Simple Question (Direct)
Simple Question
Q27736720
P703
Q631147
USER
Which infraspecific name is RNA polymerase sigma factor SigM    Mb3941 found in ?
(Q27736720,P703,c(Q631147))
action filter_type
action find
entity Q27736720
relation P703
type Q631147
['Q27736720', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:Q631147 . resource:Q27736720 property:P703 ?b }
RNA polymerase sigma factor SigM    Mb3941
action filter_type
action find
entity RNA polymerase sigma factor SigM    Mb3941
relation found in taxon
type infraspecific name
['RNA polymerase sigma factor SigM    Mb3941', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:infraspecific_name . resource:RNA_polymerase_sigma_factor_SigM____Mb3941 property:found_in_taxon ?b }
[]
infraspecific name
Q21102984
SYSTEM
Mycobacterium bovis AF2122/97
Q21102984
(Q27736720,P703,c(Q631147))
action filter_type
action find
entity Q27736720
relation P703
type Q631147
[ANSWER] is RNA polymerase sigma factor SigM Mb3941 found in
['Q27736720', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:Q631147 . resource:Q27736720 property:P703 ?b }
Mycobacterium bovis AF2122/97
Mycobacterium bovis AF2122/97 is RNA polymerase sigma factor SigM Mb3941 found in
Mycobacterium bovis AF2122/97
action filter_type
action find
entity RNA polymerase sigma factor SigM    Mb3941
relation found in taxon
type infraspecific name
['RNA polymerase sigma factor SigM    Mb3941', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:infraspecific_name . resource:RNA_polymerase_sigma_factor_SigM____Mb3941 property:found_in_taxon ?b }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q27736720
P702
Q863908
USER
Which nucleic acid sequence encodes RNA polymerase sigma factor SigM    Mb3941 ?
(Q27736720,P702,c(Q863908))
action filter_type
action find
entity Q27736720
relation P702
type Q863908
['Q27736720', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?v WHERE { ?v rdf:type ontology:Q863908 . resource:Q27736720 property:P702 ?v }
RNA polymerase sigma factor SigM    Mb3941
action filter_type
action find
entity RNA polymerase sigma factor SigM    Mb3941
relation encoded by
type nucleic acid sequence
['RNA polymerase sigma factor SigM    Mb3941', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?v WHERE { ?v rdf:type ontology:nucleic_acid_sequence . resource:RNA_polymerase_sigma_factor_SigM____Mb3941 property:encoded_by ?v }
[]
nucleic acid sequence
Q23256928
SYSTEM
RNA polymerase sigma factor SigM    Mb3941
Q23256928
(Q27736720,P702,c(Q863908))
action filter_type
action find
entity Q27736720
relation P702
type Q863908
RNA polymerase sigma factor SigM Mb3941 encodes RNA polymerase sigma factor SigM Mb3941
['Q27736720', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?v WHERE { ?v rdf:type ontology:Q863908 . resource:Q27736720 property:P702 ?v }
RNA polymerase sigma factor SigM    Mb3941
RNA polymerase sigma factor SigM Mb3941 encodes RNA polymerase sigma factor SigM Mb3941
RNA polymerase sigma factor SigM    Mb3941
action filter_type
action find
entity RNA polymerase sigma factor SigM    Mb3941
relation encoded by
type nucleic acid sequence
['RNA polymerase sigma factor SigM    Mb3941', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?v WHERE { ?v rdf:type ontology:nucleic_acid_sequence . resource:RNA_polymerase_sigma_factor_SigM____Mb3941 property:encoded_by ?v }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23228994 Q23256928
P702
Q181394
USER
Which nutrients do RNA polymerase sigma factor SigM    Mb3941 or response regulator    spr1893 encode ?
OR((c(Q181394),P702,Q23256928), (c(Q181394),P702,Q23228994))
action filter_type
action union
action find_reverse
entity Q23256928
relation P702
action find_reverse
entity Q23228994
relation P702
type Q181394
{'OR': [[{'concept': 'Q181394'}, 'P702', 'Q23256928'], [{'concept': 'Q181394'}, 'P702', 'Q23228994']]}
SELECT DISTINCT ?x WHERE { { { ?x property:P702 resource:Q23228994 } UNION { ?x property:P702 resource:Q23256928 } } . ?x rdf:type ontology:Q181394 }
response regulator    spr1893 RNA polymerase sigma factor SigM    Mb3941
action filter_type
action union
action find_reverse
entity RNA polymerase sigma factor SigM    Mb3941
relation encoded by
action find_reverse
entity response regulator    spr1893
relation encoded by
type nutrient
{'OR': [[{'concept': 'nutrient'}, 'encoded by', 'RNA polymerase sigma factor SigM    Mb3941'], [{'concept': 'nutrient'}, 'encoded by', 'response regulator    spr1893']]}
SELECT DISTINCT ?x WHERE { { { ?x property:encoded_by resource:response_regulator____spr1893 } UNION { ?x property:encoded_by resource:RNA_polymerase_sigma_factor_SigM____Mb3941 } } . ?x rdf:type ontology:nutrient }
[]
nutrient
Q27736720 Q23494942
SYSTEM
RNA polymerase sigma factor SigM    Mb3941, response regulator    spr1893
Q27736720 Q23494942
OR((c(Q181394),P702,Q23256928), (c(Q181394),P702,Q23228994))
action filter_type
action union
action find_reverse
entity Q23256928
relation P702
action find_reverse
entity Q23228994
relation P702
type Q181394
[ANSWERS]
{'OR': [[{'concept': 'Q181394'}, 'P702', 'Q23256928'], [{'concept': 'Q181394'}, 'P702', 'Q23228994']]}
SELECT DISTINCT ?x WHERE { { { ?x property:P702 resource:Q23228994 } UNION { ?x property:P702 resource:Q23256928 } } . ?x rdf:type ontology:Q181394 }
RNA polymerase sigma factor SigM    Mb3941 response regulator    spr1893
RNA polymerase sigma factor SigM Mb3941 and response regulator spr1893 RNA polymerase sigma factor SigM Mb3941 or response regulator spr1893 encode
RNA polymerase sigma factor SigM    Mb3941 response regulator    spr1893
action filter_type
action union
action find_reverse
entity RNA polymerase sigma factor SigM    Mb3941
relation encoded by
action find_reverse
entity response regulator    spr1893
relation encoded by
type nutrient
{'OR': [[{'concept': 'nutrient'}, 'encoded by', 'RNA polymerase sigma factor SigM    Mb3941'], [{'concept': 'nutrient'}, 'encoded by', 'response regulator    spr1893']]}
SELECT DISTINCT ?x WHERE { { { ?x property:encoded_by resource:response_regulator____spr1893 } UNION { ?x property:encoded_by resource:RNA_polymerase_sigma_factor_SigM____Mb3941 } } . ?x rdf:type ontology:nutrient }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type
Q23494942
P702
Q863908
USER
How many nucleic acid sequences genes encode response regulator    spr1893 ?
(Q23494942,P702,c(Q863908))
action count
action filter_type
action find
entity Q23494942
relation P702
type Q863908
['Q23494942', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ( COUNT ( ?m ) AS ?w ) WHERE { resource:Q23494942 property:P702 ?m . ?m rdf:type ontology:Q863908 }
response regulator    spr1893
action count
action filter_type
action find
entity response regulator    spr1893
relation encoded by
type nucleic acid sequence
['response regulator    spr1893', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ( COUNT ( ?m ) AS ?w ) WHERE { resource:response_regulator____spr1893 property:encoded_by ?m . ?m rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
SYSTEM
1
Q23228994
(Q23494942,P702,c(Q863908))
action count
action filter_type
action find
entity Q23494942
relation P702
type Q863908
[ANSWER]
['Q23494942', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ( COUNT ( ?m ) AS ?w ) WHERE { resource:Q23494942 property:P702 ?m . ?m rdf:type ontology:Q863908 }
response regulator    spr1893
1
action count
action filter_type
action find
entity response regulator    spr1893
relation encoded by
type nucleic acid sequence
['response regulator    spr1893', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ( COUNT ( ?m ) AS ?w ) WHERE { resource:response_regulator____spr1893 property:encoded_by ?m . ?m rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23494942
P688
Q863908
USER
Which nucleic acid sequence encodes response regulator    spr1893 ?
(c(Q863908),P688,Q23494942)
action filter_type
action find_reverse
entity Q23494942
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q23494942']
SELECT DISTINCT ?s WHERE { ?s property:P688 resource:Q23494942 . ?s rdf:type ontology:Q863908 }
response regulator    spr1893
action filter_type
action find_reverse
entity response regulator    spr1893
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'response regulator    spr1893']
SELECT DISTINCT ?s WHERE { ?s property:encodes resource:response_regulator____spr1893 . ?s rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23228994
SYSTEM
response regulator    spr1893
Q23228994
(c(Q863908),P688,Q23494942)
action filter_type
action find_reverse
entity Q23494942
relation P688
type Q863908
Response regulator spr1893 encodes response regulator spr1893
[{'concept': 'Q863908'}, 'P688', 'Q23494942']
SELECT DISTINCT ?s WHERE { ?s property:P688 resource:Q23494942 . ?s rdf:type ontology:Q863908 }
response regulator    spr1893
Response regulator spr1893 encodes response regulator spr1893
response regulator    spr1893
action filter_type
action find_reverse
entity response regulator    spr1893
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'response regulator    spr1893']
SELECT DISTINCT ?s WHERE { ?s property:encodes resource:response_regulator____spr1893 . ?s rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23494942
P681
Q5058355
USER
What is a component of response regulator    spr1893 ?
(Q23494942,P681,c(Q5058355))
action filter_type
action find
entity Q23494942
relation P681
type Q5058355
['Q23494942', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?r WHERE { resource:Q23494942 property:P681 ?r . ?r rdf:type ontology:Q5058355 }
response regulator    spr1893
action filter_type
action find
entity response regulator    spr1893
relation cell component
type cellular component
['response regulator    spr1893', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?r WHERE { resource:response_regulator____spr1893 property:cell_component ?r . ?r rdf:type ontology:cellular_component }
[]
cellular component
Q3824358
SYSTEM
intracellular
Q3824358
(Q23494942,P681,c(Q5058355))
action filter_type
action find
entity Q23494942
relation P681
type Q5058355
A component of response regulator spr1893 is an [ANSWER]
['Q23494942', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?r WHERE { resource:Q23494942 property:P681 ?r . ?r rdf:type ontology:Q5058355 }
intracellular
A component of response regulator spr1893 is an intracellular
intracellular
action filter_type
action find
entity response regulator    spr1893
relation cell component
type cellular component
['response regulator    spr1893', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?r WHERE { resource:response_regulator____spr1893 property:cell_component ?r . ?r rdf:type ontology:cellular_component }
[]
Logical Reasoning (All)
Logical|Intersection|Single_Relation|Incomplete
Q21100307 Q23494942
P681
Q5058355
USER
And also Doublecortin domain-containing protein 2B
AND((Q23494942,P681,c(Q5058355)), (Q21100307,P681,c(Q5058355)))
action filter_type
action intersection
action find
entity Q23494942
relation P681
action find
entity Q21100307
relation P681
type Q5058355
{'AND': [['Q23494942', 'P681', {'concept': 'Q5058355'}], ['Q21100307', 'P681', {'concept': 'Q5058355'}]]}
SELECT DISTINCT ?d WHERE { resource:Q23494942 property:P681 ?d . resource:Q21100307 property:P681 ?d . ?d rdf:type ontology:Q5058355 }
Doublecortin domain-containing protein 2B response regulator    spr1893
action filter_type
action intersection
action find
entity response regulator    spr1893
relation cell component
action find
entity Doublecortin domain-containing protein 2B
relation cell component
type cellular component
{'AND': [['response regulator    spr1893', 'cell component', {'concept': 'cellular component'}], ['Doublecortin domain-containing protein 2B', 'cell component', {'concept': 'cellular component'}]]}
SELECT DISTINCT ?d WHERE { resource:response_regulator____spr1893 property:cell_component ?d . resource:Doublecortin_domain-containing_protein_2B property:cell_component ?d . ?d rdf:type ontology:cellular_component }
[]
cellular component
Q3824358
SYSTEM
intracellular
Q3824358
AND((Q23494942,P681,c(Q5058355)), (Q21100307,P681,c(Q5058355)))
action filter_type
action intersection
action find
entity Q23494942
relation P681
action find
entity Q21100307
relation P681
type Q5058355
[ANSWER]
{'AND': [['Q23494942', 'P681', {'concept': 'Q5058355'}], ['Q21100307', 'P681', {'concept': 'Q5058355'}]]}
SELECT DISTINCT ?d WHERE { resource:Q23494942 property:P681 ?d . resource:Q21100307 property:P681 ?d . ?d rdf:type ontology:Q5058355 }
intracellular
intracellular
action filter_type
action intersection
action find
entity response regulator    spr1893
relation cell component
action find
entity Doublecortin domain-containing protein 2B
relation cell component
type cellular component
{'AND': [['response regulator    spr1893', 'cell component', {'concept': 'cellular component'}], ['Doublecortin domain-containing protein 2B', 'cell component', {'concept': 'cellular component'}]]}
SELECT DISTINCT ?d WHERE { resource:response_regulator____spr1893 property:cell_component ?d . resource:Doublecortin_domain-containing_protein_2B property:cell_component ?d . ?d rdf:type ontology:cellular_component }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q3824358 Q23625859
P681
Q181394
USER
Is that one a cell component of translation elongation factor Ts    PSPTO_1535 ?
(Q23625859,P681,Q3824358)
action is_in
entity Q23625859
action find
entity Q3824358
relation P681
['Q23625859', 'P681', 'Q3824358']
ASK WHERE { resource:Q3824358 property:P681 resource:Q23625859 }
intracellular translation elongation factor Ts    PSPTO_1535
action is_in
entity translation elongation factor Ts    PSPTO_1535
action find
entity intracellular
relation cell component
['translation elongation factor Ts    PSPTO_1535', 'cell component', 'intracellular']
ASK WHERE { resource:intracellular property:cell_component resource:translation_elongation_factor_Ts____PSPTO_1535 }
[]
nutrient
SYSTEM
NO
(Q23625859,P681,Q3824358)
action is_in
entity Q23625859
action find
entity Q3824358
relation P681
[ANSWER]
['Q23625859', 'P681', 'Q3824358']
ASK WHERE { resource:Q3824358 property:P681 resource:Q23625859 }
No
action is_in
entity translation elongation factor Ts    PSPTO_1535
action find
entity intracellular
relation cell component
['translation elongation factor Ts    PSPTO_1535', 'cell component', 'intracellular']
ASK WHERE { resource:intracellular property:cell_component resource:translation_elongation_factor_Ts____PSPTO_1535 }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q22328004
Q20011319
USER
And what about cyanelle envelope?
(Q22328004,P361,c(Q20011319))
action filter_type
action find
entity Q22328004
relation P361
type Q20011319
['Q22328004', 'P361', {'concept': 'Q20011319'}]
SELECT DISTINCT ?l WHERE { resource:Q22328004 property:P361 ?l . ?l rdf:type ontology:Q20011319 }
cyanelle envelope
action filter_type
action find
entity cyanelle envelope
relation part of
type part of a plant
['cyanelle envelope', 'part of', {'concept': 'part of a plant'}]
SELECT DISTINCT ?l WHERE { resource:cyanelle_envelope property:part_of ?l . ?l rdf:type ontology:part_of_a_plant }
[]
part of a plant
Q22326490
SYSTEM
cyanelle
Q22326490
(Q22328004,P361,c(Q20011319))
action filter_type
action find
entity Q22328004
relation P361
type Q20011319
[ANSWER]
['Q22328004', 'P361', {'concept': 'Q20011319'}]
SELECT DISTINCT ?l WHERE { resource:Q22328004 property:P361 ?l . ?l rdf:type ontology:Q20011319 }
cyanelle
cyanelle
action filter_type
action find
entity cyanelle envelope
relation part of
type part of a plant
['cyanelle envelope', 'part of', {'concept': 'part of a plant'}]
SELECT DISTINCT ?l WHERE { resource:cyanelle_envelope property:part_of ?l . ?l rdf:type ontology:part_of_a_plant }
[]