Simple Question (Direct)
Simple Question
Q27745883
P703
Q631147
USER
Which taxon is F420-0--gamma-glutamyl ligase    MSMEG_1829 a part of ?
(Q27745883,P703,c(Q631147))
action filter_type
action find
entity Q27745883
relation P703
type Q631147
['Q27745883', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?b WHERE { resource:Q27745883 property:P703 ?b . ?b rdf:type ontology:Q631147 }
F420-0--gamma-glutamyl ligase    MSMEG_1829
action filter_type
action find
entity F420-0--gamma-glutamyl ligase    MSMEG_1829
relation found in taxon
type infraspecific name
['F420-0--gamma-glutamyl ligase    MSMEG_1829', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?b WHERE { resource:F420-0--gamma-glutamyl_ligase____MSMEG_1829 property:found_in_taxon ?b . ?b rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102986
SYSTEM
Mycobacterium smegmatis str. MC2 155
Q21102986
(Q27745883,P703,c(Q631147))
action filter_type
action find
entity Q27745883
relation P703
type Q631147
[ANSWER] is F420-0--gamma-glutamyl ligase MSMEG_1829 a part of
['Q27745883', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?b WHERE { resource:Q27745883 property:P703 ?b . ?b rdf:type ontology:Q631147 }
Mycobacterium smegmatis str. MC2 155
Mycobacterium smegmatis str. MC2 155 is F420-0--gamma-glutamyl ligase MSMEG_1829 a part of
Mycobacterium smegmatis str. MC2 155
action filter_type
action find
entity F420-0--gamma-glutamyl ligase    MSMEG_1829
relation found in taxon
type infraspecific name
['F420-0--gamma-glutamyl ligase    MSMEG_1829', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?b WHERE { resource:F420-0--gamma-glutamyl_ligase____MSMEG_1829 property:found_in_taxon ?b . ?b rdf:type ontology:infraspecific_name }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q27745883
P680
Q44424
USER
Which chemical bond represents molecular function of that nutrient ?
(Q21102986,P680,c(Q44424))
action filter_type
action find
entity Q27745883
relation P680
type Q44424
['Q21102986', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?z WHERE { resource:Q27745883 property:P680 ?z . ?z rdf:type ontology:Q44424 }
F420-0--gamma-glutamyl ligase    MSMEG_1829
action filter_type
action find
entity F420-0--gamma-glutamyl ligase    MSMEG_1829
relation molecular function
type chemical bond
['Mycobacterium smegmatis str. MC2 155', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?z WHERE { resource:F420-0--gamma-glutamyl_ligase____MSMEG_1829 property:molecular_function ?z . ?z rdf:type ontology:chemical_bond }
[]
chemical bond
Q13667380
SYSTEM
metal ion binding
Q13667380
(Q21102986,P680,c(Q44424))
action filter_type
action find
entity Q27745883
relation P680
type Q44424
The [ANSWER] represents molecular function of that nutrient
['Q21102986', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?z WHERE { resource:Q27745883 property:P680 ?z . ?z rdf:type ontology:Q44424 }
metal ion binding
The metal ion binding represents molecular function of that nutrient
metal ion binding
action filter_type
action find
entity F420-0--gamma-glutamyl ligase    MSMEG_1829
relation molecular function
type chemical bond
['Mycobacterium smegmatis str. MC2 155', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?z WHERE { resource:F420-0--gamma-glutamyl_ligase____MSMEG_1829 property:molecular_function ?z . ?z rdf:type ontology:chemical_bond }
[]
Quantitative Reasoning (All)
Quantitative|Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q181394 Q79529 Q181394
USER
Which nutrients do exactly 2 chemical substances and nutrients interact with ?
(c(Q79529)|c(Q181394),P129,c(Q181394))
action equal
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
value 2
[[{'concept': 'Q79529'}, {'concept': 'Q181394'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?c WHERE { { SELECT DISTINCT ( COUNT ( ?f ) AS ?t ) ?c WHERE { { ?f property:P129 ?c . ?c rdf:type ontology:Q181394 . ?f rdf:type ontology:Q79529 } UNION { ?c rdf:type ontology:Q181394 . ?f rdf:type ontology:Q181394 . ?f property:P129 ?c } } GROUP BY ?c } . FILTER ( ?t = 2 ) }
action equal
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
value 2
[[{'concept': 'chemical substance'}, {'concept': 'nutrient'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?c WHERE { { SELECT DISTINCT ( COUNT ( ?f ) AS ?t ) ?c WHERE { { ?f property:physically_interacts_with ?c . ?c rdf:type ontology:nutrient . ?f rdf:type ontology:chemical_substance } UNION { ?c rdf:type ontology:nutrient . ?f rdf:type ontology:nutrient . ?f property:physically_interacts_with ?c } } GROUP BY ?c } . FILTER ( ?t = 2 ) }
[]
nutrient chemical substance nutrient
Q21109354 Q587961 Q285613
SYSTEM
Proto-oncogene tyrosine-protein kinase Src, Tyrosine-protein kinase ABL1, Serine/threonine-protein kinase mTOR
Q22679043 Q5018799 Q21115219 Q21982207 Q2271947 Q7671480 Q905729 Q21111688 Q21119836 Q417057 Q6155969 Q21113312 Q2463389 Q15323688 Q21108789 Q420470 Q7317662 Q21100441 Q21114547 Q14865158 Q906403 Q21105011 Q21108402 Q21118967 Q21118678 Q7169504 Q21111689 Q14911929 Q21123723 Q5198256 Q21123236 Q21125231 Q21117805 Q21123244 Q21123725 Q410798 Q15327635 Q21987842 Q21173746 Q21120458 Q21110304 Q21114338 Q21987844 Q21119575 Q21132140 Q21105660 Q21991512 Q21981993 Q21494387 Q21120420 Q21112690 Q21120423 Q21125248 Q21124061 Q7799753 Q21108578 Q21106540 Q415364 Q21109354 Q409867 Q21108785 Q21123247 Q15323346 Q21105636 Q7117825 Q7117823 Q21497124 Q21497128 Q21122493 Q12746382 Q1085078 Q21121368 Q7118491 Q22676780 Q21120698 Q905000 Q21113274 Q21105176 Q2083074 Q21121716 Q6449561 Q7799751 Q21110532 Q21123722 Q408572 Q21982979 Q21123251 Q285613 Q587961 Q21118677 Q14905763 Q21496564 Q9020944 Q21112289 Q21113297 Q21157551 Q21121276 Q288431 Q21103162 Q21097216 Q21100360 Q6714402 Q21115429
(c(Q79529)|c(Q181394),P129,c(Q181394))
action equal
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
value 2
[ANSWERS]
[[{'concept': 'Q79529'}, {'concept': 'Q181394'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?c WHERE { { SELECT DISTINCT ( COUNT ( ?f ) AS ?t ) ?c WHERE { { ?f property:P129 ?c . ?c rdf:type ontology:Q181394 . ?f rdf:type ontology:Q79529 } UNION { ?c rdf:type ontology:Q181394 . ?f rdf:type ontology:Q181394 . ?f property:P129 ?c } } GROUP BY ?c } . FILTER ( ?t = 2 ) }
Aldose reductase Calcium-activated potassium channel subunit alpha-1 Oxysterols receptor LXR-beta Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 Sodium-dependent dopamine transporter Transient receptor potential cation channel subfamily M member 4 Prostaglandin D2 receptor B2 bradykinin receptor Small conductance calcium-activated potassium channel protein 1 Vitamin D3 receptor Tyrosine-protein kinase JAK3 Gamma-aminobutyric acid receptor subunit beta-3 Tyrosine-protein kinase Lyn Transient receptor potential cation channel subfamily V member 2 Potassium voltage-gated channel subfamily KQT member 5 Cystic fibrosis transmembrane conductance regulator Nuclear receptor subfamily 1 group D member 2 Bromodomain-containing protein 4 Nitric oxide synthase, inducible Potassium voltage-gated channel subfamily KQT member 1 Protein kinase C zeta type cGMP-dependent 3',5'-cyclic phosphodiesterase Chloride channel protein 2 G-protein coupled receptor 183 Melanocortin receptor 3 Peroxisome proliferator-activated receptor delta B1 bradykinin receptor Mu-type opioid receptor Pannexin-2 Cyclin-dependent kinase 9 Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform Solute carrier organic anion transporter family member 1A2 cAMP-specific 3',5'-cyclic phosphodiesterase 4A cGMP-inhibited 3',5'-cyclic phosphodiesterase B Pannexin-1 cGMP-specific 3',5'-cyclic phosphodiesterase Transient receptor potential cation channel subfamily M member 7 Prostaglandin E2 receptor EP3 subtype Melanocyte-stimulating hormone receptor Proteasome subunit beta type-5 Galanin receptor type 1 Excitatory amino acid transporter 2 Prostaglandin E2 receptor EP1 subtype P2Y purinoceptor 1 Aurora kinase C Cyclic nucleotide-gated cation channel alpha-3 Trace amine-associated receptor 5 fMet-Leu-Phe receptor Steroid hormone receptor ERR1 Prostaglandin E2 receptor EP1 subtype fMet-Leu-Phe receptor Prostaglandin E2 receptor EP3 subtype Solute carrier organic anion transporter family member 1B3 Neurotensin receptor type 1 Thyroid hormone receptor beta Squalene synthase Geranylgeranyl pyrophosphate synthase Prostaglandin G/H synthase 2 Proto-oncogene tyrosine-protein kinase Src Nuclear receptor subfamily 1 group I member 2 Potassium voltage-gated channel subfamily KQT member 4 cGMP-inhibited 3',5'-cyclic phosphodiesterase A Nuclear receptor subfamily 1 group D member 1 cGMP-gated cation channel alpha-1 Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit delta isoform Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform B2 bradykinin receptor B1 bradykinin receptor Prostaglandin F2-alpha receptor Oxoeicosanoid receptor 1 Bile acid receptor Sodium- and chloride-dependent GABA transporter 1 Histone acetyltransferase KAT2B Neuronal acetylcholine receptor subunit alpha-7 P2Y purinoceptor 6 Potassium voltage-gated channel subfamily H member 2 Fatty-acid amide hydrolase 1 Anoctamin-1 Aquaporin-1 Nitric oxide synthase, brain Potassium voltage-gated channel subfamily KQT member 2 Thyroid hormone receptor alpha Potassium voltage-gated channel subfamily H member 1 Pannexin-3 Sigma non-opioid intracellular receptor 1 Alpha-1B adrenergic receptor cAMP-specific 3',5'-cyclic phosphodiesterase 7B Serine/threonine-protein kinase mTOR Tyrosine-protein kinase ABL1 Melanocortin receptor 5 Inward rectifier potassium channel 2 Potassium voltage-gated channel subfamily A member 7 Tyrosine-protein kinase Lck Oxysterols receptor LXR-alpha Gamma-aminobutyric acid receptor subunit delta Histone deacetylase 10 Proton-coupled amino acid transporter 1 Metabotropic glutamate receptor 1 Glycine receptor subunit beta Tyrosine-protein kinase Yes Dual specificity mitogen-activated protein kinase kinase 1 Mitogen-activated protein kinase 14 High affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A
Which nutrients exactly 2 chemical substances and nutrients interact with
Proto-oncogene tyrosine-protein kinase Src Tyrosine-protein kinase ABL1 Serine/threonine-protein kinase mTOR
action equal
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
value 2
[[{'concept': 'chemical substance'}, {'concept': 'nutrient'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?c WHERE { { SELECT DISTINCT ( COUNT ( ?f ) AS ?t ) ?c WHERE { { ?f property:physically_interacts_with ?c . ?c rdf:type ontology:nutrient . ?f rdf:type ontology:chemical_substance } UNION { ?c rdf:type ontology:nutrient . ?f rdf:type ontology:nutrient . ?f property:physically_interacts_with ?c } } GROUP BY ?c } . FILTER ( ?t = 2 ) }
[]
Clarification
Quantitative|Count|Single entity type|Indirect
P688
Q863908
USER
How many nucleic acid sequences encodes that nutrient ?
(c(Q863908),P688,Q285613)
[{'concept': 'Q863908'}, 'P688', 'Q285613']
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { ?z property:P688 resource:Q14876092 . ?z rdf:type ontology:Q863908 }
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Serine/threonine-protein kinase mTOR']
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { ?z property:encodes resource:Serine/threonine-protein_kinase_mTOR . ?z rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Quantitative|Count|Single entity type|Clarification
Q285613
SYSTEM
Did you mean Serine/threonine-protein kinase mTOR ?
(c(Q863908),P688,Q21109354) (c(Q863908),P688,Q587961) (c(Q863908),P688,Q285613)
[ANSWER]
[{'concept': 'Q863908'}, 'P688', 'Q21109354'] [{'concept': 'Q863908'}, 'P688', 'Q587961'] [{'concept': 'Q863908'}, 'P688', 'Q285613']
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { ?z property:P688 resource:Q14876092 . ?z rdf:type ontology:Q863908 }
Did you mean Serine/threonine-protein kinase mTOR ?
Serine/threonine-protein kinase mTOR
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Proto-oncogene tyrosine-protein kinase Src'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'Tyrosine-protein kinase ABL1'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'Serine/threonine-protein kinase mTOR']
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { ?z property:encodes resource:Serine/threonine-protein_kinase_mTOR . ?z rdf:type ontology:nucleic_acid_sequence }
[]
Quantitative Reasoning (Count) (All)
USER
Yes
(c(Q863908),P688,Q285613)
[{'concept': 'Q863908'}, 'P688', 'Q285613']
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Serine/threonine-protein kinase mTOR']
[]
SYSTEM
1
Q14876086
(c(Q863908),P688,Q285613)
[ANSWER]
[{'concept': 'Q863908'}, 'P688', 'Q285613']
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { ?z property:P688 resource:Q14876092 . ?z rdf:type ontology:Q863908 }
MTOR
1
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Serine/threonine-protein kinase mTOR']
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { ?z property:encodes resource:Serine/threonine-protein_kinase_mTOR . ?z rdf:type ontology:nucleic_acid_sequence }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type
Q21109354
P129
Q8386
USER
How many drugs do Proto-oncogene tyrosine-protein kinase Src collaborate with ?
(Q21109354,P129,c(Q8386))
action count
action filter_type
action find
entity Q21109354
relation P129
type Q8386
['Q21109354', 'P129', {'concept': 'Q8386'}]
SELECT DISTINCT ( COUNT ( ?x ) AS ?h ) WHERE { resource:Q21109354 property:P129 ?x . ?x rdf:type ontology:Q8386 }
Proto-oncogene tyrosine-protein kinase Src
action count
action filter_type
action find
entity Proto-oncogene tyrosine-protein kinase Src
relation physically interacts with
type drug
['Proto-oncogene tyrosine-protein kinase Src', 'physically interacts with', {'concept': 'drug'}]
SELECT DISTINCT ( COUNT ( ?x ) AS ?h ) WHERE { resource:Proto-oncogene_tyrosine-protein_kinase_Src property:physically_interacts_with ?x . ?x rdf:type ontology:drug }
[]
drug
SYSTEM
2
Q894611 Q419940
(Q21109354,P129,c(Q8386))
action count
action filter_type
action find
entity Q21109354
relation P129
type Q8386
[ANSWER]
['Q21109354', 'P129', {'concept': 'Q8386'}]
SELECT DISTINCT ( COUNT ( ?x ) AS ?h ) WHERE { resource:Q21109354 property:P129 ?x . ?x rdf:type ontology:Q8386 }
bosutinib dasatinib
2
action count
action filter_type
action find
entity Proto-oncogene tyrosine-protein kinase Src
relation physically interacts with
type drug
['Proto-oncogene tyrosine-protein kinase Src', 'physically interacts with', {'concept': 'drug'}]
SELECT DISTINCT ( COUNT ( ?x ) AS ?h ) WHERE { resource:Proto-oncogene_tyrosine-protein_kinase_Src property:physically_interacts_with ?x . ?x rdf:type ontology:drug }
[]