Simple Question (Direct)
Simple Question
Q21110565
P703
Q16521
USER
Which taxon is Glutathione S-transferase A4 found in ?
(Q21110565,P703,c(Q16521))
action filter_type
action find
entity Q21110565
relation P703
type Q16521
['Q21110565', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?k WHERE { resource:Q21110565 property:P703 ?k . ?k rdf:type ontology:Q16521 }
Glutathione S-transferase A4
action filter_type
action find
entity Glutathione S-transferase A4
relation found in taxon
type taxon
['Glutathione S-transferase A4', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?k WHERE { resource:Glutathione_S-transferase_A4 property:found_in_taxon ?k . ?k rdf:type ontology:taxon }
[]
taxon
Q15978631
SYSTEM
Homo sapiens
Q15978631
(Q21110565,P703,c(Q16521))
action filter_type
action find
entity Q21110565
relation P703
type Q16521
Glutathione S-transferase A4 is found in [ANSWER]
['Q21110565', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?k WHERE { resource:Q21110565 property:P703 ?k . ?k rdf:type ontology:Q16521 }
Homo sapiens
Glutathione S-transferase A4 is found in Homo sapiens
Homo sapiens
action filter_type
action find
entity Glutathione S-transferase A4
relation found in taxon
type taxon
['Glutathione S-transferase A4', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?k WHERE { resource:Glutathione_S-transferase_A4 property:found_in_taxon ?k . ?k rdf:type ontology:taxon }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21110565
P682
Q3249551
USER
Which process is that nutrient involved in ?
(Q15978631,P682,c(Q3249551))
action filter_type
action find
entity Q21110565
relation P682
type Q3249551
['Q15978631', 'P682', {'concept': 'Q3249551'}]
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:Q3249551 . resource:Q21110565 property:P682 ?s }
Glutathione S-transferase A4
action filter_type
action find
entity Glutathione S-transferase A4
relation biological process
type process
['Homo sapiens', 'biological process', {'concept': 'process'}]
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:process . resource:Glutathione_S-transferase_A4 property:biological_process ?s }
[]
process
Q1057
SYSTEM
metabolic process
Q1057
(Q15978631,P682,c(Q3249551))
action filter_type
action find
entity Q21110565
relation P682
type Q3249551
That nutrient is involved in [ANSWER]
['Q15978631', 'P682', {'concept': 'Q3249551'}]
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:Q3249551 . resource:Q21110565 property:P682 ?s }
metabolic process
That nutrient is involved in metabolic process
metabolic process
action filter_type
action find
entity Glutathione S-transferase A4
relation biological process
type process
['Homo sapiens', 'biological process', {'concept': 'process'}]
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:process . resource:Glutathione_S-transferase_A4 property:biological_process ?s }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Single entity type
P828
Q7189713 Q3249551
USER
How many physiological conditions are the causes of atmost 1 process ?
(c(Q3249551),P828,c(Q7189713))
action count
action atmost
action find_reverse_tuple_counts
relation P828
type Q7189713
type Q3249551
value 1
[{'concept': 'Q3249551'}, 'P828', {'concept': 'Q7189713'}]
SELECT DISTINCT ( COUNT ( ?p ) AS ?o ) WHERE { { SELECT DISTINCT ?p ( COUNT ( ?l ) AS ?z ) WHERE { ?l property:P828 ?p . ?p rdf:type ontology:Q7189713 . ?l rdf:type ontology:Q3249551 } GROUP BY ?p } . FILTER ( ?z <= 1 ) }
action count
action atmost
action find_reverse_tuple_counts
relation has cause
type physiological condition
type process
value 1
[{'concept': 'process'}, 'has cause', {'concept': 'physiological condition'}]
SELECT DISTINCT ( COUNT ( ?p ) AS ?o ) WHERE { { SELECT DISTINCT ?p ( COUNT ( ?l ) AS ?z ) WHERE { ?l property:has_cause ?p . ?p rdf:type ontology:physiological_condition . ?l rdf:type ontology:process } GROUP BY ?p } . FILTER ( ?z <= 1 ) }
[]
physiological condition process
SYSTEM
5
Q2849606 Q193078 Q1478321 Q649122 Q339062
(c(Q3249551),P828,c(Q7189713))
action count
action atmost
action find_reverse_tuple_counts
relation P828
type Q7189713
type Q3249551
value 1
[ANSWER]
[{'concept': 'Q3249551'}, 'P828', {'concept': 'Q7189713'}]
SELECT DISTINCT ( COUNT ( ?p ) AS ?o ) WHERE { { SELECT DISTINCT ?p ( COUNT ( ?l ) AS ?z ) WHERE { ?l property:P828 ?p . ?p rdf:type ontology:Q7189713 . ?l rdf:type ontology:Q3249551 } GROUP BY ?p } . FILTER ( ?z <= 1 ) }
vasospasm trauma Spinal stenosis Jugular venous pressure decomposition
5
action count
action atmost
action find_reverse_tuple_counts
relation has cause
type physiological condition
type process
value 1
[{'concept': 'process'}, 'has cause', {'concept': 'physiological condition'}]
SELECT DISTINCT ( COUNT ( ?p ) AS ?o ) WHERE { { SELECT DISTINCT ?p ( COUNT ( ?l ) AS ?z ) WHERE { ?l property:has_cause ?p . ?p rdf:type ontology:physiological_condition . ?l rdf:type ontology:process } GROUP BY ?p } . FILTER ( ?z <= 1 ) }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Mult. entity type
Q15978631 Q1444
P361
Q15989253
USER
How many parts are parts of Homo sapiens or organ ?
(c(Q15989253),P361,Q15978631) (c(Q15989253),P361,Q1444)
action count
action union
action filter_type
action find_reverse
entity Q15978631
relation P361
type Q15989253
action filter_type
action find_reverse
entity Q1444
relation P361
type Q15989253
[{'concept': 'Q15989253'}, 'P361', 'Q15978631'] [{'concept': 'Q15989253'}, 'P361', 'Q1444']
SELECT DISTINCT ( COUNT ( ?f ) AS ?z ) WHERE { ?f property:P361 ?s . VALUES ( ?s ) { ( resource:Q15978631 ) ( resource:Q1444 ) } }
Homo sapiens organ
action count
action union
action filter_type
action find_reverse
entity Homo sapiens
relation part of
type part
action filter_type
action find_reverse
entity organ
relation part of
type part
[{'concept': 'part'}, 'part of', 'Homo sapiens'] [{'concept': 'part'}, 'part of', 'organ']
SELECT DISTINCT ( COUNT ( ?f ) AS ?z ) WHERE { ?f property:part_of ?s . VALUES ( ?s ) { ( resource:Homo_sapiens ) ( resource:organ ) } }
[]
part
SYSTEM
3
Q1510738 Q392573 Q2978691
(c(Q15989253),P361,Q15978631) (c(Q15989253),P361,Q1444)
action count
action union
action filter_type
action find_reverse
entity Q15978631
relation P361
type Q15989253
action filter_type
action find_reverse
entity Q1444
relation P361
type Q15989253
[ANSWER]
[{'concept': 'Q15989253'}, 'P361', 'Q15978631'] [{'concept': 'Q15989253'}, 'P361', 'Q1444']
SELECT DISTINCT ( COUNT ( ?f ) AS ?z ) WHERE { ?f property:P361 ?s . VALUES ( ?s ) { ( resource:Q15978631 ) ( resource:Q1444 ) } }
organ pipe Organ console Manual
3
action count
action union
action filter_type
action find_reverse
entity Homo sapiens
relation part of
type part
action filter_type
action find_reverse
entity organ
relation part of
type part
[{'concept': 'part'}, 'part of', 'Homo sapiens'] [{'concept': 'part'}, 'part of', 'organ']
SELECT DISTINCT ( COUNT ( ?f ) AS ?z ) WHERE { ?f property:part_of ?s . VALUES ( ?s ) { ( resource:Homo_sapiens ) ( resource:organ ) } }
[]
Logical Reasoning (All)
Logical|Intersection|Multiple_Relation
Q15978631 Q21110565
P703 P688
Q863908
USER
Which nucleic acid sequences encode Glutathione S-transferase A4 and are found in the taxon Homo sapiens ?
AND((c(Q863908),P688,Q21110565), (c(Q863908),P703,Q15978631))
action filter_type
action intersection
action find_reverse
entity Q21110565
relation P688
action find_reverse
entity Q15978631
relation P703
type Q863908
{'AND': [[{'concept': 'Q863908'}, 'P688', 'Q21110565'], [{'concept': 'Q863908'}, 'P703', 'Q15978631']]}
SELECT DISTINCT ?x WHERE { ?x property:P688 resource:Q21110565 . ?x property:P703 resource:Q15978631 . ?x rdf:type ontology:Q863908 }
Homo sapiens Glutathione S-transferase A4
action filter_type
action intersection
action find_reverse
entity Glutathione S-transferase A4
relation encodes
action find_reverse
entity Homo sapiens
relation found in taxon
type nucleic acid sequence
{'AND': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'Glutathione S-transferase A4'], [{'concept': 'nucleic acid sequence'}, 'found in taxon', 'Homo sapiens']]}
SELECT DISTINCT ?x WHERE { ?x property:encodes resource:Glutathione_S-transferase_A4 . ?x property:found_in_taxon resource:Homo_sapiens . ?x rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18015283
SYSTEM
GSTA4
Q18015283
AND((c(Q863908),P688,Q21110565), (c(Q863908),P703,Q15978631))
action filter_type
action intersection
action find_reverse
entity Q21110565
relation P688
action find_reverse
entity Q15978631
relation P703
type Q863908
[ANSWER] encode Glutathione S-transferase A4 and are found in the taxon Homo sapiens
{'AND': [[{'concept': 'Q863908'}, 'P688', 'Q21110565'], [{'concept': 'Q863908'}, 'P703', 'Q15978631']]}
SELECT DISTINCT ?x WHERE { ?x property:P688 resource:Q21110565 . ?x property:P703 resource:Q15978631 . ?x rdf:type ontology:Q863908 }
GSTA4
GSTA4 encode Glutathione S-transferase A4 and are found in the taxon Homo sapiens
GSTA4
action filter_type
action intersection
action find_reverse
entity Glutathione S-transferase A4
relation encodes
action find_reverse
entity Homo sapiens
relation found in taxon
type nucleic acid sequence
{'AND': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'Glutathione S-transferase A4'], [{'concept': 'nucleic acid sequence'}, 'found in taxon', 'Homo sapiens']]}
SELECT DISTINCT ?x WHERE { ?x property:encodes resource:Glutathione_S-transferase_A4 . ?x property:found_in_taxon resource:Homo_sapiens . ?x rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q24102958
P702
Q863908
USER
What encodes cobyrinic acid a,c-diamide synthase    NGR_c33430 ?
(Q24102958,P702,c(Q863908))
action filter_type
action find
entity Q24102958
relation P702
type Q863908
['Q24102958', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?w WHERE { resource:Q24102958 property:P702 ?w . ?w rdf:type ontology:Q863908 }
cobyrinic acid a,c-diamide synthase    NGR_c33430
action filter_type
action find
entity cobyrinic acid a,c-diamide synthase    NGR_c33430
relation encoded by
type nucleic acid sequence
['cobyrinic acid a,c-diamide synthase    NGR_c33430', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?w WHERE { resource:cobyrinic_acid_a,c-diamide_synthase____NGR_c33430 property:encoded_by ?w . ?w rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23318273
SYSTEM
cobyrinic acid a,c-diamide synthase    NGR_c33430
Q23318273
(Q24102958,P702,c(Q863908))
action filter_type
action find
entity Q24102958
relation P702
type Q863908
Cobyrinic acid a,c-diamide synthase NGR c33430 encodes cobyrinic acid a,c-diamide synthase NGR_c33430
['Q24102958', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?w WHERE { resource:Q24102958 property:P702 ?w . ?w rdf:type ontology:Q863908 }
cobyrinic acid a,c-diamide synthase    NGR_c33430
Cobyrinic acid a,c-diamide synthase NGR c33430 encodes cobyrinic acid a,c-diamide synthase NGR_c33430
cobyrinic acid a,c-diamide synthase    NGR_c33430
action filter_type
action find
entity cobyrinic acid a,c-diamide synthase    NGR_c33430
relation encoded by
type nucleic acid sequence
['cobyrinic acid a,c-diamide synthase    NGR_c33430', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?w WHERE { resource:cobyrinic_acid_a,c-diamide_synthase____NGR_c33430 property:encoded_by ?w . ?w rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|3 entities, 2 direct, 2(direct) are query entities, subject is indirect
Q23318273 Q23535396 Q24102958
P688
Q181394
USER
Does that nucleic acid sequence encodes major facilitator superfamily transporter    CD630_27070 and cobyrinic acid a,c-diamide synthase    NGR_c33430 ?
(Q23318273,P688,Q23535396) (Q23318273,P688,Q24102958)
action is_in
entity Q23318273
action intersection
action find_reverse
entity Q23535396
relation P688
action find_reverse
entity Q24102958
relation P688
['Q23318273', 'P688', 'Q23535396'] ['Q23318273', 'P688', 'Q24102958']
ASK WHERE { resource:Q23318273 property:P688 resource:Q23535396 . resource:Q23318273 property:P688 resource:Q24102958 }
cobyrinic acid a,c-diamide synthase    NGR_c33430 major facilitator superfamily transporter    CD630_27070 cobyrinic acid a,c-diamide synthase    NGR_c33430
action is_in
entity cobyrinic acid a,c-diamide synthase    NGR_c33430
action intersection
action find_reverse
entity major facilitator superfamily transporter    CD630_27070
relation encodes
action find_reverse
entity cobyrinic acid a,c-diamide synthase    NGR_c33430
relation encodes
['cobyrinic acid a,c-diamide synthase    NGR_c33430', 'encodes', 'major facilitator superfamily transporter    CD630_27070'] ['cobyrinic acid a,c-diamide synthase    NGR_c33430', 'encodes', 'cobyrinic acid a,c-diamide synthase    NGR_c33430']
ASK WHERE { resource:cobyrinic_acid_a,c-diamide_synthase____NGR_c33430 property:encodes resource:major_facilitator_superfamily_transporter____CD630_27070 . resource:cobyrinic_acid_a,c-diamide_synthase____NGR_c33430 property:encodes resource:cobyrinic_acid_a,c-diamide_synthase____NGR_c33430 }
[]
nutrient
SYSTEM
NO and YES respectively
(Q23318273,P688,Q23535396) (Q23318273,P688,Q24102958)
action is_in
entity Q23318273
action intersection
action find_reverse
entity Q23535396
relation P688
action find_reverse
entity Q24102958
relation P688
[ANSWER]
['Q23318273', 'P688', 'Q23535396'] ['Q23318273', 'P688', 'Q24102958']
ASK WHERE { resource:Q23318273 property:P688 resource:Q23535396 . resource:Q23318273 property:P688 resource:Q24102958 }
NO and YES respectively
action is_in
entity cobyrinic acid a,c-diamide synthase    NGR_c33430
action intersection
action find_reverse
entity major facilitator superfamily transporter    CD630_27070
relation encodes
action find_reverse
entity cobyrinic acid a,c-diamide synthase    NGR_c33430
relation encodes
['cobyrinic acid a,c-diamide synthase    NGR_c33430', 'encodes', 'major facilitator superfamily transporter    CD630_27070'] ['cobyrinic acid a,c-diamide synthase    NGR_c33430', 'encodes', 'cobyrinic acid a,c-diamide synthase    NGR_c33430']
ASK WHERE { resource:cobyrinic_acid_a,c-diamide_synthase____NGR_c33430 property:encodes resource:major_facilitator_superfamily_transporter____CD630_27070 . resource:cobyrinic_acid_a,c-diamide_synthase____NGR_c33430 property:encodes resource:cobyrinic_acid_a,c-diamide_synthase____NGR_c33430 }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q21110565 Q18972895
P702
Q863908
USER
Does PF3D7_1216500 gene encodes Glutathione S-transferase A4 ?
(Q21110565,P702,Q18972895)
action is_in
entity Q18972895
action find
entity Q21110565
relation P702
['Q21110565', 'P702', 'Q18972895']
ASK WHERE { resource:Q21110565 property:P702 resource:Q18972895 }
Glutathione S-transferase A4 PF3D7_1216500
action is_in
entity PF3D7_1216500
action find
entity Glutathione S-transferase A4
relation encoded by
['Glutathione S-transferase A4', 'encoded by', 'PF3D7_1216500']
ASK WHERE { resource:Glutathione_S-transferase_A4 property:encoded_by resource:PF3D7_1216500 }
[]
nucleic acid sequence
SYSTEM
NO
(Q21110565,P702,Q18972895)
action is_in
entity Q18972895
action find
entity Q21110565
relation P702
[ANSWER]
['Q21110565', 'P702', 'Q18972895']
ASK WHERE { resource:Q21110565 property:P702 resource:Q18972895 }
No
action is_in
entity PF3D7_1216500
action find
entity Glutathione S-transferase A4
relation encoded by
['Glutathione S-transferase A4', 'encoded by', 'PF3D7_1216500']
ASK WHERE { resource:Glutathione_S-transferase_A4 property:encoded_by resource:PF3D7_1216500 }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Mult. entity type
Q18015283 Q23283748
P702
Q181394
USER
How many nutrients are encoded by GSTA4 or sigma factor    SCO7192 ?
(c(Q181394),P702,Q18015283) (c(Q181394),P702,Q23283748)
action count
action union
action filter_type
action find_reverse
entity Q18015283
relation P702
type Q181394
action filter_type
action find_reverse
entity Q23283748
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q18015283'] [{'concept': 'Q181394'}, 'P702', 'Q23283748']
SELECT DISTINCT ( COUNT ( ?n ) AS ?u ) WHERE { ?n property:P702 ?e . VALUES ( ?e ) { ( resource:Q18015283 ) ( resource:Q23283748 ) } }
GSTA4 sigma factor    SCO7192
action count
action union
action filter_type
action find_reverse
entity GSTA4
relation encoded by
type nutrient
action filter_type
action find_reverse
entity sigma factor    SCO7192
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'GSTA4'] [{'concept': 'nutrient'}, 'encoded by', 'sigma factor    SCO7192']
SELECT DISTINCT ( COUNT ( ?n ) AS ?u ) WHERE { ?n property:encoded_by ?e . VALUES ( ?e ) { ( resource:GSTA4 ) ( resource:sigma_factor____SCO7192 ) } }
[]
nutrient
SYSTEM
2
Q27749889 Q21110565
(c(Q181394),P702,Q18015283) (c(Q181394),P702,Q23283748)
action count
action union
action filter_type
action find_reverse
entity Q18015283
relation P702
type Q181394
action filter_type
action find_reverse
entity Q23283748
relation P702
type Q181394
[ANSWER]
[{'concept': 'Q181394'}, 'P702', 'Q18015283'] [{'concept': 'Q181394'}, 'P702', 'Q23283748']
SELECT DISTINCT ( COUNT ( ?n ) AS ?u ) WHERE { ?n property:P702 ?e . VALUES ( ?e ) { ( resource:Q18015283 ) ( resource:Q23283748 ) } }
sigma factor    SCO7192 Glutathione S-transferase A4
2
action count
action union
action filter_type
action find_reverse
entity GSTA4
relation encoded by
type nutrient
action filter_type
action find_reverse
entity sigma factor    SCO7192
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'GSTA4'] [{'concept': 'nutrient'}, 'encoded by', 'sigma factor    SCO7192']
SELECT DISTINCT ( COUNT ( ?n ) AS ?u ) WHERE { ?n property:encoded_by ?e . VALUES ( ?e ) { ( resource:GSTA4 ) ( resource:sigma_factor____SCO7192 ) } }
[]