Simple Question (Direct)
Simple Question
Q23526219
P682
Q1057
USER
Which metabolic process is membrane-associated histidine kinase    CA_C3516 involved in ?
(Q23526219,P682,c(Q1057))
action filter_type
action find
entity Q23526219
relation P682
type Q1057
['Q23526219', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:Q1057 . resource:Q23526219 property:P682 ?b }
membrane-associated histidine kinase    CA_C3516
action filter_type
action find
entity membrane-associated histidine kinase    CA_C3516
relation biological process
type metabolic process
['membrane-associated histidine kinase    CA_C3516', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:metabolic_process . resource:membrane-associated_histidine_kinase____CA_C3516 property:biological_process ?b }
[]
metabolic process
Q14863351
SYSTEM
signal transduction by protein phosphorylation
Q14863351
(Q23526219,P682,c(Q1057))
action filter_type
action find
entity Q23526219
relation P682
type Q1057
The [ANSWER] is membrane-associated histidine kinase CA_C3516 involved in
['Q23526219', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:Q1057 . resource:Q23526219 property:P682 ?b }
signal transduction by protein phosphorylation
The signal transduction by protein phosphorylation is membrane-associated histidine kinase CA_C3516 involved in
signal transduction by protein phosphorylation
action filter_type
action find
entity membrane-associated histidine kinase    CA_C3516
relation biological process
type metabolic process
['membrane-associated histidine kinase    CA_C3516', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:metabolic_process . resource:membrane-associated_histidine_kinase____CA_C3516 property:biological_process ?b }
[]
Logical Reasoning (All)
Logical|Intersection|Multiple_Relation
Q21102973 Q23526219
P703 P688
Q863908
USER
Which nucleic acid sequences encodes membrane-associated histidine kinase    CA_C3516 and are found in the taxon Clostridium acetobutylicum ATCC 824 ?
AND((c(Q863908),P688,Q23526219), (c(Q863908),P703,Q21102973))
action filter_type
action intersection
action find_reverse
entity Q23526219
relation P688
action find_reverse
entity Q21102973
relation P703
type Q863908
{'AND': [[{'concept': 'Q863908'}, 'P688', 'Q23526219'], [{'concept': 'Q863908'}, 'P703', 'Q21102973']]}
SELECT DISTINCT ?w WHERE { ?w property:P688 resource:Q23526219 . ?w property:P703 resource:Q21102973 . ?w rdf:type ontology:Q863908 }
Clostridium acetobutylicum ATCC 824 membrane-associated histidine kinase    CA_C3516
action filter_type
action intersection
action find_reverse
entity membrane-associated histidine kinase    CA_C3516
relation encodes
action find_reverse
entity Clostridium acetobutylicum ATCC 824
relation found in taxon
type nucleic acid sequence
{'AND': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'membrane-associated histidine kinase    CA_C3516'], [{'concept': 'nucleic acid sequence'}, 'found in taxon', 'Clostridium acetobutylicum ATCC 824']]}
SELECT DISTINCT ?w WHERE { ?w property:encodes resource:membrane-associated_histidine_kinase____CA_C3516 . ?w property:found_in_taxon resource:Clostridium_acetobutylicum_ATCC_824 . ?w rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23379270
SYSTEM
membrane-associated histidine kinase    CA_C3516
Q23379270
AND((c(Q863908),P688,Q23526219), (c(Q863908),P703,Q21102973))
action filter_type
action intersection
action find_reverse
entity Q23526219
relation P688
action find_reverse
entity Q21102973
relation P703
type Q863908
Membrane-associated histidine kinase CA C3516 encodes membrane-associated histidine kinase CA_C3516 and are found in the taxon Clostridium acetobutylicum ATCC 824
{'AND': [[{'concept': 'Q863908'}, 'P688', 'Q23526219'], [{'concept': 'Q863908'}, 'P703', 'Q21102973']]}
SELECT DISTINCT ?w WHERE { ?w property:P688 resource:Q23526219 . ?w property:P703 resource:Q21102973 . ?w rdf:type ontology:Q863908 }
membrane-associated histidine kinase    CA_C3516
Membrane-associated histidine kinase CA C3516 encodes membrane-associated histidine kinase CA_C3516 and are found in the taxon Clostridium acetobutylicum ATCC 824
membrane-associated histidine kinase    CA_C3516
action filter_type
action intersection
action find_reverse
entity membrane-associated histidine kinase    CA_C3516
relation encodes
action find_reverse
entity Clostridium acetobutylicum ATCC 824
relation found in taxon
type nucleic acid sequence
{'AND': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'membrane-associated histidine kinase    CA_C3516'], [{'concept': 'nucleic acid sequence'}, 'found in taxon', 'Clostridium acetobutylicum ATCC 824']]}
SELECT DISTINCT ?w WHERE { ?w property:encodes resource:membrane-associated_histidine_kinase____CA_C3516 . ?w property:found_in_taxon resource:Clostridium_acetobutylicum_ATCC_824 . ?w rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q23379270 Q23526219
P702
Q181394
USER
Is membrane-associated histidine kinase    CA_C3516 encoded by that nucleic acid sequence ?
(Q23526219,P702,Q23379270)
action is_in
entity Q23379270
action find
entity Q23526219
relation P702
['Q23526219', 'P702', 'Q23379270']
ASK WHERE { resource:Q23526219 property:P702 resource:Q23379270 }
membrane-associated histidine kinase    CA_C3516 membrane-associated histidine kinase    CA_C3516
action is_in
entity membrane-associated histidine kinase    CA_C3516
action find
entity membrane-associated histidine kinase    CA_C3516
relation encoded by
['membrane-associated histidine kinase    CA_C3516', 'encoded by', 'membrane-associated histidine kinase    CA_C3516']
ASK WHERE { resource:membrane-associated_histidine_kinase____CA_C3516 property:encoded_by resource:membrane-associated_histidine_kinase____CA_C3516 }
[]
nutrient
SYSTEM
YES
(Q23526219,P702,Q23379270)
action is_in
entity Q23379270
action find
entity Q23526219
relation P702
[ANSWER]
['Q23526219', 'P702', 'Q23379270']
ASK WHERE { resource:Q23526219 property:P702 resource:Q23379270 }
Yes
action is_in
entity membrane-associated histidine kinase    CA_C3516
action find
entity membrane-associated histidine kinase    CA_C3516
relation encoded by
['membrane-associated histidine kinase    CA_C3516', 'encoded by', 'membrane-associated histidine kinase    CA_C3516']
ASK WHERE { resource:membrane-associated_histidine_kinase____CA_C3516 property:encoded_by resource:membrane-associated_histidine_kinase____CA_C3516 }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q18037203 Q23379270
P688
Q181394
USER
Which nutrients are encoded by membrane-associated histidine kinase    CA_C3516 or CAPN7 ?
OR((Q23379270,P688,c(Q181394)), (Q18037203,P688,c(Q181394)))
action filter_type
action union
action find
entity Q23379270
relation P688
action find
entity Q18037203
relation P688
type Q181394
{'OR': [['Q23379270', 'P688', {'concept': 'Q181394'}], ['Q18037203', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?j WHERE { { { resource:Q23379270 property:P688 ?j } UNION { resource:Q18037203 property:P688 ?j } } . ?j rdf:type ontology:Q181394 }
CAPN7 membrane-associated histidine kinase    CA_C3516
action filter_type
action union
action find
entity membrane-associated histidine kinase    CA_C3516
relation encodes
action find
entity CAPN7
relation encodes
type nutrient
{'OR': [['membrane-associated histidine kinase    CA_C3516', 'encodes', {'concept': 'nutrient'}], ['CAPN7', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?j WHERE { { { resource:membrane-associated_histidine_kinase____CA_C3516 property:encodes ?j } UNION { resource:CAPN7 property:encodes ?j } } . ?j rdf:type ontology:nutrient }
[]
nutrient
Q23526219 Q21131701 Q21112930
SYSTEM
membrane-associated histidine kinase    CA_C3516, Calpain 7, Calpain-7
Q23526219 Q21131701 Q21112930
OR((Q23379270,P688,c(Q181394)), (Q18037203,P688,c(Q181394)))
action filter_type
action union
action find
entity Q23379270
relation P688
action find
entity Q18037203
relation P688
type Q181394
[ANSWERS]
{'OR': [['Q23379270', 'P688', {'concept': 'Q181394'}], ['Q18037203', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?j WHERE { { { resource:Q23379270 property:P688 ?j } UNION { resource:Q18037203 property:P688 ?j } } . ?j rdf:type ontology:Q181394 }
membrane-associated histidine kinase    CA_C3516 Calpain 7 Calpain-7
Membrane-associated histidine kinase CA C3516, Calpain 7 and Calpain-7 are encoded by membrane-associated histidine kinase CA_C3516 or CAPN7
membrane-associated histidine kinase    CA_C3516 Calpain 7 Calpain-7
action filter_type
action union
action find
entity membrane-associated histidine kinase    CA_C3516
relation encodes
action find
entity CAPN7
relation encodes
type nutrient
{'OR': [['membrane-associated histidine kinase    CA_C3516', 'encodes', {'concept': 'nutrient'}], ['CAPN7', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?j WHERE { { { resource:membrane-associated_histidine_kinase____CA_C3516 property:encodes ?j } UNION { resource:CAPN7 property:encodes ?j } } . ?j rdf:type ontology:nutrient }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Logical operators
Q23526219
P681
Q5058355 Q15989253
USER
How many cellular components or parts are components of membrane-associated histidine kinase    CA_C3516 ?
(Q23526219,P681,c(Q5058355)) (Q23526219,P681,c(Q15989253))
action count
action union
action filter_type
action find
entity Q23526219
relation P681
type Q5058355
action filter_type
action find
entity Q23526219
relation P681
type Q15989253
['Q23526219', 'P681', {'concept': 'Q5058355'}] ['Q23526219', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ( COUNT ( ?i ) AS ?b ) WHERE { VALUES ( ?z ) { ( ontology:Q5058355 ) ( ontology:Q15989253 ) } . ?i rdf:type ?z }
membrane-associated histidine kinase    CA_C3516
action count
action union
action filter_type
action find
entity membrane-associated histidine kinase    CA_C3516
relation cell component
type cellular component
action filter_type
action find
entity membrane-associated histidine kinase    CA_C3516
relation cell component
type part
['membrane-associated histidine kinase    CA_C3516', 'cell component', {'concept': 'cellular component'}] ['membrane-associated histidine kinase    CA_C3516', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ( COUNT ( ?i ) AS ?b ) WHERE { VALUES ( ?z ) { ( ontology:cellular_component ) ( ontology:part ) } . ?i rdf:type ?z }
[]
cellular component part
SYSTEM
2
Q3824358 Q14349455
(Q23526219,P681,c(Q5058355)) (Q23526219,P681,c(Q15989253))
action count
action union
action filter_type
action find
entity Q23526219
relation P681
type Q5058355
action filter_type
action find
entity Q23526219
relation P681
type Q15989253
[ANSWER]
['Q23526219', 'P681', {'concept': 'Q5058355'}] ['Q23526219', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ( COUNT ( ?i ) AS ?b ) WHERE { VALUES ( ?z ) { ( ontology:Q5058355 ) ( ontology:Q15989253 ) } . ?i rdf:type ?z }
intracellular membrane
2
action count
action union
action filter_type
action find
entity membrane-associated histidine kinase    CA_C3516
relation cell component
type cellular component
action filter_type
action find
entity membrane-associated histidine kinase    CA_C3516
relation cell component
type part
['membrane-associated histidine kinase    CA_C3516', 'cell component', {'concept': 'cellular component'}] ['membrane-associated histidine kinase    CA_C3516', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ( COUNT ( ?i ) AS ?b ) WHERE { VALUES ( ?z ) { ( ontology:cellular_component ) ( ontology:part ) } . ?i rdf:type ?z }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q21131865 Q23526219
P681
Q5058355
USER
Which cellular components are components of membrane-associated histidine kinase    CA_C3516 or Ubiquitin-40S ribosomal protein S27a ?
OR((Q23526219,P681,c(Q5058355)), (Q21131865,P681,c(Q5058355)))
action filter_type
action union
action find
entity Q23526219
relation P681
action find
entity Q21131865
relation P681
type Q5058355
{'OR': [['Q23526219', 'P681', {'concept': 'Q5058355'}], ['Q21131865', 'P681', {'concept': 'Q5058355'}]]}
SELECT DISTINCT ?r WHERE { { { resource:Q23526219 property:P681 ?r } UNION { resource:Q21131865 property:P681 ?r } } . ?r rdf:type ontology:Q5058355 }
Ubiquitin-40S ribosomal protein S27a membrane-associated histidine kinase    CA_C3516
action filter_type
action union
action find
entity membrane-associated histidine kinase    CA_C3516
relation cell component
action find
entity Ubiquitin-40S ribosomal protein S27a
relation cell component
type cellular component
{'OR': [['membrane-associated histidine kinase    CA_C3516', 'cell component', {'concept': 'cellular component'}], ['Ubiquitin-40S ribosomal protein S27a', 'cell component', {'concept': 'cellular component'}]]}
SELECT DISTINCT ?r WHERE { { { resource:membrane-associated_histidine_kinase____CA_C3516 property:cell_component ?r } UNION { resource:Ubiquitin-40S_ribosomal_protein_S27a property:cell_component ?r } } . ?r rdf:type ontology:cellular_component }
[]
cellular component
Q2914458 Q29548 Q14863372 Q3824358
SYSTEM
extracellular space, plasma membrane, myelin sheath, intracellular
Q2914458 Q29548 Q14863372 Q3824358
OR((Q23526219,P681,c(Q5058355)), (Q21131865,P681,c(Q5058355)))
action filter_type
action union
action find
entity Q23526219
relation P681
action find
entity Q21131865
relation P681
type Q5058355
The [ANSWERS] are components of membrane-associated histidine kinase CA_C3516 or Ubiquitin-40S ribosomal protein S27a
{'OR': [['Q23526219', 'P681', {'concept': 'Q5058355'}], ['Q21131865', 'P681', {'concept': 'Q5058355'}]]}
SELECT DISTINCT ?r WHERE { { { resource:Q23526219 property:P681 ?r } UNION { resource:Q21131865 property:P681 ?r } } . ?r rdf:type ontology:Q5058355 }
extracellular space plasma membrane myelin sheath intracellular
The extracellular space, plasma membrane, myelin sheath and intracellular are components of membrane-associated histidine kinase CA_C3516 or Ubiquitin-40S ribosomal protein S27a
extracellular space plasma membrane myelin sheath intracellular
action filter_type
action union
action find
entity membrane-associated histidine kinase    CA_C3516
relation cell component
action find
entity Ubiquitin-40S ribosomal protein S27a
relation cell component
type cellular component
{'OR': [['membrane-associated histidine kinase    CA_C3516', 'cell component', {'concept': 'cellular component'}], ['Ubiquitin-40S ribosomal protein S27a', 'cell component', {'concept': 'cellular component'}]]}
SELECT DISTINCT ?r WHERE { { { resource:membrane-associated_histidine_kinase____CA_C3516 property:cell_component ?r } UNION { resource:Ubiquitin-40S_ribosomal_protein_S27a property:cell_component ?r } } . ?r rdf:type ontology:cellular_component }
[]
Clarification
Comparative|Count over More/Less|Single entity type|Indirect
P681
Q5058355 Q181394
USER
How many cellular components are the components of lesser number of nutrients than that cellular component ?
(c(Q181394),P681,c(Q5058355))
[{'concept': 'Q181394'}, 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?x ) WHERE { ?z property:P681 ?y . ?z rdf:type ontology:Q181394 . ?y rdf:type ontology:Q5058355 }
[{'concept': 'nutrient'}, 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?x ) WHERE { ?z property:cell_component ?y . ?z rdf:type ontology:nutrient . ?y rdf:type ontology:cellular_component }
[]
cellular component nutrient
Comparative|Count over More/Less|Single entity type|Clarification
Q2914458
SYSTEM
Did you mean extracellular space ?
(c(Q181394),P681,c(Q5058355))
[ANSWER]
[{'concept': 'Q181394'}, 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?x ) WHERE { ?z property:P681 ?y . ?z rdf:type ontology:Q181394 . ?y rdf:type ontology:Q5058355 }
Did you mean extracellular space ?
extracellular space
[{'concept': 'nutrient'}, 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?x ) WHERE { ?z property:cell_component ?y . ?z rdf:type ontology:nutrient . ?y rdf:type ontology:cellular_component }
[]
Comparative Reasoning (Count) (All)
USER
Yes
(c(Q181394),P681,c(Q5058355))
[{'concept': 'Q181394'}, 'P681', {'concept': 'Q5058355'}]
[{'concept': 'nutrient'}, 'cell component', {'concept': 'cellular component'}]
[]
SYSTEM
145
Q7322268 Q21106124 Q21978575 Q21116315 Q14912978 Q14864171 Q21108229 Q22328732 Q21110192 Q21146508 Q14878067 Q14864978 Q24629101 Q14864977 Q14864971 Q1604780 Q21124326 Q21116899 Q14860843 Q22327688 Q22327479 Q22327686 Q14330626 Q22327683 Q21172343 Q21172341 Q24576567 Q21108045 Q671136 Q22326188 Q21469807 Q14877465 Q189094 Q14876131 Q24629096 Q22328493 Q21120634 Q14864391 Q14864390 Q14914004 Q21095183 Q14873624 Q14329032 Q21199165 Q14905221 Q22326802 Q21199358 Q21759948 Q21097473 Q21105647 Q21198643 Q21106212 Q21423046 Q14864382 Q14353100 Q22326799 Q14911512 Q22325164 Q26253851 Q21136996 Q21103154 Q14863372 Q21181370 Q420927 Q22327404 Q22327654 Q22327015 Q21109092 Q22327525 Q14905147 Q22329412 Q180436 Q22327092 Q21763002 Q15320191 Q21971414 Q21095089 Q22327884 Q14819352 Q21118409 Q14762605 Q14864266 Q21108411 Q21750262 Q21468808 Q21198990 Q21104759 Q14876059 Q21484280 Q21758669 Q22329407 Q22328605 Q14877492 Q14873267 Q22327128 Q21760978 Q21107992 Q22328801 Q5419646 Q21126899 Q14819441 Q1640852 Q21107481 Q21105674 Q21097505 Q22327033 Q14864663 Q14863683 Q21102478 Q14349538 Q22328819 Q138639 Q21120639 Q14330629 Q776995 Q21971286 Q21105988 Q21095308 Q21115425 Q14864857 Q14888035 Q1065756 Q22326843 Q180951 Q7168931 Q14906187 Q22327475 Q14864520 Q21112489 Q22328743 Q22328105 Q14860546 Q14860540 Q14864866 Q22328121 Q899827 Q6414172 Q21109697 Q22327736 Q14906135 Q22326919 Q14882095 Q21095620 Q193825 Q22327423
(c(Q181394),P681,c(Q5058355))
[ANSWER]
[{'concept': 'Q181394'}, 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?x ) WHERE { ?z property:P681 ?y . ?z rdf:type ontology:Q181394 . ?y rdf:type ontology:Q5058355 }
ribbon synapse viral capsid tripartite ATP-independent periplasmic transporter complex viral nucleocapsid mitochondrial nucleoid cell periphery subapical complex Pex17p-Pex14p docking complex organelle membrane contact site mucus layer organelle membrane lipopolysaccharide receptor complex glutamatergic synapse plasma membrane part succinate dehydrogenase complex hemidesmosome protein serine/threonine phosphatase complex complement component C1 complex nuclear outer membrane prospore membrane leading edge presynapse prospore membrane myelin sheath abaxonal region eisosome inner dense plaque of desmosome outer dense plaque of desmosome perisynaptic extracellular matrix molybdopterin synthase complex synaptic vesicle aster dolichyl-phosphate-mannose-protein mannosyltransferase complex receptor complex cell surface compact myelin GABA-ergic synapse cell envelope Sec protein transport complex interleukin-12 complex intracellular organelle synaptic vesicle membrane synaptic membrane dendritic spine head intercellular bridge endoplasmic reticulum membrane type III protein secretion system complex symbiont-containing vacuole membrane endoplasmic reticulum palmitoyltransferase complex bacterial nucleoid NADH dehydrogenase complex cell pole transmembrane transporter complex riboflavin synthase complex GPI-anchor transamidase complex membrane-bounded organelle presynaptic active zone cell projection alpha-1,6-mannosyltransferase complex stereocilium protein-lipid complex integral component of spine apparatus membrane immunoglobulin complex, circulating inhibitory synapse myelin sheath outer membrane protein complex ribonucleoprotein complex annulate lamellae photosystem II oxygen evolving complex nuclear outer membrane-endoplasmic reticulum membrane network cytoplasmic side of dendritic spine plasma membrane intrinsic component of membrane cytoophidium cilium protein complex involved in cell adhesion polyphosphate kinase complex synaptic cleft plasma lipoprotein particle blood microparticle cellular bud respiratory chain hyaluranon cable midbody cell-substrate junction CNTFR-CLCF1 complex cell division site retromer, tubulation complex periplasmic space perinuclear endoplasmic reticulum membrane phosphatidylinositol 3-kinase complex retromer, cargo-selective complex type II protein secretion system complex envelope PET complex lateral loop cell-cell junction fatty acid beta-oxidation multienzyme complex type I protein secretion system complex ER ubiquitin ligase complex TRAPPI protein complex excitatory synapse cell tip fibrinogen complex Schmidt-Lanterman incisure site of polarized growth Nem1-Spo7 phosphatase complex dendritic spine neck DNA repair complex transcriptional repressor complex insulin-like growth factor binding protein complex other organism cell apical part of cell HICS complex peroxisome interleukin-23 complex myelin sheath adaxonal region neuromuscular junction oligosaccharyltransferase complex stereocilium membrane retromer complex Ire1 complex cell leading edge protein-DNA complex melanosome Dsc E3 ubiquitin ligase complex chromatin perivitelline space CRLF-CLCF1 complex postsynapse extrinsic component of membrane stereocilium tip RNA cap binding complex cell septum basal part of cell clathrin-coated pit cell body intracellular immature spore endomembrane system kinocilium cyclin-dependent protein kinase 5 holoenzyme complex chaperone-mediated autophagy translocation complex contractile ring aspartate carbamoyltransferase complex angiogenin-PRI complex Flemming body extracellular matrix extracellular organelle
145
[{'concept': 'nutrient'}, 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?x ) WHERE { ?z property:cell_component ?y . ?z rdf:type ontology:nutrient . ?y rdf:type ontology:cellular_component }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type
Q23379270
P688
Q181394
USER
How many nutrients are membrane-associated histidine kinase    CA_C3516 an encoding of ?
(Q23379270,P688,c(Q181394))
action count
action filter_type
action find
entity Q23379270
relation P688
type Q181394
['Q23379270', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?l ) AS ?i ) WHERE { resource:Q23379270 property:P688 ?l . ?l rdf:type ontology:Q181394 }
membrane-associated histidine kinase    CA_C3516
action count
action filter_type
action find
entity membrane-associated histidine kinase    CA_C3516
relation encodes
type nutrient
['membrane-associated histidine kinase    CA_C3516', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?l ) AS ?i ) WHERE { resource:membrane-associated_histidine_kinase____CA_C3516 property:encodes ?l . ?l rdf:type ontology:nutrient }
[]
nutrient
SYSTEM
1
Q23526219
(Q23379270,P688,c(Q181394))
action count
action filter_type
action find
entity Q23379270
relation P688
type Q181394
[ANSWER]
['Q23379270', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?l ) AS ?i ) WHERE { resource:Q23379270 property:P688 ?l . ?l rdf:type ontology:Q181394 }
membrane-associated histidine kinase    CA_C3516
1
action count
action filter_type
action find
entity membrane-associated histidine kinase    CA_C3516
relation encodes
type nutrient
['membrane-associated histidine kinase    CA_C3516', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?l ) AS ?i ) WHERE { resource:membrane-associated_histidine_kinase____CA_C3516 property:encodes ?l . ?l rdf:type ontology:nutrient }
[]
Quantitative Reasoning (Count) (All)
Incomplete count-based ques
Q23228279
Q181394
USER
And also tell me about hypothetical protein    spr1447?
(Q23228279,P688,c(Q181394))
action count
action filter_type
action find
entity Q23228279
relation P688
type Q181394
['Q23228279', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?i ) AS ?z ) WHERE { resource:Q23228279 property:P688 ?i . ?i rdf:type ontology:Q181394 }
hypothetical protein    spr1447
action count
action filter_type
action find
entity hypothetical protein    spr1447
relation encodes
type nutrient
['hypothetical protein    spr1447', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?i ) AS ?z ) WHERE { resource:hypothetical_protein____spr1447 property:encodes ?i . ?i rdf:type ontology:nutrient }
[]
nutrient
SYSTEM
1
(Q23228279,P688,c(Q181394))
action count
action filter_type
action find
entity Q23228279
relation P688
type Q181394
[ANSWER]
['Q23228279', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?i ) AS ?z ) WHERE { resource:Q23228279 property:P688 ?i . ?i rdf:type ontology:Q181394 }
1
action count
action filter_type
action find
entity hypothetical protein    spr1447
relation encodes
type nutrient
['hypothetical protein    spr1447', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?i ) AS ?z ) WHERE { resource:hypothetical_protein____spr1447 property:encodes ?i . ?i rdf:type ontology:nutrient }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q181394 Q8386 Q181394
USER
How many nutrients do exactly 21 drugs and nutrients communicate with ?
(c(Q8386)|c(Q181394),P129,c(Q181394))
action count
action equal
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
value 21
[[{'concept': 'Q8386'}, {'concept': 'Q181394'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?d ) AS ?c ) WHERE { FILTER ( ?y = 21 ) . { SELECT DISTINCT ( COUNT ( ?f ) AS ?y ) ?d WHERE { { ?f property:P129 ?d . ?d rdf:type ontology:Q181394 . ?f rdf:type ontology:Q181394 } UNION { ?f property:P129 ?d . ?d rdf:type ontology:Q181394 . ?f rdf:type ontology:Q8386 } } GROUP BY ?d } }
action count
action equal
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
value 21
[[{'concept': 'drug'}, {'concept': 'nutrient'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?d ) AS ?c ) WHERE { FILTER ( ?y = 21 ) . { SELECT DISTINCT ( COUNT ( ?f ) AS ?y ) ?d WHERE { { ?f property:physically_interacts_with ?d . ?d rdf:type ontology:nutrient . ?f rdf:type ontology:nutrient } UNION { ?f property:physically_interacts_with ?d . ?d rdf:type ontology:nutrient . ?f rdf:type ontology:drug } } GROUP BY ?d } }
[]
nutrient drug nutrient
SYSTEM
4
Q5123372 Q21109355 Q4734894 Q4734891
(c(Q8386)|c(Q181394),P129,c(Q181394))
action count
action equal
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
value 21
[ANSWER]
[[{'concept': 'Q8386'}, {'concept': 'Q181394'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?d ) AS ?c ) WHERE { FILTER ( ?y = 21 ) . { SELECT DISTINCT ( COUNT ( ?f ) AS ?y ) ?d WHERE { { ?f property:P129 ?d . ?d rdf:type ontology:Q181394 . ?f rdf:type ontology:Q181394 } UNION { ?f property:P129 ?d . ?d rdf:type ontology:Q181394 . ?f rdf:type ontology:Q8386 } } GROUP BY ?d } }
Mu-type opioid receptor 5-hydroxytryptamine receptor 7 Alpha-2B adrenergic receptor Alpha-2C adrenergic receptor
4
action count
action equal
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
value 21
[[{'concept': 'drug'}, {'concept': 'nutrient'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?d ) AS ?c ) WHERE { FILTER ( ?y = 21 ) . { SELECT DISTINCT ( COUNT ( ?f ) AS ?y ) ?d WHERE { { ?f property:physically_interacts_with ?d . ?d rdf:type ontology:nutrient . ?f rdf:type ontology:nutrient } UNION { ?f property:physically_interacts_with ?d . ?d rdf:type ontology:nutrient . ?f rdf:type ontology:drug } } GROUP BY ?d } }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q18038807 Q18037203
P688
Q181394
USER
Which nutrients are encoded by CAPN7 or MAT2B ?
OR((Q18037203,P688,c(Q181394)), (Q18038807,P688,c(Q181394)))
action filter_type
action union
action find
entity Q18037203
relation P688
action find
entity Q18038807
relation P688
type Q181394
{'OR': [['Q18037203', 'P688', {'concept': 'Q181394'}], ['Q18038807', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?n WHERE { ?n rdf:type ontology:Q181394 . { { resource:Q18037203 property:P688 ?n } UNION { resource:Q18038807 property:P688 ?n } } }
MAT2B CAPN7
action filter_type
action union
action find
entity CAPN7
relation encodes
action find
entity MAT2B
relation encodes
type nutrient
{'OR': [['CAPN7', 'encodes', {'concept': 'nutrient'}], ['MAT2B', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?n WHERE { ?n rdf:type ontology:nutrient . { { resource:CAPN7 property:encodes ?n } UNION { resource:MAT2B property:encodes ?n } } }
[]
nutrient
Q21151213 Q21111099 Q21131701 Q21112930
SYSTEM
Methionine adenosyltransferase 2 subunit beta, Methionine adenosyltransferase 2 subunit beta, Calpain 7, Calpain-7
Q21151213 Q21111099 Q21131701 Q21112930
OR((Q18037203,P688,c(Q181394)), (Q18038807,P688,c(Q181394)))
action filter_type
action union
action find
entity Q18037203
relation P688
action find
entity Q18038807
relation P688
type Q181394
[ANSWERS] are encoded by CAPN7 or MAT2B
{'OR': [['Q18037203', 'P688', {'concept': 'Q181394'}], ['Q18038807', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?n WHERE { ?n rdf:type ontology:Q181394 . { { resource:Q18037203 property:P688 ?n } UNION { resource:Q18038807 property:P688 ?n } } }
Methionine adenosyltransferase 2 subunit beta Methionine adenosyltransferase 2 subunit beta Calpain 7 Calpain-7
Methionine adenosyltransferase 2 subunit beta, Methionine adenosyltransferase 2 subunit beta, Calpain 7 and Calpain-7 are encoded by CAPN7 or MAT2B
Methionine adenosyltransferase 2 subunit beta Methionine adenosyltransferase 2 subunit beta Calpain 7 Calpain-7
action filter_type
action union
action find
entity CAPN7
relation encodes
action find
entity MAT2B
relation encodes
type nutrient
{'OR': [['CAPN7', 'encodes', {'concept': 'nutrient'}], ['MAT2B', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?n WHERE { ?n rdf:type ontology:nutrient . { { resource:CAPN7 property:encodes ?n } UNION { resource:MAT2B property:encodes ?n } } }
[]
Simple Question (Coreferenced)
Simple Question|Mult. Entity
Q21151213 Q21111099 Q21131701 Q21112930
P688
Q863908
USER
Which nucleic acid sequences encode those nutrients ?
(c(Q863908),P688,Q21151213) (c(Q863908),P688,Q21111099) (c(Q863908),P688,Q21131701) (c(Q863908),P688,Q21112930)
action filter_type
action find_reverse
entity prev_answer
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q21151213'] [{'concept': 'Q863908'}, 'P688', 'Q21111099'] [{'concept': 'Q863908'}, 'P688', 'Q21131701'] [{'concept': 'Q863908'}, 'P688', 'Q21112930']
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:Q863908 . VALUES ( ?t ) { ( resource:Q21151213 ) ( resource:Q21111099 ) ( resource:Q21131701 ) } . ?u property:P688 ?t }
Methionine adenosyltransferase 2 subunit beta Methionine adenosyltransferase 2 subunit beta Calpain 7 Calpain-7
action filter_type
action find_reverse
entity prev_answer
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Methionine adenosyltransferase 2 subunit beta'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'Methionine adenosyltransferase 2 subunit beta'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'Calpain 7'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'Calpain-7']
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:nucleic_acid_sequence . VALUES ( ?t ) { ( resource:Methionine_adenosyltransferase_2_subunit_beta ) ( resource:Methionine_adenosyltransferase_2_subunit_beta ) ( resource:Calpain_7 ) } . ?u property:encodes ?t }
[]
nucleic acid sequence
Q18038807 Q18038807 Q18037203
SYSTEM
CAPN7 for 3rd, MAT2B for 1st, 2nd
Q18038807 Q18038807 Q18037203 Q18037203
(c(Q863908),P688,Q21151213) (c(Q863908),P688,Q21111099) (c(Q863908),P688,Q21131701) (c(Q863908),P688,Q21112930)
action filter_type
action find_reverse
entity prev_answer
relation P688
type Q863908
[ANSWERS]
[{'concept': 'Q863908'}, 'P688', 'Q21151213'] [{'concept': 'Q863908'}, 'P688', 'Q21111099'] [{'concept': 'Q863908'}, 'P688', 'Q21131701'] [{'concept': 'Q863908'}, 'P688', 'Q21112930']
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:Q863908 . VALUES ( ?t ) { ( resource:Q21151213 ) ( resource:Q21111099 ) ( resource:Q21131701 ) } . ?u property:P688 ?t }
MAT2B MAT2B CAPN7 CAPN7
MAT2B, MAT2B and CAPN7 encode those nutrients
MAT2B MAT2B CAPN7
action filter_type
action find_reverse
entity prev_answer
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Methionine adenosyltransferase 2 subunit beta'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'Methionine adenosyltransferase 2 subunit beta'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'Calpain 7'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'Calpain-7']
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:nucleic_acid_sequence . VALUES ( ?t ) { ( resource:Methionine_adenosyltransferase_2_subunit_beta ) ( resource:Methionine_adenosyltransferase_2_subunit_beta ) ( resource:Calpain_7 ) } . ?u property:encodes ?t }
[]
Clarification
Simple Question|Single Entity|Indirect
Q18038807
P684
Q863908
USER
Which nucleic acid sequence has that one as its orthologous gene ?
(c(Q863908),P684,Q18038807)
action filter_type
action find
entity Q18038807
relation P684
type Q863908
[{'concept': 'Q863908'}, 'P684', 'Q18038807']
SELECT DISTINCT ?y WHERE { resource:Q18038807 property:P684 ?y . ?y rdf:type ontology:Q863908 }
MAT2B
action filter_type
action find
entity MAT2B
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'MAT2B']
SELECT DISTINCT ?y WHERE { resource:MAT2B property:ortholog ?y . ?y rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Clarification for simple ques.
Q18037203
SYSTEM
Did you mean CAPN7 ?
Q18038807 Q18038807 Q18037203
(c(Q863908),P684,Q18038807) (c(Q863908),P684,Q18038807) (c(Q863908),P684,Q18037203)
[ANSWER]
[{'concept': 'Q863908'}, 'P684', 'Q18038807'] [{'concept': 'Q863908'}, 'P684', 'Q18038807'] [{'concept': 'Q863908'}, 'P684', 'Q18037203']
SELECT DISTINCT ?y WHERE { resource:Q18038807 property:P684 ?y . ?y rdf:type ontology:Q863908 }
MAT2B MAT2B CAPN7
Did you mean CAPN7 ?
CAPN7
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'MAT2B'] [{'concept': 'nucleic acid sequence'}, 'ortholog', 'MAT2B'] [{'concept': 'nucleic acid sequence'}, 'ortholog', 'CAPN7']
SELECT DISTINCT ?y WHERE { resource:MAT2B property:ortholog ?y . ?y rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
USER
No, I meant MAT2B. Could you tell me the answer for that?
(c(Q863908),P684,Q18038807)
Q18038807
[{'concept': 'Q863908'}, 'P684', 'Q18038807']
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'MAT2B']
[]
Q18273376
SYSTEM
Mat2b
Q18273376
(c(Q863908),P684,Q18038807)
action filter_type
action find
entity Q18038807
relation P684
type Q863908
[ANSWER] has that one as its orthologous gene
[{'concept': 'Q863908'}, 'P684', 'Q18038807']
SELECT DISTINCT ?y WHERE { resource:Q18038807 property:P684 ?y . ?y rdf:type ontology:Q863908 }
Mat2b
Mat2b has that one as its orthologous gene
Mat2b
action filter_type
action find
entity MAT2B
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'MAT2B']
SELECT DISTINCT ?y WHERE { resource:MAT2B property:ortholog ?y . ?y rdf:type ontology:nucleic_acid_sequence }
[]