Simple Question (Direct)
Simple Question
Q23613753
P680
Q44424
USER
What represents the molecular function of isocitrate dehydrogenase    SRU_1973 ?
(Q23613753,P680,c(Q44424))
action filter_type
action find
entity Q23613753
relation P680
type Q44424
['Q23613753', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?b WHERE { resource:Q23613753 property:P680 ?b . ?b rdf:type ontology:Q44424 }
isocitrate dehydrogenase    SRU_1973
action filter_type
action find
entity isocitrate dehydrogenase    SRU_1973
relation molecular function
type chemical bond
['isocitrate dehydrogenase    SRU_1973', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?b WHERE { resource:isocitrate_dehydrogenase____SRU_1973 property:molecular_function ?b . ?b rdf:type ontology:chemical_bond }
[]
chemical bond
Q14860850 Q13667380
SYSTEM
magnesium ion binding, metal ion binding
Q14860850 Q13667380
(Q23613753,P680,c(Q44424))
action filter_type
action find
entity Q23613753
relation P680
type Q44424
[ANSWERS] represent the molecular function of isocitrate dehydrogenase SRU_1973
['Q23613753', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?b WHERE { resource:Q23613753 property:P680 ?b . ?b rdf:type ontology:Q44424 }
magnesium ion binding metal ion binding
Magnesium ion binding and metal ion binding represent the molecular function of isocitrate dehydrogenase SRU_1973
magnesium ion binding metal ion binding
action filter_type
action find
entity isocitrate dehydrogenase    SRU_1973
relation molecular function
type chemical bond
['isocitrate dehydrogenase    SRU_1973', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?b WHERE { resource:isocitrate_dehydrogenase____SRU_1973 property:molecular_function ?b . ?b rdf:type ontology:chemical_bond }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23613753
P703
Q631147
USER
Which taxon does isocitrate dehydrogenase    SRU_1973 belong to ?
(Q23613753,P703,c(Q631147))
action filter_type
action find
entity Q23613753
relation P703
type Q631147
['Q23613753', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?q WHERE { resource:Q23613753 property:P703 ?q . ?q rdf:type ontology:Q631147 }
isocitrate dehydrogenase    SRU_1973
action filter_type
action find
entity isocitrate dehydrogenase    SRU_1973
relation found in taxon
type infraspecific name
['isocitrate dehydrogenase    SRU_1973', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?q WHERE { resource:isocitrate_dehydrogenase____SRU_1973 property:found_in_taxon ?q . ?q rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21079559
SYSTEM
Salinibacter ruber DSM 13855
Q21079559
(Q23613753,P703,c(Q631147))
action filter_type
action find
entity Q23613753
relation P703
type Q631147
Isocitrate dehydrogenase SRU_1973 belongs to [ANSWER]
['Q23613753', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?q WHERE { resource:Q23613753 property:P703 ?q . ?q rdf:type ontology:Q631147 }
Salinibacter ruber DSM 13855
Isocitrate dehydrogenase SRU_1973 belongs to Salinibacter ruber DSM 13855
Salinibacter ruber DSM 13855
action filter_type
action find
entity isocitrate dehydrogenase    SRU_1973
relation found in taxon
type infraspecific name
['isocitrate dehydrogenase    SRU_1973', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?q WHERE { resource:isocitrate_dehydrogenase____SRU_1973 property:found_in_taxon ?q . ?q rdf:type ontology:infraspecific_name }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23613753
P682
Q1057
USER
Which metabolic processes are that nutrient involved in ?
(Q21079559,P682,c(Q1057))
action filter_type
action find
entity Q23613753
relation P682
type Q1057
['Q21079559', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?x WHERE { resource:Q23613753 property:P682 ?x . ?x rdf:type ontology:Q1057 }
isocitrate dehydrogenase    SRU_1973
action filter_type
action find
entity isocitrate dehydrogenase    SRU_1973
relation biological process
type metabolic process
['Salinibacter ruber DSM 13855', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?x WHERE { resource:isocitrate_dehydrogenase____SRU_1973 property:biological_process ?x . ?x rdf:type ontology:metabolic_process }
[]
metabolic process
Q14349764 Q133895
SYSTEM
oxidation-reduction process, tricarboxylic acid cycle
Q14349764 Q133895
(Q21079559,P682,c(Q1057))
action filter_type
action find
entity Q23613753
relation P682
type Q1057
That nutrient are the [ANSWERS]
['Q21079559', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?x WHERE { resource:Q23613753 property:P682 ?x . ?x rdf:type ontology:Q1057 }
oxidation-reduction process tricarboxylic acid cycle
That nutrient are the oxidation-reduction process and tricarboxylic acid cycle
oxidation-reduction process tricarboxylic acid cycle
action filter_type
action find
entity isocitrate dehydrogenase    SRU_1973
relation biological process
type metabolic process
['Salinibacter ruber DSM 13855', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?x WHERE { resource:isocitrate_dehydrogenase____SRU_1973 property:biological_process ?x . ?x rdf:type ontology:metabolic_process }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q22315781 Q23613753
P688
Q863908
USER
Which nucleic acid sequences encodes isocitrate dehydrogenase    SRU_1973 or curli fiber protein CsgE    PP_3474 ?
OR((c(Q863908),P688,Q23613753), (c(Q863908),P688,Q22315781))
action filter_type
action union
action find_reverse
entity Q23613753
relation P688
action find_reverse
entity Q22315781
relation P688
type Q863908
{'OR': [[{'concept': 'Q863908'}, 'P688', 'Q23613753'], [{'concept': 'Q863908'}, 'P688', 'Q22315781']]}
SELECT DISTINCT ?r WHERE { { { ?r property:P688 resource:Q23613753 } UNION { ?r property:P688 resource:Q22315781 } } . ?r rdf:type ontology:Q863908 }
curli fiber protein CsgE    PP_3474 isocitrate dehydrogenase    SRU_1973
action filter_type
action union
action find_reverse
entity isocitrate dehydrogenase    SRU_1973
relation encodes
action find_reverse
entity curli fiber protein CsgE    PP_3474
relation encodes
type nucleic acid sequence
{'OR': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'isocitrate dehydrogenase    SRU_1973'], [{'concept': 'nucleic acid sequence'}, 'encodes', 'curli fiber protein CsgE    PP_3474']]}
SELECT DISTINCT ?r WHERE { { { ?r property:encodes resource:isocitrate_dehydrogenase____SRU_1973 } UNION { ?r property:encodes resource:curli_fiber_protein_CsgE____PP_3474 } } . ?r rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q22309565 Q23389238
SYSTEM
curli fiber protein CsgE    PP_3474, isocitrate dehydrogenase    SRU_1973
Q22309565 Q23389238
OR((c(Q863908),P688,Q23613753), (c(Q863908),P688,Q22315781))
action filter_type
action union
action find_reverse
entity Q23613753
relation P688
action find_reverse
entity Q22315781
relation P688
type Q863908
[ANSWERS]
{'OR': [[{'concept': 'Q863908'}, 'P688', 'Q23613753'], [{'concept': 'Q863908'}, 'P688', 'Q22315781']]}
SELECT DISTINCT ?r WHERE { { { ?r property:P688 resource:Q23613753 } UNION { ?r property:P688 resource:Q22315781 } } . ?r rdf:type ontology:Q863908 }
curli fiber protein CsgE    PP_3474 isocitrate dehydrogenase    SRU_1973
Curli fiber protein CsgE PP 3474 and isocitrate dehydrogenase SRU 1973 encode isocitrate dehydrogenase SRU_1973 or curli fiber protein CsgE PP_3474
curli fiber protein CsgE    PP_3474 isocitrate dehydrogenase    SRU_1973
action filter_type
action union
action find_reverse
entity isocitrate dehydrogenase    SRU_1973
relation encodes
action find_reverse
entity curli fiber protein CsgE    PP_3474
relation encodes
type nucleic acid sequence
{'OR': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'isocitrate dehydrogenase    SRU_1973'], [{'concept': 'nucleic acid sequence'}, 'encodes', 'curli fiber protein CsgE    PP_3474']]}
SELECT DISTINCT ?r WHERE { { { ?r property:encodes resource:isocitrate_dehydrogenase____SRU_1973 } UNION { ?r property:encodes resource:curli_fiber_protein_CsgE____PP_3474 } } . ?r rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Mult. Entity|Indirect
Q22309565 Q23389238
P702
Q181394
USER
Which nutrients are encoded by curli fiber protein CsgE    PP_3474 and isocitrate dehydrogenase    SRU_1973 ?
(c(Q181394),P702,Q22309565) (c(Q181394),P702,Q23389238)
action union
action filter_type
action find_reverse
entity Q22309565
relation P702
type Q181394
action filter_type
action find_reverse
entity Q23389238
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q22309565'] [{'concept': 'Q181394'}, 'P702', 'Q23389238']
SELECT DISTINCT ?e WHERE { { ?e property:P702 resource:Q22309565 . ?e rdf:type ontology:Q181394 } UNION { ?e property:P702 resource:Q23389238 . ?e rdf:type ontology:Q181394 } }
curli fiber protein CsgE    PP_3474 isocitrate dehydrogenase    SRU_1973
action union
action filter_type
action find_reverse
entity curli fiber protein CsgE    PP_3474
relation encoded by
type nutrient
action filter_type
action find_reverse
entity isocitrate dehydrogenase    SRU_1973
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'curli fiber protein CsgE    PP_3474'] [{'concept': 'nutrient'}, 'encoded by', 'isocitrate dehydrogenase    SRU_1973']
SELECT DISTINCT ?e WHERE { { ?e property:encoded_by resource:curli_fiber_protein_CsgE____PP_3474 . ?e rdf:type ontology:nutrient } UNION { ?e property:encoded_by resource:isocitrate_dehydrogenase____SRU_1973 . ?e rdf:type ontology:nutrient } }
[]
nutrient
Q22315781 Q23613753
SYSTEM
curli fiber protein CsgE    PP_3474, isocitrate dehydrogenase    SRU_1973
Q22315781 Q23613753
(c(Q181394),P702,Q22309565) (c(Q181394),P702,Q23389238)
action union
action filter_type
action find_reverse
entity Q22309565
relation P702
type Q181394
action filter_type
action find_reverse
entity Q23389238
relation P702
type Q181394
[ANSWERS]
[{'concept': 'Q181394'}, 'P702', 'Q22309565'] [{'concept': 'Q181394'}, 'P702', 'Q23389238']
SELECT DISTINCT ?e WHERE { { ?e property:P702 resource:Q22309565 . ?e rdf:type ontology:Q181394 } UNION { ?e property:P702 resource:Q23389238 . ?e rdf:type ontology:Q181394 } }
curli fiber protein CsgE    PP_3474 isocitrate dehydrogenase    SRU_1973
Curli fiber protein CsgE PP 3474 and isocitrate dehydrogenase SRU 1973 are encoded by curli fiber protein CsgE PP_3474 and isocitrate dehydrogenase SRU_1973
curli fiber protein CsgE    PP_3474 isocitrate dehydrogenase    SRU_1973
action union
action filter_type
action find_reverse
entity curli fiber protein CsgE    PP_3474
relation encoded by
type nutrient
action filter_type
action find_reverse
entity isocitrate dehydrogenase    SRU_1973
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'curli fiber protein CsgE    PP_3474'] [{'concept': 'nutrient'}, 'encoded by', 'isocitrate dehydrogenase    SRU_1973']
SELECT DISTINCT ?e WHERE { { ?e property:encoded_by resource:curli_fiber_protein_CsgE____PP_3474 . ?e rdf:type ontology:nutrient } UNION { ?e property:encoded_by resource:isocitrate_dehydrogenase____SRU_1973 . ?e rdf:type ontology:nutrient } }
[]
Simple Question (Coreferenced)
Simple Question|Mult. Entity
Q22315781 Q23613753
P688
Q863908
USER
Which nucleic acid sequences encodes those nutrients ?
(c(Q863908),P688,Q22315781) (c(Q863908),P688,Q23613753)
action filter_type
action find_reverse
entity prev_answer
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q22315781'] [{'concept': 'Q863908'}, 'P688', 'Q23613753']
SELECT DISTINCT ?k WHERE { ?k rdf:type ontology:Q863908 . ?k property:P688 ?f . VALUES ( ?f ) { ( resource:Q22315781 ) ( resource:Q23613753 ) } }
curli fiber protein CsgE    PP_3474 isocitrate dehydrogenase    SRU_1973
action filter_type
action find_reverse
entity prev_answer
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'curli fiber protein CsgE    PP_3474'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'isocitrate dehydrogenase    SRU_1973']
SELECT DISTINCT ?k WHERE { ?k rdf:type ontology:nucleic_acid_sequence . ?k property:encodes ?f . VALUES ( ?f ) { ( resource:curli_fiber_protein_CsgE____PP_3474 ) ( resource:isocitrate_dehydrogenase____SRU_1973 ) } }
[]
nucleic acid sequence
Q22309565 Q23389238
SYSTEM
curli fiber protein CsgE    PP_3474, isocitrate dehydrogenase    SRU_1973
Q22309565 Q23389238
(c(Q863908),P688,Q22315781) (c(Q863908),P688,Q23613753)
action filter_type
action find_reverse
entity prev_answer
relation P688
type Q863908
[ANSWERS]
[{'concept': 'Q863908'}, 'P688', 'Q22315781'] [{'concept': 'Q863908'}, 'P688', 'Q23613753']
SELECT DISTINCT ?k WHERE { ?k rdf:type ontology:Q863908 . ?k property:P688 ?f . VALUES ( ?f ) { ( resource:Q22315781 ) ( resource:Q23613753 ) } }
curli fiber protein CsgE    PP_3474 isocitrate dehydrogenase    SRU_1973
Curli fiber protein CsgE PP 3474 and isocitrate dehydrogenase SRU 1973 encode those nutrients
curli fiber protein CsgE    PP_3474 isocitrate dehydrogenase    SRU_1973
action filter_type
action find_reverse
entity prev_answer
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'curli fiber protein CsgE    PP_3474'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'isocitrate dehydrogenase    SRU_1973']
SELECT DISTINCT ?k WHERE { ?k rdf:type ontology:nucleic_acid_sequence . ?k property:encodes ?f . VALUES ( ?f ) { ( resource:curli_fiber_protein_CsgE____PP_3474 ) ( resource:isocitrate_dehydrogenase____SRU_1973 ) } }
[]