Simple Question (Direct)
Simple Question
Q23064071
P703
Q631147
USER
Where is sodium:solute symporter    LA_2133 found ?
(Q23064071,P703,c(Q631147))
action filter_type
action find
entity Q23064071
relation P703
type Q631147
['Q23064071', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?l WHERE { ?l rdf:type ontology:Q631147 . resource:Q23064071 property:P703 ?l }
sodium:solute symporter    LA_2133
action filter_type
action find
entity sodium:solute symporter    LA_2133
relation found in taxon
type infraspecific name
['sodium:solute symporter    LA_2133', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?l WHERE { ?l rdf:type ontology:infraspecific_name . resource:sodium:solute_symporter____LA_2133 property:found_in_taxon ?l }
[]
infraspecific name
Q21065229
SYSTEM
Leptospira interrogans serovar Lai str. 56601
Q21065229
(Q23064071,P703,c(Q631147))
action filter_type
action find
entity Q23064071
relation P703
type Q631147
Sodium : solute symporter LA_2133 is found in [ANSWER]
['Q23064071', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?l WHERE { ?l rdf:type ontology:Q631147 . resource:Q23064071 property:P703 ?l }
Leptospira interrogans serovar Lai str. 56601
Sodium : solute symporter LA_2133 is found in Leptospira interrogans serovar Lai str. 56601
Leptospira interrogans serovar Lai str. 56601
action filter_type
action find
entity sodium:solute symporter    LA_2133
relation found in taxon
type infraspecific name
['sodium:solute symporter    LA_2133', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?l WHERE { ?l rdf:type ontology:infraspecific_name . resource:sodium:solute_symporter____LA_2133 property:found_in_taxon ?l }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23064071
P681
Q15989253
USER
Which is the cell component of that nutrient ?
(Q21065229,P681,c(Q15989253))
action filter_type
action find
entity Q23064071
relation P681
type Q15989253
['Q21065229', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?v WHERE { resource:Q23064071 property:P681 ?v . ?v rdf:type ontology:Q15989253 }
sodium:solute symporter    LA_2133
action filter_type
action find
entity sodium:solute symporter    LA_2133
relation cell component
type part
['Leptospira interrogans serovar Lai str. 56601', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?v WHERE { resource:sodium:solute_symporter____LA_2133 property:cell_component ?v . ?v rdf:type ontology:part }
[]
part
Q14349455
SYSTEM
membrane
Q14349455
(Q21065229,P681,c(Q15989253))
action filter_type
action find
entity Q23064071
relation P681
type Q15989253
The [ANSWER] is the cell component of that nutrient
['Q21065229', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?v WHERE { resource:Q23064071 property:P681 ?v . ?v rdf:type ontology:Q15989253 }
membrane
The membrane is the cell component of that nutrient
membrane
action filter_type
action find
entity sodium:solute symporter    LA_2133
relation cell component
type part
['Leptospira interrogans serovar Lai str. 56601', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?v WHERE { resource:sodium:solute_symporter____LA_2133 property:cell_component ?v . ?v rdf:type ontology:part }
[]
Logical Reasoning (All)
Logical|Intersection|Single_Relation|Incomplete
Q21173716 Q23064071
P681
Q15989253
USER
And also Polypeptide N-acetylgalactosaminyltransferase 16
AND((Q23064071,P681,c(Q15989253)), (Q21173716,P681,c(Q15989253)))
action filter_type
action intersection
action find
entity Q23064071
relation P681
action find
entity Q21173716
relation P681
type Q15989253
{'AND': [['Q23064071', 'P681', {'concept': 'Q15989253'}], ['Q21173716', 'P681', {'concept': 'Q15989253'}]]}
SELECT DISTINCT ?e WHERE { resource:Q23064071 property:P681 ?e . resource:Q21173716 property:P681 ?e . ?e rdf:type ontology:Q15989253 }
Polypeptide N-acetylgalactosaminyltransferase 16 sodium:solute symporter    LA_2133
action filter_type
action intersection
action find
entity sodium:solute symporter    LA_2133
relation cell component
action find
entity Polypeptide N-acetylgalactosaminyltransferase 16
relation cell component
type part
{'AND': [['sodium:solute symporter    LA_2133', 'cell component', {'concept': 'part'}], ['Polypeptide N-acetylgalactosaminyltransferase 16', 'cell component', {'concept': 'part'}]]}
SELECT DISTINCT ?e WHERE { resource:sodium:solute_symporter____LA_2133 property:cell_component ?e . resource:Polypeptide_N-acetylgalactosaminyltransferase_16 property:cell_component ?e . ?e rdf:type ontology:part }
[]
part
Q14349455
SYSTEM
membrane
Q14349455
AND((Q23064071,P681,c(Q15989253)), (Q21173716,P681,c(Q15989253)))
action filter_type
action intersection
action find
entity Q23064071
relation P681
action find
entity Q21173716
relation P681
type Q15989253
[ANSWER]
{'AND': [['Q23064071', 'P681', {'concept': 'Q15989253'}], ['Q21173716', 'P681', {'concept': 'Q15989253'}]]}
SELECT DISTINCT ?e WHERE { resource:Q23064071 property:P681 ?e . resource:Q21173716 property:P681 ?e . ?e rdf:type ontology:Q15989253 }
membrane
membrane
action filter_type
action intersection
action find
entity sodium:solute symporter    LA_2133
relation cell component
action find
entity Polypeptide N-acetylgalactosaminyltransferase 16
relation cell component
type part
{'AND': [['sodium:solute symporter    LA_2133', 'cell component', {'concept': 'part'}], ['Polypeptide N-acetylgalactosaminyltransferase 16', 'cell component', {'concept': 'part'}]]}
SELECT DISTINCT ?e WHERE { resource:sodium:solute_symporter____LA_2133 property:cell_component ?e . resource:Polypeptide_N-acetylgalactosaminyltransferase_16 property:cell_component ?e . ?e rdf:type ontology:part }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q22234832 Q23064071
P688
Q863908
USER
Which nucleic acid sequences encodes sodium:solute symporter    LA_2133 or zinc metalloprotease    Rv0198c ?
OR((c(Q863908),P688,Q23064071), (c(Q863908),P688,Q22234832))
action filter_type
action union
action find_reverse
entity Q23064071
relation P688
action find_reverse
entity Q22234832
relation P688
type Q863908
{'OR': [[{'concept': 'Q863908'}, 'P688', 'Q23064071'], [{'concept': 'Q863908'}, 'P688', 'Q22234832']]}
SELECT DISTINCT ?h WHERE { { { ?h property:P688 resource:Q23064071 } UNION { ?h property:P688 resource:Q22234832 } } . ?h rdf:type ontology:Q863908 }
zinc metalloprotease    Rv0198c sodium:solute symporter    LA_2133
action filter_type
action union
action find_reverse
entity sodium:solute symporter    LA_2133
relation encodes
action find_reverse
entity zinc metalloprotease    Rv0198c
relation encodes
type nucleic acid sequence
{'OR': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'sodium:solute symporter    LA_2133'], [{'concept': 'nucleic acid sequence'}, 'encodes', 'zinc metalloprotease    Rv0198c']]}
SELECT DISTINCT ?h WHERE { { { ?h property:encodes resource:sodium:solute_symporter____LA_2133 } UNION { ?h property:encodes resource:zinc_metalloprotease____Rv0198c } } . ?h rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23024833 Q22230039
SYSTEM
sodium:solute symporter    LA_2133, zinc metalloprotease    Rv0198c
Q23024833 Q22230039
OR((c(Q863908),P688,Q23064071), (c(Q863908),P688,Q22234832))
action filter_type
action union
action find_reverse
entity Q23064071
relation P688
action find_reverse
entity Q22234832
relation P688
type Q863908
[ANSWERS]
{'OR': [[{'concept': 'Q863908'}, 'P688', 'Q23064071'], [{'concept': 'Q863908'}, 'P688', 'Q22234832']]}
SELECT DISTINCT ?h WHERE { { { ?h property:P688 resource:Q23064071 } UNION { ?h property:P688 resource:Q22234832 } } . ?h rdf:type ontology:Q863908 }
sodium:solute symporter    LA_2133 zinc metalloprotease    Rv0198c
Sodium:solute symporter LA 2133 and zinc metalloprotease Rv0198c encode sodium:solute symporter LA_2133 or zinc metalloprotease Rv0198c
sodium:solute symporter    LA_2133 zinc metalloprotease    Rv0198c
action filter_type
action union
action find_reverse
entity sodium:solute symporter    LA_2133
relation encodes
action find_reverse
entity zinc metalloprotease    Rv0198c
relation encodes
type nucleic acid sequence
{'OR': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'sodium:solute symporter    LA_2133'], [{'concept': 'nucleic acid sequence'}, 'encodes', 'zinc metalloprotease    Rv0198c']]}
SELECT DISTINCT ?h WHERE { { { ?h property:encodes resource:sodium:solute_symporter____LA_2133 } UNION { ?h property:encodes resource:zinc_metalloprotease____Rv0198c } } . ?h rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q22234832
P702
Q863908
USER
Which gene encodes zinc metalloprotease    Rv0198c?
(Q23024833,P702,c(Q863908)) (Q22230039,P702,c(Q863908))
action filter_type
action find
entity Q22234832
relation P702
type Q863908
['Q23024833', 'P702', {'concept': 'Q863908'}] ['Q22230039', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?c WHERE { resource:Q22234832 property:P702 ?c . ?c rdf:type ontology:Q863908 }
zinc metalloprotease    Rv0198c
action filter_type
action find
entity zinc metalloprotease    Rv0198c
relation encoded by
type nucleic acid sequence
['sodium:solute symporter    LA_2133', 'encoded by', {'concept': 'nucleic acid sequence'}] ['zinc metalloprotease    Rv0198c', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?c WHERE { resource:zinc_metalloprotease____Rv0198c property:encoded_by ?c . ?c rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q22230039
SYSTEM
zinc metalloprotease    Rv0198c
Q22230039
(Q23024833,P702,c(Q863908)) (Q22230039,P702,c(Q863908))
action filter_type
action find
entity Q22234832
relation P702
type Q863908
Zinc metalloprotease Rv0198c encodes zinc metalloprotease Rv0198c
['Q23024833', 'P702', {'concept': 'Q863908'}] ['Q22230039', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?c WHERE { resource:Q22234832 property:P702 ?c . ?c rdf:type ontology:Q863908 }
zinc metalloprotease    Rv0198c
Zinc metalloprotease Rv0198c encodes zinc metalloprotease Rv0198c
zinc metalloprotease    Rv0198c
action filter_type
action find
entity zinc metalloprotease    Rv0198c
relation encoded by
type nucleic acid sequence
['sodium:solute symporter    LA_2133', 'encoded by', {'concept': 'nucleic acid sequence'}] ['zinc metalloprotease    Rv0198c', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?c WHERE { resource:zinc_metalloprotease____Rv0198c property:encoded_by ?c . ?c rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q24108572
Q863908
USER
And also tell me about dehydratase    SMa1408?
(Q24108572,P702,c(Q863908))
action filter_type
action find
entity Q24108572
relation P702
type Q863908
['Q24108572', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?t WHERE { resource:Q24108572 property:P702 ?t . ?t rdf:type ontology:Q863908 }
dehydratase    SMa1408
action filter_type
action find
entity dehydratase    SMa1408
relation encoded by
type nucleic acid sequence
['dehydratase    SMa1408', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?t WHERE { resource:dehydratase____SMa1408 property:encoded_by ?t . ?t rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23166440
SYSTEM
dehydratase    SMa1408
Q23166440
(Q24108572,P702,c(Q863908))
action filter_type
action find
entity Q24108572
relation P702
type Q863908
[ANSWER]
['Q24108572', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?t WHERE { resource:Q24108572 property:P702 ?t . ?t rdf:type ontology:Q863908 }
dehydratase    SMa1408
dehydratase    SMa1408
action filter_type
action find
entity dehydratase    SMa1408
relation encoded by
type nucleic acid sequence
['dehydratase    SMa1408', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?t WHERE { resource:dehydratase____SMa1408 property:encoded_by ?t . ?t rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|3 entities, 2 direct, 2(direct) are query entities, subject is indirect
Q23166440 Q23538640 Q23588622
P688
Q181394
USER
Does that nucleic acid sequence encodes medium chain degydrogenase/reductase, MDR family    lp_2677 and Probable glucose-1-phosphate adenylyltransferase    MAB_1352 ?
(Q23166440,P688,Q23538640) (Q23166440,P688,Q23588622)
action is_in
entity Q23166440
action intersection
action find_reverse
entity Q23538640
relation P688
action find_reverse
entity Q23588622
relation P688
['Q23166440', 'P688', 'Q23538640'] ['Q23166440', 'P688', 'Q23588622']
ASK WHERE { resource:Q23166440 property:P688 resource:Q23538640 . resource:Q23166440 property:P688 resource:Q23588622 }
dehydratase    SMa1408 medium chain degydrogenase/reductase, MDR family    lp_2677 Probable glucose-1-phosphate adenylyltransferase    MAB_1352
action is_in
entity dehydratase    SMa1408
action intersection
action find_reverse
entity medium chain degydrogenase/reductase, MDR family    lp_2677
relation encodes
action find_reverse
entity Probable glucose-1-phosphate adenylyltransferase    MAB_1352
relation encodes
['dehydratase    SMa1408', 'encodes', 'medium chain degydrogenase/reductase, MDR family    lp_2677'] ['dehydratase    SMa1408', 'encodes', 'Probable glucose-1-phosphate adenylyltransferase    MAB_1352']
ASK WHERE { resource:dehydratase____SMa1408 property:encodes resource:medium_chain_degydrogenase/reductase,_MDR_family____lp_2677 . resource:dehydratase____SMa1408 property:encodes resource:Probable_glucose-1-phosphate_adenylyltransferase____MAB_1352 }
[]
nutrient
SYSTEM
NO
(Q23166440,P688,Q23538640) (Q23166440,P688,Q23588622)
action is_in
entity Q23166440
action intersection
action find_reverse
entity Q23538640
relation P688
action find_reverse
entity Q23588622
relation P688
[ANSWER]
['Q23166440', 'P688', 'Q23538640'] ['Q23166440', 'P688', 'Q23588622']
ASK WHERE { resource:Q23166440 property:P688 resource:Q23538640 . resource:Q23166440 property:P688 resource:Q23588622 }
No
action is_in
entity dehydratase    SMa1408
action intersection
action find_reverse
entity medium chain degydrogenase/reductase, MDR family    lp_2677
relation encodes
action find_reverse
entity Probable glucose-1-phosphate adenylyltransferase    MAB_1352
relation encodes
['dehydratase    SMa1408', 'encodes', 'medium chain degydrogenase/reductase, MDR family    lp_2677'] ['dehydratase    SMa1408', 'encodes', 'Probable glucose-1-phosphate adenylyltransferase    MAB_1352']
ASK WHERE { resource:dehydratase____SMa1408 property:encodes resource:medium_chain_degydrogenase/reductase,_MDR_family____lp_2677 . resource:dehydratase____SMa1408 property:encodes resource:Probable_glucose-1-phosphate_adenylyltransferase____MAB_1352 }
[]