in taxon
type infraspecific name
['sensor histidine kinase    CBO1922', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?m WHERE { resource:sensor_histidine_kinase____CBO1922 property:found_in_taxon ?m . ?m rdf:type ontology:infraspecific_name }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23200108
P702
Q181394
USER
Which nutrient does that nucleic acid sequence encode ?
(c(Q181394),P702,Q21102975)
action filter_type
action find_reverse
entity Q23200108
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q21102975']
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:Q181394 . ?b property:P702 resource:Q23200108 }
sensor histidine kinase    CBO1922
action filter_type
action find_reverse
entity sensor histidine kinase    CBO1922
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'Clostridium botulinum A str. ATCC 3502']
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:nutrient . ?b property:encoded_by resource:sensor_histidine_kinase____CBO1922 }
[]
nutrient
Q23529018
SYSTEM
sensor histidine kinase    CBO1922
Q23529018
(c(Q181394),P702,Q21102975)
action filter_type
action find_reverse
entity Q23200108
relation P702
type Q181394
That nucleic acid sequence encodes the sensor histidine kinase CBO1922
[{'concept': 'Q181394'}, 'P702', 'Q21102975']
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:Q181394 . ?b property:P702 resource:Q23200108 }
sensor histidine kinase    CBO1922
That nucleic acid sequence encodes the sensor histidine kinase CBO1922
sensor histidine kinase    CBO1922
action filter_type
action find_reverse
entity sensor histidine kinase    CBO1922
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'Clostridium botulinum A str. ATCC 3502']
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:nutrient . ?b property:encoded_by resource:sensor_histidine_kinase____CBO1922 }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q23621530
Q1057
USER
And also tell me about thrA    BL1274?
(Q23621530,P682,c(Q1057))
action filter_type
action find
entity Q23621530
relation P682
type Q1057
['Q23621530', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?c WHERE { resource:Q23621530 property:P682 ?c . ?c rdf:type ontology:Q1057 }
thrA    BL1274
action filter_type
action find
entity thrA    BL1274
relation biological process
type metabolic process
['thrA    BL1274', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?c WHERE { resource:thrA____BL1274 property:biological_process ?c . ?c rdf:type ontology:metabolic_process }
[]
metabolic process
Q14349764 Q14859896
SYSTEM
oxidation-reduction process, cellular amino acid metabolic process
Q14349764 Q14859896
(Q23621530,P682,c(Q1057))
action filter_type
action find
entity Q23621530
relation P682
type Q1057
[ANSWERS]
['Q23621530', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?c WHERE { resource:Q23621530 property:P682 ?c . ?c rdf:type ontology:Q1057 }
oxidation-reduction process cellular amino acid metabolic process
oxidation-reduction process cellular amino acid metabolic process
action filter_type
action find
entity thrA    BL1274
relation biological process
type metabolic process
['thrA    BL1274', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?c WHERE { resource:thrA____BL1274 property:biological_process ?c . ?c rdf:type ontology:metabolic_process }
[]
Quantitative Reasoning (All)
Quantitative|Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q8386 Q181394 Q181394
USER
Which nutrients can interact with atleast 32 drugs and nutrients ?
(c(Q181394),P129,c(Q8386)|c(Q181394))
action atleast
action union
action find_tuple_counts
relation P129
type Q181394
type Q8386
action find_tuple_counts
relation P129
type Q181394
type Q181394
value 32
[{'concept': 'Q181394'}, 'P129', [{'concept': 'Q8386'}, {'concept': 'Q181394'}]]
SELECT DISTINCT ?n WHERE { { SELECT DISTINCT ?n ( COUNT ( ?d ) AS ?l ) WHERE { { ?n property:P129 ?d . ?n rdf:type ontology:Q181394 . ?d rdf:type ontology:Q8386 } UNION { ?n property:P129 ?d . ?n rdf:type ontology:Q181394 . ?d rdf:type ontology:Q181394 } } GROUP BY ?n } . FILTER ( ?l >= 32 ) }
action atleast
action union
action find_tuple_counts
relation physically interacts with
type nutrient
type drug
action find_tuple_counts
relation physically interacts with
type nutrient
type nutrient
value 32
[{'concept': 'nutrient'}, 'physically interacts with', [{'concept': 'drug'}, {'concept': 'nutrient'}]]
SELECT DISTINCT ?n WHERE { { SELECT DISTINCT ?n ( COUNT ( ?d ) AS ?l ) WHERE { { ?n property:physically_interacts_with ?d . ?n rdf:type ontology:nutrient . ?d rdf:type ontology:drug } UNION { ?n property:physically_interacts_with ?d . ?n rdf:type ontology:nutrient . ?d rdf:type ontology:nutrient } } GROUP BY ?n } . FILTER ( ?l >= 32 ) }
[]
drug nutrient nutrient
Q2034004 Q1949517 Q21108118
SYSTEM
D(2) dopamine receptor, 5-hydroxytryptamine receptor 2A, 5-hydroxytryptamine receptor 2C
Q309513 Q21108118 Q21115043 Q1949517 Q2034004
(c(Q181394),P129,c(Q8386)|c(Q181394))
action atleast
action union
action find_tuple_counts
relation P129
type Q181394
type Q8386
action find_tuple_counts
relation P129
type Q181394
type Q181394
value 32
[ANSWERS] can interact with atleast 32 drugs and nutrients
[{'concept': 'Q181394'}, 'P129', [{'concept': 'Q8386'}, {'concept': 'Q181394'}]]
SELECT DISTINCT ?n WHERE { { SELECT DISTINCT ?n ( COUNT ( ?d ) AS ?l ) WHERE { { ?n property:P129 ?d . ?n rdf:type ontology:Q181394 . ?d rdf:type ontology:Q8386 } UNION { ?n property:P129 ?d . ?n rdf:type ontology:Q181394 . ?d rdf:type ontology:Q181394 } } GROUP BY ?n } . FILTER ( ?l >= 32 ) }
Histamine H1 receptor 5-hydroxytryptamine receptor 2C 5-hydroxytryptamine receptor 1A 5-hydroxytryptamine receptor 2A D(2) dopamine receptor
D(2) dopamine receptor, 5-hydroxytryptamine receptor 2A and 5-hydroxytryptamine receptor 2C can interact with atleast 32 drugs and nutrients
D(2) dopamine receptor 5-hydroxytryptamine receptor 2A 5-hydroxytryptamine receptor 2C
action atleast
action union
action find_tuple_counts
relation physically interacts with
type nutrient
type drug
action find_tuple_counts
relation physically interacts with
type nutrient
type nutrient
value 32
[{'concept': 'nutrient'}, 'physically interacts with', [{'concept': 'drug'}, {'concept': 'nutrient'}]]
SELECT DISTINCT ?n WHERE { { SELECT DISTINCT ?n ( COUNT ( ?d ) AS ?l ) WHERE { { ?n property:physically_interacts_with ?d . ?n rdf:type ontology:nutrient . ?d rdf:type ontology:drug } UNION { ?n property:physically_interacts_with ?d . ?n rdf:type ontology:nutrient . ?d rdf:type ontology:nutrient } } GROUP BY ?n } . FILTER ( ?l >= 32 ) }
[]