Simple Question (Direct)
Simple Question
Q21108624
P129
Q8386
USER
What do Platelet-derived growth factor receptor beta interact with ?
(Q21108624,P129,c(Q8386))
action filter_type
action find
entity Q21108624
relation P129
type Q8386
['Q21108624', 'P129', {'concept': 'Q8386'}]
SELECT DISTINCT ?o WHERE { resource:Q21108624 property:P129 ?o . ?o rdf:type ontology:Q8386 }
Platelet-derived growth factor receptor beta
action filter_type
action find
entity Platelet-derived growth factor receptor beta
relation physically interacts with
type drug
['Platelet-derived growth factor receptor beta', 'physically interacts with', {'concept': 'drug'}]
SELECT DISTINCT ?o WHERE { resource:Platelet-derived_growth_factor_receptor_beta property:physically_interacts_with ?o . ?o rdf:type ontology:drug }
[]
drug
Q7157043 Q15149723 Q417542
SYSTEM
pazopanib, nintedanib, sunitinib
Q7157043 Q15149723 Q417542
(Q21108624,P129,c(Q8386))
action filter_type
action find
entity Q21108624
relation P129
type Q8386
Platelet-derived growth factor receptor beta interact with [ANSWERS]
['Q21108624', 'P129', {'concept': 'Q8386'}]
SELECT DISTINCT ?o WHERE { resource:Q21108624 property:P129 ?o . ?o rdf:type ontology:Q8386 }
pazopanib nintedanib sunitinib
Platelet-derived growth factor receptor beta interact with pazopanib, nintedanib and sunitinib
pazopanib nintedanib sunitinib
action filter_type
action find
entity Platelet-derived growth factor receptor beta
relation physically interacts with
type drug
['Platelet-derived growth factor receptor beta', 'physically interacts with', {'concept': 'drug'}]
SELECT DISTINCT ?o WHERE { resource:Platelet-derived_growth_factor_receptor_beta property:physically_interacts_with ?o . ?o rdf:type ontology:drug }
[]
Simple Question (Coreferenced)
Simple Question|Mult. Entity
Q7157043 Q15149723 Q417542
P129
Q181394
USER
Which nutrients communicates with those drugs ?
(c(Q181394),P129,Q7157043) (c(Q181394),P129,Q15149723) (c(Q181394),P129,Q417542)
action filter_type
action find
entity prev_answer
relation P129
type Q181394
[{'concept': 'Q181394'}, 'P129', 'Q7157043'] [{'concept': 'Q181394'}, 'P129', 'Q15149723'] [{'concept': 'Q181394'}, 'P129', 'Q417542']
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:Q181394 . VALUES ( ?f ) { ( resource:Q7157043 ) ( resource:Q15149723 ) ( resource:Q417542 ) } . ?f property:P129 ?j }
pazopanib nintedanib sunitinib
action filter_type
action find
entity prev_answer
relation physically interacts with
type nutrient
[{'concept': 'nutrient'}, 'physically interacts with', 'pazopanib'] [{'concept': 'nutrient'}, 'physically interacts with', 'nintedanib'] [{'concept': 'nutrient'}, 'physically interacts with', 'sunitinib']
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:nutrient . VALUES ( ?f ) { ( resource:pazopanib ) ( resource:nintedanib ) ( resource:sunitinib ) } . ?f property:physically_interacts_with ?j }
[]
nutrient
Q5446456 Q909409 Q909409
SYSTEM
Fibroblast growth factor receptor 2 for 1st, Mast/stem cell growth factor receptor Kit for 2nd, 3rd
Q21172390 Q21115605 Q21118353 Q909409 Q21108624 Q21100975 Q5446453 Q5446457 Q5446456 Q21172390 Q21115605 Q21102511 Q21118353 Q21108624 Q5446453 Q21137668 Q415976 Q5009781 Q21172390 Q21118353 Q909409 Q21108624 Q5446453
(c(Q181394),P129,Q7157043) (c(Q181394),P129,Q15149723) (c(Q181394),P129,Q417542)
action filter_type
action find
entity prev_answer
relation P129
type Q181394
[ANSWERS]
[{'concept': 'Q181394'}, 'P129', 'Q7157043'] [{'concept': 'Q181394'}, 'P129', 'Q15149723'] [{'concept': 'Q181394'}, 'P129', 'Q417542']
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:Q181394 . VALUES ( ?f ) { ( resource:Q7157043 ) ( resource:Q15149723 ) ( resource:Q417542 ) } . ?f property:P129 ?j }
Vascular endothelial growth factor receptor 2 Vascular endothelial growth factor receptor 1 Vascular endothelial growth factor receptor 3 Mast/stem cell growth factor receptor Kit Platelet-derived growth factor receptor beta Macrophage colony-stimulating factor 1 receptor Fibroblast growth factor receptor 1 Fibroblast growth factor receptor 3 Fibroblast growth factor receptor 2 Vascular endothelial growth factor receptor 2 Vascular endothelial growth factor receptor 1 Platelet-derived growth factor receptor alpha Vascular endothelial growth factor receptor 3 Platelet-derived growth factor receptor beta Fibroblast growth factor receptor 1 Fibroblast growth factor receptor 4 Proto-oncogene tyrosine-protein kinase receptor Ret Receptor-type tyrosine-protein kinase FLT3 Vascular endothelial growth factor receptor 2 Vascular endothelial growth factor receptor 3 Mast/stem cell growth factor receptor Kit Platelet-derived growth factor receptor beta Fibroblast growth factor receptor 1
Fibroblast growth factor receptor 2, Mast/stem cell growth factor receptor Kit and Mast/stem cell growth factor receptor Kit communicate with those drugs
Fibroblast growth factor receptor 2 Mast/stem cell growth factor receptor Kit Mast/stem cell growth factor receptor Kit
action filter_type
action find
entity prev_answer
relation physically interacts with
type nutrient
[{'concept': 'nutrient'}, 'physically interacts with', 'pazopanib'] [{'concept': 'nutrient'}, 'physically interacts with', 'nintedanib'] [{'concept': 'nutrient'}, 'physically interacts with', 'sunitinib']
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:nutrient . VALUES ( ?f ) { ( resource:pazopanib ) ( resource:nintedanib ) ( resource:sunitinib ) } . ?f property:physically_interacts_with ?j }
[]
Clarification
Simple Question|Single Entity|Indirect
Q909409
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(c(Q863908),P688,Q909409)
action filter_type
action find_reverse
entity Q909409
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q909409']
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:Q863908 . ?x property:P688 resource:Q909409 }
Mast/stem cell growth factor receptor Kit
action filter_type
action find_reverse
entity Mast/stem cell growth factor receptor Kit
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Mast/stem cell growth factor receptor Kit']
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:nucleic_acid_sequence . ?x property:encodes resource:Mast/stem_cell_growth_factor_receptor_Kit }
[]
nucleic acid sequence
Clarification for simple ques.
Q5446456
SYSTEM
Did you mean Fibroblast growth factor receptor 2 ?
Q5446456 Q909409 Q909409
(c(Q863908),P688,Q5446456) (c(Q863908),P688,Q909409) (c(Q863908),P688,Q909409)
[ANSWER]
[{'concept': 'Q863908'}, 'P688', 'Q5446456'] [{'concept': 'Q863908'}, 'P688', 'Q909409'] [{'concept': 'Q863908'}, 'P688', 'Q909409']
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:Q863908 . ?x property:P688 resource:Q909409 }
Fibroblast growth factor receptor 2 Mast/stem cell growth factor receptor Kit Mast/stem cell growth factor receptor Kit
Did you mean Fibroblast growth factor receptor 2 ?
Fibroblast growth factor receptor 2
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Fibroblast growth factor receptor 2'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'Mast/stem cell growth factor receptor Kit'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'Mast/stem cell growth factor receptor Kit']
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:nucleic_acid_sequence . ?x property:encodes resource:Mast/stem_cell_growth_factor_receptor_Kit }
[]
Simple Question (Coreferenced)
USER
No, I meant Mast/stem cell growth factor receptor Kit. Could you tell me the answer for that?
(c(Q863908),P688,Q909409)
Q909409
[{'concept': 'Q863908'}, 'P688', 'Q909409']
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Mast/stem cell growth factor receptor Kit']
[]
Q20969938
SYSTEM
KIT
Q20969938
(c(Q863908),P688,Q909409)
action filter_type
action find_reverse
entity Q909409
relation P688
type Q863908
[ANSWER] encodes that nutrient
[{'concept': 'Q863908'}, 'P688', 'Q909409']
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:Q863908 . ?x property:P688 resource:Q909409 }
KIT
KIT encodes that nutrient
KIT
action filter_type
action find_reverse
entity Mast/stem cell growth factor receptor Kit
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Mast/stem cell growth factor receptor Kit']
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:nucleic_acid_sequence . ?x property:encodes resource:Mast/stem_cell_growth_factor_receptor_Kit }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q20969938 Q23081584
P684
Q863908
USER
Is keto acid formate lyase    ECL_04508 the name of the species that has that one as its orthologous gene ?
(Q23081584,P684,Q20969938)
action is_in
entity Q23081584
action find
entity Q20969938
relation P684
['Q23081584', 'P684', 'Q20969938']
ASK WHERE { resource:Q20969938 property:P684 resource:Q23081584 }
KIT keto acid formate lyase    ECL_04508
action is_in
entity keto acid formate lyase    ECL_04508
action find
entity KIT
relation ortholog
['keto acid formate lyase    ECL_04508', 'ortholog', 'KIT']
ASK WHERE { resource:KIT property:ortholog resource:keto_acid_formate_lyase____ECL_04508 }
[]
nucleic acid sequence
SYSTEM
NO
(Q23081584,P684,Q20969938)
action is_in
entity Q23081584
action find
entity Q20969938
relation P684
[ANSWER]
['Q23081584', 'P684', 'Q20969938']
ASK WHERE { resource:Q20969938 property:P684 resource:Q23081584 }
No
action is_in
entity keto acid formate lyase    ECL_04508
action find
entity KIT
relation ortholog
['keto acid formate lyase    ECL_04508', 'ortholog', 'KIT']
ASK WHERE { resource:KIT property:ortholog resource:keto_acid_formate_lyase____ECL_04508 }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q20969938
P688
Q181394
USER
Which nutrient is encoded by KIT ?
action filter_type
action find
entity Q20969938
relation P688
type Q181394
SELECT DISTINCT ?t WHERE { resource:Q20969938 property:P688 ?t . ?t rdf:type ontology:Q181394 }
KIT
action filter_type
action find
entity KIT
relation encodes
type nutrient
SELECT DISTINCT ?t WHERE { resource:KIT property:encodes ?t . ?t rdf:type ontology:nutrient }
[]
nutrient
Q909409
SYSTEM
Mast/stem cell growth factor receptor Kit
Q909409
action filter_type
action find
entity Q20969938
relation P688
type Q181394
[ANSWER] is encoded by KIT
SELECT DISTINCT ?t WHERE { resource:Q20969938 property:P688 ?t . ?t rdf:type ontology:Q181394 }
Mast/stem cell growth factor receptor Kit
Mast/stem cell growth factor receptor Kit is encoded by KIT
Mast/stem cell growth factor receptor Kit
action filter_type
action find
entity KIT
relation encodes
type nutrient
SELECT DISTINCT ?t WHERE { resource:KIT property:encodes ?t . ?t rdf:type ontology:nutrient }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q909409 Q7157043
P129
Q8386
USER
Does pazopanib contact that nutrient ?
(Q7157043,P129,Q909409)
action is_in
entity Q7157043
action find
entity Q909409
relation P129
['Q7157043', 'P129', 'Q909409']
ASK WHERE { resource:Q909409 property:P129 resource:Q7157043 }
Mast/stem cell growth factor receptor Kit pazopanib
action is_in
entity pazopanib
action find
entity Mast/stem cell growth factor receptor Kit
relation physically interacts with
['pazopanib', 'physically interacts with', 'Mast/stem cell growth factor receptor Kit']
ASK WHERE { resource:Mast/stem_cell_growth_factor_receptor_Kit property:physically_interacts_with resource:pazopanib }
[]
drug
SYSTEM
YES
(Q7157043,P129,Q909409)
action is_in
entity Q7157043
action find
entity Q909409
relation P129
[ANSWER]
['Q7157043', 'P129', 'Q909409']
ASK WHERE { resource:Q909409 property:P129 resource:Q7157043 }
Yes
action is_in
entity pazopanib
action find
entity Mast/stem cell growth factor receptor Kit
relation physically interacts with
['pazopanib', 'physically interacts with', 'Mast/stem cell growth factor receptor Kit']
ASK WHERE { resource:Mast/stem_cell_growth_factor_receptor_Kit property:physically_interacts_with resource:pazopanib }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q909409
P702
Q863908
USER
What is the gene that encodes that nutrient ?
action filter_type
action find
entity Q909409
relation P702
type Q863908
SELECT DISTINCT ?s WHERE { resource:Q909409 property:P702 ?s . ?s rdf:type ontology:Q863908 }
Mast/stem cell growth factor receptor Kit
action filter_type
action find
entity Mast/stem cell growth factor receptor Kit
relation encoded by
type nucleic acid sequence
SELECT DISTINCT ?s WHERE { resource:Mast/stem_cell_growth_factor_receptor_Kit property:encoded_by ?s . ?s rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q20969938
SYSTEM
KIT
Q20969938
action filter_type
action find
entity Q909409
relation P702
type Q863908
The gene that encodes that nutrient is a [ANSWER]
SELECT DISTINCT ?s WHERE { resource:Q909409 property:P702 ?s . ?s rdf:type ontology:Q863908 }
KIT
The gene that encodes that nutrient is a KIT
KIT
action filter_type
action find
entity Mast/stem cell growth factor receptor Kit
relation encoded by
type nucleic acid sequence
SELECT DISTINCT ?s WHERE { resource:Mast/stem_cell_growth_factor_receptor_Kit property:encoded_by ?s . ?s rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q909409
P680
Q44424
USER
Which chemical bond represents molecular function of that nutrient ?
(Q20969938,P680,c(Q44424))
action filter_type
action find
entity Q909409
relation P680
type Q44424
['Q20969938', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?n WHERE { resource:Q909409 property:P680 ?n . ?n rdf:type ontology:Q44424 }
Mast/stem cell growth factor receptor Kit
action filter_type
action find
entity Mast/stem cell growth factor receptor Kit
relation molecular function
type chemical bond
['KIT', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?n WHERE { resource:Mast/stem_cell_growth_factor_receptor_Kit property:molecular_function ?n . ?n rdf:type ontology:chemical_bond }
[]
chemical bond
Q13667380
SYSTEM
metal ion binding
Q13667380
(Q20969938,P680,c(Q44424))
action filter_type
action find
entity Q909409
relation P680
type Q44424
The [ANSWER] represents molecular function of that nutrient
['Q20969938', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?n WHERE { resource:Q909409 property:P680 ?n . ?n rdf:type ontology:Q44424 }
metal ion binding
The metal ion binding represents molecular function of that nutrient
metal ion binding
action filter_type
action find
entity Mast/stem cell growth factor receptor Kit
relation molecular function
type chemical bond
['KIT', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?n WHERE { resource:Mast/stem_cell_growth_factor_receptor_Kit property:molecular_function ?n . ?n rdf:type ontology:chemical_bond }
[]