Simple Question (Direct)
Simple Question
Q23556846
P703
Q631147
USER
What is the taxon to which sensor kinase    BPSS2314 belongs to ?
(Q23556846,P703,c(Q631147))
action filter_type
action find
entity Q23556846
relation P703
type Q631147
['Q23556846', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?j WHERE { resource:Q23556846 property:P703 ?j . ?j rdf:type ontology:Q631147 }
sensor kinase    BPSS2314
action filter_type
action find
entity sensor kinase    BPSS2314
relation found in taxon
type infraspecific name
['sensor kinase    BPSS2314', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?j WHERE { resource:sensor_kinase____BPSS2314 property:found_in_taxon ?j . ?j rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102995
SYSTEM
Burkholderia pseudomallei K96243
Q21102995
(Q23556846,P703,c(Q631147))
action filter_type
action find
entity Q23556846
relation P703
type Q631147
[ANSWER]
['Q23556846', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?j WHERE { resource:Q23556846 property:P703 ?j . ?j rdf:type ontology:Q631147 }
Burkholderia pseudomallei K96243
Burkholderia pseudomallei K96243
Burkholderia pseudomallei K96243
action filter_type
action find
entity sensor kinase    BPSS2314
relation found in taxon
type infraspecific name
['sensor kinase    BPSS2314', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?j WHERE { resource:sensor_kinase____BPSS2314 property:found_in_taxon ?j . ?j rdf:type ontology:infraspecific_name }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23556846
P681
Q5058355
USER
What is a component of sensor kinase    BPSS2314 ?
(Q23556846,P681,c(Q5058355))
action filter_type
action find
entity Q23556846
relation P681
type Q5058355
['Q23556846', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:Q5058355 . resource:Q23556846 property:P681 ?j }
sensor kinase    BPSS2314
action filter_type
action find
entity sensor kinase    BPSS2314
relation cell component
type cellular component
['sensor kinase    BPSS2314', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:cellular_component . resource:sensor_kinase____BPSS2314 property:cell_component ?j }
[]
cellular component
Q3824358
SYSTEM
intracellular
Q3824358
(Q23556846,P681,c(Q5058355))
action filter_type
action find
entity Q23556846
relation P681
type Q5058355
A component of sensor kinase BPSS2314 is an [ANSWER]
['Q23556846', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:Q5058355 . resource:Q23556846 property:P681 ?j }
intracellular
A component of sensor kinase BPSS2314 is an intracellular
intracellular
action filter_type
action find
entity sensor kinase    BPSS2314
relation cell component
type cellular component
['sensor kinase    BPSS2314', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:cellular_component . resource:sensor_kinase____BPSS2314 property:cell_component ?j }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q21494090
Q5058355
USER
And what about Centrosomal protein of 76 kDa?
(Q21494090,P681,c(Q5058355))
action filter_type
action find
entity Q21494090
relation P681
type Q5058355
['Q21494090', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?o WHERE { ?o rdf:type ontology:Q5058355 . resource:Q21494090 property:P681 ?o }
Centrosomal protein of 76 kDa
action filter_type
action find
entity Centrosomal protein of 76 kDa
relation cell component
type cellular component
['Centrosomal protein of 76 kDa', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?o WHERE { ?o rdf:type ontology:cellular_component . resource:Centrosomal_protein_of_76_kDa property:cell_component ?o }
[]
cellular component
Q420927
SYSTEM
protein complex
Q420927
(Q21494090,P681,c(Q5058355))
action filter_type
action find
entity Q21494090
relation P681
type Q5058355
[ANSWER]
['Q21494090', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?o WHERE { ?o rdf:type ontology:Q5058355 . resource:Q21494090 property:P681 ?o }
protein complex
protein complex
action filter_type
action find
entity Centrosomal protein of 76 kDa
relation cell component
type cellular component
['Centrosomal protein of 76 kDa', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?o WHERE { ?o rdf:type ontology:cellular_component . resource:Centrosomal_protein_of_76_kDa property:cell_component ?o }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q420927 Q21097435
P681
Q181394
USER
Does SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 have that one as its cell component ?
(Q21097435,P681,Q420927)
action is_in
entity Q420927
action find
entity Q21097435
relation P681
['Q21097435', 'P681', 'Q420927']
ASK WHERE { resource:Q21097435 property:P681 resource:Q420927 }
protein complex SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
action is_in
entity protein complex
action find
entity SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
relation cell component
['SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1', 'cell component', 'protein complex']
ASK WHERE { resource:SWI/SNF-related_matrix-associated_actin-dependent_regulator_of_chromatin_subfamily_B_member_1 property:cell_component resource:protein_complex }
[]
nutrient
SYSTEM
YES
(Q21097435,P681,Q420927)
action is_in
entity Q420927
action find
entity Q21097435
relation P681
[ANSWER]
['Q21097435', 'P681', 'Q420927']
ASK WHERE { resource:Q21097435 property:P681 resource:Q420927 }
Yes
action is_in
entity protein complex
action find
entity SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
relation cell component
['SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1', 'cell component', 'protein complex']
ASK WHERE { resource:SWI/SNF-related_matrix-associated_actin-dependent_regulator_of_chromatin_subfamily_B_member_1 property:cell_component resource:protein_complex }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q27747613 Q21097435
P702
Q863908
USER
Which nucleic acid sequences encodes SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 or alpha/beta hydrolase    MSMEG_5652 ?
OR((Q21097435,P702,c(Q863908)), (Q27747613,P702,c(Q863908)))
action filter_type
action union
action find
entity Q21097435
relation P702
action find
entity Q27747613
relation P702
type Q863908
{'OR': [['Q21097435', 'P702', {'concept': 'Q863908'}], ['Q27747613', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:Q863908 . { ?n property:P702 ?b . VALUES ( ?n ) { ( resource:Q21097435 ) ( resource:Q27747613 ) } } }
alpha/beta hydrolase    MSMEG_5652 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
action filter_type
action union
action find
entity SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
relation encoded by
action find
entity alpha/beta hydrolase    MSMEG_5652
relation encoded by
type nucleic acid sequence
{'OR': [['SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1', 'encoded by', {'concept': 'nucleic acid sequence'}], ['alpha/beta hydrolase    MSMEG_5652', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:nucleic_acid_sequence . { ?n property:encoded_by ?b . VALUES ( ?n ) { ( resource:SWI/SNF-related_matrix-associated_actin-dependent_regulator_of_chromatin_subfamily_B_member_1 ) ( resource:alpha/beta_hydrolase____MSMEG_5652 ) } } }
[]
nucleic acid sequence
Q18031596 Q23276170
SYSTEM
SMARCB1, alpha/beta hydrolase    MSMEG_5652
Q18031596 Q23276170
OR((Q21097435,P702,c(Q863908)), (Q27747613,P702,c(Q863908)))
action filter_type
action union
action find
entity Q21097435
relation P702
action find
entity Q27747613
relation P702
type Q863908
[ANSWERS]
{'OR': [['Q21097435', 'P702', {'concept': 'Q863908'}], ['Q27747613', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:Q863908 . { ?n property:P702 ?b . VALUES ( ?n ) { ( resource:Q21097435 ) ( resource:Q27747613 ) } } }
SMARCB1 alpha/beta hydrolase    MSMEG_5652
SMARCB1 and alpha/beta hydrolase MSMEG 5652 encode SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 or alpha/beta hydrolase MSMEG_5652
SMARCB1 alpha/beta hydrolase    MSMEG_5652
action filter_type
action union
action find
entity SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
relation encoded by
action find
entity alpha/beta hydrolase    MSMEG_5652
relation encoded by
type nucleic acid sequence
{'OR': [['SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1', 'encoded by', {'concept': 'nucleic acid sequence'}], ['alpha/beta hydrolase    MSMEG_5652', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:nucleic_acid_sequence . { ?n property:encoded_by ?b . VALUES ( ?n ) { ( resource:SWI/SNF-related_matrix-associated_actin-dependent_regulator_of_chromatin_subfamily_B_member_1 ) ( resource:alpha/beta_hydrolase____MSMEG_5652 ) } } }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23479860 Q21097435
P702
Q863908
USER
Which nucleic acid sequences genes encode SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 or phosphoribosylformylglycinamidine synthase I    SAOUHSC_01012 ?
OR((Q21097435,P702,c(Q863908)), (Q23479860,P702,c(Q863908)))
action filter_type
action union
action find
entity Q21097435
relation P702
action find
entity Q23479860
relation P702
type Q863908
{'OR': [['Q21097435', 'P702', {'concept': 'Q863908'}], ['Q23479860', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?z WHERE { { { resource:Q21097435 property:P702 ?z } UNION { resource:Q23479860 property:P702 ?z } } . ?z rdf:type ontology:Q863908 }
phosphoribosylformylglycinamidine synthase I    SAOUHSC_01012 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
action filter_type
action union
action find
entity SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
relation encoded by
action find
entity phosphoribosylformylglycinamidine synthase I    SAOUHSC_01012
relation encoded by
type nucleic acid sequence
{'OR': [['SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1', 'encoded by', {'concept': 'nucleic acid sequence'}], ['phosphoribosylformylglycinamidine synthase I    SAOUHSC_01012', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?z WHERE { { { resource:SWI/SNF-related_matrix-associated_actin-dependent_regulator_of_chromatin_subfamily_B_member_1 property:encoded_by ?z } UNION { resource:phosphoribosylformylglycinamidine_synthase_I____SAOUHSC_01012 property:encoded_by ?z } } . ?z rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18031596 Q23176164
SYSTEM
SMARCB1, phosphoribosylformylglycinamidine synthase I    SAOUHSC_01012
Q18031596 Q23176164
OR((Q21097435,P702,c(Q863908)), (Q23479860,P702,c(Q863908)))
action filter_type
action union
action find
entity Q21097435
relation P702
action find
entity Q23479860
relation P702
type Q863908
[ANSWERS]
{'OR': [['Q21097435', 'P702', {'concept': 'Q863908'}], ['Q23479860', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?z WHERE { { { resource:Q21097435 property:P702 ?z } UNION { resource:Q23479860 property:P702 ?z } } . ?z rdf:type ontology:Q863908 }
SMARCB1 phosphoribosylformylglycinamidine synthase I    SAOUHSC_01012
SMARCB1 and phosphoribosylformylglycinamidine synthase I SAOUHSC 01012 encode SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 or phosphoribosylformylglycinamidine synthase I SAOUHSC_01012
SMARCB1 phosphoribosylformylglycinamidine synthase I    SAOUHSC_01012
action filter_type
action union
action find
entity SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
relation encoded by
action find
entity phosphoribosylformylglycinamidine synthase I    SAOUHSC_01012
relation encoded by
type nucleic acid sequence
{'OR': [['SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1', 'encoded by', {'concept': 'nucleic acid sequence'}], ['phosphoribosylformylglycinamidine synthase I    SAOUHSC_01012', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?z WHERE { { { resource:SWI/SNF-related_matrix-associated_actin-dependent_regulator_of_chromatin_subfamily_B_member_1 property:encoded_by ?z } UNION { resource:phosphoribosylformylglycinamidine_synthase_I____SAOUHSC_01012 property:encoded_by ?z } } . ?z rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Mult. Entity|Indirect
Q18031596 Q23176164
P702
Q181394
USER
Which nutrients do SMARCB1 and phosphoribosylformylglycinamidine synthase I    SAOUHSC_01012 encode ?
(c(Q181394),P702,Q18031596) (c(Q181394),P702,Q23176164)
action union
action filter_type
action find_reverse
entity Q18031596
relation P702
type Q181394
action filter_type
action find_reverse
entity Q23176164
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q18031596'] [{'concept': 'Q181394'}, 'P702', 'Q23176164']
SELECT DISTINCT ?x WHERE { VALUES ( ?l ) { ( resource:Q18031596 ) ( resource:Q23176164 ) } . ?x property:P702 ?l }
SMARCB1 phosphoribosylformylglycinamidine synthase I    SAOUHSC_01012
action union
action filter_type
action find_reverse
entity SMARCB1
relation encoded by
type nutrient
action filter_type
action find_reverse
entity phosphoribosylformylglycinamidine synthase I    SAOUHSC_01012
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'SMARCB1'] [{'concept': 'nutrient'}, 'encoded by', 'phosphoribosylformylglycinamidine synthase I    SAOUHSC_01012']
SELECT DISTINCT ?x WHERE { VALUES ( ?l ) { ( resource:SMARCB1 ) ( resource:phosphoribosylformylglycinamidine_synthase_I____SAOUHSC_01012 ) } . ?x property:encoded_by ?l }
[]
nutrient
Q21150999 Q21097435 Q23479860
SYSTEM
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1, phosphoribosylformylglycinamidine synthase I    SAOUHSC_01012
Q21150999 Q21097435 Q23479860
(c(Q181394),P702,Q18031596) (c(Q181394),P702,Q23176164)
action union
action filter_type
action find_reverse
entity Q18031596
relation P702
type Q181394
action filter_type
action find_reverse
entity Q23176164
relation P702
type Q181394
[ANSWERS]
[{'concept': 'Q181394'}, 'P702', 'Q18031596'] [{'concept': 'Q181394'}, 'P702', 'Q23176164']
SELECT DISTINCT ?x WHERE { VALUES ( ?l ) { ( resource:Q18031596 ) ( resource:Q23176164 ) } . ?x property:P702 ?l }
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 phosphoribosylformylglycinamidine synthase I    SAOUHSC_01012
SMARCB 1 and phosphoribosylformylglycinamidine synthase I SAOUHSC_01012 encode the SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 and phosphoribosylformylglycinamidine synthase I SAOUHSC 01012
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 phosphoribosylformylglycinamidine synthase I    SAOUHSC_01012
action union
action filter_type
action find_reverse
entity SMARCB1
relation encoded by
type nutrient
action filter_type
action find_reverse
entity phosphoribosylformylglycinamidine synthase I    SAOUHSC_01012
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'SMARCB1'] [{'concept': 'nutrient'}, 'encoded by', 'phosphoribosylformylglycinamidine synthase I    SAOUHSC_01012']
SELECT DISTINCT ?x WHERE { VALUES ( ?l ) { ( resource:SMARCB1 ) ( resource:phosphoribosylformylglycinamidine_synthase_I____SAOUHSC_01012 ) } . ?x property:encoded_by ?l }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q18031596
P684
Q863908
USER
Which is the species that has SMARCB1 as its orthologous gene ?
(c(Q863908),P684,Q18031596)
action filter_type
action find
entity Q18031596
relation P684
type Q863908
[{'concept': 'Q863908'}, 'P684', 'Q18031596']
SELECT DISTINCT ?h WHERE { resource:Q18031596 property:P684 ?h . ?h rdf:type ontology:Q863908 }
SMARCB1
action filter_type
action find
entity SMARCB1
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'SMARCB1']
SELECT DISTINCT ?h WHERE { resource:SMARCB1 property:ortholog ?h . ?h rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18254180
SYSTEM
Smarcb1
Q18254180
(c(Q863908),P684,Q18031596)
action filter_type
action find
entity Q18031596
relation P684
type Q863908
[ANSWER] is the species that has SMARCB1 as its orthologous gene
[{'concept': 'Q863908'}, 'P684', 'Q18031596']
SELECT DISTINCT ?h WHERE { resource:Q18031596 property:P684 ?h . ?h rdf:type ontology:Q863908 }
Smarcb1
Smarcb1 is the species that has SMARCB1 as its orthologous gene
Smarcb1
action filter_type
action find
entity SMARCB1
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'SMARCB1']
SELECT DISTINCT ?h WHERE { resource:SMARCB1 property:ortholog ?h . ?h rdf:type ontology:nucleic_acid_sequence }
[]