Simple Question (Direct)
Simple Question
Q23445045
P702
Q863908
USER
What encodes anaerobic glycerol-3-phosphate dehydrogenase subunit B    HI0684 ?
(Q23445045,P702,c(Q863908))
action filter_type
action find
entity Q23445045
relation P702
type Q863908
['Q23445045', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:Q863908 . resource:Q23445045 property:P702 ?s }
anaerobic glycerol-3-phosphate dehydrogenase subunit B    HI0684
action filter_type
action find
entity anaerobic glycerol-3-phosphate dehydrogenase subunit B    HI0684
relation encoded by
type nucleic acid sequence
['anaerobic glycerol-3-phosphate dehydrogenase subunit B    HI0684', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:nucleic_acid_sequence . resource:anaerobic_glycerol-3-phosphate_dehydrogenase_subunit_B____HI0684 property:encoded_by ?s }
[]
nucleic acid sequence
Q23326825
SYSTEM
anaerobic glycerol-3-phosphate dehydrogenase subunit B    HI0684
Q23326825
(Q23445045,P702,c(Q863908))
action filter_type
action find
entity Q23445045
relation P702
type Q863908
Anaerobic glycerol-3-phosphate dehydrogenase subunit B HI0684 encodes anaerobic glycerol-3-phosphate dehydrogenase subunit B HI0684
['Q23445045', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:Q863908 . resource:Q23445045 property:P702 ?s }
anaerobic glycerol-3-phosphate dehydrogenase subunit B    HI0684
Anaerobic glycerol-3-phosphate dehydrogenase subunit B HI0684 encodes anaerobic glycerol-3-phosphate dehydrogenase subunit B HI0684
anaerobic glycerol-3-phosphate dehydrogenase subunit B    HI0684
action filter_type
action find
entity anaerobic glycerol-3-phosphate dehydrogenase subunit B    HI0684
relation encoded by
type nucleic acid sequence
['anaerobic glycerol-3-phosphate dehydrogenase subunit B    HI0684', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:nucleic_acid_sequence . resource:anaerobic_glycerol-3-phosphate_dehydrogenase_subunit_B____HI0684 property:encoded_by ?s }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23326825
P688
Q181394
USER
What is encoded by that nucleic acid sequence ?
(Q23326825,P688,c(Q181394))
action filter_type
action find
entity Q23326825
relation P688
type Q181394
['Q23326825', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?w WHERE { resource:Q23326825 property:P688 ?w . ?w rdf:type ontology:Q181394 }
anaerobic glycerol-3-phosphate dehydrogenase subunit B    HI0684
action filter_type
action find
entity anaerobic glycerol-3-phosphate dehydrogenase subunit B    HI0684
relation encodes
type nutrient
['anaerobic glycerol-3-phosphate dehydrogenase subunit B    HI0684', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?w WHERE { resource:anaerobic_glycerol-3-phosphate_dehydrogenase_subunit_B____HI0684 property:encodes ?w . ?w rdf:type ontology:nutrient }
[]
nutrient
Q23445045
SYSTEM
anaerobic glycerol-3-phosphate dehydrogenase subunit B    HI0684
Q23445045
(Q23326825,P688,c(Q181394))
action filter_type
action find
entity Q23326825
relation P688
type Q181394
And anaerobic glycerol-3-phosphate dehydrogenase subunit B HI0684 is encoded by that nucleic acid sequence
['Q23326825', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?w WHERE { resource:Q23326825 property:P688 ?w . ?w rdf:type ontology:Q181394 }
anaerobic glycerol-3-phosphate dehydrogenase subunit B    HI0684
And anaerobic glycerol-3-phosphate dehydrogenase subunit B HI0684 is encoded by that nucleic acid sequence
anaerobic glycerol-3-phosphate dehydrogenase subunit B    HI0684
action filter_type
action find
entity anaerobic glycerol-3-phosphate dehydrogenase subunit B    HI0684
relation encodes
type nutrient
['anaerobic glycerol-3-phosphate dehydrogenase subunit B    HI0684', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?w WHERE { resource:anaerobic_glycerol-3-phosphate_dehydrogenase_subunit_B____HI0684 property:encodes ?w . ?w rdf:type ontology:nutrient }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q23118935
Q181394
USER
And also tell me about heat shock protein GrpE    AHA_2984?
(Q23118935,P688,c(Q181394))
action filter_type
action find
entity Q23118935
relation P688
type Q181394
['Q23118935', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?a WHERE { resource:Q23118935 property:P688 ?a . ?a rdf:type ontology:Q181394 }
heat shock protein GrpE    AHA_2984
action filter_type
action find
entity heat shock protein GrpE    AHA_2984
relation encodes
type nutrient
['heat shock protein GrpE    AHA_2984', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?a WHERE { resource:heat_shock_protein_GrpE____AHA_2984 property:encodes ?a . ?a rdf:type ontology:nutrient }
[]
nutrient
Q23430202
SYSTEM
heat shock protein GrpE    AHA_2984
Q23430202
(Q23118935,P688,c(Q181394))
action filter_type
action find
entity Q23118935
relation P688
type Q181394
[ANSWER]
['Q23118935', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?a WHERE { resource:Q23118935 property:P688 ?a . ?a rdf:type ontology:Q181394 }
heat shock protein GrpE    AHA_2984
heat shock protein GrpE    AHA_2984
action filter_type
action find
entity heat shock protein GrpE    AHA_2984
relation encodes
type nutrient
['heat shock protein GrpE    AHA_2984', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?a WHERE { resource:heat_shock_protein_GrpE____AHA_2984 property:encodes ?a . ?a rdf:type ontology:nutrient }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23118935
P703
Q631147
USER
What is the taxon to which that nucleic acid sequence belongs to ?
(Q23430202,P703,c(Q631147))
action filter_type
action find
entity Q23118935
relation P703
type Q631147
['Q23430202', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?w WHERE { ?w rdf:type ontology:Q631147 . resource:Q23118935 property:P703 ?w }
heat shock protein GrpE    AHA_2984
action filter_type
action find
entity heat shock protein GrpE    AHA_2984
relation found in taxon
type infraspecific name
['heat shock protein GrpE    AHA_2984', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?w WHERE { ?w rdf:type ontology:infraspecific_name . resource:heat_shock_protein_GrpE____AHA_2984 property:found_in_taxon ?w }
[]
infraspecific name
Q21102944
SYSTEM
Aeromonas hydrophila subsp. hydrophila ATCC 7966
Q21102944
(Q23430202,P703,c(Q631147))
action filter_type
action find
entity Q23118935
relation P703
type Q631147
[ANSWER]
['Q23430202', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?w WHERE { ?w rdf:type ontology:Q631147 . resource:Q23118935 property:P703 ?w }
Aeromonas hydrophila subsp. hydrophila ATCC 7966
Aeromonas hydrophila subsp. hydrophila ATCC 7966
Aeromonas hydrophila subsp. hydrophila ATCC 7966
action filter_type
action find
entity heat shock protein GrpE    AHA_2984
relation found in taxon
type infraspecific name
['heat shock protein GrpE    AHA_2984', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?w WHERE { ?w rdf:type ontology:infraspecific_name . resource:heat_shock_protein_GrpE____AHA_2984 property:found_in_taxon ?w }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q23085021
Q631147
USER
And also tell me about glutamate/aspartate ABC transporter ATPase    b0652?
(Q23085021,P703,c(Q631147))
action filter_type
action find
entity Q23085021
relation P703
type Q631147
['Q23085021', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?l WHERE { resource:Q23085021 property:P703 ?l . ?l rdf:type ontology:Q631147 }
glutamate/aspartate ABC transporter ATPase    b0652
action filter_type
action find
entity glutamate/aspartate ABC transporter ATPase    b0652
relation found in taxon
type infraspecific name
['glutamate/aspartate ABC transporter ATPase    b0652', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?l WHERE { resource:glutamate/aspartate_ABC_transporter_ATPase____b0652 property:found_in_taxon ?l . ?l rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102938
SYSTEM
Escherichia coli str. K-12 substr. MG1655
Q21102938
(Q23085021,P703,c(Q631147))
action filter_type
action find
entity Q23085021
relation P703
type Q631147
[ANSWER]
['Q23085021', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?l WHERE { resource:Q23085021 property:P703 ?l . ?l rdf:type ontology:Q631147 }
Escherichia coli str. K-12 substr. MG1655
Escherichia coli str. K-12 substr. MG1655
action filter_type
action find
entity glutamate/aspartate ABC transporter ATPase    b0652
relation found in taxon
type infraspecific name
['glutamate/aspartate ABC transporter ATPase    b0652', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?l WHERE { resource:glutamate/aspartate_ABC_transporter_ATPase____b0652 property:found_in_taxon ?l . ?l rdf:type ontology:infraspecific_name }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q21102938 Q23086930
P703
Q863908
USER
Is putative M28A family peptidase    b2271 found in that infraspecific name ?
(Q23086930,P703,Q21102938)
action is_in
entity Q21102938
action find
entity Q23086930
relation P703
['Q23086930', 'P703', 'Q21102938']
ASK WHERE { resource:Q23086930 property:P703 resource:Q21102938 }
Escherichia coli str. K-12 substr. MG1655 putative M28A family peptidase    b2271
action is_in
entity Escherichia coli str. K-12 substr. MG1655
action find
entity putative M28A family peptidase    b2271
relation found in taxon
['putative M28A family peptidase    b2271', 'found in taxon', 'Escherichia coli str. K-12 substr. MG1655']
ASK WHERE { resource:putative_M28A_family_peptidase____b2271 property:found_in_taxon resource:Escherichia_coli_str._K-12_substr._MG1655 }
[]
nucleic acid sequence
SYSTEM
YES
(Q23086930,P703,Q21102938)
action is_in
entity Q21102938
action find
entity Q23086930
relation P703
[ANSWER]
['Q23086930', 'P703', 'Q21102938']
ASK WHERE { resource:Q23086930 property:P703 resource:Q21102938 }
Yes
action is_in
entity Escherichia coli str. K-12 substr. MG1655
action find
entity putative M28A family peptidase    b2271
relation found in taxon
['putative M28A family peptidase    b2271', 'found in taxon', 'Escherichia coli str. K-12 substr. MG1655']
ASK WHERE { resource:putative_M28A_family_peptidase____b2271 property:found_in_taxon resource:Escherichia_coli_str._K-12_substr._MG1655 }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q23430202 Q17861256
P702
Q863908
USER
Does CENPA encode heat shock protein GrpE    AHA_2984 ?
(Q23430202,P702,Q17861256)
action is_in
entity Q17861256
action find
entity Q23430202
relation P702
['Q23430202', 'P702', 'Q17861256']
ASK WHERE { resource:Q23430202 property:P702 resource:Q17861256 }
heat shock protein GrpE    AHA_2984 CENPA
action is_in
entity CENPA
action find
entity heat shock protein GrpE    AHA_2984
relation encoded by
['heat shock protein GrpE    AHA_2984', 'encoded by', 'CENPA']
ASK WHERE { resource:heat_shock_protein_GrpE____AHA_2984 property:encoded_by resource:CENPA }
[]
nucleic acid sequence
SYSTEM
NO
(Q23430202,P702,Q17861256)
action is_in
entity Q17861256
action find
entity Q23430202
relation P702
[ANSWER]
['Q23430202', 'P702', 'Q17861256']
ASK WHERE { resource:Q23430202 property:P702 resource:Q17861256 }
No
action is_in
entity CENPA
action find
entity heat shock protein GrpE    AHA_2984
relation encoded by
['heat shock protein GrpE    AHA_2984', 'encoded by', 'CENPA']
ASK WHERE { resource:heat_shock_protein_GrpE____AHA_2984 property:encoded_by resource:CENPA }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23321225 Q23445045
P703
Q631147
USER
Which infraspecific names are anaerobic glycerol-3-phosphate dehydrogenase subunit B    HI0684 or 3-hydroxyisobutyrate dehydrogenase    NGR_b20850 found in ?
OR((Q23445045,P703,c(Q631147)), (Q23321225,P703,c(Q631147)))
action filter_type
action union
action find
entity Q23445045
relation P703
action find
entity Q23321225
relation P703
type Q631147
{'OR': [['Q23445045', 'P703', {'concept': 'Q631147'}], ['Q23321225', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?g WHERE { { { resource:Q23445045 property:P703 ?g } UNION { resource:Q23321225 property:P703 ?g } } . ?g rdf:type ontology:Q631147 }
3-hydroxyisobutyrate dehydrogenase    NGR_b20850 anaerobic glycerol-3-phosphate dehydrogenase subunit B    HI0684
action filter_type
action union
action find
entity anaerobic glycerol-3-phosphate dehydrogenase subunit B    HI0684
relation found in taxon
action find
entity 3-hydroxyisobutyrate dehydrogenase    NGR_b20850
relation found in taxon
type infraspecific name
{'OR': [['anaerobic glycerol-3-phosphate dehydrogenase subunit B    HI0684', 'found in taxon', {'concept': 'infraspecific name'}], ['3-hydroxyisobutyrate dehydrogenase    NGR_b20850', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?g WHERE { { { resource:anaerobic_glycerol-3-phosphate_dehydrogenase_subunit_B____HI0684 property:found_in_taxon ?g } UNION { resource:3-hydroxyisobutyrate_dehydrogenase____NGR_b20850 property:found_in_taxon ?g } } . ?g rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q23309229 Q21102948
SYSTEM
Sinorhizobium fredii NGR234, Haemophilus influenzae Rd KW20
Q23309229 Q21102948
OR((Q23445045,P703,c(Q631147)), (Q23321225,P703,c(Q631147)))
action filter_type
action union
action find
entity Q23445045
relation P703
action find
entity Q23321225
relation P703
type Q631147
[ANSWERS] are anaerobic glycerol-3-phosphate dehydrogenase subunit B HI0684 or 3-hydroxyisobutyrate dehydrogenase NGR_b20850 found in
{'OR': [['Q23445045', 'P703', {'concept': 'Q631147'}], ['Q23321225', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?g WHERE { { { resource:Q23445045 property:P703 ?g } UNION { resource:Q23321225 property:P703 ?g } } . ?g rdf:type ontology:Q631147 }
Sinorhizobium fredii NGR234 Haemophilus influenzae Rd KW20
Sinorhizobium fredii NGR234 and Haemophilus influenzae Rd KW20 are anaerobic glycerol-3-phosphate dehydrogenase subunit B HI0684 or 3-hydroxyisobutyrate dehydrogenase NGR_b20850 found in
Sinorhizobium fredii NGR234 Haemophilus influenzae Rd KW20
action filter_type
action union
action find
entity anaerobic glycerol-3-phosphate dehydrogenase subunit B    HI0684
relation found in taxon
action find
entity 3-hydroxyisobutyrate dehydrogenase    NGR_b20850
relation found in taxon
type infraspecific name
{'OR': [['anaerobic glycerol-3-phosphate dehydrogenase subunit B    HI0684', 'found in taxon', {'concept': 'infraspecific name'}], ['3-hydroxyisobutyrate dehydrogenase    NGR_b20850', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?g WHERE { { { resource:anaerobic_glycerol-3-phosphate_dehydrogenase_subunit_B____HI0684 property:found_in_taxon ?g } UNION { resource:3-hydroxyisobutyrate_dehydrogenase____NGR_b20850 property:found_in_taxon ?g } } . ?g rdf:type ontology:infraspecific_name }
[]