Simple Question (Direct)
Simple Question
Q23472751
P703
Q631147
USER
Which taxon does 50S ribosomal protein L19    Caur_1663 belong to ?
(Q23472751,P703,c(Q631147))
action filter_type
action find
entity Q23472751
relation P703
type Q631147
['Q23472751', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?a WHERE { resource:Q23472751 property:P703 ?a . ?a rdf:type ontology:Q631147 }
50S ribosomal protein L19    Caur_1663
action filter_type
action find
entity 50S ribosomal protein L19    Caur_1663
relation found in taxon
type infraspecific name
['50S ribosomal protein L19    Caur_1663', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?a WHERE { resource:50S_ribosomal_protein_L19____Caur_1663 property:found_in_taxon ?a . ?a rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102955
SYSTEM
Chloroflexus aurantiacus J-10-fl
Q21102955
(Q23472751,P703,c(Q631147))
action filter_type
action find
entity Q23472751
relation P703
type Q631147
50S ribosomal protein L19 Caur_1663 belongs to [ANSWER]
['Q23472751', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?a WHERE { resource:Q23472751 property:P703 ?a . ?a rdf:type ontology:Q631147 }
Chloroflexus aurantiacus J-10-fl
50S ribosomal protein L19 Caur_1663 belongs to Chloroflexus aurantiacus J-10-fl
Chloroflexus aurantiacus J-10-fl
action filter_type
action find
entity 50S ribosomal protein L19    Caur_1663
relation found in taxon
type infraspecific name
['50S ribosomal protein L19    Caur_1663', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?a WHERE { resource:50S_ribosomal_protein_L19____Caur_1663 property:found_in_taxon ?a . ?a rdf:type ontology:infraspecific_name }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23472751
P702
Q863908
USER
What is the gene that encodes that nutrient ?
(Q21102955,P702,c(Q863908))
action filter_type
action find
entity Q23472751
relation P702
type Q863908
['Q21102955', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?c WHERE { resource:Q23472751 property:P702 ?c . ?c rdf:type ontology:Q863908 }
50S ribosomal protein L19    Caur_1663
action filter_type
action find
entity 50S ribosomal protein L19    Caur_1663
relation encoded by
type nucleic acid sequence
['Chloroflexus aurantiacus J-10-fl', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?c WHERE { resource:50S_ribosomal_protein_L19____Caur_1663 property:encoded_by ?c . ?c rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23392589
SYSTEM
50S ribosomal protein L19    Caur_1663
Q23392589
(Q21102955,P702,c(Q863908))
action filter_type
action find
entity Q23472751
relation P702
type Q863908
The gene that encodes that nutrient is 50S ribosomal protein L19 Caur 1663
['Q21102955', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?c WHERE { resource:Q23472751 property:P702 ?c . ?c rdf:type ontology:Q863908 }
50S ribosomal protein L19    Caur_1663
The gene that encodes that nutrient is 50S ribosomal protein L19 Caur 1663
50S ribosomal protein L19    Caur_1663
action filter_type
action find
entity 50S ribosomal protein L19    Caur_1663
relation encoded by
type nucleic acid sequence
['Chloroflexus aurantiacus J-10-fl', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?c WHERE { resource:50S_ribosomal_protein_L19____Caur_1663 property:encoded_by ?c . ?c rdf:type ontology:nucleic_acid_sequence }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type|Indirect
P688
Q181394
USER
How many nutrients are that nucleic acid sequence an encoding of ?
(Q23392589,P688,c(Q181394))
action count
action filter_type
action find
entity Q23392589
relation P688
type Q181394
['Q23392589', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?l ) AS ?m ) WHERE { resource:Q23392589 property:P688 ?l . ?l rdf:type ontology:Q181394 }
action count
action filter_type
action find
entity 50S ribosomal protein L19    Caur_1663
relation encodes
type nutrient
['50S ribosomal protein L19    Caur_1663', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?l ) AS ?m ) WHERE { resource:50S_ribosomal_protein_L19____Caur_1663 property:encodes ?l . ?l rdf:type ontology:nutrient }
[]
nutrient
SYSTEM
1
Q23472751
(Q23392589,P688,c(Q181394))
action count
action filter_type
action find
entity Q23392589
relation P688
type Q181394
[ANSWER]
['Q23392589', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?l ) AS ?m ) WHERE { resource:Q23392589 property:P688 ?l . ?l rdf:type ontology:Q181394 }
50S ribosomal protein L19    Caur_1663
1
action count
action filter_type
action find
entity 50S ribosomal protein L19    Caur_1663
relation encodes
type nutrient
['50S ribosomal protein L19    Caur_1663', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?l ) AS ?m ) WHERE { resource:50S_ribosomal_protein_L19____Caur_1663 property:encodes ?l . ?l rdf:type ontology:nutrient }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q27550226 Q23472751
P681
Q5058355
USER
Which cellular components are the cell components of 50S ribosomal protein L19    Caur_1663 or glycerol-3-phosphate dehydrogenase (NAD(+)) GPD1 YDL022W ?
OR((Q23472751,P681,c(Q5058355)), (Q27550226,P681,c(Q5058355)))
action filter_type
action union
action find
entity Q23472751
relation P681
action find
entity Q27550226
relation P681
type Q5058355
{'OR': [['Q23472751', 'P681', {'concept': 'Q5058355'}], ['Q27550226', 'P681', {'concept': 'Q5058355'}]]}
SELECT DISTINCT ?k WHERE { { { resource:Q27550226 property:P681 ?k } UNION { resource:Q23472751 property:P681 ?k } } . ?k rdf:type ontology:Q5058355 }
glycerol-3-phosphate dehydrogenase (NAD(+)) GPD1 YDL022W 50S ribosomal protein L19    Caur_1663
action filter_type
action union
action find
entity 50S ribosomal protein L19    Caur_1663
relation cell component
action find
entity glycerol-3-phosphate dehydrogenase (NAD(+)) GPD1 YDL022W
relation cell component
type cellular component
{'OR': [['50S ribosomal protein L19    Caur_1663', 'cell component', {'concept': 'cellular component'}], ['glycerol-3-phosphate dehydrogenase (NAD(+)) GPD1 YDL022W', 'cell component', {'concept': 'cellular component'}]]}
SELECT DISTINCT ?k WHERE { { { resource:glycerol-3-phosphate_dehydrogenase_(NAD(+))_GPD1_YDL022W property:cell_component ?k } UNION { resource:50S_ribosomal_protein_L19____Caur_1663 property:cell_component ?k } } . ?k rdf:type ontology:cellular_component }
[]
cellular component
Q138639 Q3824358
SYSTEM
peroxisome, intracellular
Q138639 Q3824358
OR((Q23472751,P681,c(Q5058355)), (Q27550226,P681,c(Q5058355)))
action filter_type
action union
action find
entity Q23472751
relation P681
action find
entity Q27550226
relation P681
type Q5058355
[ANSWERS] are the cell components of 50S ribosomal protein L19 Caur_1663 or glycerol-3-phosphate dehydrogenase (NAD(+)) GPD1 YDL022W
{'OR': [['Q23472751', 'P681', {'concept': 'Q5058355'}], ['Q27550226', 'P681', {'concept': 'Q5058355'}]]}
SELECT DISTINCT ?k WHERE { { { resource:Q27550226 property:P681 ?k } UNION { resource:Q23472751 property:P681 ?k } } . ?k rdf:type ontology:Q5058355 }
peroxisome intracellular
Peroxisome and intracellular are the cell components of 50S ribosomal protein L19 Caur_1663 or glycerol-3-phosphate dehydrogenase (NAD(+)) GPD1 YDL022W
peroxisome intracellular
action filter_type
action union
action find
entity 50S ribosomal protein L19    Caur_1663
relation cell component
action find
entity glycerol-3-phosphate dehydrogenase (NAD(+)) GPD1 YDL022W
relation cell component
type cellular component
{'OR': [['50S ribosomal protein L19    Caur_1663', 'cell component', {'concept': 'cellular component'}], ['glycerol-3-phosphate dehydrogenase (NAD(+)) GPD1 YDL022W', 'cell component', {'concept': 'cellular component'}]]}
SELECT DISTINCT ?k WHERE { { { resource:glycerol-3-phosphate_dehydrogenase_(NAD(+))_GPD1_YDL022W property:cell_component ?k } UNION { resource:50S_ribosomal_protein_L19____Caur_1663 property:cell_component ?k } } . ?k rdf:type ontology:cellular_component }
[]
Verification (Boolean) (All)
Verification|one entity, multiple entities (as object) referred indirectly
Q27746771
P681
Q181394
USER
Are those ones a cell component of aminotransferase    MSMEG_0688 ?
(Q27746771,P681,Q138639) (Q27746771,P681,Q3824358)
action is_in
entity prev_answer
action find
entity Q27746771
relation P681
['Q27746771', 'P681', 'Q138639'] ['Q27746771', 'P681', 'Q3824358']
ASK WHERE { resource:Q27746771 property:P681 ?k . VALUES ( ?k ) { ( resource:Q138639 ) ( resource:Q3824358 ) } }
aminotransferase    MSMEG_0688
action is_in
entity prev_answer
action find
entity aminotransferase    MSMEG_0688
relation cell component
['aminotransferase    MSMEG_0688', 'cell component', 'peroxisome'] ['aminotransferase    MSMEG_0688', 'cell component', 'intracellular']
ASK WHERE { resource:aminotransferase____MSMEG_0688 property:cell_component ?k . VALUES ( ?k ) { ( resource:peroxisome ) ( resource:intracellular ) } }
[]
nutrient
SYSTEM
NO
(Q27746771,P681,Q138639) (Q27746771,P681,Q3824358)
action is_in
entity prev_answer
action find
entity Q27746771
relation P681
[ANSWER]
['Q27746771', 'P681', 'Q138639'] ['Q27746771', 'P681', 'Q3824358']
ASK WHERE { resource:Q27746771 property:P681 ?k . VALUES ( ?k ) { ( resource:Q138639 ) ( resource:Q3824358 ) } }
No
action is_in
entity prev_answer
action find
entity aminotransferase    MSMEG_0688
relation cell component
['aminotransferase    MSMEG_0688', 'cell component', 'peroxisome'] ['aminotransferase    MSMEG_0688', 'cell component', 'intracellular']
ASK WHERE { resource:aminotransferase____MSMEG_0688 property:cell_component ?k . VALUES ( ?k ) { ( resource:peroxisome ) ( resource:intracellular ) } }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Mult. entity type
Q22329844
P361
Q5058355 Q15989253 Q5058355
USER
How many cellular components are parts of approximately the same number of cellular components or parts as viral intermediate capsid ?
(c(Q5058355),P361,c(Q5058355)|c(Q15989253))
action count
action approx
action union
action find_tuple_counts
relation P361
type Q5058355
type Q5058355
action find_tuple_counts
relation P361
type Q5058355
type Q15989253
action count
action filter_multi_types
action find
entity Q22329844
relation P361
type Q5058355
type Q15989253
[{'concept': 'Q5058355'}, 'P361', [{'concept': 'Q5058355'}, {'concept': 'Q15989253'}]]
SELECT DISTINCT ( COUNT ( ?v ) AS ?o ) WHERE { { SELECT DISTINCT ( COUNT ( ?i ) AS ?l ) ?v WHERE { ?i rdf:type ?s . VALUES ( ?s ) { ( ontology:Q5058355 ) ( ontology:Q15989253 ) } } GROUP BY ?v } . { SELECT DISTINCT ( COUNT ( ?g ) AS ?j ) WHERE { { VALUES ( ?c ) { ( ontology:Q5058355 ) ( ontology:Q15989253 ) } . ?g rdf:type ?c } . resource:Q22329844 property:P361 ?g } } . FILTER ( ?l = ?j ) }
viral intermediate capsid
action count
action approx
action union
action find_tuple_counts
relation part of
type cellular component
type cellular component
action find_tuple_counts
relation part of
type cellular component
type part
action count
action filter_multi_types
action find
entity viral intermediate capsid
relation part of
type cellular component
type part
[{'concept': 'cellular component'}, 'part of', [{'concept': 'cellular component'}, {'concept': 'part'}]]
SELECT DISTINCT ( COUNT ( ?v ) AS ?o ) WHERE { { SELECT DISTINCT ( COUNT ( ?i ) AS ?l ) ?v WHERE { ?i rdf:type ?s . VALUES ( ?s ) { ( ontology:cellular_component ) ( ontology:part ) } } GROUP BY ?v } . { SELECT DISTINCT ( COUNT ( ?g ) AS ?j ) WHERE { { VALUES ( ?c ) { ( ontology:cellular_component ) ( ontology:part ) } . ?g rdf:type ?c } . resource:viral_intermediate_capsid property:part_of ?g } } . FILTER ( ?l = ?j ) }
[]
cellular component part cellular component
SYSTEM
58
Q22327392 Q22328737 Q21108229 Q22327015 Q22327805 Q14864978 Q14864971 Q22327396 Q24570686 Q21172343 Q21172341 Q22326870 Q22327043 Q22326188 Q22326831 Q14877465 Q22327676 Q22326089 Q22327469 Q24576579 Q21095183 Q14905221 Q22327389 Q21105647 Q21106212 Q22326799 Q22328904 Q22329850 Q26253851 Q22327397 Q22327525 Q22327526 Q22329848 Q22329843 Q22329844 Q22329845 Q22329846 Q24570682 Q14911512 Q24570689 Q22327468 Q22327803 Q24576582 Q22329409 Q22326951 Q22328762 Q22327083 Q22328801 Q22330049 Q22325454 Q21097505 Q16949578 Q22327686 Q22327108 Q22329467 Q22327341 Q6414172 Q22327736
(c(Q5058355),P361,c(Q5058355)|c(Q15989253))
action count
action approx
action union
action find_tuple_counts
relation P361
type Q5058355
type Q5058355
action find_tuple_counts
relation P361
type Q5058355
type Q15989253
action count
action filter_multi_types
action find
entity Q22329844
relation P361
type Q5058355
type Q15989253
[ANSWER]
[{'concept': 'Q5058355'}, 'P361', [{'concept': 'Q5058355'}, {'concept': 'Q15989253'}]]
SELECT DISTINCT ( COUNT ( ?v ) AS ?o ) WHERE { { SELECT DISTINCT ( COUNT ( ?i ) AS ?l ) ?v WHERE { ?i rdf:type ?s . VALUES ( ?s ) { ( ontology:Q5058355 ) ( ontology:Q15989253 ) } } GROUP BY ?v } . { SELECT DISTINCT ( COUNT ( ?g ) AS ?j ) WHERE { { VALUES ( ?c ) { ( ontology:Q5058355 ) ( ontology:Q15989253 ) } . ?g rdf:type ?c } . resource:Q22329844 property:P361 ?g } } . FILTER ( ?l = ?j ) }
symbiont-containing vacuolar space iron-sulfur cluster assembly complex subapical complex photosystem II oxygen evolving complex photosynthetic membrane lipopolysaccharide receptor complex succinate dehydrogenase complex scaffoldin complex extrinsic component of presynaptic membrane inner dense plaque of desmosome outer dense plaque of desmosome DAPK1-calmodulin complex plasma membrane-derived thylakoid ribulose bisphosphate carboxylase complex aster nuclear membrane part receptor complex plasma membrane-derived thylakoid membrane contractile fiber part female germline ring canal inner rim intrinsic component of presynaptic membrane dendritic spine head symbiont-containing vacuole membrane host cell part transmembrane transporter complex GPI-anchor transamidase complex alpha-1,6-mannosyltransferase complex dosage compensation complex icosahedral viral capsid, spike integral component of spine apparatus membrane extracellular exosome complex cytoplasmic side of dendritic spine plasma membrane subsynaptic reticulum icosahedral viral capsid, collar viral outer capsid viral intermediate capsid viral inner capsid icosahedral viral capsid, neck spine apparatus membrane stereocilium extrinsic component of postsynaptic membrane female germline ring canal outer rim nuclear membrane complex Bqt3-Bqt4 intrinsic component of postsynaptic membrane extracellular core region of desmosome oxidoreductase complex Dxr protein complex PTEN phosphatase complex TRAPPI protein complex eif4e-cup complex curli dendritic spine neck Autapse prospore membrane mitochondrial membrane part bacterial-type flagellum part plasma membrane-derived thylakoid photosystem II kinocilium chaperone-mediated autophagy translocation complex
58
action count
action approx
action union
action find_tuple_counts
relation part of
type cellular component
type cellular component
action find_tuple_counts
relation part of
type cellular component
type part
action count
action filter_multi_types
action find
entity viral intermediate capsid
relation part of
type cellular component
type part
[{'concept': 'cellular component'}, 'part of', [{'concept': 'cellular component'}, {'concept': 'part'}]]
SELECT DISTINCT ( COUNT ( ?v ) AS ?o ) WHERE { { SELECT DISTINCT ( COUNT ( ?i ) AS ?l ) ?v WHERE { ?i rdf:type ?s . VALUES ( ?s ) { ( ontology:cellular_component ) ( ontology:part ) } } GROUP BY ?v } . { SELECT DISTINCT ( COUNT ( ?g ) AS ?j ) WHERE { { VALUES ( ?c ) { ( ontology:cellular_component ) ( ontology:part ) } . ?g rdf:type ?c } . resource:viral_intermediate_capsid property:part_of ?g } } . FILTER ( ?l = ?j ) }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Mult. entity type|Incomplete
Q22327403
P361
Q5058355 Q15989253 Q5058355
USER
And also tell me about PTEX complex?
(c(Q5058355),P361,c(Q5058355)|c(Q15989253))
action count
action approx
action union
action find_tuple_counts
relation P361
type Q5058355
type Q5058355
action find_tuple_counts
relation P361
type Q5058355
type Q15989253
action count
action filter_multi_types
action find
entity Q22327403
relation P361
type Q5058355
type Q15989253
[{'concept': 'Q5058355'}, 'P361', [{'concept': 'Q5058355'}, {'concept': 'Q15989253'}]]
SELECT DISTINCT ( COUNT ( ?t ) AS ?k ) WHERE { { SELECT DISTINCT ?t ( COUNT ( ?g ) AS ?j ) WHERE { VALUES ( ?i ) { ( ontology:Q5058355 ) ( ontology:Q15989253 ) } . ?g rdf:type ?i } GROUP BY ?t } . { SELECT DISTINCT ( COUNT ( ?v ) AS ?l ) WHERE { resource:Q22327403 property:P361 ?v . { { ?v rdf:type ontology:Q15989253 } UNION { ?v rdf:type ontology:Q5058355 } } } } . FILTER ( ?j = ?l ) }
PTEX complex
action count
action approx
action union
action find_tuple_counts
relation part of
type cellular component
type cellular component
action find_tuple_counts
relation part of
type cellular component
type part
action count
action filter_multi_types
action find
entity PTEX complex
relation part of
type cellular component
type part
[{'concept': 'cellular component'}, 'part of', [{'concept': 'cellular component'}, {'concept': 'part'}]]
SELECT DISTINCT ( COUNT ( ?t ) AS ?k ) WHERE { { SELECT DISTINCT ?t ( COUNT ( ?g ) AS ?j ) WHERE { VALUES ( ?i ) { ( ontology:cellular_component ) ( ontology:part ) } . ?g rdf:type ?i } GROUP BY ?t } . { SELECT DISTINCT ( COUNT ( ?v ) AS ?l ) WHERE { resource:PTEX_complex property:part_of ?v . { { ?v rdf:type ontology:part } UNION { ?v rdf:type ontology:cellular_component } } } } . FILTER ( ?j = ?l ) }
[]
cellular component part cellular component
SYSTEM
152
Q22327293 Q14329032 Q22327448 Q21116315 Q14912978 Q14876131 Q14878067 Q22327403 Q14864977 Q22327994 Q22327995 Q22326356 Q22327622 Q22327623 Q22327621 Q21116899 Q14860843 Q22327688 Q22327479 Q22327475 Q22327687 Q22327473 Q22329449 Q22327447 Q26253880 Q24576568 Q24576567 Q22330482 Q22325973 Q671136 Q22326873 Q21469807 Q22325381 Q24576572 Q22327513 Q22325480 Q21120634 Q3824358 Q22329021 Q21120639 Q14914004 Q22328085 Q22328655 Q22329861 Q22329866 Q22329864 Q22330033 Q22328495 Q22326802 Q22329161 Q22329160 Q22327284 Q22330462 Q22327411 Q22327413 Q22327412 Q22327419 Q15320191 Q22329158 Q21109092 Q14864382 Q22329157 Q22329857 Q22329856 Q22329855 Q22329854 Q22329852 Q24570696 Q22326943 Q21136996 Q22329858 Q14906187 Q22327494 Q22327529 Q22327407 Q22328035 Q22327654 Q22327653 Q22329249 Q22327524 Q22329849 Q22329847 Q21971414 Q21095089 Q22327498 Q22330052 Q22330059 Q22327493 Q22327061 Q22325375 Q24576587 Q21108411 Q22325981 Q21104759 Q21484280 Q22329402 Q24570673 Q22328769 Q14877492 Q22328074 Q22328884 Q14873267 Q22329076 Q14901717 Q22330234 Q22330236 Q22330238 Q14819441 Q21108403 Q14330626 Q22328839 Q2914458 Q24576590 Q24576591 Q21105674 Q22327509 Q21468808 Q14863683 Q22327505 Q22327502 Q22327501 Q22327500 Q24570705 Q14864390 Q14330629 Q21971286 Q21105988 Q21095308 Q22330225 Q22326845 Q22326843 Q79927 Q14876059 Q22327647 Q22327510 Q22327511 Q21112489 Q22327517 Q22329403 Q26253890 Q22328584 Q22327343 Q22327474 Q14860540 Q1640852 Q22327421 Q21115425 Q22328601 Q22327390 Q21095620 Q193825 Q22327423
(c(Q5058355),P361,c(Q5058355)|c(Q15989253))
action count
action approx
action union
action find_tuple_counts
relation P361
type Q5058355
type Q5058355
action find_tuple_counts
relation P361
type Q5058355
type Q15989253
action count
action filter_multi_types
action find
entity Q22327403
relation P361
type Q5058355
type Q15989253
[ANSWER]
[{'concept': 'Q5058355'}, 'P361', [{'concept': 'Q5058355'}, {'concept': 'Q15989253'}]]
SELECT DISTINCT ( COUNT ( ?t ) AS ?k ) WHERE { { SELECT DISTINCT ?t ( COUNT ( ?g ) AS ?j ) WHERE { VALUES ( ?i ) { ( ontology:Q5058355 ) ( ontology:Q15989253 ) } . ?g rdf:type ?i } GROUP BY ?t } . { SELECT DISTINCT ( COUNT ( ?v ) AS ?l ) WHERE { resource:Q22327403 property:P361 ?v . { { ?v rdf:type ontology:Q15989253 } UNION { ?v rdf:type ontology:Q5058355 } } } } . FILTER ( ?j = ?l ) }
ciliary part endoplasmic reticulum membrane interleukin-35 complex viral nucleocapsid mitochondrial nucleoid compact myelin organelle membrane PTEX complex plasma membrane part rhoptry rhoptry membrane membrane protein complex side of membrane lumenal side of membrane leaflet of membrane bilayer complement component C1 complex nuclear outer membrane prospore membrane leading edge presynapse postsynapse prospore membrane spindle pole body attachment site intrinsic component of organelle membrane lateral shield interleukin-27 complex extrinsic component of postsynaptic endosome membrane extracellular matrix of synaptic cleft perisynaptic extracellular matrix ventral disc supernumerary microtubule array larval serum protein complex synaptic vesicle cell division site part dolichyl-phosphate-mannose-protein mannosyltransferase complex HU-DNA complex presynaptic endosome membrane postsynaptic specialization extracellular matrix component interleukin-12 complex intracellular apical complex interleukin-23 complex synaptic membrane external encapsulating structure cell septum part viral capsid, decoration virus tail, major subunit virus tail, minor subunit capsomere spitzenkorper endoplasmic reticulum palmitoyltransferase complex ventral disc lateral crest ventral disc overlap zone cell projection part longitudinal side of cell surface extracellular space of host extrahaustorial matrix extra-invasive hyphal space inhibin complex synaptic cleft ventral disc dorsal microribbon nuclear outer membrane-endoplasmic reticulum membrane network presynaptic active zone ventral disc crossbridge virus tail, fiber virus tail, baseplate virus tail, tube virus tail, sheath virus tail, shaft extrinsic component of spine apparatus membrane fatty acid elongase complex immunoglobulin complex, circulating virus tail, tip CRLF-CLCF1 complex postsynaptic endosome presynaptic grid activin complex organelle lumen annulate lamellae membrane region virion nucleoid presynaptic active zone dense projection icosahedral viral capsid, collar fiber icosahedral viral capsid, neck fiber plasma lipoprotein particle blood microparticle postsynaptic endocytic zone dinoflagellate antapex cell surface furrow extrinsic component of synaptic vesicle membrane extracellular isoamylase complex IHF-DNA complex intrinsic component of postsynaptic endosome membrane CNTFR-CLCF1 complex classical-complement-pathway C3/C5 convertase complex perinuclear endoplasmic reticulum membrane retromer, cargo-selective complex inner membrane complex postsynaptic endosome membrane viral portal complex lateral loop rhoptry lumen organellar ribosome cell-cell junction plastid nucleoid intracellular part basal ring of apical complex dinoflagellate apex polar ring of apical complex fibrinogen complex synaptic vesicle lumen myelin sheath abaxonal region viral scaffold extracellular space intrinsic component of presynaptic endosome membrane intrinsic component of spine apparatus membrane Nem1-Spo7 phosphatase complex postsynaptic cytosol retromer, tubulation complex insulin-like growth factor binding protein complex presynaptic endosome presynaptic active zone cytoplasmic component presynaptic endocytic zone cytoplasmic component presynaptic endocytic zone postsynaptic endocytic zone cytoplasmic component synaptic vesicle membrane myelin sheath adaxonal region oligosaccharyltransferase complex stereocilium membrane retromer complex rhoptry neck intracellular organelle part Dsc E3 ubiquitin ligase complex endoplasmic reticulum phosphatidylinositol 3-kinase complex external encapsulating structure part presynaptic cytosol postsynaptic cytoskeleton stereocilium tip presynaptic cytoskeleton basal labyrinth extrinsic component of presynaptic endosome membrane Kibra-Ex-Mer complex plasma membrane-derived photosystem I intrinsic component of synaptic vesicle membrane clathrin-coated pit Schmidt-Lanterman incisure bursicon neuropeptide hormone complex Ire1 complex H-NS complex symbiont-containing vacuolar membrane network Flemming body extracellular matrix extracellular organelle
152
action count
action approx
action union
action find_tuple_counts
relation part of
type cellular component
type cellular component
action find_tuple_counts
relation part of
type cellular component
type part
action count
action filter_multi_types
action find
entity PTEX complex
relation part of
type cellular component
type part
[{'concept': 'cellular component'}, 'part of', [{'concept': 'cellular component'}, {'concept': 'part'}]]
SELECT DISTINCT ( COUNT ( ?t ) AS ?k ) WHERE { { SELECT DISTINCT ?t ( COUNT ( ?g ) AS ?j ) WHERE { VALUES ( ?i ) { ( ontology:cellular_component ) ( ontology:part ) } . ?g rdf:type ?i } GROUP BY ?t } . { SELECT DISTINCT ( COUNT ( ?v ) AS ?l ) WHERE { resource:PTEX_complex property:part_of ?v . { { ?v rdf:type ontology:part } UNION { ?v rdf:type ontology:cellular_component } } } } . FILTER ( ?j = ?l ) }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q514801 Q138639
P1050
Q2057971
USER
Which health problems have peroxisome or Barbara Lea contracted ?
OR((Q138639,P1050,c(Q2057971)), (Q514801,P1050,c(Q2057971)))
action filter_type
action union
action find
entity Q138639
relation P1050
action find
entity Q514801
relation P1050
type Q2057971
{'OR': [['Q138639', 'P1050', {'concept': 'Q2057971'}], ['Q514801', 'P1050', {'concept': 'Q2057971'}]]}
SELECT DISTINCT ?h WHERE { { { resource:Q514801 property:P1050 ?h } UNION { resource:Q138639 property:P1050 ?h } } . ?h rdf:type ontology:Q2057971 }
Barbara Lea peroxisome
action filter_type
action union
action find
entity peroxisome
relation medical condition
action find
entity Barbara Lea
relation medical condition
type health problem
{'OR': [['peroxisome', 'medical condition', {'concept': 'health problem'}], ['Barbara Lea', 'medical condition', {'concept': 'health problem'}]]}
SELECT DISTINCT ?h WHERE { { { resource:Barbara_Lea property:medical_condition ?h } UNION { resource:peroxisome property:medical_condition ?h } } . ?h rdf:type ontology:health_problem }
[]
health problem
Q11081 Q3281322
SYSTEM
Alzheimer's disease, peroxisomal disease
Q11081 Q3281322
OR((Q138639,P1050,c(Q2057971)), (Q514801,P1050,c(Q2057971)))
action filter_type
action union
action find
entity Q138639
relation P1050
action find
entity Q514801
relation P1050
type Q2057971
[ANSWERS] have peroxisome or Barbara Lea contracted
{'OR': [['Q138639', 'P1050', {'concept': 'Q2057971'}], ['Q514801', 'P1050', {'concept': 'Q2057971'}]]}
SELECT DISTINCT ?h WHERE { { { resource:Q514801 property:P1050 ?h } UNION { resource:Q138639 property:P1050 ?h } } . ?h rdf:type ontology:Q2057971 }
Alzheimer's disease peroxisomal disease
Alzheimer's disease and peroxisomal disease have peroxisome or Barbara Lea contracted
Alzheimer's disease peroxisomal disease
action filter_type
action union
action find
entity peroxisome
relation medical condition
action find
entity Barbara Lea
relation medical condition
type health problem
{'OR': [['peroxisome', 'medical condition', {'concept': 'health problem'}], ['Barbara Lea', 'medical condition', {'concept': 'health problem'}]]}
SELECT DISTINCT ?h WHERE { { { resource:Barbara_Lea property:medical_condition ?h } UNION { resource:peroxisome property:medical_condition ?h } } . ?h rdf:type ontology:health_problem }
[]
Clarification
Simple Question|Single Entity|Indirect
Q3281322
P2176
Q8386
USER
Which drug is used for treating that health problem ?
(Q3281322,P2176,c(Q8386))
action filter_type
action find
entity Q3281322
relation P2176
type Q8386
['Q3281322', 'P2176', {'concept': 'Q8386'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:Q8386 . resource:Q3281322 property:P2176 ?b }
peroxisomal disease
action filter_type
action find
entity peroxisomal disease
relation drug used for treatment
type drug
['peroxisomal disease', 'drug used for treatment', {'concept': 'drug'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:drug . resource:peroxisomal_disease property:drug_used_for_treatment ?b }
[]
drug
Clarification for simple ques.
Q3281322
SYSTEM
Did you mean peroxisomal disease ?
Q11081 Q3281322
(Q11081,P2176,c(Q8386)) (Q3281322,P2176,c(Q8386))
[ANSWER]
['Q11081', 'P2176', {'concept': 'Q8386'}] ['Q3281322', 'P2176', {'concept': 'Q8386'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:Q8386 . resource:Q3281322 property:P2176 ?b }
Alzheimer's disease peroxisomal disease
Did you mean peroxisomal disease ?
peroxisomal disease
["Alzheimer's disease", 'drug used for treatment', {'concept': 'drug'}] ['peroxisomal disease', 'drug used for treatment', {'concept': 'drug'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:drug . resource:peroxisomal_disease property:drug_used_for_treatment ?b }
[]
Simple Question (Coreferenced)
USER
Yes
(Q3281322,P2176,c(Q8386))
['Q3281322', 'P2176', {'concept': 'Q8386'}]
['peroxisomal disease', 'drug used for treatment', {'concept': 'drug'}]
[]
Q287415
SYSTEM
cholic acid
Q287415
(Q3281322,P2176,c(Q8386))
action filter_type
action find
entity Q3281322
relation P2176
type Q8386
And [ANSWER] is used for treating that health problem
['Q3281322', 'P2176', {'concept': 'Q8386'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:Q8386 . resource:Q3281322 property:P2176 ?b }
cholic acid
And cholic acid is used for treating that health problem
cholic acid
action filter_type
action find
entity peroxisomal disease
relation drug used for treatment
type drug
['peroxisomal disease', 'drug used for treatment', {'concept': 'drug'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:drug . resource:peroxisomal_disease property:drug_used_for_treatment ?b }
[]
Logical Reasoning (All)
Logical|Union|Multiple_Relation
Q18253868 Q11081
P2293 P684
Q863908
USER
Which nucleic acid sequences have hereditary association with Alzheimer's disease or are an orthologous gene for Rps6ka2 ?
OR((Q11081,P2293,c(Q863908)), (Q18253868,P684,c(Q863908)))
action filter_type
action union
action find
entity Q11081
relation P2293
action find
entity Q18253868
relation P684
type Q863908
{'OR': [['Q11081', 'P2293', {'concept': 'Q863908'}], ['Q18253868', 'P684', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?u WHERE { { { resource:Q18253868 property:P684 ?u } UNION { resource:Q11081 property:P2293 ?u } } . ?u rdf:type ontology:Q863908 }
Rps6ka2 Alzheimer's disease
action filter_type
action union
action find
entity Alzheimer's disease
relation genetic association
action find
entity Rps6ka2
relation ortholog
type nucleic acid sequence
{'OR': [["Alzheimer's disease", 'genetic association', {'concept': 'nucleic acid sequence'}], ['Rps6ka2', 'ortholog', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?u WHERE { { { resource:Rps6ka2 property:ortholog ?u } UNION { resource:Alzheimer's_disease property:genetic_association ?u } } . ?u rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q17913823 Q18053558 Q18049453 Q18033761 Q18029240 Q17815635 Q17855637 Q18038784 Q18053055 Q18037783
SYSTEM
Some of them are DMXL1, ATXN7L1, ANO4, MPZL1, MOBP, AP2A2, CAMK4, PCDH11X, PLPP4, MTHFD1L
Q18033279 Q18037003 Q17858733 Q18052271 Q18037479 Q18035316 Q18046267 Q18043072 Q18052848 Q18042514 Q18039650 Q18035395 Q18039883 Q17855637 Q17913823 Q18045682 Q18038784 Q2745322 Q18034002 Q18033761 Q18051063 Q18037897 Q17825605 Q18034601 Q18034725 Q18043155 Q18037783 Q18046433 Q14890468 Q18046244 Q18053558 Q18041790 Q18047843 Q18036702 Q17927283 Q18050688 Q18036665 Q5009814 Q18029240 Q18041957 Q18031287 Q18049453 Q18041263 Q14914401 Q18045297 Q18027947 Q18052870 Q18035581 Q18035998 Q18040973 Q18041516 Q18041288 Q414043 Q18046351 Q18047620 Q14864935 Q14904550 Q7392091 Q18025177 Q18052537 Q18036639 Q18053055 Q20787111 Q18036632 Q18033497 Q14864533 Q18055569 Q17815635 Q18055234 Q18042877 Q18030967 Q18044426 Q18034330 Q18027694 Q18032340 Q18055896 Q18062755 Q18029171 Q14907382 Q14819361 Q18033531 Q18036616 Q18046296 Q18035011 Q18032804 Q17911558 Q18032924
OR((Q11081,P2293,c(Q863908)), (Q18253868,P684,c(Q863908)))
action filter_type
action union
action find
entity Q11081
relation P2293
action find
entity Q18253868
relation P684
type Q863908
[ANSWERS] have hereditary association with Alzheimer's disease or are an orthologous gene for Rps6ka2
{'OR': [['Q11081', 'P2293', {'concept': 'Q863908'}], ['Q18253868', 'P684', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?u WHERE { { { resource:Q18253868 property:P684 ?u } UNION { resource:Q11081 property:P2293 ?u } } . ?u rdf:type ontology:Q863908 }
CRADD PRRC2C MS4A3 NKAIN2 CD2AP ABCA7 SAP30L PLEKHG1 BMPER FMN2 PARVB TOMM40 CDON CAMK4 DMXL1 CSMD1 PCDH11X STK11 TRIP4 MPZL1 MPP7 CNTNAP2 BIN1 ST18 ELMO1 ARHGAP20 MTHFD1L CCDC134 APOE PPP1R3B ATXN7L1 STK32B SPPL2A HECW1 PTK2B NDUFAF6 MYO16 CD33 MOBP LIMS2 RPS6KA2 ANO4 DCHS2 GAB2 EXOC4 INPP5D GLIS3 CELF1 FERMT2 TREM2 ZCWPW1 BCAS3 RELN CLMN MEGF10 CLU APOC1 SORL1 GABRG3 ZNF320 PCNX1 PLPP4 LOC390956 DIP2C SQSTM1 CR1 TGM6 AP2A2 LUZP2 CASS4 NECTIN2 VAT1L SLC4A8 IGH VSNL1 POLN SLC8A1-AS1 AFF1 NCS1 CYCS CACNA1G SLC4A1AP ANKRD55 GPC6 PICALM CTNNA2 STK24
DMXL1, ATXN7L1, ANO4, MPZL1, MOBP, AP2A2, CAMK4, PCDH11X, PLPP4 and MTHFD1L have hereditary association with Alzheimer's disease or are an orthologous gene for Rps6ka2
DMXL1 ATXN7L1 ANO4 MPZL1 MOBP AP2A2 CAMK4 PCDH11X PLPP4 MTHFD1L
action filter_type
action union
action find
entity Alzheimer's disease
relation genetic association
action find
entity Rps6ka2
relation ortholog
type nucleic acid sequence
{'OR': [["Alzheimer's disease", 'genetic association', {'concept': 'nucleic acid sequence'}], ['Rps6ka2', 'ortholog', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?u WHERE { { { resource:Rps6ka2 property:ortholog ?u } UNION { resource:Alzheimer's_disease property:genetic_association ?u } } . ?u rdf:type ontology:nucleic_acid_sequence }
[]