Simple Question (Direct)
Simple Question
Q22232883
P702
Q863908
USER
What encodes peroxiredoxin    Rv1608c ?
(Q22232883,P702,c(Q863908))
action filter_type
action find
entity Q22232883
relation P702
type Q863908
['Q22232883', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?u WHERE { resource:Q22232883 property:P702 ?u . ?u rdf:type ontology:Q863908 }
peroxiredoxin    Rv1608c
action filter_type
action find
entity peroxiredoxin    Rv1608c
relation encoded by
type nucleic acid sequence
['peroxiredoxin    Rv1608c', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?u WHERE { resource:peroxiredoxin____Rv1608c property:encoded_by ?u . ?u rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q22228413
SYSTEM
peroxiredoxin    Rv1608c
Q22228413
(Q22232883,P702,c(Q863908))
action filter_type
action find
entity Q22232883
relation P702
type Q863908
Peroxiredoxin Rv1608c encodes peroxiredoxin Rv1608c
['Q22232883', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?u WHERE { resource:Q22232883 property:P702 ?u . ?u rdf:type ontology:Q863908 }
peroxiredoxin    Rv1608c
Peroxiredoxin Rv1608c encodes peroxiredoxin Rv1608c
peroxiredoxin    Rv1608c
action filter_type
action find
entity peroxiredoxin    Rv1608c
relation encoded by
type nucleic acid sequence
['peroxiredoxin    Rv1608c', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?u WHERE { resource:peroxiredoxin____Rv1608c property:encoded_by ?u . ?u rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q22232883
P682
Q1057
USER
What is the metabolic process that peroxiredoxin    Rv1608c is involved in ?
(Q22232883,P682,c(Q1057))
action filter_type
action find
entity Q22232883
relation P682
type Q1057
['Q22232883', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?q WHERE { resource:Q22232883 property:P682 ?q . ?q rdf:type ontology:Q1057 }
peroxiredoxin    Rv1608c
action filter_type
action find
entity peroxiredoxin    Rv1608c
relation biological process
type metabolic process
['peroxiredoxin    Rv1608c', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?q WHERE { resource:peroxiredoxin____Rv1608c property:biological_process ?q . ?q rdf:type ontology:metabolic_process }
[]
metabolic process
Q14349764
SYSTEM
oxidation-reduction process
Q14349764
(Q22232883,P682,c(Q1057))
action filter_type
action find
entity Q22232883
relation P682
type Q1057
The metabolic process that peroxiredoxin Rv1608c is involved in is the [ANSWER]
['Q22232883', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?q WHERE { resource:Q22232883 property:P682 ?q . ?q rdf:type ontology:Q1057 }
oxidation-reduction process
The metabolic process that peroxiredoxin Rv1608c is involved in is the oxidation-reduction process
oxidation-reduction process
action filter_type
action find
entity peroxiredoxin    Rv1608c
relation biological process
type metabolic process
['peroxiredoxin    Rv1608c', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?q WHERE { resource:peroxiredoxin____Rv1608c property:biological_process ?q . ?q rdf:type ontology:metabolic_process }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q22232883
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(c(Q863908),P688,Q14349764)
action filter_type
action find_reverse
entity Q22232883
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q14349764']
SELECT DISTINCT ?q WHERE { ?q property:P688 resource:Q22232883 . ?q rdf:type ontology:Q863908 }
peroxiredoxin    Rv1608c
action filter_type
action find_reverse
entity peroxiredoxin    Rv1608c
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'oxidation-reduction process']
SELECT DISTINCT ?q WHERE { ?q property:encodes resource:peroxiredoxin____Rv1608c . ?q rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q22228413
SYSTEM
peroxiredoxin    Rv1608c
Q22228413
(c(Q863908),P688,Q14349764)
action filter_type
action find_reverse
entity Q22232883
relation P688
type Q863908
Peroxiredoxin Rv1608c encodes that nutrient
[{'concept': 'Q863908'}, 'P688', 'Q14349764']
SELECT DISTINCT ?q WHERE { ?q property:P688 resource:Q22232883 . ?q rdf:type ontology:Q863908 }
peroxiredoxin    Rv1608c
Peroxiredoxin Rv1608c encodes that nutrient
peroxiredoxin    Rv1608c
action filter_type
action find_reverse
entity peroxiredoxin    Rv1608c
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'oxidation-reduction process']
SELECT DISTINCT ?q WHERE { ?q property:encodes resource:peroxiredoxin____Rv1608c . ?q rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q22232883
P703
Q631147
USER
What is the taxon to which peroxiredoxin    Rv1608c belongs to ?
(Q22232883,P703,c(Q631147))
action filter_type
action find
entity Q22232883
relation P703
type Q631147
['Q22232883', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?i WHERE { resource:Q22232883 property:P703 ?i . ?i rdf:type ontology:Q631147 }
peroxiredoxin    Rv1608c
action filter_type
action find
entity peroxiredoxin    Rv1608c
relation found in taxon
type infraspecific name
['peroxiredoxin    Rv1608c', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?i WHERE { resource:peroxiredoxin____Rv1608c property:found_in_taxon ?i . ?i rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102987
SYSTEM
Mycobacterium tuberculosis H37Rv
Q21102987
(Q22232883,P703,c(Q631147))
action filter_type
action find
entity Q22232883
relation P703
type Q631147
H [ANSWER]
['Q22232883', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?i WHERE { resource:Q22232883 property:P703 ?i . ?i rdf:type ontology:Q631147 }
Mycobacterium tuberculosis H37Rv
H Mycobacterium tuberculosis H37Rv
Mycobacterium tuberculosis H37Rv
action filter_type
action find
entity peroxiredoxin    Rv1608c
relation found in taxon
type infraspecific name
['peroxiredoxin    Rv1608c', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?i WHERE { resource:peroxiredoxin____Rv1608c property:found_in_taxon ?i . ?i rdf:type ontology:infraspecific_name }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q22232883
P681
Q223557
USER
Which physical object is a component of peroxiredoxin    Rv1608c ?
(Q22232883,P681,c(Q223557))
action filter_type
action find
entity Q22232883
relation P681
type Q223557
['Q22232883', 'P681', {'concept': 'Q223557'}]
SELECT DISTINCT ?o WHERE { resource:Q22232883 property:P681 ?o . ?o rdf:type ontology:Q223557 }
peroxiredoxin    Rv1608c
action filter_type
action find
entity peroxiredoxin    Rv1608c
relation cell component
type physical object
['peroxiredoxin    Rv1608c', 'cell component', {'concept': 'physical object'}]
SELECT DISTINCT ?o WHERE { resource:peroxiredoxin____Rv1608c property:cell_component ?o . ?o rdf:type ontology:physical_object }
[]
physical object
Q7868
SYSTEM
cell
Q7868
(Q22232883,P681,c(Q223557))
action filter_type
action find
entity Q22232883
relation P681
type Q223557
The [ANSWER] is a component of peroxiredoxin Rv1608c
['Q22232883', 'P681', {'concept': 'Q223557'}]
SELECT DISTINCT ?o WHERE { resource:Q22232883 property:P681 ?o . ?o rdf:type ontology:Q223557 }
cell
The cell is a component of peroxiredoxin Rv1608c
cell
action filter_type
action find
entity peroxiredoxin    Rv1608c
relation cell component
type physical object
['peroxiredoxin    Rv1608c', 'cell component', {'concept': 'physical object'}]
SELECT DISTINCT ?o WHERE { resource:peroxiredoxin____Rv1608c property:cell_component ?o . ?o rdf:type ontology:physical_object }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q7868
P361
Q15989253
USER
Which part is a component of that physical object ?
(c(Q15989253),P361,Q7868)
action filter_type
action find_reverse
entity Q7868
relation P361
type Q15989253
[{'concept': 'Q15989253'}, 'P361', 'Q7868']
SELECT DISTINCT ?y WHERE { ?y property:P361 resource:Q7868 . ?y rdf:type ontology:Q15989253 }
cell
action filter_type
action find_reverse
entity cell
relation part of
type part
[{'concept': 'part'}, 'part of', 'cell']
SELECT DISTINCT ?y WHERE { ?y property:part_of resource:cell . ?y rdf:type ontology:part }
[]
part
Q14864881
SYSTEM
cell part
Q14864881
(c(Q15989253),P361,Q7868)
action filter_type
action find_reverse
entity Q7868
relation P361
type Q15989253
[ANSWER] is a component of that physical object
[{'concept': 'Q15989253'}, 'P361', 'Q7868']
SELECT DISTINCT ?y WHERE { ?y property:P361 resource:Q7868 . ?y rdf:type ontology:Q15989253 }
cell part
Cell part is a component of that physical object
cell part
action filter_type
action find_reverse
entity cell
relation part of
type part
[{'concept': 'part'}, 'part of', 'cell']
SELECT DISTINCT ?y WHERE { ?y property:part_of resource:cell . ?y rdf:type ontology:part }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q24723166
Q15989253
USER
And what about Lysidine-tRNA(Ile) synthetase, C-terminal?
(Q24723166,P361,c(Q15989253))
action filter_type
action find
entity Q24723166
relation P361
type Q15989253
['Q24723166', 'P361', {'concept': 'Q15989253'}]
SELECT DISTINCT ?n WHERE { ?n rdf:type ontology:Q15989253 . resource:Q24723166 property:P361 ?n }
Lysidine-tRNA(Ile) synthetase, C-terminal
action filter_type
action find
entity Lysidine-tRNA(Ile) synthetase, C-terminal
relation part of
type part
['Lysidine-tRNA(Ile) synthetase, C-terminal', 'part of', {'concept': 'part'}]
SELECT DISTINCT ?n WHERE { ?n rdf:type ontology:part . resource:Lysidine-tRNA(Ile)_synthetase,_C-terminal property:part_of ?n }
[]
part
Q24724896
SYSTEM
tRNA(Ile)-lysidine synthase , substrate-binding domain
Q24724896
(Q24723166,P361,c(Q15989253))
action filter_type
action find
entity Q24723166
relation P361
type Q15989253
[ANSWER]
['Q24723166', 'P361', {'concept': 'Q15989253'}]
SELECT DISTINCT ?n WHERE { ?n rdf:type ontology:Q15989253 . resource:Q24723166 property:P361 ?n }
tRNA(Ile)-lysidine synthase , substrate-binding domain
tRNA(Ile)-lysidine synthase , substrate-binding domain
action filter_type
action find
entity Lysidine-tRNA(Ile) synthetase, C-terminal
relation part of
type part
['Lysidine-tRNA(Ile) synthetase, C-terminal', 'part of', {'concept': 'part'}]
SELECT DISTINCT ?n WHERE { ?n rdf:type ontology:part . resource:Lysidine-tRNA(Ile)_synthetase,_C-terminal property:part_of ?n }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Single entity type|Indirect
P361
Q15989253 Q5058355
USER
How many parts are more number of cellular components a portion of than that part ?
(c(Q5058355),P361,c(Q15989253))
action count
action greater
action find_reverse_tuple_counts
relation P361
type Q15989253
type Q5058355
action count
action filter_type
action find
entity Q24724896
relation P361
type Q15989253
[{'concept': 'Q5058355'}, 'P361', {'concept': 'Q15989253'}]
SELECT DISTINCT ( COUNT ( ?a ) AS ?l ) WHERE { FILTER ( ?b > ?n ) . { SELECT DISTINCT ( COUNT ( ?s ) AS ?n ) WHERE { ?s rdf:type ontology:Q15989253 . resource:Q24724896 property:P361 ?s } } . { SELECT DISTINCT ?a ( COUNT ( ?m ) AS ?b ) WHERE { ?m property:P361 ?a . ?m rdf:type ontology:Q5058355 . ?a rdf:type ontology:Q15989253 } GROUP BY ?a } }
action count
action greater
action find_reverse_tuple_counts
relation part of
type part
type cellular component
action count
action filter_type
action find
entity tRNA(Ile)-lysidine synthase , substrate-binding domain
relation part of
type part
[{'concept': 'cellular component'}, 'part of', {'concept': 'part'}]
SELECT DISTINCT ( COUNT ( ?a ) AS ?l ) WHERE { FILTER ( ?b > ?n ) . { SELECT DISTINCT ( COUNT ( ?s ) AS ?n ) WHERE { ?s rdf:type ontology:part . resource:tRNA(Ile)-lysidine_synthase_,_substrate-binding_domain property:part_of ?s } } . { SELECT DISTINCT ?a ( COUNT ( ?m ) AS ?b ) WHERE { ?m property:part_of ?a . ?m rdf:type ontology:cellular_component . ?a rdf:type ontology:part } GROUP BY ?a } }
[]
part cellular component
SYSTEM
8
Q14349455 Q22328948 Q22327470 Q187181 Q165963 Q45948 Q14645596 Q39572
(c(Q5058355),P361,c(Q15989253))
action count
action greater
action find_reverse_tuple_counts
relation P361
type Q15989253
type Q5058355
action count
action filter_type
action find
entity Q24724896
relation P361
type Q15989253
[ANSWER]
[{'concept': 'Q5058355'}, 'P361', {'concept': 'Q15989253'}]
SELECT DISTINCT ( COUNT ( ?a ) AS ?l ) WHERE { FILTER ( ?b > ?n ) . { SELECT DISTINCT ( COUNT ( ?s ) AS ?n ) WHERE { ?s rdf:type ontology:Q15989253 . resource:Q24724896 property:P361 ?s } } . { SELECT DISTINCT ?a ( COUNT ( ?m ) AS ?b ) WHERE { ?m property:P361 ?a . ?m rdf:type ontology:Q5058355 . ?a rdf:type ontology:Q15989253 } GROUP BY ?a } }
membrane virion mitochondrion-associated adherens complex synapse plastid organelle extracellular region mitochondrion
8
action count
action greater
action find_reverse_tuple_counts
relation part of
type part
type cellular component
action count
action filter_type
action find
entity tRNA(Ile)-lysidine synthase , substrate-binding domain
relation part of
type part
[{'concept': 'cellular component'}, 'part of', {'concept': 'part'}]
SELECT DISTINCT ( COUNT ( ?a ) AS ?l ) WHERE { FILTER ( ?b > ?n ) . { SELECT DISTINCT ( COUNT ( ?s ) AS ?n ) WHERE { ?s rdf:type ontology:part . resource:tRNA(Ile)-lysidine_synthase_,_substrate-binding_domain property:part_of ?s } } . { SELECT DISTINCT ?a ( COUNT ( ?m ) AS ?b ) WHERE { ?m property:part_of ?a . ?m rdf:type ontology:cellular_component . ?a rdf:type ontology:part } GROUP BY ?a } }
[]
Quantitative Reasoning (Count) (All)
Incomplete count-based ques
Q24722659
Q15989253
USER
And what about ATPase, V1 complex, subunit H, C-terminal?
(Q24722659,P361,c(Q15989253))
action count
action filter_type
action find
entity Q24722659
relation P361
type Q15989253
['Q24722659', 'P361', {'concept': 'Q15989253'}]
SELECT DISTINCT ( COUNT ( ?u ) AS ?w ) WHERE { resource:Q24722659 property:P361 ?u . ?u rdf:type ontology:Q15989253 }
ATPase, V1 complex, subunit H, C-terminal
action count
action filter_type
action find
entity ATPase, V1 complex, subunit H, C-terminal
relation part of
type part
['ATPase, V1 complex, subunit H, C-terminal', 'part of', {'concept': 'part'}]
SELECT DISTINCT ( COUNT ( ?u ) AS ?w ) WHERE { resource:ATPase,_V1_complex,_subunit_H,_C-terminal property:part_of ?u . ?u rdf:type ontology:part }
[]
part
SYSTEM
1
(Q24722659,P361,c(Q15989253))
action count
action filter_type
action find
entity Q24722659
relation P361
type Q15989253
[ANSWER]
['Q24722659', 'P361', {'concept': 'Q15989253'}]
SELECT DISTINCT ( COUNT ( ?u ) AS ?w ) WHERE { resource:Q24722659 property:P361 ?u . ?u rdf:type ontology:Q15989253 }
1
action count
action filter_type
action find
entity ATPase, V1 complex, subunit H, C-terminal
relation part of
type part
['ATPase, V1 complex, subunit H, C-terminal', 'part of', {'concept': 'part'}]
SELECT DISTINCT ( COUNT ( ?u ) AS ?w ) WHERE { resource:ATPase,_V1_complex,_subunit_H,_C-terminal property:part_of ?u . ?u rdf:type ontology:part }
[]