Simple Question (Direct)
Simple Question
Q27474105
P681
Q15989253
USER
Which is the part that is a component of chorismate pyruvate lyase    SDY_4535 ?
(Q27474105,P681,c(Q15989253))
action filter_type
action find
entity Q27474105
relation P681
type Q15989253
['Q27474105', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?q WHERE { resource:Q27474105 property:P681 ?q . ?q rdf:type ontology:Q15989253 }
chorismate pyruvate lyase    SDY_4535
action filter_type
action find
entity chorismate pyruvate lyase    SDY_4535
relation cell component
type part
['chorismate pyruvate lyase    SDY_4535', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?q WHERE { resource:chorismate_pyruvate_lyase____SDY_4535 property:cell_component ?q . ?q rdf:type ontology:part }
[]
part
Q79899
SYSTEM
cytoplasm
Q79899
(Q27474105,P681,c(Q15989253))
action filter_type
action find
entity Q27474105
relation P681
type Q15989253
[ANSWER] is the part that is a component of chorismate pyruvate lyase SDY_4535
['Q27474105', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?q WHERE { resource:Q27474105 property:P681 ?q . ?q rdf:type ontology:Q15989253 }
cytoplasm
Cytoplasm is the part that is a component of chorismate pyruvate lyase SDY_4535
cytoplasm
action filter_type
action find
entity chorismate pyruvate lyase    SDY_4535
relation cell component
type part
['chorismate pyruvate lyase    SDY_4535', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?q WHERE { resource:chorismate_pyruvate_lyase____SDY_4535 property:cell_component ?q . ?q rdf:type ontology:part }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q27474105
P703
Q631147
USER
Which taxon does chorismate pyruvate lyase    SDY_4535 belong to ?
(Q27474105,P703,c(Q631147))
action filter_type
action find
entity Q27474105
relation P703
type Q631147
['Q27474105', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?u WHERE { resource:Q27474105 property:P703 ?u . ?u rdf:type ontology:Q631147 }
chorismate pyruvate lyase    SDY_4535
action filter_type
action find
entity chorismate pyruvate lyase    SDY_4535
relation found in taxon
type infraspecific name
['chorismate pyruvate lyase    SDY_4535', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?u WHERE { resource:chorismate_pyruvate_lyase____SDY_4535 property:found_in_taxon ?u . ?u rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102940
SYSTEM
Shigella dysenteriae Sd197
Q21102940
(Q27474105,P703,c(Q631147))
action filter_type
action find
entity Q27474105
relation P703
type Q631147
Chorismate pyruvate lyase SDY_4535 belongs to [ANSWER]
['Q27474105', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?u WHERE { resource:Q27474105 property:P703 ?u . ?u rdf:type ontology:Q631147 }
Shigella dysenteriae Sd197
Chorismate pyruvate lyase SDY_4535 belongs to Shigella dysenteriae Sd197
Shigella dysenteriae Sd197
action filter_type
action find
entity chorismate pyruvate lyase    SDY_4535
relation found in taxon
type infraspecific name
['chorismate pyruvate lyase    SDY_4535', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?u WHERE { resource:chorismate_pyruvate_lyase____SDY_4535 property:found_in_taxon ?u . ?u rdf:type ontology:infraspecific_name }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q27474105
P688
Q863908
USER
Which nucleic acid sequence encodes chorismate pyruvate lyase    SDY_4535 ?
(c(Q863908),P688,Q27474105)
action filter_type
action find_reverse
entity Q27474105
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q27474105']
SELECT DISTINCT ?o WHERE { ?o property:P688 resource:Q27474105 . ?o rdf:type ontology:Q863908 }
chorismate pyruvate lyase    SDY_4535
action filter_type
action find_reverse
entity chorismate pyruvate lyase    SDY_4535
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'chorismate pyruvate lyase    SDY_4535']
SELECT DISTINCT ?o WHERE { ?o property:encodes resource:chorismate_pyruvate_lyase____SDY_4535 . ?o rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23136688
SYSTEM
chorismate pyruvate lyase    SDY_4535
Q23136688
(c(Q863908),P688,Q27474105)
action filter_type
action find_reverse
entity Q27474105
relation P688
type Q863908
Chorismate pyruvate lyase SDY 4535 encodes chorismate pyruvate lyase SDY_4535
[{'concept': 'Q863908'}, 'P688', 'Q27474105']
SELECT DISTINCT ?o WHERE { ?o property:P688 resource:Q27474105 . ?o rdf:type ontology:Q863908 }
chorismate pyruvate lyase    SDY_4535
Chorismate pyruvate lyase SDY 4535 encodes chorismate pyruvate lyase SDY_4535
chorismate pyruvate lyase    SDY_4535
action filter_type
action find_reverse
entity chorismate pyruvate lyase    SDY_4535
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'chorismate pyruvate lyase    SDY_4535']
SELECT DISTINCT ?o WHERE { ?o property:encodes resource:chorismate_pyruvate_lyase____SDY_4535 . ?o rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23136688
P702
Q181394
USER
What is encoded by that nucleic acid sequence ?
(c(Q181394),P702,Q23136688)
action filter_type
action find_reverse
entity Q23136688
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q23136688']
SELECT DISTINCT ?f WHERE { ?f property:P702 resource:Q23136688 . ?f rdf:type ontology:Q181394 }
chorismate pyruvate lyase    SDY_4535
action filter_type
action find_reverse
entity chorismate pyruvate lyase    SDY_4535
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'chorismate pyruvate lyase    SDY_4535']
SELECT DISTINCT ?f WHERE { ?f property:encoded_by resource:chorismate_pyruvate_lyase____SDY_4535 . ?f rdf:type ontology:nutrient }
[]
nutrient
Q27474105
SYSTEM
chorismate pyruvate lyase    SDY_4535
Q27474105
(c(Q181394),P702,Q23136688)
action filter_type
action find_reverse
entity Q23136688
relation P702
type Q181394
Chorismate pyruvate lyase SDY 4535 is encoded by that nucleic acid sequence
[{'concept': 'Q181394'}, 'P702', 'Q23136688']
SELECT DISTINCT ?f WHERE { ?f property:P702 resource:Q23136688 . ?f rdf:type ontology:Q181394 }
chorismate pyruvate lyase    SDY_4535
Chorismate pyruvate lyase SDY 4535 is encoded by that nucleic acid sequence
chorismate pyruvate lyase    SDY_4535
action filter_type
action find_reverse
entity chorismate pyruvate lyase    SDY_4535
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'chorismate pyruvate lyase    SDY_4535']
SELECT DISTINCT ?f WHERE { ?f property:encoded_by resource:chorismate_pyruvate_lyase____SDY_4535 . ?f rdf:type ontology:nutrient }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Single entity type
Q21114820
P682
Q2996394 Q181394
USER
How many biological processes are greater number of nutrients involved in than spermatid nucleus elongation ?
(c(Q181394),P682,c(Q2996394))
action count
action greater
action find_reverse_tuple_counts
relation P682
type Q2996394
type Q181394
action count
action filter_type
action find
entity Q21114820
relation P682
type Q2996394
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ( COUNT ( ?j ) AS ?m ) WHERE { { SELECT DISTINCT ?j ( COUNT ( ?b ) AS ?s ) WHERE { ?b property:P682 ?j . ?b rdf:type ontology:Q181394 . ?j rdf:type ontology:Q2996394 } GROUP BY ?j } . { SELECT DISTINCT ( COUNT ( ?u ) AS ?x ) WHERE { resource:Q21114820 property:P682 ?u . ?u rdf:type ontology:Q2996394 } } . FILTER ( ?s > ?x ) }
spermatid nucleus elongation
action count
action greater
action find_reverse_tuple_counts
relation biological process
type biological process
type nutrient
action count
action filter_type
action find
entity spermatid nucleus elongation
relation biological process
type biological process
[{'concept': 'nutrient'}, 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ( COUNT ( ?j ) AS ?m ) WHERE { { SELECT DISTINCT ?j ( COUNT ( ?b ) AS ?s ) WHERE { ?b property:biological_process ?j . ?b rdf:type ontology:nutrient . ?j rdf:type ontology:biological_process } GROUP BY ?j } . { SELECT DISTINCT ( COUNT ( ?u ) AS ?x ) WHERE { resource:spermatid_nucleus_elongation property:biological_process ?u . ?u rdf:type ontology:biological_process } } . FILTER ( ?s > ?x ) }
[]
biological process nutrient
SYSTEM
69
Q14860201 Q288322 Q14902079 Q14863388 Q14911711 Q22294585 Q14860196 Q14860198 Q14864005 Q518328 Q22269531 Q847556 Q14897640 Q208353 Q14865609 Q14876119 Q14877671 Q22272257 Q21097540 Q21103041 Q21111890 Q21101822 Q22271536 Q15314382 Q14914558 Q22294730 Q14331109 Q21149516 Q187640 Q21130714 Q2663023 Q189159 Q14818032 Q22299432 Q14863467 Q15320925 Q163261 Q1612119 Q22269715 Q22297692 Q21750263 Q21762806 Q333666 Q14820875 Q21106668 Q21104990 Q14863664 Q14914008 Q14914540 Q21758676 Q14864210 Q21106018 Q14904771 Q14819471 Q21108839 Q14863453 Q14882364 Q14819856 Q21104832 Q22289134 Q14863538 Q14819911 Q14599729 Q22284230 Q14851921 Q14876924 Q14864904 Q14645719 Q14873676
(c(Q181394),P682,c(Q2996394))
action count
action greater
action find_reverse_tuple_counts
relation P682
type Q2996394
type Q181394
action count
action filter_type
action find
entity Q21114820
relation P682
type Q2996394
[ANSWER]
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ( COUNT ( ?j ) AS ?m ) WHERE { { SELECT DISTINCT ?j ( COUNT ( ?b ) AS ?s ) WHERE { ?b property:P682 ?j . ?b rdf:type ontology:Q181394 . ?j rdf:type ontology:Q2996394 } GROUP BY ?j } . { SELECT DISTINCT ( COUNT ( ?u ) AS ?x ) WHERE { resource:Q21114820 property:P682 ?u . ?u rdf:type ontology:Q2996394 } } . FILTER ( ?s > ?x ) }
anatomical structure development autophagy T cell mediated cytotoxicity response to external stimulus male meiosis adaptation of signaling pathway by response to pheromone involved in conjugation with cellular fusion developmental growth anatomical structure formation involved in morphogenesis ovulation cycle methylation filamentous growth protein folding synaptic vesicle docking circadian rhythm myeloid cell homeostasis antigen processing and presentation cartilage condensation meiosis I DNA methylation involved in gamete generation protein unfolding synaptic vesicle priming response to redox state response to pheromone involved in conjugation with cellular fusion natural killer cell mediated cytotoxicity nitrogen compound metabolic process karyogamy involved in conjugation with cellular fusion receptor localization to synapse organic substance metabolic process cell adhesion catabolic process cytolysis cell growth cell proliferation nitrogen utilization immune system development locomotion involved in locomotory behavior acrosome reaction immune response budding cell bud growth spore germination FtsZ-dependent cytokinesis primary metabolic process abscission response to activity synaptic vesicle fusion to presynaptic active zone membrane spermatid nucleus differentiation neurotransmitter secretion biosynthetic process female meiotic division carbon utilization anatomical structure morphogenesis cell separation after cytokinesis sperm chromatin condensation leukocyte migration adhesion of symbiont to host leukocyte homeostasis killing of cells of other organism feeding behavior synaptic vesicle exocytosis cellular component organization pigmentation response to stress response to estrogen cell wall organization or biogenesis hormone metabolic process cellular metabolic process response to biotic stimulus locomotory behavior cell motility
69
action count
action greater
action find_reverse_tuple_counts
relation biological process
type biological process
type nutrient
action count
action filter_type
action find
entity spermatid nucleus elongation
relation biological process
type biological process
[{'concept': 'nutrient'}, 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ( COUNT ( ?j ) AS ?m ) WHERE { { SELECT DISTINCT ?j ( COUNT ( ?b ) AS ?s ) WHERE { ?b property:biological_process ?j . ?b rdf:type ontology:nutrient . ?j rdf:type ontology:biological_process } GROUP BY ?j } . { SELECT DISTINCT ( COUNT ( ?u ) AS ?x ) WHERE { resource:spermatid_nucleus_elongation property:biological_process ?u . ?u rdf:type ontology:biological_process } } . FILTER ( ?s > ?x ) }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Single entity type|Incomplete
Q21105147
P682
Q2996394 Q181394
USER
And how about single organism reproductive process?
(c(Q181394),P682,c(Q2996394))
action count
action greater
action find_reverse_tuple_counts
relation P682
type Q2996394
type Q181394
action count
action filter_type
action find
entity Q21105147
relation P682
type Q2996394
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ( COUNT ( ?o ) AS ?s ) WHERE { FILTER ( ?g > ?q ) . { SELECT DISTINCT ( COUNT ( ?f ) AS ?q ) WHERE { resource:Q21105147 property:P682 ?f . ?f rdf:type ontology:Q2996394 } } . { SELECT DISTINCT ?o ( COUNT ( ?i ) AS ?g ) WHERE { ?i property:P682 ?o . ?o rdf:type ontology:Q2996394 . ?i rdf:type ontology:Q181394 } GROUP BY ?o } }
single organism reproductive process
action count
action greater
action find_reverse_tuple_counts
relation biological process
type biological process
type nutrient
action count
action filter_type
action find
entity single organism reproductive process
relation biological process
type biological process
[{'concept': 'nutrient'}, 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ( COUNT ( ?o ) AS ?s ) WHERE { FILTER ( ?g > ?q ) . { SELECT DISTINCT ( COUNT ( ?f ) AS ?q ) WHERE { resource:single_organism_reproductive_process property:biological_process ?f . ?f rdf:type ontology:biological_process } } . { SELECT DISTINCT ?o ( COUNT ( ?i ) AS ?g ) WHERE { ?i property:biological_process ?o . ?o rdf:type ontology:biological_process . ?i rdf:type ontology:nutrient } GROUP BY ?o } }
[]
biological process nutrient
SYSTEM
89
Q14862258 Q14860201 Q288322 Q14902079 Q14863388 Q14904219 Q14911711 Q22271494 Q22294585 Q14860196 Q14860198 Q14864005 Q518328 Q22269531 Q847556 Q14897640 Q208353 Q14865609 Q21116174 Q14876119 Q14877671 Q22272257 Q21097540 Q14864099 Q21103041 Q21444598 Q21111890 Q21101822 Q14863654 Q22271536 Q15314382 Q14914558 Q22294730 Q14331109 Q21149516 Q187640 Q21130714 Q2663023 Q189159 Q14818032 Q22299432 Q14863467 Q15320925 Q163261 Q1612119 Q22269715 Q22297692 Q21750263 Q21762806 Q333666 Q21418091 Q14864443 Q14820875 Q21106668 Q21104990 Q14863664 Q14914008 Q21108563 Q14914540 Q21758676 Q22284328 Q21108938 Q21106266 Q14864210 Q14907898 Q21106018 Q22271479 Q22272219 Q14904772 Q14904771 Q14819471 Q21108839 Q14863453 Q14882364 Q14819856 Q21104832 Q22289134 Q14863538 Q14819911 Q14599729 Q22284230 Q14851921 Q21115817 Q14876924 Q14864904 Q14645719 Q14873676 Q21132115 Q21114820
(c(Q181394),P682,c(Q2996394))
action count
action greater
action find_reverse_tuple_counts
relation P682
type Q2996394
type Q181394
action count
action filter_type
action find
entity Q21105147
relation P682
type Q2996394
[ANSWER]
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ( COUNT ( ?o ) AS ?s ) WHERE { FILTER ( ?g > ?q ) . { SELECT DISTINCT ( COUNT ( ?f ) AS ?q ) WHERE { resource:Q21105147 property:P682 ?f . ?f rdf:type ontology:Q2996394 } } . { SELECT DISTINCT ?o ( COUNT ( ?i ) AS ?g ) WHERE { ?i property:P682 ?o . ?o rdf:type ontology:Q2996394 . ?i rdf:type ontology:Q181394 } GROUP BY ?o } }
dopamine uptake involved in synaptic transmission anatomical structure development autophagy T cell mediated cytotoxicity response to external stimulus developmental process involved in reproduction male meiosis detoxification of arsenic-containing substance adaptation of signaling pathway by response to pheromone involved in conjugation with cellular fusion developmental growth anatomical structure formation involved in morphogenesis ovulation cycle methylation filamentous growth protein folding synaptic vesicle docking circadian rhythm myeloid cell homeostasis synaptic vesicle targeting antigen processing and presentation cartilage condensation meiosis I DNA methylation involved in gamete generation ovulation cycle process protein unfolding positive regulation of flagellated sperm motility involved in capacitation synaptic vesicle priming response to redox state multicellular organismal reproductive process response to pheromone involved in conjugation with cellular fusion natural killer cell mediated cytotoxicity nitrogen compound metabolic process karyogamy involved in conjugation with cellular fusion receptor localization to synapse organic substance metabolic process cell adhesion catabolic process cytolysis cell growth cell proliferation nitrogen utilization immune system development locomotion involved in locomotory behavior acrosome reaction immune response budding cell bud growth spore germination FtsZ-dependent cytokinesis primary metabolic process abscission antibody-dependent cellular cytotoxicity response to inactivity response to activity synaptic vesicle fusion to presynaptic active zone membrane spermatid nucleus differentiation neurotransmitter secretion biosynthetic process cellular response to stimulus female meiotic division carbon utilization peptide mating pheromone maturation involved in conjugation with cellular fusion preantral ovarian follicle growth carbohydrate utilization anatomical structure morphogenesis response to other organism cell separation after cytokinesis mycothiol-dependent detoxification detection of stimulus spermatogenesis, exchange of chromosomal proteins sperm chromatin condensation leukocyte migration adhesion of symbiont to host leukocyte homeostasis killing of cells of other organism feeding behavior synaptic vesicle exocytosis cellular component organization pigmentation response to stress response to estrogen cell wall organization or biogenesis hormone metabolic process directional locomotion cellular metabolic process response to biotic stimulus locomotory behavior cell motility prevention of polyspermy spermatid nucleus elongation
89
action count
action greater
action find_reverse_tuple_counts
relation biological process
type biological process
type nutrient
action count
action filter_type
action find
entity single organism reproductive process
relation biological process
type biological process
[{'concept': 'nutrient'}, 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ( COUNT ( ?o ) AS ?s ) WHERE { FILTER ( ?g > ?q ) . { SELECT DISTINCT ( COUNT ( ?f ) AS ?q ) WHERE { resource:single_organism_reproductive_process property:biological_process ?f . ?f rdf:type ontology:biological_process } } . { SELECT DISTINCT ?o ( COUNT ( ?i ) AS ?g ) WHERE { ?i property:biological_process ?o . ?o rdf:type ontology:biological_process . ?i rdf:type ontology:nutrient } GROUP BY ?o } }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23477287 Q27474105
P702
Q863908
USER
Which nucleic acid sequences genes encode chorismate pyruvate lyase    SDY_4535 or Shikimate kinase    Pro_0128 ?
OR((Q27474105,P702,c(Q863908)), (Q23477287,P702,c(Q863908)))
action filter_type
action union
action find
entity Q27474105
relation P702
action find
entity Q23477287
relation P702
type Q863908
{'OR': [['Q27474105', 'P702', {'concept': 'Q863908'}], ['Q23477287', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?w WHERE { ?w rdf:type ontology:Q863908 . { { resource:Q27474105 property:P702 ?w } UNION { resource:Q23477287 property:P702 ?w } } }
Shikimate kinase    Pro_0128 chorismate pyruvate lyase    SDY_4535
action filter_type
action union
action find
entity chorismate pyruvate lyase    SDY_4535
relation encoded by
action find
entity Shikimate kinase    Pro_0128
relation encoded by
type nucleic acid sequence
{'OR': [['chorismate pyruvate lyase    SDY_4535', 'encoded by', {'concept': 'nucleic acid sequence'}], ['Shikimate kinase    Pro_0128', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?w WHERE { ?w rdf:type ontology:nucleic_acid_sequence . { { resource:chorismate_pyruvate_lyase____SDY_4535 property:encoded_by ?w } UNION { resource:Shikimate_kinase____Pro_0128 property:encoded_by ?w } } }
[]
nucleic acid sequence
Q23330843 Q23136688
SYSTEM
Shikimate kinase    Pro_0128, chorismate pyruvate lyase    SDY_4535
Q23330843 Q23136688
OR((Q27474105,P702,c(Q863908)), (Q23477287,P702,c(Q863908)))
action filter_type
action union
action find
entity Q27474105
relation P702
action find
entity Q23477287
relation P702
type Q863908
[ANSWERS]
{'OR': [['Q27474105', 'P702', {'concept': 'Q863908'}], ['Q23477287', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?w WHERE { ?w rdf:type ontology:Q863908 . { { resource:Q27474105 property:P702 ?w } UNION { resource:Q23477287 property:P702 ?w } } }
Shikimate kinase    Pro_0128 chorismate pyruvate lyase    SDY_4535
Shikimate kinase Pro 0128 and chorismate pyruvate lyase SDY 4535 encode chorismate pyruvate lyase SDY_4535 or Shikimate kinase Pro_0128
Shikimate kinase    Pro_0128 chorismate pyruvate lyase    SDY_4535
action filter_type
action union
action find
entity chorismate pyruvate lyase    SDY_4535
relation encoded by
action find
entity Shikimate kinase    Pro_0128
relation encoded by
type nucleic acid sequence
{'OR': [['chorismate pyruvate lyase    SDY_4535', 'encoded by', {'concept': 'nucleic acid sequence'}], ['Shikimate kinase    Pro_0128', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?w WHERE { ?w rdf:type ontology:nucleic_acid_sequence . { { resource:chorismate_pyruvate_lyase____SDY_4535 property:encoded_by ?w } UNION { resource:Shikimate_kinase____Pro_0128 property:encoded_by ?w } } }
[]