Simple Question (Direct)
Simple Question
Q24121423
P703
Q631147
USER
Which infraspecific name is elongation factor G    BN117_0026 found in ?
(Q24121423,P703,c(Q631147))
action filter_type
action find
entity Q24121423
relation P703
type Q631147
['Q24121423', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?i WHERE { resource:Q24121423 property:P703 ?i . ?i rdf:type ontology:Q631147 }
elongation factor G    BN117_0026
action filter_type
action find
entity elongation factor G    BN117_0026
relation found in taxon
type infraspecific name
['elongation factor G    BN117_0026', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?i WHERE { resource:elongation_factor_G____BN117_0026 property:found_in_taxon ?i . ?i rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21064863
SYSTEM
Bordetella parapertussis Bpp5
Q21064863
(Q24121423,P703,c(Q631147))
action filter_type
action find
entity Q24121423
relation P703
type Q631147
[ANSWER] is elongation factor G BN117_0026 found in
['Q24121423', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?i WHERE { resource:Q24121423 property:P703 ?i . ?i rdf:type ontology:Q631147 }
Bordetella parapertussis Bpp5
Bordetella parapertussis Bpp5 is elongation factor G BN117_0026 found in
Bordetella parapertussis Bpp5
action filter_type
action find
entity elongation factor G    BN117_0026
relation found in taxon
type infraspecific name
['elongation factor G    BN117_0026', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?i WHERE { resource:elongation_factor_G____BN117_0026 property:found_in_taxon ?i . ?i rdf:type ontology:infraspecific_name }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Single entity type
Q14897640
P682
Q2996394 Q181394
USER
How many biological processes are a biological processes that more number of nutrients are involved in than synaptic vesicle docking ?
(c(Q181394),P682,c(Q2996394))
action count
action greater
action find_reverse_tuple_counts
relation P682
type Q2996394
type Q181394
action count
action filter_type
action find
entity Q14897640
relation P682
type Q2996394
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ( COUNT ( ?w ) AS ?p ) WHERE { FILTER ( ?l > ?o ) . { SELECT DISTINCT ( COUNT ( ?u ) AS ?o ) WHERE { resource:Q14897640 property:P682 ?u . ?u rdf:type ontology:Q2996394 } } . { SELECT DISTINCT ?w ( COUNT ( ?k ) AS ?l ) WHERE { ?w rdf:type ontology:Q2996394 . ?k rdf:type ontology:Q181394 . ?k property:P682 ?w } GROUP BY ?w } }
synaptic vesicle docking
action count
action greater
action find_reverse_tuple_counts
relation biological process
type biological process
type nutrient
action count
action filter_type
action find
entity synaptic vesicle docking
relation biological process
type biological process
[{'concept': 'nutrient'}, 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ( COUNT ( ?w ) AS ?p ) WHERE { FILTER ( ?l > ?o ) . { SELECT DISTINCT ( COUNT ( ?u ) AS ?o ) WHERE { resource:synaptic_vesicle_docking property:biological_process ?u . ?u rdf:type ontology:biological_process } } . { SELECT DISTINCT ?w ( COUNT ( ?k ) AS ?l ) WHERE { ?w rdf:type ontology:biological_process . ?k rdf:type ontology:nutrient . ?k property:biological_process ?w } GROUP BY ?w } }
[]
biological process nutrient
SYSTEM
57
Q14860201 Q288322 Q14902079 Q14863388 Q14911711 Q14860196 Q14860198 Q14864005 Q518328 Q22269531 Q847556 Q208353 Q14865609 Q14876119 Q14877671 Q22272257 Q21097540 Q21103041 Q21111890 Q21101822 Q15314382 Q14914558 Q14331109 Q21149516 Q187640 Q21130714 Q2663023 Q189159 Q14818032 Q22299432 Q163261 Q1612119 Q22297692 Q21750263 Q21762806 Q14820875 Q21106668 Q21104990 Q14863664 Q14914008 Q14914540 Q21758676 Q14864210 Q21106018 Q14819471 Q14882364 Q14819856 Q21104832 Q22289134 Q14863538 Q14819911 Q14599729 Q14851921 Q14876924 Q14864904 Q14645719 Q14873676
(c(Q181394),P682,c(Q2996394))
action count
action greater
action find_reverse_tuple_counts
relation P682
type Q2996394
type Q181394
action count
action filter_type
action find
entity Q14897640
relation P682
type Q2996394
[ANSWER]
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ( COUNT ( ?w ) AS ?p ) WHERE { FILTER ( ?l > ?o ) . { SELECT DISTINCT ( COUNT ( ?u ) AS ?o ) WHERE { resource:Q14897640 property:P682 ?u . ?u rdf:type ontology:Q2996394 } } . { SELECT DISTINCT ?w ( COUNT ( ?k ) AS ?l ) WHERE { ?w rdf:type ontology:Q2996394 . ?k rdf:type ontology:Q181394 . ?k property:P682 ?w } GROUP BY ?w } }
anatomical structure development autophagy T cell mediated cytotoxicity response to external stimulus male meiosis developmental growth anatomical structure formation involved in morphogenesis ovulation cycle methylation filamentous growth protein folding circadian rhythm myeloid cell homeostasis antigen processing and presentation cartilage condensation meiosis I DNA methylation involved in gamete generation protein unfolding synaptic vesicle priming response to redox state natural killer cell mediated cytotoxicity nitrogen compound metabolic process receptor localization to synapse organic substance metabolic process cell adhesion catabolic process cytolysis cell growth cell proliferation nitrogen utilization acrosome reaction immune response spore germination FtsZ-dependent cytokinesis primary metabolic process response to activity synaptic vesicle fusion to presynaptic active zone membrane spermatid nucleus differentiation neurotransmitter secretion biosynthetic process female meiotic division carbon utilization anatomical structure morphogenesis cell separation after cytokinesis leukocyte migration killing of cells of other organism feeding behavior synaptic vesicle exocytosis cellular component organization pigmentation response to stress response to estrogen hormone metabolic process cellular metabolic process response to biotic stimulus locomotory behavior cell motility
57
action count
action greater
action find_reverse_tuple_counts
relation biological process
type biological process
type nutrient
action count
action filter_type
action find
entity synaptic vesicle docking
relation biological process
type biological process
[{'concept': 'nutrient'}, 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ( COUNT ( ?w ) AS ?p ) WHERE { FILTER ( ?l > ?o ) . { SELECT DISTINCT ( COUNT ( ?u ) AS ?o ) WHERE { resource:synaptic_vesicle_docking property:biological_process ?u . ?u rdf:type ontology:biological_process } } . { SELECT DISTINCT ?w ( COUNT ( ?k ) AS ?l ) WHERE { ?w rdf:type ontology:biological_process . ?k rdf:type ontology:nutrient . ?k property:biological_process ?w } GROUP BY ?w } }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Single entity type|Incomplete
Q21107328
P682
Q2996394 Q181394
USER
And also tell me about development involved in symbiotic interaction?
(c(Q181394),P682,c(Q2996394))
action count
action greater
action find_reverse_tuple_counts
relation P682
type Q2996394
type Q181394
action count
action filter_type
action find
entity Q21107328
relation P682
type Q2996394
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ( COUNT ( ?x ) AS ?g ) WHERE { { SELECT DISTINCT ?x ( COUNT ( ?c ) AS ?k ) WHERE { ?c property:P682 ?x . ?x rdf:type ontology:Q2996394 . ?c rdf:type ontology:Q181394 } GROUP BY ?x } . { SELECT DISTINCT ( COUNT ( ?j ) AS ?s ) WHERE { ?j rdf:type ontology:Q2996394 . resource:Q21107328 property:P682 ?j } } . FILTER ( ?k > ?s ) }
development involved in symbiotic interaction
action count
action greater
action find_reverse_tuple_counts
relation biological process
type biological process
type nutrient
action count
action filter_type
action find
entity development involved in symbiotic interaction
relation biological process
type biological process
[{'concept': 'nutrient'}, 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ( COUNT ( ?x ) AS ?g ) WHERE { { SELECT DISTINCT ?x ( COUNT ( ?c ) AS ?k ) WHERE { ?c property:biological_process ?x . ?x rdf:type ontology:biological_process . ?c rdf:type ontology:nutrient } GROUP BY ?x } . { SELECT DISTINCT ( COUNT ( ?j ) AS ?s ) WHERE { ?j rdf:type ontology:biological_process . resource:development_involved_in_symbiotic_interaction property:biological_process ?j } } . FILTER ( ?k > ?s ) }
[]
biological process nutrient
SYSTEM
107
Q22294591 Q21172195 Q14862258 Q22295734 Q14860201 Q288322 Q14902079 Q14863388 Q14904219 Q14911711 Q22271494 Q22294585 Q14860196 Q14860198 Q14864005 Q22269626 Q518328 Q22269531 Q847556 Q14897640 Q208353 Q14865609 Q21116174 Q14876119 Q14877671 Q22272257 Q21097540 Q14864099 Q21103041 Q21444598 Q21136671 Q21111890 Q21101822 Q14863654 Q22271536 Q22279989 Q14865397 Q15314382 Q14865659 Q14914558 Q22294730 Q14331109 Q21149516 Q187640 Q21130714 Q2663023 Q189159 Q14818032 Q22299432 Q14863467 Q21105147 Q21123910 Q15320925 Q163261 Q1612119 Q22298156 Q22269715 Q21119405 Q22297692 Q21130764 Q21750263 Q21762806 Q333666 Q21418091 Q14864443 Q14820875 Q21124921 Q21106668 Q14904764 Q21104990 Q14863664 Q14914008 Q21108563 Q21111494 Q14914540 Q21758676 Q22284328 Q21108938 Q21106266 Q14864210 Q14907898 Q21106018 Q22271479 Q22272219 Q14904772 Q14904771 Q14819471 Q14912956 Q21108839 Q14863453 Q14882364 Q14819856 Q21104832 Q22289134 Q14863538 Q14819911 Q14599729 Q22284230 Q14851921 Q24459846 Q21115817 Q14876924 Q14864904 Q14645719 Q14873676 Q21132115 Q21114820
(c(Q181394),P682,c(Q2996394))
action count
action greater
action find_reverse_tuple_counts
relation P682
type Q2996394
type Q181394
action count
action filter_type
action find
entity Q21107328
relation P682
type Q2996394
[ANSWER]
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ( COUNT ( ?x ) AS ?g ) WHERE { { SELECT DISTINCT ?x ( COUNT ( ?c ) AS ?k ) WHERE { ?c property:P682 ?x . ?x rdf:type ontology:Q2996394 . ?c rdf:type ontology:Q181394 } GROUP BY ?x } . { SELECT DISTINCT ( COUNT ( ?j ) AS ?s ) WHERE { ?j rdf:type ontology:Q2996394 . resource:Q21107328 property:P682 ?j } } . FILTER ( ?k > ?s ) }
mitotic cell cycle arrest in response to pheromone positive regulation of growth factor dependent skeletal muscle satellite cell proliferation dopamine uptake involved in synaptic transmission leukocyte activation anatomical structure development autophagy T cell mediated cytotoxicity response to external stimulus developmental process involved in reproduction male meiosis detoxification of arsenic-containing substance adaptation of signaling pathway by response to pheromone involved in conjugation with cellular fusion developmental growth anatomical structure formation involved in morphogenesis ovulation cycle single-organism developmental process methylation filamentous growth protein folding synaptic vesicle docking circadian rhythm myeloid cell homeostasis synaptic vesicle targeting antigen processing and presentation cartilage condensation meiosis I DNA methylation involved in gamete generation ovulation cycle process protein unfolding positive regulation of flagellated sperm motility involved in capacitation female pronucleus assembly synaptic vesicle priming response to redox state multicellular organismal reproductive process response to pheromone involved in conjugation with cellular fusion gene conversion at mating-type locus, DNA double-strand break processing T cell selection natural killer cell mediated cytotoxicity tolerance induction nitrogen compound metabolic process karyogamy involved in conjugation with cellular fusion receptor localization to synapse organic substance metabolic process cell adhesion catabolic process cytolysis cell growth cell proliferation nitrogen utilization immune system development single organism reproductive process leukocyte mediated cytotoxicity locomotion involved in locomotory behavior acrosome reaction immune response maintenance of cell number budding cell bud growth single-organism behavior spore germination ultradian rhythm FtsZ-dependent cytokinesis primary metabolic process abscission antibody-dependent cellular cytotoxicity response to inactivity response to activity P granule organization synaptic vesicle fusion to presynaptic active zone membrane primary ovarian follicle growth spermatid nucleus differentiation neurotransmitter secretion biosynthetic process cellular response to stimulus activation of meiosis involved in egg activation female meiotic division carbon utilization peptide mating pheromone maturation involved in conjugation with cellular fusion preantral ovarian follicle growth carbohydrate utilization anatomical structure morphogenesis response to other organism cell separation after cytokinesis mycothiol-dependent detoxification detection of stimulus spermatogenesis, exchange of chromosomal proteins sperm chromatin condensation leukocyte migration ovarian cumulus expansion adhesion of symbiont to host leukocyte homeostasis killing of cells of other organism feeding behavior synaptic vesicle exocytosis cellular component organization pigmentation response to stress response to estrogen cell wall organization or biogenesis hormone metabolic process intermicrovillar adhesion directional locomotion cellular metabolic process response to biotic stimulus locomotory behavior cell motility prevention of polyspermy spermatid nucleus elongation
107
action count
action greater
action find_reverse_tuple_counts
relation biological process
type biological process
type nutrient
action count
action filter_type
action find
entity development involved in symbiotic interaction
relation biological process
type biological process
[{'concept': 'nutrient'}, 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ( COUNT ( ?x ) AS ?g ) WHERE { { SELECT DISTINCT ?x ( COUNT ( ?c ) AS ?k ) WHERE { ?c property:biological_process ?x . ?x rdf:type ontology:biological_process . ?c rdf:type ontology:nutrient } GROUP BY ?x } . { SELECT DISTINCT ( COUNT ( ?j ) AS ?s ) WHERE { ?j rdf:type ontology:biological_process . resource:development_involved_in_symbiotic_interaction property:biological_process ?j } } . FILTER ( ?k > ?s ) }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q24121423
P681
Q15989253
USER
Which is the cell component of elongation factor G    BN117_0026 ?
(Q24121423,P681,c(Q15989253))
action filter_type
action find
entity Q24121423
relation P681
type Q15989253
['Q24121423', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?h WHERE { ?h rdf:type ontology:Q15989253 . resource:Q24121423 property:P681 ?h }
elongation factor G    BN117_0026
action filter_type
action find
entity elongation factor G    BN117_0026
relation cell component
type part
['elongation factor G    BN117_0026', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?h WHERE { ?h rdf:type ontology:part . resource:elongation_factor_G____BN117_0026 property:cell_component ?h }
[]
part
Q79899
SYSTEM
cytoplasm
Q79899
(Q24121423,P681,c(Q15989253))
action filter_type
action find
entity Q24121423
relation P681
type Q15989253
[ANSWER] is the cell component of elongation factor G BN117_0026
['Q24121423', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?h WHERE { ?h rdf:type ontology:Q15989253 . resource:Q24121423 property:P681 ?h }
cytoplasm
Cytoplasm is the cell component of elongation factor G BN117_0026
cytoplasm
action filter_type
action find
entity elongation factor G    BN117_0026
relation cell component
type part
['elongation factor G    BN117_0026', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?h WHERE { ?h rdf:type ontology:part . resource:elongation_factor_G____BN117_0026 property:cell_component ?h }
[]
Logical Reasoning (All)
Logical|Intersection|Single_Relation|Incomplete
Q21982459 Q24121423
P681
Q15989253
USER
And also Kinesin-like protein KIF1B
AND((Q24121423,P681,c(Q15989253)), (Q21982459,P681,c(Q15989253)))
action filter_type
action intersection
action find
entity Q24121423
relation P681
action find
entity Q21982459
relation P681
type Q15989253
{'AND': [['Q24121423', 'P681', {'concept': 'Q15989253'}], ['Q21982459', 'P681', {'concept': 'Q15989253'}]]}
SELECT DISTINCT ?r WHERE { resource:Q24121423 property:P681 ?r . resource:Q21982459 property:P681 ?r . ?r rdf:type ontology:Q15989253 }
Kinesin-like protein KIF1B elongation factor G    BN117_0026
action filter_type
action intersection
action find
entity elongation factor G    BN117_0026
relation cell component
action find
entity Kinesin-like protein KIF1B
relation cell component
type part
{'AND': [['elongation factor G    BN117_0026', 'cell component', {'concept': 'part'}], ['Kinesin-like protein KIF1B', 'cell component', {'concept': 'part'}]]}
SELECT DISTINCT ?r WHERE { resource:elongation_factor_G____BN117_0026 property:cell_component ?r . resource:Kinesin-like_protein_KIF1B property:cell_component ?r . ?r rdf:type ontology:part }
[]
part
Q79899
SYSTEM
cytoplasm
Q79899
AND((Q24121423,P681,c(Q15989253)), (Q21982459,P681,c(Q15989253)))
action filter_type
action intersection
action find
entity Q24121423
relation P681
action find
entity Q21982459
relation P681
type Q15989253
[ANSWER]
{'AND': [['Q24121423', 'P681', {'concept': 'Q15989253'}], ['Q21982459', 'P681', {'concept': 'Q15989253'}]]}
SELECT DISTINCT ?r WHERE { resource:Q24121423 property:P681 ?r . resource:Q21982459 property:P681 ?r . ?r rdf:type ontology:Q15989253 }
cytoplasm
cytoplasm
action filter_type
action intersection
action find
entity elongation factor G    BN117_0026
relation cell component
action find
entity Kinesin-like protein KIF1B
relation cell component
type part
{'AND': [['elongation factor G    BN117_0026', 'cell component', {'concept': 'part'}], ['Kinesin-like protein KIF1B', 'cell component', {'concept': 'part'}]]}
SELECT DISTINCT ?r WHERE { resource:elongation_factor_G____BN117_0026 property:cell_component ?r . resource:Kinesin-like_protein_KIF1B property:cell_component ?r . ?r rdf:type ontology:part }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21982459
P688
Q863908
USER
What nucleic acid sequence encodes Kinesin-like protein KIF1B ?
(c(Q863908),P688,Q79899)
action filter_type
action find_reverse
entity Q21982459
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q79899']
SELECT DISTINCT ?l WHERE { ?l property:P688 resource:Q21982459 . ?l rdf:type ontology:Q863908 }
Kinesin-like protein KIF1B
action filter_type
action find_reverse
entity Kinesin-like protein KIF1B
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'cytoplasm']
SELECT DISTINCT ?l WHERE { ?l property:encodes resource:Kinesin-like_protein_KIF1B . ?l rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18251832
SYSTEM
Kif1b
Q18251832
(c(Q863908),P688,Q79899)
action filter_type
action find_reverse
entity Q21982459
relation P688
type Q863908
1 [ANSWER] encodes Kinesin-like protein KIF1B
[{'concept': 'Q863908'}, 'P688', 'Q79899']
SELECT DISTINCT ?l WHERE { ?l property:P688 resource:Q21982459 . ?l rdf:type ontology:Q863908 }
Kif1b
1 Kif1b encodes Kinesin-like protein KIF1B
Kif1b
action filter_type
action find_reverse
entity Kinesin-like protein KIF1B
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'cytoplasm']
SELECT DISTINCT ?l WHERE { ?l property:encodes resource:Kinesin-like_protein_KIF1B . ?l rdf:type ontology:nucleic_acid_sequence }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type
Q18251832
P702
Q181394
USER
How many nutrients do Kif1b encode ?
(c(Q181394),P702,Q18251832)
action count
action filter_type
action find_reverse
entity Q18251832
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q18251832']
SELECT DISTINCT ( COUNT ( ?c ) AS ?g ) WHERE { ?c property:P702 resource:Q18251832 . ?c rdf:type ontology:Q181394 }
Kif1b
action count
action filter_type
action find_reverse
entity Kif1b
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'Kif1b']
SELECT DISTINCT ( COUNT ( ?c ) AS ?g ) WHERE { ?c property:encoded_by resource:Kif1b . ?c rdf:type ontology:nutrient }
[]
nutrient
SYSTEM
1
Q21982459
(c(Q181394),P702,Q18251832)
action count
action filter_type
action find_reverse
entity Q18251832
relation P702
type Q181394
[ANSWER]
[{'concept': 'Q181394'}, 'P702', 'Q18251832']
SELECT DISTINCT ( COUNT ( ?c ) AS ?g ) WHERE { ?c property:P702 resource:Q18251832 . ?c rdf:type ontology:Q181394 }
Kinesin-like protein KIF1B
1
action count
action filter_type
action find_reverse
entity Kif1b
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'Kif1b']
SELECT DISTINCT ( COUNT ( ?c ) AS ?g ) WHERE { ?c property:encoded_by resource:Kif1b . ?c rdf:type ontology:nutrient }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18251832
P702
Q181394
USER
Which nutrient is encoded by that nucleic acid sequence ?
action filter_type
action find_reverse
entity Q18251832
relation P702
type Q181394
SELECT DISTINCT ?p WHERE { ?p property:P702 resource:Q18251832 . ?p rdf:type ontology:Q181394 }
Kif1b
action filter_type
action find_reverse
entity Kif1b
relation encoded by
type nutrient
SELECT DISTINCT ?p WHERE { ?p property:encoded_by resource:Kif1b . ?p rdf:type ontology:nutrient }
[]
nutrient
Q21982459
SYSTEM
Kinesin-like protein KIF1B
Q21982459
action filter_type
action find_reverse
entity Q18251832
relation P702
type Q181394
The [ANSWER] is encoded by that nucleic acid sequence
SELECT DISTINCT ?p WHERE { ?p property:P702 resource:Q18251832 . ?p rdf:type ontology:Q181394 }
Kinesin-like protein KIF1B
The Kinesin-like protein KIF1B is encoded by that nucleic acid sequence
Kinesin-like protein KIF1B
action filter_type
action find_reverse
entity Kif1b
relation encoded by
type nutrient
SELECT DISTINCT ?p WHERE { ?p property:encoded_by resource:Kif1b . ?p rdf:type ontology:nutrient }
[]