Simple Question (Direct)
Simple Question
Q23551377
P681
Q5058355
USER
Which cellular components are the components of GTP-binding protein LepA    THEYE_A0099 ?
(Q23551377,P681,c(Q5058355))
action filter_type
action find
entity Q23551377
relation P681
type Q5058355
['Q23551377', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?r WHERE { resource:Q23551377 property:P681 ?r . ?r rdf:type ontology:Q5058355 }
GTP-binding protein LepA    THEYE_A0099
action filter_type
action find
entity GTP-binding protein LepA    THEYE_A0099
relation cell component
type cellular component
['GTP-binding protein LepA    THEYE_A0099', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?r WHERE { resource:GTP-binding_protein_LepA____THEYE_A0099 property:cell_component ?r . ?r rdf:type ontology:cellular_component }
[]
cellular component
Q29548 Q3824358
SYSTEM
plasma membrane, intracellular
Q29548 Q3824358
(Q23551377,P681,c(Q5058355))
action filter_type
action find
entity Q23551377
relation P681
type Q5058355
The [ANSWERS] are the components of GTP-binding protein LepA THEYE_A0099
['Q23551377', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?r WHERE { resource:Q23551377 property:P681 ?r . ?r rdf:type ontology:Q5058355 }
plasma membrane intracellular
The plasma membrane and intracellular are the components of GTP-binding protein LepA THEYE_A0099
plasma membrane intracellular
action filter_type
action find
entity GTP-binding protein LepA    THEYE_A0099
relation cell component
type cellular component
['GTP-binding protein LepA    THEYE_A0099', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?r WHERE { resource:GTP-binding_protein_LepA____THEYE_A0099 property:cell_component ?r . ?r rdf:type ontology:cellular_component }
[]
Simple Question (Direct)
Simple Question|Mult. Entity|Indirect
Q29548 Q3824358
P361
Q5058355
USER
Which cellular components are plasma membrane and intracellular a component of ?
(Q29548,P361,c(Q5058355)) (Q3824358,P361,c(Q5058355))
action union
action filter_type
action find
entity Q29548
relation P361
type Q5058355
action filter_type
action find
entity Q3824358
relation P361
type Q5058355
['Q29548', 'P361', {'concept': 'Q5058355'}] ['Q3824358', 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ?e WHERE { { resource:Q29548 property:P361 ?e . ?e rdf:type ontology:Q5058355 } UNION { ?e rdf:type ontology:Q5058355 . resource:Q3824358 property:P361 ?e } }
plasma membrane intracellular
action union
action filter_type
action find
entity plasma membrane
relation part of
type cellular component
action filter_type
action find
entity intracellular
relation part of
type cellular component
['plasma membrane', 'part of', {'concept': 'cellular component'}] ['intracellular', 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ?e WHERE { { resource:plasma_membrane property:part_of ?e . ?e rdf:type ontology:cellular_component } UNION { ?e rdf:type ontology:cellular_component . resource:intracellular property:part_of ?e } }
[]
cellular component
Q899827 Q22330431 Q14864171
SYSTEM
endomembrane system, unencapsulated part of cell, cell periphery
Q899827 Q22330431 Q14864171 Q22330431
(Q29548,P361,c(Q5058355)) (Q3824358,P361,c(Q5058355))
action union
action filter_type
action find
entity Q29548
relation P361
type Q5058355
action filter_type
action find
entity Q3824358
relation P361
type Q5058355
[ANSWERS] are plasma membrane and intracellular a component of
['Q29548', 'P361', {'concept': 'Q5058355'}] ['Q3824358', 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ?e WHERE { { resource:Q29548 property:P361 ?e . ?e rdf:type ontology:Q5058355 } UNION { ?e rdf:type ontology:Q5058355 . resource:Q3824358 property:P361 ?e } }
endomembrane system unencapsulated part of cell cell periphery unencapsulated part of cell
Endomembrane system, unencapsulated part of cell and cell periphery are plasma membrane and intracellular a component of
endomembrane system unencapsulated part of cell cell periphery
action union
action filter_type
action find
entity plasma membrane
relation part of
type cellular component
action filter_type
action find
entity intracellular
relation part of
type cellular component
['plasma membrane', 'part of', {'concept': 'cellular component'}] ['intracellular', 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ?e WHERE { { resource:plasma_membrane property:part_of ?e . ?e rdf:type ontology:cellular_component } UNION { ?e rdf:type ontology:cellular_component . resource:intracellular property:part_of ?e } }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23551377
P703
Q16521
USER
Which taxon is GTP-binding protein LepA    THEYE_A0099 found in ?
(Q23551377,P703,c(Q16521))
action filter_type
action find
entity Q23551377
relation P703
type Q16521
['Q23551377', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?x WHERE { resource:Q23551377 property:P703 ?x . ?x rdf:type ontology:Q16521 }
GTP-binding protein LepA    THEYE_A0099
action filter_type
action find
entity GTP-binding protein LepA    THEYE_A0099
relation found in taxon
type taxon
['GTP-binding protein LepA    THEYE_A0099', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?x WHERE { resource:GTP-binding_protein_LepA____THEYE_A0099 property:found_in_taxon ?x . ?x rdf:type ontology:taxon }
[]
taxon
Q23309243
SYSTEM
Thermodesulfovibrio yellowstonii DSM 11347
Q23309243
(Q23551377,P703,c(Q16521))
action filter_type
action find
entity Q23551377
relation P703
type Q16521
[ANSWER] is GTP-binding protein LepA THEYE_A0099 found in
['Q23551377', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?x WHERE { resource:Q23551377 property:P703 ?x . ?x rdf:type ontology:Q16521 }
Thermodesulfovibrio yellowstonii DSM 11347
Thermodesulfovibrio yellowstonii DSM 11347 is GTP-binding protein LepA THEYE_A0099 found in
Thermodesulfovibrio yellowstonii DSM 11347
action filter_type
action find
entity GTP-binding protein LepA    THEYE_A0099
relation found in taxon
type taxon
['GTP-binding protein LepA    THEYE_A0099', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?x WHERE { resource:GTP-binding_protein_LepA____THEYE_A0099 property:found_in_taxon ?x . ?x rdf:type ontology:taxon }
[]
Simple Question (Ellipsis)
Incomplete|object parent is changed, subject and predicate remain same
Q23551377
Q5058355
USER
And which cellular component?
(Q23551377,P681,c(Q5058355))
action filter_type
action find
entity Q23551377
relation P681
type Q5058355
['Q23551377', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?l WHERE { resource:Q23551377 property:P681 ?l . ?l rdf:type ontology:Q5058355 }
GTP-binding protein LepA    THEYE_A0099
action filter_type
action find
entity GTP-binding protein LepA    THEYE_A0099
relation cell component
type cellular component
['GTP-binding protein LepA    THEYE_A0099', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?l WHERE { resource:GTP-binding_protein_LepA____THEYE_A0099 property:cell_component ?l . ?l rdf:type ontology:cellular_component }
[]
cellular component
Q29548 Q3824358
SYSTEM
plasma membrane, intracellular
Q29548 Q3824358
(Q23551377,P681,c(Q5058355))
action filter_type
action find
entity Q23551377
relation P681
type Q5058355
[ANSWERS]
['Q23551377', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?l WHERE { resource:Q23551377 property:P681 ?l . ?l rdf:type ontology:Q5058355 }
plasma membrane intracellular
plasma membrane intracellular
action filter_type
action find
entity GTP-binding protein LepA    THEYE_A0099
relation cell component
type cellular component
['GTP-binding protein LepA    THEYE_A0099', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?l WHERE { resource:GTP-binding_protein_LepA____THEYE_A0099 property:cell_component ?l . ?l rdf:type ontology:cellular_component }
[]
Logical Reasoning (All)
Logical|Intersection|Single_Relation
Q79899 Q899827
P681
Q181394
USER
Which nutrients have endomembrane system and cytoplasm as their cell component ?
AND((c(Q181394),P681,Q899827), (c(Q181394),P681,Q79899))
action filter_type
action intersection
action find_reverse
entity Q899827
relation P681
action find_reverse
entity Q79899
relation P681
type Q181394
{'AND': [[{'concept': 'Q181394'}, 'P681', 'Q899827'], [{'concept': 'Q181394'}, 'P681', 'Q79899']]}
SELECT DISTINCT ?l WHERE { ?l property:P681 resource:Q899827 . ?l property:P681 resource:Q79899 . ?l rdf:type ontology:Q181394 }
cytoplasm endomembrane system
action filter_type
action intersection
action find_reverse
entity endomembrane system
relation cell component
action find_reverse
entity cytoplasm
relation cell component
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'cell component', 'endomembrane system'], [{'concept': 'nutrient'}, 'cell component', 'cytoplasm']]}
SELECT DISTINCT ?l WHERE { ?l property:cell_component resource:endomembrane_system . ?l property:cell_component resource:cytoplasm . ?l rdf:type ontology:nutrient }
[]
nutrient
Q21113626 Q21499008 Q21495850 Q21494740 Q22679756 Q21985381 Q21127080 Q21112484 Q21157260 Q21988191
SYSTEM
Some of them are Guanine nucleotide exchange factor DBS, ADP-ribosylation factor 1, Huntingtin-interacting protein 1-related protein, Microtubule-associated proteins 1A/1B light chain 3A, Solute carrier family 2, facilitated glucose transporter member 12, Ras-related C3 botulinum toxin substrate 3, E3 ubiquitin-protein ligase RNF167, Phosphatidylinositol 4-kinase beta, Dematin, Tyrosine-protein kinase JAK1
Q21989922 Q21112493 Q21096448 Q21110691 Q21113626 Q21987015 Q21494741 Q21494740 Q21100612 Q21990557 Q21100297 Q21983468 Q21127080 Q21989342 Q419973 Q21988191 Q21119366 Q21110458 Q21984174 Q21990942 Q14914518 Q27549829 Q22679756 Q21991659 Q21122383 Q21122038 Q27549010 Q21207645 Q21113783 Q21497339 Q21990230 Q21101107 Q27547505 Q21983880 Q21495843 Q22677209 Q21106566 Q21988687 Q27547248 Q21987386 Q3162114 Q21989089 Q21103125 Q21118092 Q21989891 Q21494218 Q6155967 Q21118795 Q21123468 Q6155969 Q21988300 Q21495850 Q21154420 Q285613 Q21988437 Q21111566 Q21113548 Q14914500 Q21109325 Q21115093 Q21106350 Q21121744 Q21123472 Q15332867 Q21499008 Q21131887 Q21111825 Q21111570 Q21117115 Q21981604 Q21491058 Q21117636 Q21126500 Q21988158 Q21985131 Q21124712 Q21120855 Q21992121 Q21113274 Q21981043 Q21990129 Q21113400 Q21114707 Q21126821 Q21134821 Q21123458 Q21988002 Q21497475 Q27548184 Q21106271 Q21990069 Q14914138 Q21105465 Q21105464 Q21981508 Q21105466 Q21105469 Q21981507 Q21981504 Q21981505 Q21981502 Q21157260 Q21113340 Q21110429 Q21433488 Q21989077 Q21495391 Q21496248 Q21986613 Q21494065 Q21494641 Q21115138 Q21115136 Q21106265 Q21991790 Q21126511 Q21105471 Q21982734 Q21121470 Q21201413 Q14876092 Q21988989 Q21111483 Q21172873 Q21980285 Q27551290 Q21130580 Q27547901 Q21112484 Q21114053 Q21106724 Q21115183 Q21499285 Q21991576 Q21990088 Q5205645 Q21173700 Q21111820 Q21985381 Q21985388 Q21990246 Q21100273 Q21159785 Q21121316 Q21134819 Q21991753
AND((c(Q181394),P681,Q899827), (c(Q181394),P681,Q79899))
action filter_type
action intersection
action find_reverse
entity Q899827
relation P681
action find_reverse
entity Q79899
relation P681
type Q181394
[ANSWERS] have endomembrane system and cytoplasm as their cell component
{'AND': [[{'concept': 'Q181394'}, 'P681', 'Q899827'], [{'concept': 'Q181394'}, 'P681', 'Q79899']]}
SELECT DISTINCT ?l WHERE { ?l property:P681 resource:Q899827 . ?l property:P681 resource:Q79899 . ?l rdf:type ontology:Q181394 }
Protein phosphatase 1 regulatory subunit 14C Na(+)/H(+) exchange regulatory cofactor NHE-RF1 Protein FAN CDK5 regulatory subunit-associated protein 3 Guanine nucleotide exchange factor DBS E3 ubiquitin-protein ligase TRIM23 Microtubule-associated proteins 1A/1B light chain 3B Microtubule-associated proteins 1A/1B light chain 3A Codanin-1 GTP-binding protein Rheb Apoptosis facilitator Bcl-2-like protein 14 Tether containing UBX domain for GLUT4 E3 ubiquitin-protein ligase RNF167 Na(+)/H(+) exchange regulatory cofactor NHE-RF2 Solute carrier family 2, facilitated glucose transporter member 4 Tyrosine-protein kinase JAK1 Leukocyte-specific transcript 1 protein Tether containing UBX domain for GLUT4 Dynamin-1-like protein GTPase RhebL1 Tyrosine-protein kinase JAK2 syntaxin YMR183C Solute carrier family 2, facilitated glucose transporter member 12 Synaptosomal-associated protein 47 Vacuolar fusion protein MON1 homolog B Protein RUFY3 Bph1p YCR032W Nuclear receptor-binding protein Disintegrin and metalloproteinase domain-containing protein 10 Charged multivesicular body protein 1a TBC1 domain family member 25 Dynamin-1-like protein ESCRT-III subunit protein VPS24 YKL041W Dedicator of cytokinesis protein 2 Huntingtin-interacting protein 1 Solute carrier family 2, facilitated glucose transporter member 10 Gamma-aminobutyric acid receptor-associated protein MAGUK p55 subfamily member 5 Rav1p YJR033C Partitioning defective 3 homolog Tyrosine-protein kinase JAK2 E3 ubiquitin-protein ligase RNF128 Glycerophosphodiester phosphodiesterase domain-containing protein 5 Ecotropic viral integration site 5 protein homolog Membrane-associated phosphatidylinositol transfer protein 2 Calcineurin B homologous protein 1 Tyrosine-protein kinase JAK1 Membrane-spanning 4-domains subfamily A member 3 TBC1 domain family member 25 Tyrosine-protein kinase JAK3 Nuclear receptor-binding protein Huntingtin-interacting protein 1-related protein Ras-related C3 botulinum toxin substrate 3 Serine/threonine-protein kinase mTOR Phosphatidylinositol 4-kinase beta E3 ubiquitin-protein ligase RNF128 Calcium/calmodulin-dependent protein kinase type 1G Tyrosine-protein kinase JAK3 Partitioning defective 3 homolog E3 ubiquitin-protein ligase TRIM23 ADP-ribosylation factor-like protein 6-interacting protein 1 Nuclear receptor-binding protein 2 TBC1 domain family member 21 Type-1A angiotensin II receptor ADP-ribosylation factor 1 Calcineurin B homologous protein 1 Dedicator of cytokinesis protein 2 E3 ubiquitin-protein ligase RNF34 Synaptosomal-associated protein 47 Gamma-aminobutyric acid receptor-associated protein TBC1 domain family member 4 GTP-binding protein Rheb TBC1 domain family member 10B Spectrin beta chain, non-erythrocytic 1 Vacuolar fusion protein MON1 homolog B V-type proton ATPase subunit B, kidney isoform Microtubule-associated proteins 1A/1B light chain 3 beta 2 TBC1 domain family member 2A Fatty-acid amide hydrolase 1 Small G protein signaling modulator 3 Small G protein signaling modulator 1 Huntingtin-interacting protein 1-related protein MAGUK p55 subfamily member 5 Phosphatidylinositol 4-phosphate 5-kinase type-1 gamma Small G protein signaling modulator 1 TBC1 domain family member 4 E3 ubiquitin-protein ligase RNF34 Dematin Rtn2p YDL204W Solute carrier family 2, facilitated glucose transporter member 4 Protein RUFY3 Natural resistance-associated macrophage protein 2 Cdc42 effector protein 1 Cdc42 effector protein 2 Cdc42 effector protein 5 Cdc42 effector protein 5 Cdc42 effector protein 4 Cdc42 effector protein 4 Cdc42 effector protein 1 Cdc42 effector protein 3 Cdc42 effector protein 2 Dematin Rab GTPase-activating protein 1 Protein MAL2 Ecotropic viral integration site 5 protein E3 ubiquitin-protein ligase RNF167 ADP-ribosylation factor-like protein 6-interacting protein 1 Na(+)/H(+) exchange regulatory cofactor NHE-RF1 Nuclear receptor-binding protein 2 Codanin-1 Calcium/calmodulin-dependent protein kinase type 1G Microtubule-associated proteins 1A/1B light chain 3B Microtubule-associated proteins 1A/1B light chain 3C Solute carrier family 2, facilitated glucose transporter member 10 TBC1 domain family member 10B TBC1 domain family member 2A Cdc42 effector protein 3 Phosphatidylinositol 4-phosphate 5-kinase type-1 gamma V-type proton ATPase subunit B, brain isoform ADP-ribosylation factor 1 Serine/threonine-protein kinase mTOR Rab GTPase-activating protein 1 Huntingtin-interacting protein 1 Fibroblast growth factor receptor substrate 2 V-type proton ATPase subunit B, brain isoform Did2p YKR035W-A Charged multivesicular body protein 1a Rho family GTPase RHO5 YNL180C Phosphatidylinositol 4-kinase beta Signal-induced proliferation-associated protein 1 Microtubule-associated proteins 1A/1B light chain 3A GTPase RhebL1 CDK5 regulatory subunit-associated protein 3 WD repeat and FYVE domain-containing protein 3 Long-chain fatty acid transport protein 1 Natural resistance-associated macrophage protein 2 Neurobeachin TBC1 domain family member 15 Ras-related C3 botulinum toxin substrate 3 Glycerophosphodiester phosphodiesterase domain-containing protein 5 TBC1 domain family member 15 Bcl-2-like protein 11 Small G protein signaling modulator 3 Long-chain fatty acid transport protein 1 Small G protein signaling modulator 2 Syntaxin-17
Guanine nucleotide exchange factor DBS, ADP-ribosylation factor 1, Huntingtin-interacting protein 1-related protein, Microtubule-associated proteins 1A/1B light chain 3A, Solute carrier family 2, facilitated glucose transporter member 12, Ras-related C3 botulinum toxin substrate 3, E3 ubiquitin-protein ligase RNF167, Phosphatidylinositol 4-kinase beta, Dematin and Tyrosine-protein kinase JAK1 have endomembrane system and cytoplasm as their cell component
Guanine nucleotide exchange factor DBS ADP-ribosylation factor 1 Huntingtin-interacting protein 1-related protein Microtubule-associated proteins 1A/1B light chain 3A Solute carrier family 2, facilitated glucose transporter member 12 Ras-related C3 botulinum toxin substrate 3 E3 ubiquitin-protein ligase RNF167 Phosphatidylinositol 4-kinase beta Dematin Tyrosine-protein kinase JAK1
action filter_type
action intersection
action find_reverse
entity endomembrane system
relation cell component
action find_reverse
entity cytoplasm
relation cell component
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'cell component', 'endomembrane system'], [{'concept': 'nutrient'}, 'cell component', 'cytoplasm']]}
SELECT DISTINCT ?l WHERE { ?l property:cell_component resource:endomembrane_system . ?l property:cell_component resource:cytoplasm . ?l rdf:type ontology:nutrient }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q8386 Q79529 Q181394
USER
How many nutrients contact around 75 drugs and chemical substances ?
(c(Q181394),P129,c(Q8386)|c(Q79529))
action count
action approx
action union
action find_tuple_counts
relation P129
type Q181394
type Q8386
action find_tuple_counts
relation P129
type Q181394
type Q79529
value 75
[{'concept': 'Q181394'}, 'P129', [{'concept': 'Q8386'}, {'concept': 'Q79529'}]]
SELECT DISTINCT ( COUNT ( ?v ) AS ?n ) WHERE { { SELECT DISTINCT ( COUNT ( ?j ) AS ?t ) ?v WHERE { { ?v property:P129 ?j . ?v rdf:type ontology:Q181394 . ?j rdf:type ontology:Q8386 } UNION { ?v rdf:type ontology:Q181394 . ?j rdf:type ontology:Q79529 . ?v property:P129 ?j } } GROUP BY ?v } . FILTER ( ?t = 75 ) }
action count
action approx
action union
action find_tuple_counts
relation physically interacts with
type nutrient
type drug
action find_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
value 75
[{'concept': 'nutrient'}, 'physically interacts with', [{'concept': 'drug'}, {'concept': 'chemical substance'}]]
SELECT DISTINCT ( COUNT ( ?v ) AS ?n ) WHERE { { SELECT DISTINCT ( COUNT ( ?j ) AS ?t ) ?v WHERE { { ?v property:physically_interacts_with ?j . ?v rdf:type ontology:nutrient . ?j rdf:type ontology:drug } UNION { ?v rdf:type ontology:nutrient . ?j rdf:type ontology:chemical_substance . ?v property:physically_interacts_with ?j } } GROUP BY ?v } . FILTER ( ?t = 75 ) }
[]
drug chemical substance nutrient
SYSTEM
2
Q4639596 Q21108118
(c(Q181394),P129,c(Q8386)|c(Q79529))
action count
action approx
action union
action find_tuple_counts
relation P129
type Q181394
type Q8386
action find_tuple_counts
relation P129
type Q181394
type Q79529
value 75
[ANSWER]
[{'concept': 'Q181394'}, 'P129', [{'concept': 'Q8386'}, {'concept': 'Q79529'}]]
SELECT DISTINCT ( COUNT ( ?v ) AS ?n ) WHERE { { SELECT DISTINCT ( COUNT ( ?j ) AS ?t ) ?v WHERE { { ?v property:P129 ?j . ?v rdf:type ontology:Q181394 . ?j rdf:type ontology:Q8386 } UNION { ?v rdf:type ontology:Q181394 . ?j rdf:type ontology:Q79529 . ?v property:P129 ?j } } GROUP BY ?v } . FILTER ( ?t = 75 ) }
5-hydroxytryptamine receptor 2B 5-hydroxytryptamine receptor 2C
2
action count
action approx
action union
action find_tuple_counts
relation physically interacts with
type nutrient
type drug
action find_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
value 75
[{'concept': 'nutrient'}, 'physically interacts with', [{'concept': 'drug'}, {'concept': 'chemical substance'}]]
SELECT DISTINCT ( COUNT ( ?v ) AS ?n ) WHERE { { SELECT DISTINCT ( COUNT ( ?j ) AS ?t ) ?v WHERE { { ?v property:physically_interacts_with ?j . ?v rdf:type ontology:nutrient . ?j rdf:type ontology:drug } UNION { ?v rdf:type ontology:nutrient . ?j rdf:type ontology:chemical_substance . ?v property:physically_interacts_with ?j } } GROUP BY ?v } . FILTER ( ?t = 75 ) }
[]