Simple Question (Direct)
Simple Question
Q23480598
P682
Q1057
USER
Which metabolic process is accessory gene regulator C    SE1637 involved in ?
(Q23480598,P682,c(Q1057))
action filter_type
action find
entity Q23480598
relation P682
type Q1057
['Q23480598', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?b WHERE { resource:Q23480598 property:P682 ?b . ?b rdf:type ontology:Q1057 }
accessory gene regulator C    SE1637
action filter_type
action find
entity accessory gene regulator C    SE1637
relation biological process
type metabolic process
['accessory gene regulator C    SE1637', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?b WHERE { resource:accessory_gene_regulator_C____SE1637 property:biological_process ?b . ?b rdf:type ontology:metabolic_process }
[]
metabolic process
Q14863351
SYSTEM
signal transduction by protein phosphorylation
Q14863351
(Q23480598,P682,c(Q1057))
action filter_type
action find
entity Q23480598
relation P682
type Q1057
Which metabolic process is accessory gene regulator C SE1637 involved in
['Q23480598', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?b WHERE { resource:Q23480598 property:P682 ?b . ?b rdf:type ontology:Q1057 }
signal transduction by protein phosphorylation
Which metabolic process is accessory gene regulator C SE1637 involved in
signal transduction by protein phosphorylation
action filter_type
action find
entity accessory gene regulator C    SE1637
relation biological process
type metabolic process
['accessory gene regulator C    SE1637', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?b WHERE { resource:accessory_gene_regulator_C____SE1637 property:biological_process ?b . ?b rdf:type ontology:metabolic_process }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23480598
P688
Q863908
USER
Which nucleic acid sequence encodes accessory gene regulator C    SE1637 ?
(c(Q863908),P688,Q23480598)
action filter_type
action find_reverse
entity Q23480598
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q23480598']
SELECT DISTINCT ?m WHERE { ?m property:P688 resource:Q23480598 . ?m rdf:type ontology:Q863908 }
accessory gene regulator C    SE1637
action filter_type
action find_reverse
entity accessory gene regulator C    SE1637
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'accessory gene regulator C    SE1637']
SELECT DISTINCT ?m WHERE { ?m property:encodes resource:accessory_gene_regulator_C____SE1637 . ?m rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23177644
SYSTEM
accessory gene regulator C    SE1637
Q23177644
(c(Q863908),P688,Q23480598)
action filter_type
action find_reverse
entity Q23480598
relation P688
type Q863908
Accessory gene regulator C SE1637 encodes accessory gene regulator C SE1637
[{'concept': 'Q863908'}, 'P688', 'Q23480598']
SELECT DISTINCT ?m WHERE { ?m property:P688 resource:Q23480598 . ?m rdf:type ontology:Q863908 }
accessory gene regulator C    SE1637
Accessory gene regulator C SE1637 encodes accessory gene regulator C SE1637
accessory gene regulator C    SE1637
action filter_type
action find_reverse
entity accessory gene regulator C    SE1637
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'accessory gene regulator C    SE1637']
SELECT DISTINCT ?m WHERE { ?m property:encodes resource:accessory_gene_regulator_C____SE1637 . ?m rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23177644
P703
Q631147
USER
Which taxon does that nucleic acid sequence belong to ?
(Q23177644,P703,c(Q631147))
action filter_type
action find
entity Q23177644
relation P703
type Q631147
['Q23177644', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?p WHERE { resource:Q23177644 property:P703 ?p . ?p rdf:type ontology:Q631147 }
accessory gene regulator C    SE1637
action filter_type
action find
entity accessory gene regulator C    SE1637
relation found in taxon
type infraspecific name
['accessory gene regulator C    SE1637', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?p WHERE { resource:accessory_gene_regulator_C____SE1637 property:found_in_taxon ?p . ?p rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102957
SYSTEM
Staphylococcus epidermidis ATCC 12228
Q21102957
(Q23177644,P703,c(Q631147))
action filter_type
action find
entity Q23177644
relation P703
type Q631147
That nucleic acid sequence belongs to [ANSWER]
['Q23177644', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?p WHERE { resource:Q23177644 property:P703 ?p . ?p rdf:type ontology:Q631147 }
Staphylococcus epidermidis ATCC 12228
That nucleic acid sequence belongs to Staphylococcus epidermidis ATCC 12228
Staphylococcus epidermidis ATCC 12228
action filter_type
action find
entity accessory gene regulator C    SE1637
relation found in taxon
type infraspecific name
['accessory gene regulator C    SE1637', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?p WHERE { resource:accessory_gene_regulator_C____SE1637 property:found_in_taxon ?p . ?p rdf:type ontology:infraspecific_name }
[]
Comparative Reasoning (All)
Comparative|More/Less|Single entity type|Indirect
P703
Q631147 Q863908
USER
Which infraspecific names are greater number of nucleic acid sequences found in than that infraspecific name ?
(c(Q863908),P703,c(Q631147))
action greater
action find_reverse_tuple_counts
relation P703
type Q631147
type Q863908
action count
action filter_type
action find
entity Q21102957
relation P703
type Q631147
[{'concept': 'Q863908'}, 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?t WHERE { { SELECT DISTINCT ?t ( COUNT ( ?f ) AS ?b ) WHERE { ?f property:P703 ?t . ?t rdf:type ontology:Q631147 . ?f rdf:type ontology:Q863908 } GROUP BY ?t } . { SELECT DISTINCT ( COUNT ( ?r ) AS ?v ) WHERE { ?r rdf:type ontology:Q631147 . resource:Q21102957 property:P703 ?r } } . FILTER ( ?b > ?v ) }
action greater
action find_reverse_tuple_counts
relation found in taxon
type infraspecific name
type nucleic acid sequence
action count
action filter_type
action find
entity Staphylococcus epidermidis ATCC 12228
relation found in taxon
type infraspecific name
[{'concept': 'nucleic acid sequence'}, 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?t WHERE { { SELECT DISTINCT ?t ( COUNT ( ?f ) AS ?b ) WHERE { ?f property:found_in_taxon ?t . ?t rdf:type ontology:infraspecific_name . ?f rdf:type ontology:nucleic_acid_sequence } GROUP BY ?t } . { SELECT DISTINCT ( COUNT ( ?r ) AS ?v ) WHERE { ?r rdf:type ontology:infraspecific_name . resource:Staphylococcus_epidermidis_ATCC_12228 property:found_in_taxon ?r } } . FILTER ( ?b > ?v ) }
[]
infraspecific name nucleic acid sequence
Q21102919 Q21079559 Q21102993
SYSTEM
Legionella pneumophila subsp. pneumophila str. Philadelphia 1, Salinibacter ruber DSM 13855, Burkholderia mallei ATCC 23344
Q21102993 Q21102995 Q21102996 Q21102997 Q21102998 Q21102999 Q27510868 Q21065229 Q21079489 Q21102919 Q21102943 Q21102942 Q21102941 Q21102940 Q21102947 Q21102946 Q21102920 Q21102965 Q21102966 Q21102930 Q21102987 Q21102925 Q21102924 Q21102927 Q21102986 Q21102928 Q21102974 Q21102918 Q21102988 Q21079490 Q21079491 Q21102984 Q21102983 Q21102981 Q21102973 Q21102944 Q21102954 Q21102955 Q21102956 Q21102950 Q21102978 Q21102953 Q21102976 Q23309229 Q21102975 Q21102972 Q21102959 Q21102970 Q21102971 Q21064863 Q21102931 Q21102937 Q21102934 Q21102979 Q21079559 Q21102938 Q21102939
(c(Q863908),P703,c(Q631147))
action greater
action find_reverse_tuple_counts
relation P703
type Q631147
type Q863908
action count
action filter_type
action find
entity Q21102957
relation P703
type Q631147
[ANSWERS] are greater number of nucleic acid sequences found in than that infraspecific name
[{'concept': 'Q863908'}, 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?t WHERE { { SELECT DISTINCT ?t ( COUNT ( ?f ) AS ?b ) WHERE { ?f property:P703 ?t . ?t rdf:type ontology:Q631147 . ?f rdf:type ontology:Q863908 } GROUP BY ?t } . { SELECT DISTINCT ( COUNT ( ?r ) AS ?v ) WHERE { ?r rdf:type ontology:Q631147 . resource:Q21102957 property:P703 ?r } } . FILTER ( ?b > ?v ) }
Burkholderia mallei ATCC 23344 Burkholderia pseudomallei K96243 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Salmonella enterica subsp. enterica serovar Typhi str. CT18 Amycolatopsis mediterranei U32 Geobacter sulfurreducens PCA Saccharomyces cerevisiae S288c Leptospira interrogans serovar Lai str. 56601 Pseudomonas putida KT2440 Legionella pneumophila subsp. pneumophila str. Philadelphia 1 Yersinia pestis CO92 Yersinia enterocolitica subsp. enterocolitica 8081 Shigella flexneri 2a str. 301 Shigella dysenteriae Sd197 Vibrio parahaemolyticus RIMD 2210633 Vibrio fischeri ES114 Acinetobacter pittii PHEA-2 Enterococcus faecalis V583 Enterococcus faecium DO Escherichia coli O157:H7 str. Sakai Mycobacterium tuberculosis H37Rv Bordetella pertussis Tohama I Bordetella bronchiseptica 253 Enterobacter aerogenes KCTC 2190 Mycobacterium smegmatis str. MC2 155 Enterobacter cloacae subsp. cloacae ATCC 13047 Clostridium botulinum A str. Hall Sinorhizobium meliloti 1021 Streptomyces coelicolor A3(2) Pseudomonas syringae pv. syringae B728a Xanthomonas campestris pv. campestris str. ATCC 33913 Mycobacterium bovis AF2122/97 Corynebacterium glutamicum ATCC 13032 Listeria monocytogenes EGD-e Clostridium acetobutylicum ATCC 824 Aeromonas hydrophila subsp. hydrophila ATCC 7966 Rhodospirillum rubrum ATCC 11170 Chloroflexus aurantiacus J-10-fl Staphylococcus aureus subsp. aureus NCTC 8325 Bacteroides fragilis YCH46 Lactobacillus casei ATCC 334 Rhodobacter sphaeroides 2.4.1 Peptoclostridium difficile 630 Sinorhizobium fredii NGR234 Clostridium botulinum A str. ATCC 3502 Bacillus thuringiensis serovar konkukian str. 97-27 Deinococcus radiodurans R1 Bacillus cereus ATCC 14579 Bacillus subtilis subsp. subtilis str. 168 Bordetella parapertussis Bpp5 Escherichia coli UMN026 Escherichia coli O104:H4 str. 2011C-3493 Escherichia coli O83:H1 str. NRG 857C Lactobacillus plantarum WCFS1 Salinibacter ruber DSM 13855 Escherichia coli str. K-12 substr. MG1655 Klebsiella pneumoniae subsp. pneumoniae HS11286
Legionella pneumophila subsp. pneumophila str. Philadelphia 1, Salinibacter ruber DSM 13855 and Burkholderia mallei ATCC 23344 are greater number of nucleic acid sequences found in than that infraspecific name
Legionella pneumophila subsp. pneumophila str. Philadelphia 1 Salinibacter ruber DSM 13855 Burkholderia mallei ATCC 23344
action greater
action find_reverse_tuple_counts
relation found in taxon
type infraspecific name
type nucleic acid sequence
action count
action filter_type
action find
entity Staphylococcus epidermidis ATCC 12228
relation found in taxon
type infraspecific name
[{'concept': 'nucleic acid sequence'}, 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?t WHERE { { SELECT DISTINCT ?t ( COUNT ( ?f ) AS ?b ) WHERE { ?f property:found_in_taxon ?t . ?t rdf:type ontology:infraspecific_name . ?f rdf:type ontology:nucleic_acid_sequence } GROUP BY ?t } . { SELECT DISTINCT ( COUNT ( ?r ) AS ?v ) WHERE { ?r rdf:type ontology:infraspecific_name . resource:Staphylococcus_epidermidis_ATCC_12228 property:found_in_taxon ?r } } . FILTER ( ?b > ?v ) }
[]