Simple Question (Direct)
Simple Question
Q21438727
P703
Q16521
USER
Where is Acyl-CoA desaturase 3 found ?
(Q21438727,P703,c(Q16521))
action filter_type
action find
entity Q21438727
relation P703
type Q16521
['Q21438727', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?o WHERE { resource:Q21438727 property:P703 ?o . ?o rdf:type ontology:Q16521 }
Acyl-CoA desaturase 3
action filter_type
action find
entity Acyl-CoA desaturase 3
relation found in taxon
type taxon
['Acyl-CoA desaturase 3', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?o WHERE { resource:Acyl-CoA_desaturase_3 property:found_in_taxon ?o . ?o rdf:type ontology:taxon }
[]
taxon
Q83310
SYSTEM
Mus musculus
Q83310
(Q21438727,P703,c(Q16521))
action filter_type
action find
entity Q21438727
relation P703
type Q16521
Acyl-CoA desaturase 3 is found in [ANSWER]
['Q21438727', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?o WHERE { resource:Q21438727 property:P703 ?o . ?o rdf:type ontology:Q16521 }
Mus musculus
Acyl-CoA desaturase 3 is found in Mus musculus
Mus musculus
action filter_type
action find
entity Acyl-CoA desaturase 3
relation found in taxon
type taxon
['Acyl-CoA desaturase 3', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?o WHERE { resource:Acyl-CoA_desaturase_3 property:found_in_taxon ?o . ?o rdf:type ontology:taxon }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21438727
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(c(Q863908),P688,Q83310)
action filter_type
action find_reverse
entity Q21438727
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q83310']
SELECT DISTINCT ?j WHERE { ?j property:P688 resource:Q21438727 . ?j rdf:type ontology:Q863908 }
Acyl-CoA desaturase 3
action filter_type
action find_reverse
entity Acyl-CoA desaturase 3
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Mus musculus']
SELECT DISTINCT ?j WHERE { ?j property:encodes resource:Acyl-CoA_desaturase_3 . ?j rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18256716
SYSTEM
Scd3
Q18256716
(c(Q863908),P688,Q83310)
action filter_type
action find_reverse
entity Q21438727
relation P688
type Q863908
[ANSWER] encodes that nutrient
[{'concept': 'Q863908'}, 'P688', 'Q83310']
SELECT DISTINCT ?j WHERE { ?j property:P688 resource:Q21438727 . ?j rdf:type ontology:Q863908 }
Scd3
Scd3 encodes that nutrient
Scd3
action filter_type
action find_reverse
entity Acyl-CoA desaturase 3
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Mus musculus']
SELECT DISTINCT ?j WHERE { ?j property:encodes resource:Acyl-CoA_desaturase_3 . ?j rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18256716
P702
Q181394
USER
What is the gene that is encoded by that nucleic acid sequence ?
(c(Q181394),P702,Q18256716)
action filter_type
action find_reverse
entity Q18256716
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q18256716']
SELECT DISTINCT ?k WHERE { ?k property:P702 resource:Q18256716 . ?k rdf:type ontology:Q181394 }
Scd3
action filter_type
action find_reverse
entity Scd3
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'Scd3']
SELECT DISTINCT ?k WHERE { ?k property:encoded_by resource:Scd3 . ?k rdf:type ontology:nutrient }
[]
nutrient
Q21438727
SYSTEM
Acyl-CoA desaturase 3
Q21438727
(c(Q181394),P702,Q18256716)
action filter_type
action find_reverse
entity Q18256716
relation P702
type Q181394
The gene that is encoded by that nucleic acid sequence is [ANSWER]
[{'concept': 'Q181394'}, 'P702', 'Q18256716']
SELECT DISTINCT ?k WHERE { ?k property:P702 resource:Q18256716 . ?k rdf:type ontology:Q181394 }
Acyl-CoA desaturase 3
The gene that is encoded by that nucleic acid sequence is Acyl-CoA desaturase 3
Acyl-CoA desaturase 3
action filter_type
action find_reverse
entity Scd3
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'Scd3']
SELECT DISTINCT ?k WHERE { ?k property:encoded_by resource:Scd3 . ?k rdf:type ontology:nutrient }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation|Incomplete
Q23260757 Q18256716
P702
Q181394
USER
Or deoxyribonuclease TatD (YjjV protein)    Mb1035?
OR((c(Q181394),P702,Q18256716), (c(Q181394),P702,Q23260757))
action filter_type
action union
action find_reverse
entity Q18256716
relation P702
action find_reverse
entity Q23260757
relation P702
type Q181394
{'OR': [[{'concept': 'Q181394'}, 'P702', 'Q18256716'], [{'concept': 'Q181394'}, 'P702', 'Q23260757']]}
SELECT DISTINCT ?i WHERE { { { ?i property:P702 resource:Q18256716 } UNION { ?i property:P702 resource:Q23260757 } } . ?i rdf:type ontology:Q181394 }
deoxyribonuclease TatD (YjjV protein)    Mb1035 Scd3
action filter_type
action union
action find_reverse
entity Scd3
relation encoded by
action find_reverse
entity deoxyribonuclease TatD (YjjV protein)    Mb1035
relation encoded by
type nutrient
{'OR': [[{'concept': 'nutrient'}, 'encoded by', 'Scd3'], [{'concept': 'nutrient'}, 'encoded by', 'deoxyribonuclease TatD (YjjV protein)    Mb1035']]}
SELECT DISTINCT ?i WHERE { { { ?i property:encoded_by resource:Scd3 } UNION { ?i property:encoded_by resource:deoxyribonuclease_TatD_(YjjV_protein)____Mb1035 } } . ?i rdf:type ontology:nutrient }
[]
nutrient
Q21438727 Q27738898
SYSTEM
Acyl-CoA desaturase 3, deoxyribonuclease TatD (YjjV protein)    Mb1035
Q21438727 Q27738898
OR((c(Q181394),P702,Q18256716), (c(Q181394),P702,Q23260757))
action filter_type
action union
action find_reverse
entity Q18256716
relation P702
action find_reverse
entity Q23260757
relation P702
type Q181394
[ANSWERS]
{'OR': [[{'concept': 'Q181394'}, 'P702', 'Q18256716'], [{'concept': 'Q181394'}, 'P702', 'Q23260757']]}
SELECT DISTINCT ?i WHERE { { { ?i property:P702 resource:Q18256716 } UNION { ?i property:P702 resource:Q23260757 } } . ?i rdf:type ontology:Q181394 }
Acyl-CoA desaturase 3 deoxyribonuclease TatD (YjjV protein)    Mb1035
Acyl-CoA desaturase 3 deoxyribonuclease TatD (YjjV protein)    Mb1035
action filter_type
action union
action find_reverse
entity Scd3
relation encoded by
action find_reverse
entity deoxyribonuclease TatD (YjjV protein)    Mb1035
relation encoded by
type nutrient
{'OR': [[{'concept': 'nutrient'}, 'encoded by', 'Scd3'], [{'concept': 'nutrient'}, 'encoded by', 'deoxyribonuclease TatD (YjjV protein)    Mb1035']]}
SELECT DISTINCT ?i WHERE { { { ?i property:encoded_by resource:Scd3 } UNION { ?i property:encoded_by resource:deoxyribonuclease_TatD_(YjjV_protein)____Mb1035 } } . ?i rdf:type ontology:nutrient }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23486966 Q21438727
P702
Q863908
USER
Which nucleic acid sequences encode Acyl-CoA desaturase 3 or ribonuclease BN    SSA_1490 ?
OR((Q21438727,P702,c(Q863908)), (Q23486966,P702,c(Q863908)))
action filter_type
action union
action find
entity Q21438727
relation P702
action find
entity Q23486966
relation P702
type Q863908
{'OR': [['Q21438727', 'P702', {'concept': 'Q863908'}], ['Q23486966', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?t WHERE { { { resource:Q21438727 property:P702 ?t } UNION { resource:Q23486966 property:P702 ?t } } . ?t rdf:type ontology:Q863908 }
ribonuclease BN    SSA_1490 Acyl-CoA desaturase 3
action filter_type
action union
action find
entity Acyl-CoA desaturase 3
relation encoded by
action find
entity ribonuclease BN    SSA_1490
relation encoded by
type nucleic acid sequence
{'OR': [['Acyl-CoA desaturase 3', 'encoded by', {'concept': 'nucleic acid sequence'}], ['ribonuclease BN    SSA_1490', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?t WHERE { { { resource:Acyl-CoA_desaturase_3 property:encoded_by ?t } UNION { resource:ribonuclease_BN____SSA_1490 property:encoded_by ?t } } . ?t rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18256716 Q23402826
SYSTEM
Scd3, ribonuclease BN    SSA_1490
Q18256716 Q23402826
OR((Q21438727,P702,c(Q863908)), (Q23486966,P702,c(Q863908)))
action filter_type
action union
action find
entity Q21438727
relation P702
action find
entity Q23486966
relation P702
type Q863908
[ANSWERS]
{'OR': [['Q21438727', 'P702', {'concept': 'Q863908'}], ['Q23486966', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?t WHERE { { { resource:Q21438727 property:P702 ?t } UNION { resource:Q23486966 property:P702 ?t } } . ?t rdf:type ontology:Q863908 }
Scd3 ribonuclease BN    SSA_1490
Scd3 and ribonuclease BN SSA 1490 encode Acyl-CoA desaturase 3 or ribonuclease BN SSA_1490
Scd3 ribonuclease BN    SSA_1490
action filter_type
action union
action find
entity Acyl-CoA desaturase 3
relation encoded by
action find
entity ribonuclease BN    SSA_1490
relation encoded by
type nucleic acid sequence
{'OR': [['Acyl-CoA desaturase 3', 'encoded by', {'concept': 'nucleic acid sequence'}], ['ribonuclease BN    SSA_1490', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?t WHERE { { { resource:Acyl-CoA_desaturase_3 property:encoded_by ?t } UNION { resource:ribonuclease_BN____SSA_1490 property:encoded_by ?t } } . ?t rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23486966
P681
Q15989253
USER
Which is the part that is a component of ribonuclease BN    SSA_1490?
(Q18256716,P681,c(Q15989253)) (Q23402826,P681,c(Q15989253))
action filter_type
action find
entity Q23486966
relation P681
type Q15989253
['Q18256716', 'P681', {'concept': 'Q15989253'}] ['Q23402826', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?y WHERE { resource:Q23486966 property:P681 ?y . ?y rdf:type ontology:Q15989253 }
ribonuclease BN    SSA_1490
action filter_type
action find
entity ribonuclease BN    SSA_1490
relation cell component
type part
['Scd3', 'cell component', {'concept': 'part'}] ['ribonuclease BN    SSA_1490', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?y WHERE { resource:ribonuclease_BN____SSA_1490 property:cell_component ?y . ?y rdf:type ontology:part }
[]
part
Q14349455
SYSTEM
membrane
Q14349455
(Q18256716,P681,c(Q15989253)) (Q23402826,P681,c(Q15989253))
action filter_type
action find
entity Q23486966
relation P681
type Q15989253
The [ANSWER] is the part that is a component of ribonuclease BN SSA_1490
['Q18256716', 'P681', {'concept': 'Q15989253'}] ['Q23402826', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?y WHERE { resource:Q23486966 property:P681 ?y . ?y rdf:type ontology:Q15989253 }
membrane
The membrane is the part that is a component of ribonuclease BN SSA_1490
membrane
action filter_type
action find
entity ribonuclease BN    SSA_1490
relation cell component
type part
['Scd3', 'cell component', {'concept': 'part'}] ['ribonuclease BN    SSA_1490', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?y WHERE { resource:ribonuclease_BN____SSA_1490 property:cell_component ?y . ?y rdf:type ontology:part }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q14349455 Q23066649
P681
Q181394
USER
Is that part a cell component of hypothetical protein    LA_3744 ?
(Q23066649,P681,Q14349455)
action is_in
entity Q14349455
action find
entity Q23066649
relation P681
['Q23066649', 'P681', 'Q14349455']
ASK WHERE { resource:Q23066649 property:P681 resource:Q14349455 }
membrane hypothetical protein    LA_3744
action is_in
entity membrane
action find
entity hypothetical protein    LA_3744
relation cell component
['hypothetical protein    LA_3744', 'cell component', 'membrane']
ASK WHERE { resource:hypothetical_protein____LA_3744 property:cell_component resource:membrane }
[]
nutrient
SYSTEM
YES
(Q23066649,P681,Q14349455)
action is_in
entity Q14349455
action find
entity Q23066649
relation P681
[ANSWER]
['Q23066649', 'P681', 'Q14349455']
ASK WHERE { resource:Q23066649 property:P681 resource:Q14349455 }
Yes
action is_in
entity membrane
action find
entity hypothetical protein    LA_3744
relation cell component
['hypothetical protein    LA_3744', 'cell component', 'membrane']
ASK WHERE { resource:hypothetical_protein____LA_3744 property:cell_component resource:membrane }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q27738898 Q24619806
P702
Q863908
USER
Does LOC105463395 encode deoxyribonuclease TatD (YjjV protein)    Mb1035 ?
(Q27738898,P702,Q24619806)
action is_in
entity Q24619806
action find
entity Q27738898
relation P702
['Q27738898', 'P702', 'Q24619806']
ASK WHERE { resource:Q27738898 property:P702 resource:Q24619806 }
deoxyribonuclease TatD (YjjV protein)    Mb1035 LOC105463395
action is_in
entity LOC105463395
action find
entity deoxyribonuclease TatD (YjjV protein)    Mb1035
relation encoded by
['deoxyribonuclease TatD (YjjV protein)    Mb1035', 'encoded by', 'LOC105463395']
ASK WHERE { resource:deoxyribonuclease_TatD_(YjjV_protein)____Mb1035 property:encoded_by resource:LOC105463395 }
[]
nucleic acid sequence
SYSTEM
NO
(Q27738898,P702,Q24619806)
action is_in
entity Q24619806
action find
entity Q27738898
relation P702
[ANSWER]
['Q27738898', 'P702', 'Q24619806']
ASK WHERE { resource:Q27738898 property:P702 resource:Q24619806 }
No
action is_in
entity LOC105463395
action find
entity deoxyribonuclease TatD (YjjV protein)    Mb1035
relation encoded by
['deoxyribonuclease TatD (YjjV protein)    Mb1035', 'encoded by', 'LOC105463395']
ASK WHERE { resource:deoxyribonuclease_TatD_(YjjV_protein)____Mb1035 property:encoded_by resource:LOC105463395 }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Mult. entity type
Q27738898 Q23350693
P703
Q631147
USER
How many infraspecific names are deoxyribonuclease TatD (YjjV protein)    Mb1035 or transcription attenuation protein MtrB    BSU22770 found in ?
(Q27738898,P703,c(Q631147)) (Q23350693,P703,c(Q631147))
action count
action union
action filter_type
action find
entity Q27738898
relation P703
type Q631147
action filter_type
action find
entity Q23350693
relation P703
type Q631147
['Q27738898', 'P703', {'concept': 'Q631147'}] ['Q23350693', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ( COUNT ( ?i ) AS ?s ) WHERE { ?x property:P703 ?i . VALUES ( ?x ) { ( resource:Q27738898 ) ( resource:Q23350693 ) } }
deoxyribonuclease TatD (YjjV protein)    Mb1035 transcription attenuation protein MtrB    BSU22770
action count
action union
action filter_type
action find
entity deoxyribonuclease TatD (YjjV protein)    Mb1035
relation found in taxon
type infraspecific name
action filter_type
action find
entity transcription attenuation protein MtrB    BSU22770
relation found in taxon
type infraspecific name
['deoxyribonuclease TatD (YjjV protein)    Mb1035', 'found in taxon', {'concept': 'infraspecific name'}] ['transcription attenuation protein MtrB    BSU22770', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ( COUNT ( ?i ) AS ?s ) WHERE { ?x property:found_in_taxon ?i . VALUES ( ?x ) { ( resource:deoxyribonuclease_TatD_(YjjV_protein)____Mb1035 ) ( resource:transcription_attenuation_protein_MtrB____BSU22770 ) } }
[]
infraspecific name
SYSTEM
2
Q21102984 Q21102971
(Q27738898,P703,c(Q631147)) (Q23350693,P703,c(Q631147))
action count
action union
action filter_type
action find
entity Q27738898
relation P703
type Q631147
action filter_type
action find
entity Q23350693
relation P703
type Q631147
[ANSWER]
['Q27738898', 'P703', {'concept': 'Q631147'}] ['Q23350693', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ( COUNT ( ?i ) AS ?s ) WHERE { ?x property:P703 ?i . VALUES ( ?x ) { ( resource:Q27738898 ) ( resource:Q23350693 ) } }
Mycobacterium bovis AF2122/97 Bacillus subtilis subsp. subtilis str. 168
2
action count
action union
action filter_type
action find
entity deoxyribonuclease TatD (YjjV protein)    Mb1035
relation found in taxon
type infraspecific name
action filter_type
action find
entity transcription attenuation protein MtrB    BSU22770
relation found in taxon
type infraspecific name
['deoxyribonuclease TatD (YjjV protein)    Mb1035', 'found in taxon', {'concept': 'infraspecific name'}] ['transcription attenuation protein MtrB    BSU22770', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ( COUNT ( ?i ) AS ?s ) WHERE { ?x property:found_in_taxon ?i . VALUES ( ?x ) { ( resource:deoxyribonuclease_TatD_(YjjV_protein)____Mb1035 ) ( resource:transcription_attenuation_protein_MtrB____BSU22770 ) } }
[]