Simple Question (Direct)
Simple Question
Q22264885
P702
Q863908
USER
What encodes DNA topoisomerase IV subunit B    NGO1333 ?
(Q22264885,P702,c(Q863908))
action filter_type
action find
entity Q22264885
relation P702
type Q863908
['Q22264885', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?t WHERE { resource:Q22264885 property:P702 ?t . ?t rdf:type ontology:Q863908 }
DNA topoisomerase IV subunit B    NGO1333
action filter_type
action find
entity DNA topoisomerase IV subunit B    NGO1333
relation encoded by
type nucleic acid sequence
['DNA topoisomerase IV subunit B    NGO1333', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?t WHERE { resource:DNA_topoisomerase_IV_subunit_B____NGO1333 property:encoded_by ?t . ?t rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q22263040
SYSTEM
DNA topoisomerase IV subunit B    NGO1333
Q22263040
(Q22264885,P702,c(Q863908))
action filter_type
action find
entity Q22264885
relation P702
type Q863908
DNA topoisomerase IV subunit B NGO1333 encodes DNA topoisomerase IV subunit B NGO1333
['Q22264885', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?t WHERE { resource:Q22264885 property:P702 ?t . ?t rdf:type ontology:Q863908 }
DNA topoisomerase IV subunit B    NGO1333
DNA topoisomerase IV subunit B NGO1333 encodes DNA topoisomerase IV subunit B NGO1333
DNA topoisomerase IV subunit B    NGO1333
action filter_type
action find
entity DNA topoisomerase IV subunit B    NGO1333
relation encoded by
type nucleic acid sequence
['DNA topoisomerase IV subunit B    NGO1333', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?t WHERE { resource:DNA_topoisomerase_IV_subunit_B____NGO1333 property:encoded_by ?t . ?t rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q22264885
P688
Q863908
USER
Which nucleic acid sequence encodes DNA topoisomerase IV subunit B    NGO1333 ?
(c(Q863908),P688,Q22264885)
action filter_type
action find_reverse
entity Q22264885
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q22264885']
SELECT DISTINCT ?a WHERE { ?a property:P688 resource:Q22264885 . ?a rdf:type ontology:Q863908 }
DNA topoisomerase IV subunit B    NGO1333
action filter_type
action find_reverse
entity DNA topoisomerase IV subunit B    NGO1333
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'DNA topoisomerase IV subunit B    NGO1333']
SELECT DISTINCT ?a WHERE { ?a property:encodes resource:DNA_topoisomerase_IV_subunit_B____NGO1333 . ?a rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q22263040
SYSTEM
DNA topoisomerase IV subunit B    NGO1333
Q22263040
(c(Q863908),P688,Q22264885)
action filter_type
action find_reverse
entity Q22264885
relation P688
type Q863908
DNA topoisomerase IV subunit B NGO1333 encodes DNA topoisomerase IV subunit B NGO1333
[{'concept': 'Q863908'}, 'P688', 'Q22264885']
SELECT DISTINCT ?a WHERE { ?a property:P688 resource:Q22264885 . ?a rdf:type ontology:Q863908 }
DNA topoisomerase IV subunit B    NGO1333
DNA topoisomerase IV subunit B NGO1333 encodes DNA topoisomerase IV subunit B NGO1333
DNA topoisomerase IV subunit B    NGO1333
action filter_type
action find_reverse
entity DNA topoisomerase IV subunit B    NGO1333
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'DNA topoisomerase IV subunit B    NGO1333']
SELECT DISTINCT ?a WHERE { ?a property:encodes resource:DNA_topoisomerase_IV_subunit_B____NGO1333 . ?a rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q22264885
P703
Q631147
USER
Which taxon does DNA topoisomerase IV subunit B    NGO1333 belong to ?
(Q22264885,P703,c(Q631147))
action filter_type
action find
entity Q22264885
relation P703
type Q631147
['Q22264885', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?o WHERE { resource:Q22264885 property:P703 ?o . ?o rdf:type ontology:Q631147 }
DNA topoisomerase IV subunit B    NGO1333
action filter_type
action find
entity DNA topoisomerase IV subunit B    NGO1333
relation found in taxon
type infraspecific name
['DNA topoisomerase IV subunit B    NGO1333', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?o WHERE { resource:DNA_topoisomerase_IV_subunit_B____NGO1333 property:found_in_taxon ?o . ?o rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102921
SYSTEM
Neisseria gonorrhoeae FA 1090
Q21102921
(Q22264885,P703,c(Q631147))
action filter_type
action find
entity Q22264885
relation P703
type Q631147
DNA topoisomerase IV subunit B NGO 1333 belongs to the [ANSWER]
['Q22264885', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?o WHERE { resource:Q22264885 property:P703 ?o . ?o rdf:type ontology:Q631147 }
Neisseria gonorrhoeae FA 1090
DNA topoisomerase IV subunit B NGO 1333 belongs to the Neisseria gonorrhoeae FA 1090
Neisseria gonorrhoeae FA 1090
action filter_type
action find
entity DNA topoisomerase IV subunit B    NGO1333
relation found in taxon
type infraspecific name
['DNA topoisomerase IV subunit B    NGO1333', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?o WHERE { resource:DNA_topoisomerase_IV_subunit_B____NGO1333 property:found_in_taxon ?o . ?o rdf:type ontology:infraspecific_name }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q181394 Q8386 Q181394
USER
How many nutrients do exactly 6 drugs or nutrients interact with ?
(c(Q8386)|c(Q181394),P129,c(Q181394))
action count
action equal
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
value 6
[[{'concept': 'Q8386'}, {'concept': 'Q181394'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?p ) AS ?h ) WHERE { { SELECT DISTINCT ( COUNT ( ?o ) AS ?t ) ?p WHERE { { ?o property:P129 ?p . ?p rdf:type ontology:Q181394 . ?o rdf:type ontology:Q8386 } UNION { ?o property:P129 ?p . ?p rdf:type ontology:Q181394 . ?o rdf:type ontology:Q181394 } } GROUP BY ?p } . FILTER ( ?t = 6 ) }
action count
action equal
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
value 6
[[{'concept': 'drug'}, {'concept': 'nutrient'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?p ) AS ?h ) WHERE { { SELECT DISTINCT ( COUNT ( ?o ) AS ?t ) ?p WHERE { { ?o property:physically_interacts_with ?p . ?p rdf:type ontology:nutrient . ?o rdf:type ontology:drug } UNION { ?o property:physically_interacts_with ?p . ?p rdf:type ontology:nutrient . ?o rdf:type ontology:nutrient } } GROUP BY ?p } . FILTER ( ?t = 6 ) }
[]
nutrient drug nutrient
SYSTEM
8
Q415287 Q21114332 Q409867 Q21132917 Q21115819 Q21110532 Q21497937 Q424401
(c(Q8386)|c(Q181394),P129,c(Q181394))
action count
action equal
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
value 6
[ANSWER]
[[{'concept': 'Q8386'}, {'concept': 'Q181394'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?p ) AS ?h ) WHERE { { SELECT DISTINCT ( COUNT ( ?o ) AS ?t ) ?p WHERE { { ?o property:P129 ?p . ?p rdf:type ontology:Q181394 . ?o rdf:type ontology:Q8386 } UNION { ?o property:P129 ?p . ?p rdf:type ontology:Q181394 . ?o rdf:type ontology:Q181394 } } GROUP BY ?p } . FILTER ( ?t = 6 ) }
Aromatase Tubulin beta chain Nuclear receptor subfamily 1 group I member 2 Carbonic anhydrase 14 Glutamate receptor ionotropic, NMDA 2C Potassium voltage-gated channel subfamily H member 1 5-hydroxytryptamine receptor 5A Epidermal growth factor receptor
8
action count
action equal
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
value 6
[[{'concept': 'drug'}, {'concept': 'nutrient'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?p ) AS ?h ) WHERE { { SELECT DISTINCT ( COUNT ( ?o ) AS ?t ) ?p WHERE { { ?o property:physically_interacts_with ?p . ?p rdf:type ontology:nutrient . ?o rdf:type ontology:drug } UNION { ?o property:physically_interacts_with ?p . ?p rdf:type ontology:nutrient . ?o rdf:type ontology:nutrient } } GROUP BY ?p } . FILTER ( ?t = 6 ) }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q22264885
P680
Q44424
USER
Which chemical bonds represent molecular function of DNA topoisomerase IV subunit B    NGO1333 ?
(Q22264885,P680,c(Q44424))
action filter_type
action find
entity Q22264885
relation P680
type Q44424
['Q22264885', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?b WHERE { resource:Q22264885 property:P680 ?b . ?b rdf:type ontology:Q44424 }
DNA topoisomerase IV subunit B    NGO1333
action filter_type
action find
entity DNA topoisomerase IV subunit B    NGO1333
relation molecular function
type chemical bond
['DNA topoisomerase IV subunit B    NGO1333', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?b WHERE { resource:DNA_topoisomerase_IV_subunit_B____NGO1333 property:molecular_function ?b . ?b rdf:type ontology:chemical_bond }
[]
chemical bond
Q14860850 Q13667380
SYSTEM
magnesium ion binding, metal ion binding
Q14860850 Q13667380
(Q22264885,P680,c(Q44424))
action filter_type
action find
entity Q22264885
relation P680
type Q44424
[ANSWERS] represent molecular function of DNA topoisomerase IV subunit B NGO1333
['Q22264885', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?b WHERE { resource:Q22264885 property:P680 ?b . ?b rdf:type ontology:Q44424 }
magnesium ion binding metal ion binding
Magnesium ion binding and metal ion binding represent molecular function of DNA topoisomerase IV subunit B NGO1333
magnesium ion binding metal ion binding
action filter_type
action find
entity DNA topoisomerase IV subunit B    NGO1333
relation molecular function
type chemical bond
['DNA topoisomerase IV subunit B    NGO1333', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?b WHERE { resource:DNA_topoisomerase_IV_subunit_B____NGO1333 property:molecular_function ?b . ?b rdf:type ontology:chemical_bond }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q23622306
Q44424
USER
And also tell me about fba    BL0550?
(Q23622306,P680,c(Q44424))
action filter_type
action find
entity Q23622306
relation P680
type Q44424
['Q23622306', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?y WHERE { resource:Q23622306 property:P680 ?y . ?y rdf:type ontology:Q44424 }
fba    BL0550
action filter_type
action find
entity fba    BL0550
relation molecular function
type chemical bond
['fba    BL0550', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?y WHERE { resource:fba____BL0550 property:molecular_function ?y . ?y rdf:type ontology:chemical_bond }
[]
chemical bond
Q13667380 Q14633865
SYSTEM
metal ion binding, zinc ion binding
Q13667380 Q14633865
(Q23622306,P680,c(Q44424))
action filter_type
action find
entity Q23622306
relation P680
type Q44424
[ANSWERS]
['Q23622306', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?y WHERE { resource:Q23622306 property:P680 ?y . ?y rdf:type ontology:Q44424 }
metal ion binding zinc ion binding
metal ion binding zinc ion binding
action filter_type
action find
entity fba    BL0550
relation molecular function
type chemical bond
['fba    BL0550', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?y WHERE { resource:fba____BL0550 property:molecular_function ?y . ?y rdf:type ontology:chemical_bond }
[]
Verification (Boolean) (All)
Verification|one entity, multiple entities (as object) referred indirectly
Q22314295
P680
Q181394
USER
Do precorrin-6x reductase    PP_4832 have those chemical bonds as their molecular function ?
(Q22314295,P680,Q13667380) (Q22314295,P680,Q14633865)
action is_in
entity prev_answer
action find
entity Q22314295
relation P680
['Q22314295', 'P680', 'Q13667380'] ['Q22314295', 'P680', 'Q14633865']
ASK WHERE { resource:Q22314295 property:P680 ?f . VALUES ( ?f ) { ( resource:Q13667380 ) ( resource:Q14633865 ) } }
precorrin-6x reductase    PP_4832
action is_in
entity prev_answer
action find
entity precorrin-6x reductase    PP_4832
relation molecular function
['precorrin-6x reductase    PP_4832', 'molecular function', 'metal ion binding'] ['precorrin-6x reductase    PP_4832', 'molecular function', 'zinc ion binding']
ASK WHERE { resource:precorrin-6x_reductase____PP_4832 property:molecular_function ?f . VALUES ( ?f ) { ( resource:metal_ion_binding ) ( resource:zinc_ion_binding ) } }
[]
nutrient
SYSTEM
NO
(Q22314295,P680,Q13667380) (Q22314295,P680,Q14633865)
action is_in
entity prev_answer
action find
entity Q22314295
relation P680
[ANSWER]
['Q22314295', 'P680', 'Q13667380'] ['Q22314295', 'P680', 'Q14633865']
ASK WHERE { resource:Q22314295 property:P680 ?f . VALUES ( ?f ) { ( resource:Q13667380 ) ( resource:Q14633865 ) } }
No
action is_in
entity prev_answer
action find
entity precorrin-6x reductase    PP_4832
relation molecular function
['precorrin-6x reductase    PP_4832', 'molecular function', 'metal ion binding'] ['precorrin-6x reductase    PP_4832', 'molecular function', 'zinc ion binding']
ASK WHERE { resource:precorrin-6x_reductase____PP_4832 property:molecular_function ?f . VALUES ( ?f ) { ( resource:metal_ion_binding ) ( resource:zinc_ion_binding ) } }
[]
Simple Question (Ellipsis)
Incomplete|object parent is changed, subject and predicate remain same
Q22314295
Q631147
USER
And which infraspecific name?
(Q22314295,P703,c(Q631147))
action filter_type
action find
entity Q22314295
relation P703
type Q631147
['Q22314295', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?b WHERE { resource:Q22314295 property:P703 ?b . ?b rdf:type ontology:Q631147 }
precorrin-6x reductase    PP_4832
action filter_type
action find
entity precorrin-6x reductase    PP_4832
relation found in taxon
type infraspecific name
['precorrin-6x reductase    PP_4832', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?b WHERE { resource:precorrin-6x_reductase____PP_4832 property:found_in_taxon ?b . ?b rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21079489
SYSTEM
Pseudomonas putida KT2440
Q21079489
(Q22314295,P703,c(Q631147))
action filter_type
action find
entity Q22314295
relation P703
type Q631147
[ANSWER]
['Q22314295', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?b WHERE { resource:Q22314295 property:P703 ?b . ?b rdf:type ontology:Q631147 }
Pseudomonas putida KT2440
Pseudomonas putida KT2440
action filter_type
action find
entity precorrin-6x reductase    PP_4832
relation found in taxon
type infraspecific name
['precorrin-6x reductase    PP_4832', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?b WHERE { resource:precorrin-6x_reductase____PP_4832 property:found_in_taxon ?b . ?b rdf:type ontology:infraspecific_name }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q21079489 Q22317806
P703
Q181394
USER
Is 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase    PP_0393 found in the taxon that infraspecific name ?
(Q22317806,P703,Q21079489)
action is_in
entity Q21079489
action find
entity Q22317806
relation P703
['Q22317806', 'P703', 'Q21079489']
ASK WHERE { resource:Q22317806 property:P703 resource:Q21079489 }
Pseudomonas putida KT2440 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase    PP_0393
action is_in
entity Pseudomonas putida KT2440
action find
entity 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase    PP_0393
relation found in taxon
['2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase    PP_0393', 'found in taxon', 'Pseudomonas putida KT2440']
ASK WHERE { resource:2-amino-4-hydroxy-6-hydroxymethyldihydropteridine_pyrophosphokinase____PP_0393 property:found_in_taxon resource:Pseudomonas_putida_KT2440 }
[]
nutrient
SYSTEM
YES
(Q22317806,P703,Q21079489)
action is_in
entity Q21079489
action find
entity Q22317806
relation P703
[ANSWER]
['Q22317806', 'P703', 'Q21079489']
ASK WHERE { resource:Q22317806 property:P703 resource:Q21079489 }
Yes
action is_in
entity Pseudomonas putida KT2440
action find
entity 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase    PP_0393
relation found in taxon
['2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase    PP_0393', 'found in taxon', 'Pseudomonas putida KT2440']
ASK WHERE { resource:2-amino-4-hydroxy-6-hydroxymethyldihydropteridine_pyrophosphokinase____PP_0393 property:found_in_taxon resource:Pseudomonas_putida_KT2440 }
[]