Simple Question (Direct)
Simple Question
Q23602145
P703
Q16521
USER
Which taxon is Two-component system sensor histidine kinase RprX    FP1827 found in ?
(Q23602145,P703,c(Q16521))
action filter_type
action find
entity Q23602145
relation P703
type Q16521
['Q23602145', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?o WHERE { resource:Q23602145 property:P703 ?o . ?o rdf:type ontology:Q16521 }
Two-component system sensor histidine kinase RprX    FP1827
action filter_type
action find
entity Two-component system sensor histidine kinase RprX    FP1827
relation found in taxon
type taxon
['Two-component system sensor histidine kinase RprX    FP1827', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?o WHERE { resource:Two-component_system_sensor_histidine_kinase_RprX____FP1827 property:found_in_taxon ?o . ?o rdf:type ontology:taxon }
[]
taxon
Q21398021
SYSTEM
Flavobacterium psychrophilum JIP02/86
Q21398021
(Q23602145,P703,c(Q16521))
action filter_type
action find
entity Q23602145
relation P703
type Q16521
[ANSWER] is Two-component system sensor histidine kinase RprX FP1827 found in
['Q23602145', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?o WHERE { resource:Q23602145 property:P703 ?o . ?o rdf:type ontology:Q16521 }
Flavobacterium psychrophilum JIP02/86
Flavobacterium psychrophilum JIP02/86 is Two-component system sensor histidine kinase RprX FP1827 found in
Flavobacterium psychrophilum JIP02/86
action filter_type
action find
entity Two-component system sensor histidine kinase RprX    FP1827
relation found in taxon
type taxon
['Two-component system sensor histidine kinase RprX    FP1827', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?o WHERE { resource:Two-component_system_sensor_histidine_kinase_RprX____FP1827 property:found_in_taxon ?o . ?o rdf:type ontology:taxon }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23602145
P682
Q1057
USER
Which metabolic process is that nutrient involved in ?
(Q21398021,P682,c(Q1057))
action filter_type
action find
entity Q23602145
relation P682
type Q1057
['Q21398021', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?g WHERE { resource:Q23602145 property:P682 ?g . ?g rdf:type ontology:Q1057 }
Two-component system sensor histidine kinase RprX    FP1827
action filter_type
action find
entity Two-component system sensor histidine kinase RprX    FP1827
relation biological process
type metabolic process
['Flavobacterium psychrophilum JIP02/86', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?g WHERE { resource:Two-component_system_sensor_histidine_kinase_RprX____FP1827 property:biological_process ?g . ?g rdf:type ontology:metabolic_process }
[]
metabolic process
Q14863351
SYSTEM
signal transduction by protein phosphorylation
Q14863351
(Q21398021,P682,c(Q1057))
action filter_type
action find
entity Q23602145
relation P682
type Q1057
That nutrient is the [ANSWER]
['Q21398021', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?g WHERE { resource:Q23602145 property:P682 ?g . ?g rdf:type ontology:Q1057 }
signal transduction by protein phosphorylation
That nutrient is the signal transduction by protein phosphorylation
signal transduction by protein phosphorylation
action filter_type
action find
entity Two-component system sensor histidine kinase RprX    FP1827
relation biological process
type metabolic process
['Flavobacterium psychrophilum JIP02/86', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?g WHERE { resource:Two-component_system_sensor_histidine_kinase_RprX____FP1827 property:biological_process ?g . ?g rdf:type ontology:metabolic_process }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q21124355 Q23602145
P681
Q5058355
USER
Which cellular components are the cell components of Two-component system sensor histidine kinase RprX    FP1827 or Ras-related protein Ral-B ?
OR((Q23602145,P681,c(Q5058355)), (Q21124355,P681,c(Q5058355)))
action filter_type
action union
action find
entity Q23602145
relation P681
action find
entity Q21124355
relation P681
type Q5058355
{'OR': [['Q23602145', 'P681', {'concept': 'Q5058355'}], ['Q21124355', 'P681', {'concept': 'Q5058355'}]]}
SELECT DISTINCT ?b WHERE { { { resource:Q23602145 property:P681 ?b } UNION { resource:Q21124355 property:P681 ?b } } . ?b rdf:type ontology:Q5058355 }
Ras-related protein Ral-B Two-component system sensor histidine kinase RprX    FP1827
action filter_type
action union
action find
entity Two-component system sensor histidine kinase RprX    FP1827
relation cell component
action find
entity Ras-related protein Ral-B
relation cell component
type cellular component
{'OR': [['Two-component system sensor histidine kinase RprX    FP1827', 'cell component', {'concept': 'cellular component'}], ['Ras-related protein Ral-B', 'cell component', {'concept': 'cellular component'}]]}
SELECT DISTINCT ?b WHERE { { { resource:Two-component_system_sensor_histidine_kinase_RprX____FP1827 property:cell_component ?b } UNION { resource:Ras-related_protein_Ral-B property:cell_component ?b } } . ?b rdf:type ontology:cellular_component }
[]
cellular component
Q29548 Q14762605 Q3824358
SYSTEM
plasma membrane, midbody, intracellular
Q29548 Q14762605 Q3824358
OR((Q23602145,P681,c(Q5058355)), (Q21124355,P681,c(Q5058355)))
action filter_type
action union
action find
entity Q23602145
relation P681
action find
entity Q21124355
relation P681
type Q5058355
The [ANSWERS] are the cell components of Two-component system sensor histidine kinase RprX FP1827 or Ras-related protein Ral-B
{'OR': [['Q23602145', 'P681', {'concept': 'Q5058355'}], ['Q21124355', 'P681', {'concept': 'Q5058355'}]]}
SELECT DISTINCT ?b WHERE { { { resource:Q23602145 property:P681 ?b } UNION { resource:Q21124355 property:P681 ?b } } . ?b rdf:type ontology:Q5058355 }
plasma membrane midbody intracellular
The plasma membrane, midbody and intracellular are the cell components of Two-component system sensor histidine kinase RprX FP1827 or Ras-related protein Ral-B
plasma membrane midbody intracellular
action filter_type
action union
action find
entity Two-component system sensor histidine kinase RprX    FP1827
relation cell component
action find
entity Ras-related protein Ral-B
relation cell component
type cellular component
{'OR': [['Two-component system sensor histidine kinase RprX    FP1827', 'cell component', {'concept': 'cellular component'}], ['Ras-related protein Ral-B', 'cell component', {'concept': 'cellular component'}]]}
SELECT DISTINCT ?b WHERE { { { resource:Two-component_system_sensor_histidine_kinase_RprX____FP1827 property:cell_component ?b } UNION { resource:Ras-related_protein_Ral-B property:cell_component ?b } } . ?b rdf:type ontology:cellular_component }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21124355
P702
Q863908
USER
What encodes Ras-related protein Ral-B?
(Q29548,P702,c(Q863908)) (Q14762605,P702,c(Q863908)) (Q3824358,P702,c(Q863908))
action filter_type
action find
entity Q21124355
relation P702
type Q863908
['Q29548', 'P702', {'concept': 'Q863908'}] ['Q14762605', 'P702', {'concept': 'Q863908'}] ['Q3824358', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?u WHERE { resource:Q21124355 property:P702 ?u . ?u rdf:type ontology:Q863908 }
Ras-related protein Ral-B
action filter_type
action find
entity Ras-related protein Ral-B
relation encoded by
type nucleic acid sequence
['plasma membrane', 'encoded by', {'concept': 'nucleic acid sequence'}] ['midbody', 'encoded by', {'concept': 'nucleic acid sequence'}] ['intracellular', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?u WHERE { resource:Ras-related_protein_Ral-B property:encoded_by ?u . ?u rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18031026
SYSTEM
RALB
Q18031026
(Q29548,P702,c(Q863908)) (Q14762605,P702,c(Q863908)) (Q3824358,P702,c(Q863908))
action filter_type
action find
entity Q21124355
relation P702
type Q863908
Protein [ANSWER] encodes Ras-related protein Ral-B
['Q29548', 'P702', {'concept': 'Q863908'}] ['Q14762605', 'P702', {'concept': 'Q863908'}] ['Q3824358', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?u WHERE { resource:Q21124355 property:P702 ?u . ?u rdf:type ontology:Q863908 }
RALB
Protein RALB encodes Ras-related protein Ral-B
RALB
action filter_type
action find
entity Ras-related protein Ral-B
relation encoded by
type nucleic acid sequence
['plasma membrane', 'encoded by', {'concept': 'nucleic acid sequence'}] ['midbody', 'encoded by', {'concept': 'nucleic acid sequence'}] ['intracellular', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?u WHERE { resource:Ras-related_protein_Ral-B property:encoded_by ?u . ?u rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18031026
P688
Q181394
USER
What does that nucleic acid sequence encode ?
(Q18031026,P688,c(Q181394))
action filter_type
action find
entity Q18031026
relation P688
type Q181394
['Q18031026', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?u WHERE { resource:Q18031026 property:P688 ?u . ?u rdf:type ontology:Q181394 }
RALB
action filter_type
action find
entity RALB
relation encodes
type nutrient
['RALB', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?u WHERE { resource:RALB property:encodes ?u . ?u rdf:type ontology:nutrient }
[]
nutrient
Q21124355
SYSTEM
Ras-related protein Ral-B
Q21124355
(Q18031026,P688,c(Q181394))
action filter_type
action find
entity Q18031026
relation P688
type Q181394
That nucleic acid sequence encodes the [ANSWER]
['Q18031026', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?u WHERE { resource:Q18031026 property:P688 ?u . ?u rdf:type ontology:Q181394 }
Ras-related protein Ral-B
That nucleic acid sequence encodes the Ras-related protein Ral-B
Ras-related protein Ral-B
action filter_type
action find
entity RALB
relation encodes
type nutrient
['RALB', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?u WHERE { resource:RALB property:encodes ?u . ?u rdf:type ontology:nutrient }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q21124355 Q899827
P681
Q5058355
USER
Is endomembrane system a component of Ras-related protein Ral-B ?
(Q21124355,P681,Q899827)
action is_in
entity Q899827
action find
entity Q21124355
relation P681
['Q21124355', 'P681', 'Q899827']
ASK WHERE { resource:Q21124355 property:P681 resource:Q899827 }
Ras-related protein Ral-B endomembrane system
action is_in
entity endomembrane system
action find
entity Ras-related protein Ral-B
relation cell component
['Ras-related protein Ral-B', 'cell component', 'endomembrane system']
ASK WHERE { resource:Ras-related_protein_Ral-B property:cell_component resource:endomembrane_system }
[]
cellular component
SYSTEM
NO
(Q21124355,P681,Q899827)
action is_in
entity Q899827
action find
entity Q21124355
relation P681
[ANSWER]
['Q21124355', 'P681', 'Q899827']
ASK WHERE { resource:Q21124355 property:P681 resource:Q899827 }
No
action is_in
entity endomembrane system
action find
entity Ras-related protein Ral-B
relation cell component
['Ras-related protein Ral-B', 'cell component', 'endomembrane system']
ASK WHERE { resource:Ras-related_protein_Ral-B property:cell_component resource:endomembrane_system }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23491911 Q23602145
P681
Q5058355
USER
Which cellular components are components of Two-component system sensor histidine kinase RprX    FP1827 or ATP synthase F0F1 subunit epsilon    SMU_1527 ?
OR((Q23602145,P681,c(Q5058355)), (Q23491911,P681,c(Q5058355)))
action filter_type
action union
action find
entity Q23602145
relation P681
action find
entity Q23491911
relation P681
type Q5058355
{'OR': [['Q23602145', 'P681', {'concept': 'Q5058355'}], ['Q23491911', 'P681', {'concept': 'Q5058355'}]]}
SELECT DISTINCT ?q WHERE { { VALUES ( ?u ) { ( resource:Q23602145 ) ( resource:Q23491911 ) } . ?u property:P681 ?q } . ?q rdf:type ontology:Q5058355 }
ATP synthase F0F1 subunit epsilon    SMU_1527 Two-component system sensor histidine kinase RprX    FP1827
action filter_type
action union
action find
entity Two-component system sensor histidine kinase RprX    FP1827
relation cell component
action find
entity ATP synthase F0F1 subunit epsilon    SMU_1527
relation cell component
type cellular component
{'OR': [['Two-component system sensor histidine kinase RprX    FP1827', 'cell component', {'concept': 'cellular component'}], ['ATP synthase F0F1 subunit epsilon    SMU_1527', 'cell component', {'concept': 'cellular component'}]]}
SELECT DISTINCT ?q WHERE { { VALUES ( ?u ) { ( resource:Two-component_system_sensor_histidine_kinase_RprX____FP1827 ) ( resource:ATP_synthase_F0F1_subunit_epsilon____SMU_1527 ) } . ?u property:cell_component ?q } . ?q rdf:type ontology:cellular_component }
[]
cellular component
Q29548 Q3824358
SYSTEM
plasma membrane, intracellular
Q29548 Q3824358
OR((Q23602145,P681,c(Q5058355)), (Q23491911,P681,c(Q5058355)))
action filter_type
action union
action find
entity Q23602145
relation P681
action find
entity Q23491911
relation P681
type Q5058355
The [ANSWERS] are components of Two-component system sensor histidine kinase RprX FP1827 or ATP synthase F0F1 subunit epsilon SMU_1527
{'OR': [['Q23602145', 'P681', {'concept': 'Q5058355'}], ['Q23491911', 'P681', {'concept': 'Q5058355'}]]}
SELECT DISTINCT ?q WHERE { { VALUES ( ?u ) { ( resource:Q23602145 ) ( resource:Q23491911 ) } . ?u property:P681 ?q } . ?q rdf:type ontology:Q5058355 }
plasma membrane intracellular
The plasma membrane and intracellular are components of Two-component system sensor histidine kinase RprX FP1827 or ATP synthase F0F1 subunit epsilon SMU_1527
plasma membrane intracellular
action filter_type
action union
action find
entity Two-component system sensor histidine kinase RprX    FP1827
relation cell component
action find
entity ATP synthase F0F1 subunit epsilon    SMU_1527
relation cell component
type cellular component
{'OR': [['Two-component system sensor histidine kinase RprX    FP1827', 'cell component', {'concept': 'cellular component'}], ['ATP synthase F0F1 subunit epsilon    SMU_1527', 'cell component', {'concept': 'cellular component'}]]}
SELECT DISTINCT ?q WHERE { { VALUES ( ?u ) { ( resource:Two-component_system_sensor_histidine_kinase_RprX____FP1827 ) ( resource:ATP_synthase_F0F1_subunit_epsilon____SMU_1527 ) } . ?u property:cell_component ?q } . ?q rdf:type ontology:cellular_component }
[]