Simple Question (Direct)
Simple Question
Q21097347
P680
Q44424
USER
What represents the molecular function of EH domain-containing protein 1 ?
(Q21097347,P680,c(Q44424))
action filter_type
action find
entity Q21097347
relation P680
type Q44424
['Q21097347', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?a WHERE { resource:Q21097347 property:P680 ?a . ?a rdf:type ontology:Q44424 }
EH domain-containing protein 1
action filter_type
action find
entity EH domain-containing protein 1
relation molecular function
type chemical bond
['EH domain-containing protein 1', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?a WHERE { resource:EH_domain-containing_protein_1 property:molecular_function ?a . ?a rdf:type ontology:chemical_bond }
[]
chemical bond
Q13667380 Q14633862
SYSTEM
metal ion binding, calcium ion binding
Q13667380 Q14633862
(Q21097347,P680,c(Q44424))
action filter_type
action find
entity Q21097347
relation P680
type Q44424
The [ANSWERS] represent the molecular function of EH domain-containing protein 1
['Q21097347', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?a WHERE { resource:Q21097347 property:P680 ?a . ?a rdf:type ontology:Q44424 }
metal ion binding calcium ion binding
The metal ion binding and calcium ion binding represent the molecular function of EH domain-containing protein 1
metal ion binding calcium ion binding
action filter_type
action find
entity EH domain-containing protein 1
relation molecular function
type chemical bond
['EH domain-containing protein 1', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?a WHERE { resource:EH_domain-containing_protein_1 property:molecular_function ?a . ?a rdf:type ontology:chemical_bond }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21097347
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(c(Q863908),P688,Q13667380) (c(Q863908),P688,Q14633862)
action filter_type
action find_reverse
entity Q21097347
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q13667380'] [{'concept': 'Q863908'}, 'P688', 'Q14633862']
SELECT DISTINCT ?w WHERE { ?w property:P688 resource:Q21097347 . ?w rdf:type ontology:Q863908 }
EH domain-containing protein 1
action filter_type
action find_reverse
entity EH domain-containing protein 1
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'metal ion binding'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'calcium ion binding']
SELECT DISTINCT ?w WHERE { ?w property:encodes resource:EH_domain-containing_protein_1 . ?w rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18035963
SYSTEM
EHD1
Q18035963
(c(Q863908),P688,Q13667380) (c(Q863908),P688,Q14633862)
action filter_type
action find_reverse
entity Q21097347
relation P688
type Q863908
[ANSWER] encodes that nutrient
[{'concept': 'Q863908'}, 'P688', 'Q13667380'] [{'concept': 'Q863908'}, 'P688', 'Q14633862']
SELECT DISTINCT ?w WHERE { ?w property:P688 resource:Q21097347 . ?w rdf:type ontology:Q863908 }
EHD1
EHD1 encodes that nutrient
EHD1
action filter_type
action find_reverse
entity EH domain-containing protein 1
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'metal ion binding'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'calcium ion binding']
SELECT DISTINCT ?w WHERE { ?w property:encodes resource:EH_domain-containing_protein_1 . ?w rdf:type ontology:nucleic_acid_sequence }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q21142876 Q21097347
P702
Q863908
USER
Which nucleic acid sequences genes encode EH domain-containing protein 1 or Galactocerebrosidase ?
OR((Q21097347,P702,c(Q863908)), (Q21142876,P702,c(Q863908)))
action filter_type
action union
action find
entity Q21097347
relation P702
action find
entity Q21142876
relation P702
type Q863908
{'OR': [['Q21097347', 'P702', {'concept': 'Q863908'}], ['Q21142876', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?r WHERE { { ?q property:P702 ?r . VALUES ( ?q ) { ( resource:Q21097347 ) ( resource:Q21142876 ) } } . ?r rdf:type ontology:Q863908 }
Galactocerebrosidase EH domain-containing protein 1
action filter_type
action union
action find
entity EH domain-containing protein 1
relation encoded by
action find
entity Galactocerebrosidase
relation encoded by
type nucleic acid sequence
{'OR': [['EH domain-containing protein 1', 'encoded by', {'concept': 'nucleic acid sequence'}], ['Galactocerebrosidase', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?r WHERE { { ?q property:encoded_by ?r . VALUES ( ?q ) { ( resource:EH_domain-containing_protein_1 ) ( resource:Galactocerebrosidase ) } } . ?r rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18035963 Q14905422
SYSTEM
EHD1, GALC
Q18035963 Q14905422
OR((Q21097347,P702,c(Q863908)), (Q21142876,P702,c(Q863908)))
action filter_type
action union
action find
entity Q21097347
relation P702
action find
entity Q21142876
relation P702
type Q863908
[ANSWERS] encode EH domain-containing protein 1 or Galactocerebrosidase
{'OR': [['Q21097347', 'P702', {'concept': 'Q863908'}], ['Q21142876', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?r WHERE { { ?q property:P702 ?r . VALUES ( ?q ) { ( resource:Q21097347 ) ( resource:Q21142876 ) } } . ?r rdf:type ontology:Q863908 }
EHD1 GALC
EHD1 and GALC encode EH domain-containing protein 1 or Galactocerebrosidase
EHD1 GALC
action filter_type
action union
action find
entity EH domain-containing protein 1
relation encoded by
action find
entity Galactocerebrosidase
relation encoded by
type nucleic acid sequence
{'OR': [['EH domain-containing protein 1', 'encoded by', {'concept': 'nucleic acid sequence'}], ['Galactocerebrosidase', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?r WHERE { { ?q property:encoded_by ?r . VALUES ( ?q ) { ( resource:EH_domain-containing_protein_1 ) ( resource:Galactocerebrosidase ) } } . ?r rdf:type ontology:nucleic_acid_sequence }
[]
Clarification
Quantitative|Count|Single entity type|Indirect
P702
Q181394
USER
How many nutrients are encoded by that nucleic acid sequence ?
(c(Q181394),P702,Q14905422)
[{'concept': 'Q181394'}, 'P702', 'Q14905422']
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { ?z property:P702 resource:Q14905422 . ?z rdf:type ontology:Q181394 }
[{'concept': 'nutrient'}, 'encoded by', 'GALC']
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { ?z property:encoded_by resource:GALC . ?z rdf:type ontology:nutrient }
[]
nutrient
Quantitative|Count|Single entity type|Clarification
Q14905422
SYSTEM
Did you mean GALC ?
(c(Q181394),P702,Q18035963) (c(Q181394),P702,Q14905422)
[ANSWER]
[{'concept': 'Q181394'}, 'P702', 'Q18035963'] [{'concept': 'Q181394'}, 'P702', 'Q14905422']
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { ?z property:P702 resource:Q14905422 . ?z rdf:type ontology:Q181394 }
Did you mean GALC ?
GALC
[{'concept': 'nutrient'}, 'encoded by', 'EHD1'] [{'concept': 'nutrient'}, 'encoded by', 'GALC']
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { ?z property:encoded_by resource:GALC . ?z rdf:type ontology:nutrient }
[]
Quantitative Reasoning (Count) (All)
USER
Yes
(c(Q181394),P702,Q14905422)
[{'concept': 'Q181394'}, 'P702', 'Q14905422']
[{'concept': 'nutrient'}, 'encoded by', 'GALC']
[]
SYSTEM
2
Q21142876 Q421491
(c(Q181394),P702,Q14905422)
[ANSWER]
[{'concept': 'Q181394'}, 'P702', 'Q14905422']
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { ?z property:P702 resource:Q14905422 . ?z rdf:type ontology:Q181394 }
Galactocerebrosidase Galactocerebrosidase
2
[{'concept': 'nutrient'}, 'encoded by', 'GALC']
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { ?z property:encoded_by resource:GALC . ?z rdf:type ontology:nutrient }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q24146747 Q21097347
P702
Q863908
USER
Which nucleic acid sequences genes encode EH domain-containing protein 1 or 23S rRNA (cytosine(1962)-C(5))-methyltransferase    ECUMN_1157 ?
OR((Q21097347,P702,c(Q863908)), (Q24146747,P702,c(Q863908)))
action filter_type
action union
action find
entity Q21097347
relation P702
action find
entity Q24146747
relation P702
type Q863908
{'OR': [['Q21097347', 'P702', {'concept': 'Q863908'}], ['Q24146747', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?v WHERE { ?v rdf:type ontology:Q863908 . { { resource:Q21097347 property:P702 ?v } UNION { resource:Q24146747 property:P702 ?v } } }
23S rRNA (cytosine(1962)-C(5))-methyltransferase    ECUMN_1157 EH domain-containing protein 1
action filter_type
action union
action find
entity EH domain-containing protein 1
relation encoded by
action find
entity 23S rRNA (cytosine(1962)-C(5))-methyltransferase    ECUMN_1157
relation encoded by
type nucleic acid sequence
{'OR': [['EH domain-containing protein 1', 'encoded by', {'concept': 'nucleic acid sequence'}], ['23S rRNA (cytosine(1962)-C(5))-methyltransferase    ECUMN_1157', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?v WHERE { ?v rdf:type ontology:nucleic_acid_sequence . { { resource:EH_domain-containing_protein_1 property:encoded_by ?v } UNION { resource:23S_rRNA_(cytosine(1962)-C(5))-methyltransferase____ECUMN_1157 property:encoded_by ?v } } }
[]
nucleic acid sequence
Q23140930 Q18035963
SYSTEM
23S rRNA (cytosine(1962)-C(5))-methyltransferase    ECUMN_1157, EHD1
Q23140930 Q18035963
OR((Q21097347,P702,c(Q863908)), (Q24146747,P702,c(Q863908)))
action filter_type
action union
action find
entity Q21097347
relation P702
action find
entity Q24146747
relation P702
type Q863908
[ANSWERS]
{'OR': [['Q21097347', 'P702', {'concept': 'Q863908'}], ['Q24146747', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?v WHERE { ?v rdf:type ontology:Q863908 . { { resource:Q21097347 property:P702 ?v } UNION { resource:Q24146747 property:P702 ?v } } }
23S rRNA (cytosine(1962)-C(5))-methyltransferase    ECUMN_1157 EHD1
23S rRNA (cytosine(1962)-C(5))-methyltransferase ECUMN 1157 and EHD1 encode EH domain-containing protein 1 or 23S rRNA (cytosine(1962)-C(5))-methyltransferase ECUMN_1157
23S rRNA (cytosine(1962)-C(5))-methyltransferase    ECUMN_1157 EHD1
action filter_type
action union
action find
entity EH domain-containing protein 1
relation encoded by
action find
entity 23S rRNA (cytosine(1962)-C(5))-methyltransferase    ECUMN_1157
relation encoded by
type nucleic acid sequence
{'OR': [['EH domain-containing protein 1', 'encoded by', {'concept': 'nucleic acid sequence'}], ['23S rRNA (cytosine(1962)-C(5))-methyltransferase    ECUMN_1157', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?v WHERE { ?v rdf:type ontology:nucleic_acid_sequence . { { resource:EH_domain-containing_protein_1 property:encoded_by ?v } UNION { resource:23S_rRNA_(cytosine(1962)-C(5))-methyltransferase____ECUMN_1157 property:encoded_by ?v } } }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23511486 Q24146747
P688
Q863908
USER
Which nucleic acid sequences encode 23S rRNA (cytosine(1962)-C(5))-methyltransferase    ECUMN_1157 or hypothetical protein    BC2958 ?
OR((c(Q863908),P688,Q24146747), (c(Q863908),P688,Q23511486))
action filter_type
action union
action find_reverse
entity Q24146747
relation P688
action find_reverse
entity Q23511486
relation P688
type Q863908
{'OR': [[{'concept': 'Q863908'}, 'P688', 'Q24146747'], [{'concept': 'Q863908'}, 'P688', 'Q23511486']]}
SELECT DISTINCT ?s WHERE { { { ?s property:P688 resource:Q24146747 } UNION { ?s property:P688 resource:Q23511486 } } . ?s rdf:type ontology:Q863908 }
hypothetical protein    BC2958 23S rRNA (cytosine(1962)-C(5))-methyltransferase    ECUMN_1157
action filter_type
action union
action find_reverse
entity 23S rRNA (cytosine(1962)-C(5))-methyltransferase    ECUMN_1157
relation encodes
action find_reverse
entity hypothetical protein    BC2958
relation encodes
type nucleic acid sequence
{'OR': [[{'concept': 'nucleic acid sequence'}, 'encodes', '23S rRNA (cytosine(1962)-C(5))-methyltransferase    ECUMN_1157'], [{'concept': 'nucleic acid sequence'}, 'encodes', 'hypothetical protein    BC2958']]}
SELECT DISTINCT ?s WHERE { { { ?s property:encodes resource:23S_rRNA_(cytosine(1962)-C(5))-methyltransferase____ECUMN_1157 } UNION { ?s property:encodes resource:hypothetical_protein____BC2958 } } . ?s rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23140930 Q23193054
SYSTEM
23S rRNA (cytosine(1962)-C(5))-methyltransferase    ECUMN_1157, hypothetical protein    BC2958
Q23140930 Q23193054
OR((c(Q863908),P688,Q24146747), (c(Q863908),P688,Q23511486))
action filter_type
action union
action find_reverse
entity Q24146747
relation P688
action find_reverse
entity Q23511486
relation P688
type Q863908
[ANSWERS]
{'OR': [[{'concept': 'Q863908'}, 'P688', 'Q24146747'], [{'concept': 'Q863908'}, 'P688', 'Q23511486']]}
SELECT DISTINCT ?s WHERE { { { ?s property:P688 resource:Q24146747 } UNION { ?s property:P688 resource:Q23511486 } } . ?s rdf:type ontology:Q863908 }
23S rRNA (cytosine(1962)-C(5))-methyltransferase    ECUMN_1157 hypothetical protein    BC2958
23S rRNA (cytosine(1962)-C(5))-methyltransferase ECUMN 1157 and hypothetical protein BC2958 encode 23S rRNA (cytosine(1962)-C(5))-methyltransferase ECUMN_1157 or hypothetical protein BC2958
23S rRNA (cytosine(1962)-C(5))-methyltransferase    ECUMN_1157 hypothetical protein    BC2958
action filter_type
action union
action find_reverse
entity 23S rRNA (cytosine(1962)-C(5))-methyltransferase    ECUMN_1157
relation encodes
action find_reverse
entity hypothetical protein    BC2958
relation encodes
type nucleic acid sequence
{'OR': [[{'concept': 'nucleic acid sequence'}, 'encodes', '23S rRNA (cytosine(1962)-C(5))-methyltransferase    ECUMN_1157'], [{'concept': 'nucleic acid sequence'}, 'encodes', 'hypothetical protein    BC2958']]}
SELECT DISTINCT ?s WHERE { { { ?s property:encodes resource:23S_rRNA_(cytosine(1962)-C(5))-methyltransferase____ECUMN_1157 } UNION { ?s property:encodes resource:hypothetical_protein____BC2958 } } . ?s rdf:type ontology:nucleic_acid_sequence }
[]
Clarification
Simple Question|Single Entity|Indirect
Q23193054
P703
Q631147
USER
Which taxon does that nucleic acid sequence belong to ?
(Q23193054,P703,c(Q631147))
action filter_type
action find
entity Q23193054
relation P703
type Q631147
['Q23193054', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?d WHERE { resource:Q23193054 property:P703 ?d . ?d rdf:type ontology:Q631147 }
hypothetical protein    BC2958
action filter_type
action find
entity hypothetical protein    BC2958
relation found in taxon
type infraspecific name
['hypothetical protein    BC2958', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?d WHERE { resource:hypothetical_protein____BC2958 property:found_in_taxon ?d . ?d rdf:type ontology:infraspecific_name }
[]
infraspecific name
Clarification for simple ques.
Q23193054
SYSTEM
Did you mean hypothetical protein    BC2958 ?
Q23140930 Q23193054
(Q23140930,P703,c(Q631147)) (Q23193054,P703,c(Q631147))
[ANSWER]
['Q23140930', 'P703', {'concept': 'Q631147'}] ['Q23193054', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?d WHERE { resource:Q23193054 property:P703 ?d . ?d rdf:type ontology:Q631147 }
23S rRNA (cytosine(1962)-C(5))-methyltransferase    ECUMN_1157 hypothetical protein    BC2958
Did you mean hypothetical protein    BC2958 ?
hypothetical protein    BC2958
['23S rRNA (cytosine(1962)-C(5))-methyltransferase    ECUMN_1157', 'found in taxon', {'concept': 'infraspecific name'}] ['hypothetical protein    BC2958', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?d WHERE { resource:hypothetical_protein____BC2958 property:found_in_taxon ?d . ?d rdf:type ontology:infraspecific_name }
[]
Simple Question (Coreferenced)
USER
Yes
(Q23193054,P703,c(Q631147))
['Q23193054', 'P703', {'concept': 'Q631147'}]
['hypothetical protein    BC2958', 'found in taxon', {'concept': 'infraspecific name'}]
[]
Q21102970
SYSTEM
Bacillus cereus ATCC 14579
Q21102970
(Q23193054,P703,c(Q631147))
action filter_type
action find
entity Q23193054
relation P703
type Q631147
That nucleic acid sequence belongs to [ANSWER]
['Q23193054', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?d WHERE { resource:Q23193054 property:P703 ?d . ?d rdf:type ontology:Q631147 }
Bacillus cereus ATCC 14579
That nucleic acid sequence belongs to Bacillus cereus ATCC 14579
Bacillus cereus ATCC 14579
action filter_type
action find
entity hypothetical protein    BC2958
relation found in taxon
type infraspecific name
['hypothetical protein    BC2958', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?d WHERE { resource:hypothetical_protein____BC2958 property:found_in_taxon ?d . ?d rdf:type ontology:infraspecific_name }
[]