Simple Question (Direct)
Simple Question
Q21109387
P702
Q863908
USER
What is the gene that encodes Acyl-CoA synthetase family member 2, mitochondrial ?
(Q21109387,P702,c(Q863908))
action filter_type
action find
entity Q21109387
relation P702
type Q863908
['Q21109387', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?a WHERE { resource:Q21109387 property:P702 ?a . ?a rdf:type ontology:Q863908 }
Acyl-CoA synthetase family member 2, mitochondrial
action filter_type
action find
entity Acyl-CoA synthetase family member 2, mitochondrial
relation encoded by
type nucleic acid sequence
['Acyl-CoA synthetase family member 2, mitochondrial', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?a WHERE { resource:Acyl-CoA_synthetase_family_member_2,_mitochondrial property:encoded_by ?a . ?a rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18046656
SYSTEM
ACSF2
Q18046656
(Q21109387,P702,c(Q863908))
action filter_type
action find
entity Q21109387
relation P702
type Q863908
[ANSWER] , mitochondrial the gene that encodes Acyl-CoA synthetase family member 2 is
['Q21109387', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?a WHERE { resource:Q21109387 property:P702 ?a . ?a rdf:type ontology:Q863908 }
ACSF2
ACSF2 , mitochondrial the gene that encodes Acyl-CoA synthetase family member 2 is
ACSF2
action filter_type
action find
entity Acyl-CoA synthetase family member 2, mitochondrial
relation encoded by
type nucleic acid sequence
['Acyl-CoA synthetase family member 2, mitochondrial', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?a WHERE { resource:Acyl-CoA_synthetase_family_member_2,_mitochondrial property:encoded_by ?a . ?a rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18046656
P684
Q863908
USER
Which is the species that has that one as its orthologous gene ?
(c(Q863908),P684,Q18046656)
action filter_type
action find
entity Q18046656
relation P684
type Q863908
[{'concept': 'Q863908'}, 'P684', 'Q18046656']
SELECT DISTINCT ?r WHERE { resource:Q18046656 property:P684 ?r . ?r rdf:type ontology:Q863908 }
ACSF2
action filter_type
action find
entity ACSF2
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'ACSF2']
SELECT DISTINCT ?r WHERE { resource:ACSF2 property:ortholog ?r . ?r rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18300795
SYSTEM
Acsf2
Q18300795
(c(Q863908),P684,Q18046656)
action filter_type
action find
entity Q18046656
relation P684
type Q863908
[ANSWER] is the species that has that one as its orthologous gene
[{'concept': 'Q863908'}, 'P684', 'Q18046656']
SELECT DISTINCT ?r WHERE { resource:Q18046656 property:P684 ?r . ?r rdf:type ontology:Q863908 }
Acsf2
Acsf2 is the species that has that one as its orthologous gene
Acsf2
action filter_type
action find
entity ACSF2
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'ACSF2']
SELECT DISTINCT ?r WHERE { resource:ACSF2 property:ortholog ?r . ?r rdf:type ontology:nucleic_acid_sequence }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q181394 Q181394 Q79529
USER
How many nutrients do approximately 10 nutrients or chemical substances contact with ?
(c(Q181394)|c(Q79529),P129,c(Q181394))
action count
action approx
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
value 10
[[{'concept': 'Q181394'}, {'concept': 'Q79529'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?v ) AS ?k ) WHERE { { SELECT DISTINCT ( COUNT ( ?c ) AS ?h ) ?v WHERE { VALUES ( ?w ) { ( ontology:Q181394 ) ( ontology:Q79529 ) } . ?c rdf:type ?w } GROUP BY ?v } . FILTER ( ?h = 10 ) }
action count
action approx
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
value 10
[[{'concept': 'nutrient'}, {'concept': 'chemical substance'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?v ) AS ?k ) WHERE { { SELECT DISTINCT ( COUNT ( ?c ) AS ?h ) ?v WHERE { VALUES ( ?w ) { ( ontology:nutrient ) ( ontology:chemical_substance ) } . ?c rdf:type ?w } GROUP BY ?v } . FILTER ( ?h = 10 ) }
[]
nutrient nutrient chemical substance
SYSTEM
62
Q21115605 Q21110942 Q21116154 Q309513 Q308856 Q12746346 Q4847910 Q413209 Q21154358 Q5123372 Q21108624 Q21172390 Q1486720 Q1084878 Q14900999 Q21109365 Q15323278 Q21110867 Q4847900 Q4847907 Q416601 Q5512777 Q4734884 Q21116164 Q2844056 Q5773155 Q21115334 Q21173406 Q4859538 Q4734894 Q21110872 Q4734892 Q4734891 Q21131500 Q21132652 Q7673856 Q21115961 Q21115962 Q21115965 Q311568 Q3062781 Q12746120 Q11071075 Q5629167 Q21115815 Q21115816 Q21115819 Q7834290 Q21114585 Q21497939 Q21497937 Q21122435 Q5009781 Q21130911 Q21150595 Q15324694 Q21201294 Q7671477 Q21109359 Q21983336 Q15324415 Q2034004
(c(Q181394)|c(Q79529),P129,c(Q181394))
action count
action approx
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
value 10
[ANSWER]
[[{'concept': 'Q181394'}, {'concept': 'Q79529'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?v ) AS ?k ) WHERE { { SELECT DISTINCT ( COUNT ( ?c ) AS ?h ) ?v WHERE { VALUES ( ?w ) { ( ontology:Q181394 ) ( ontology:Q79529 ) } . ?c rdf:type ?w } GROUP BY ?v } . FILTER ( ?h = 10 ) }
Vascular endothelial growth factor receptor 1 G-protein coupled receptor 55 Adenosine receptor A3 Histamine H1 receptor D(4) dopamine receptor Nociceptin receptor Muscarinic acetylcholine receptor M2 Transient receptor potential cation channel subfamily V member 1 Histone deacetylase 3 Mu-type opioid receptor Platelet-derived growth factor receptor beta Vascular endothelial growth factor receptor 2 Glutamate receptor 3 Peroxisome proliferator-activated receptor gamma Kappa-type opioid receptor 5-hydroxytryptamine receptor 4 Transient receptor potential cation channel subfamily A member 1 D(1A) dopamine receptor Muscarinic acetylcholine receptor M1 Muscarinic acetylcholine receptor M4 Androgen receptor Gamma-aminobutyric acid receptor subunit alpha-4 Alpha-1A adrenergic receptor Adenosine receptor A2b Muscarinic acetylcholine receptor M3 Histone deacetylase 2 Delta-type opioid receptor Histone deacetylase 8 Metabotropic glutamate receptor 2 Alpha-2B adrenergic receptor D(3) dopamine receptor Alpha-2A adrenergic receptor Alpha-2C adrenergic receptor D(1B) dopamine receptor Glucose-dependent insulinotropic receptor Substance-P receptor Glutamate receptor 1 Glutamate receptor 2 Glutamate receptor 4 Histamine H2 receptor Adenosine receptor A1 Muscarinic acetylcholine receptor M5 Trace amine-associated receptor 1 Histone deacetylase 1 Glutamate receptor ionotropic, NMDA 2A Glutamate receptor ionotropic, NMDA 2B Glutamate receptor ionotropic, NMDA 2C Transient receptor potential cation channel subfamily A member 1 Gamma-aminobutyric acid receptor subunit alpha-6 5-hydroxytryptamine receptor 7 5-hydroxytryptamine receptor 5A Orexin receptor type 2 Receptor-type tyrosine-protein kinase FLT3 Glutamate receptor ionotropic, NMDA 2D Cannabinoid receptor 2 Transient receptor potential cation channel subfamily V member 3 Cannabinoid receptor 1 Transient receptor potential cation channel subfamily M member 2 5-hydroxytryptamine receptor 5A Histamine H3 receptor Transient receptor potential cation channel subfamily M member 8 D(2) dopamine receptor
62
action count
action approx
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
value 10
[[{'concept': 'nutrient'}, {'concept': 'chemical substance'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?v ) AS ?k ) WHERE { { SELECT DISTINCT ( COUNT ( ?c ) AS ?h ) ?v WHERE { VALUES ( ?w ) { ( ontology:nutrient ) ( ontology:chemical_substance ) } . ?c rdf:type ?w } GROUP BY ?v } . FILTER ( ?h = 10 ) }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18300795
P703
Q16521
USER
Where is that nucleic acid sequence found ?
action filter_type
action find
entity Q18300795
relation P703
type Q16521
SELECT DISTINCT ?l WHERE { ?l rdf:type ontology:Q16521 . resource:Q18300795 property:P703 ?l }
Acsf2
action filter_type
action find
entity Acsf2
relation found in taxon
type taxon
SELECT DISTINCT ?l WHERE { ?l rdf:type ontology:taxon . resource:Acsf2 property:found_in_taxon ?l }
[]
taxon
Q83310
SYSTEM
Mus musculus
Q83310
action filter_type
action find
entity Q18300795
relation P703
type Q16521
That nucleic acid sequence is found in [ANSWER]
SELECT DISTINCT ?l WHERE { ?l rdf:type ontology:Q16521 . resource:Q18300795 property:P703 ?l }
Mus musculus
That nucleic acid sequence is found in Mus musculus
Mus musculus
action filter_type
action find
entity Acsf2
relation found in taxon
type taxon
SELECT DISTINCT ?l WHERE { ?l rdf:type ontology:taxon . resource:Acsf2 property:found_in_taxon ?l }
[]
Logical Reasoning (All)
Logical|Intersection|Single_Relation
Q21987369 Q21109387
P681
Q15989253
USER
Which parts are the cell components of Acyl-CoA synthetase family member 2, mitochondrial and Serine/threonine-protein kinase PAK 7 ?
AND((Q21109387,P681,c(Q15989253)), (Q21987369,P681,c(Q15989253)))
action filter_type
action intersection
action find
entity Q21109387
relation P681
action find
entity Q21987369
relation P681
type Q15989253
{'AND': [['Q21109387', 'P681', {'concept': 'Q15989253'}], ['Q21987369', 'P681', {'concept': 'Q15989253'}]]}
SELECT DISTINCT ?w WHERE { ?w rdf:type ontology:Q15989253 . resource:Q21109387 property:P681 ?w . resource:Q21987369 property:P681 ?w }
Serine/threonine-protein kinase PAK 7 Acyl-CoA synthetase family member 2, mitochondrial
action filter_type
action intersection
action find
entity Acyl-CoA synthetase family member 2, mitochondrial
relation cell component
action find
entity Serine/threonine-protein kinase PAK 7
relation cell component
type part
{'AND': [['Acyl-CoA synthetase family member 2, mitochondrial', 'cell component', {'concept': 'part'}], ['Serine/threonine-protein kinase PAK 7', 'cell component', {'concept': 'part'}]]}
SELECT DISTINCT ?w WHERE { ?w rdf:type ontology:part . resource:Acyl-CoA_synthetase_family_member_2,_mitochondrial property:cell_component ?w . resource:Serine/threonine-protein_kinase_PAK_7 property:cell_component ?w }
[]
part
Q39572
SYSTEM
mitochondrion
Q39572
AND((Q21109387,P681,c(Q15989253)), (Q21987369,P681,c(Q15989253)))
action filter_type
action intersection
action find
entity Q21109387
relation P681
action find
entity Q21987369
relation P681
type Q15989253
The [ANSWER] is the cell components of Acyl-CoA synthetase family member 2, mitochondrial and Serine/threonine-protein kinase PAK 7
{'AND': [['Q21109387', 'P681', {'concept': 'Q15989253'}], ['Q21987369', 'P681', {'concept': 'Q15989253'}]]}
SELECT DISTINCT ?w WHERE { ?w rdf:type ontology:Q15989253 . resource:Q21109387 property:P681 ?w . resource:Q21987369 property:P681 ?w }
mitochondrion
The mitochondrion is the cell components of Acyl-CoA synthetase family member 2, mitochondrial and Serine/threonine-protein kinase PAK 7
mitochondrion
action filter_type
action intersection
action find
entity Acyl-CoA synthetase family member 2, mitochondrial
relation cell component
action find
entity Serine/threonine-protein kinase PAK 7
relation cell component
type part
{'AND': [['Acyl-CoA synthetase family member 2, mitochondrial', 'cell component', {'concept': 'part'}], ['Serine/threonine-protein kinase PAK 7', 'cell component', {'concept': 'part'}]]}
SELECT DISTINCT ?w WHERE { ?w rdf:type ontology:part . resource:Acyl-CoA_synthetase_family_member_2,_mitochondrial property:cell_component ?w . resource:Serine/threonine-protein_kinase_PAK_7 property:cell_component ?w }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21174396
P688
Q863908
USER
What is the nucleic acid sequence that is encoded by Zinc finger protein 654 ?
(c(Q863908),P688,Q21174396)
action filter_type
action find_reverse
entity Q21174396
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q21174396']
SELECT DISTINCT ?t WHERE { ?t property:P688 resource:Q21174396 . ?t rdf:type ontology:Q863908 }
Zinc finger protein 654
action filter_type
action find_reverse
entity Zinc finger protein 654
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Zinc finger protein 654']
SELECT DISTINCT ?t WHERE { ?t property:encodes resource:Zinc_finger_protein_654 . ?t rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18041722
SYSTEM
ZNF654
Q18041722
(c(Q863908),P688,Q21174396)
action filter_type
action find_reverse
entity Q21174396
relation P688
type Q863908
The nucleic acid sequence that is encoded by Zinc finger protein 654 is the [ANSWER]
[{'concept': 'Q863908'}, 'P688', 'Q21174396']
SELECT DISTINCT ?t WHERE { ?t property:P688 resource:Q21174396 . ?t rdf:type ontology:Q863908 }
ZNF654
The nucleic acid sequence that is encoded by Zinc finger protein 654 is the ZNF654
ZNF654
action filter_type
action find_reverse
entity Zinc finger protein 654
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Zinc finger protein 654']
SELECT DISTINCT ?t WHERE { ?t property:encodes resource:Zinc_finger_protein_654 . ?t rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|3 entities, all direct, 2 are query entities
Q18041722 Q27543498 Q18265231
P684
Q863908
USER
Does ZNF654 have Nbl1p YHR199C-A and Zfp654 as its orthologous gene ?
(Q18041722,P684,Q27543498) (Q18041722,P684,Q18265231)
action is_in
entity Q18041722
action intersection
action find_reverse
entity Q27543498
relation P684
action find_reverse
entity Q18265231
relation P684
['Q18041722', 'P684', 'Q27543498'] ['Q18041722', 'P684', 'Q18265231']
ASK WHERE { resource:Q18041722 property:P684 resource:Q27543498 . resource:Q18041722 property:P684 resource:Q18265231 }
ZNF654 Nbl1p YHR199C-A Zfp654
action is_in
entity ZNF654
action intersection
action find_reverse
entity Nbl1p YHR199C-A
relation ortholog
action find_reverse
entity Zfp654
relation ortholog
['ZNF654', 'ortholog', 'Nbl1p YHR199C-A'] ['ZNF654', 'ortholog', 'Zfp654']
ASK WHERE { resource:ZNF654 property:ortholog resource:Nbl1p_YHR199C-A . resource:ZNF654 property:ortholog resource:Zfp654 }
[]
nucleic acid sequence
SYSTEM
NO and YES respectively
(Q18041722,P684,Q27543498) (Q18041722,P684,Q18265231)
action is_in
entity Q18041722
action intersection
action find_reverse
entity Q27543498
relation P684
action find_reverse
entity Q18265231
relation P684
[ANSWER]
['Q18041722', 'P684', 'Q27543498'] ['Q18041722', 'P684', 'Q18265231']
ASK WHERE { resource:Q18041722 property:P684 resource:Q27543498 . resource:Q18041722 property:P684 resource:Q18265231 }
NO and YES respectively
action is_in
entity ZNF654
action intersection
action find_reverse
entity Nbl1p YHR199C-A
relation ortholog
action find_reverse
entity Zfp654
relation ortholog
['ZNF654', 'ortholog', 'Nbl1p YHR199C-A'] ['ZNF654', 'ortholog', 'Zfp654']
ASK WHERE { resource:ZNF654 property:ortholog resource:Nbl1p_YHR199C-A . resource:ZNF654 property:ortholog resource:Zfp654 }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q21109387 Q24773213
P681
Q15989253
USER
Is Suppressor of white apricot N-terminal domain the cell component of Acyl-CoA synthetase family member 2, mitochondrial ?
(Q21109387,P681,Q24773213)
action is_in
entity Q24773213
action find
entity Q21109387
relation P681
['Q21109387', 'P681', 'Q24773213']
ASK WHERE { resource:Q21109387 property:P681 resource:Q24773213 }
Acyl-CoA synthetase family member 2, mitochondrial Suppressor of white apricot N-terminal domain
action is_in
entity Suppressor of white apricot N-terminal domain
action find
entity Acyl-CoA synthetase family member 2, mitochondrial
relation cell component
['Acyl-CoA synthetase family member 2, mitochondrial', 'cell component', 'Suppressor of white apricot N-terminal domain']
ASK WHERE { resource:Acyl-CoA_synthetase_family_member_2,_mitochondrial property:cell_component resource:Suppressor_of_white_apricot_N-terminal_domain }
[]
part
SYSTEM
NO
(Q21109387,P681,Q24773213)
action is_in
entity Q24773213
action find
entity Q21109387
relation P681
[ANSWER]
['Q21109387', 'P681', 'Q24773213']
ASK WHERE { resource:Q21109387 property:P681 resource:Q24773213 }
No
action is_in
entity Suppressor of white apricot N-terminal domain
action find
entity Acyl-CoA synthetase family member 2, mitochondrial
relation cell component
['Acyl-CoA synthetase family member 2, mitochondrial', 'cell component', 'Suppressor of white apricot N-terminal domain']
ASK WHERE { resource:Acyl-CoA_synthetase_family_member_2,_mitochondrial property:cell_component resource:Suppressor_of_white_apricot_N-terminal_domain }
[]