Simple Question (Direct)
Simple Question
Q21112236
P681
Q15989253
USER
Which part is a component of DnaJ homolog subfamily C member 10 ?
(Q21112236,P681,c(Q15989253))
action filter_type
action find
entity Q21112236
relation P681
type Q15989253
['Q21112236', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?j WHERE { resource:Q21112236 property:P681 ?j . ?j rdf:type ontology:Q15989253 }
DnaJ homolog subfamily C member 10
action filter_type
action find
entity DnaJ homolog subfamily C member 10
relation cell component
type part
['DnaJ homolog subfamily C member 10', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?j WHERE { resource:DnaJ_homolog_subfamily_C_member_10 property:cell_component ?j . ?j rdf:type ontology:part }
[]
part
Q14349455
SYSTEM
membrane
Q14349455
(Q21112236,P681,c(Q15989253))
action filter_type
action find
entity Q21112236
relation P681
type Q15989253
The [ANSWER] is a component of DnaJ homolog subfamily C member 10
['Q21112236', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?j WHERE { resource:Q21112236 property:P681 ?j . ?j rdf:type ontology:Q15989253 }
membrane
The membrane is a component of DnaJ homolog subfamily C member 10
membrane
action filter_type
action find
entity DnaJ homolog subfamily C member 10
relation cell component
type part
['DnaJ homolog subfamily C member 10', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?j WHERE { resource:DnaJ_homolog_subfamily_C_member_10 property:cell_component ?j . ?j rdf:type ontology:part }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21112236
P702
Q863908
USER
What is the gene that encodes that nutrient ?
(Q14349455,P702,c(Q863908))
action filter_type
action find
entity Q21112236
relation P702
type Q863908
['Q14349455', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?n WHERE { resource:Q21112236 property:P702 ?n . ?n rdf:type ontology:Q863908 }
DnaJ homolog subfamily C member 10
action filter_type
action find
entity DnaJ homolog subfamily C member 10
relation encoded by
type nucleic acid sequence
['membrane', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?n WHERE { resource:DnaJ_homolog_subfamily_C_member_10 property:encoded_by ?n . ?n rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18040995
SYSTEM
DNAJC10
Q18040995
(Q14349455,P702,c(Q863908))
action filter_type
action find
entity Q21112236
relation P702
type Q863908
The gene that encodes that nutrient is a [ANSWER]
['Q14349455', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?n WHERE { resource:Q21112236 property:P702 ?n . ?n rdf:type ontology:Q863908 }
DNAJC10
The gene that encodes that nutrient is a DNAJC10
DNAJC10
action filter_type
action find
entity DnaJ homolog subfamily C member 10
relation encoded by
type nucleic acid sequence
['membrane', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?n WHERE { resource:DnaJ_homolog_subfamily_C_member_10 property:encoded_by ?n . ?n rdf:type ontology:nucleic_acid_sequence }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q8386 Q181394 Q181394
USER
How many nutrients interacts with around 24 drugs or nutrients ?
(c(Q181394),P129,c(Q8386)|c(Q181394))
action count
action approx
action union
action find_tuple_counts
relation P129
type Q181394
type Q8386
action find_tuple_counts
relation P129
type Q181394
type Q181394
value 24
[{'concept': 'Q181394'}, 'P129', [{'concept': 'Q8386'}, {'concept': 'Q181394'}]]
SELECT DISTINCT ( COUNT ( ?h ) AS ?p ) WHERE { { SELECT DISTINCT ( COUNT ( ?y ) AS ?f ) ?h WHERE { VALUES ( ?g ) { ( ontology:Q8386 ) ( ontology:Q181394 ) } . ?y rdf:type ?g } GROUP BY ?h } . FILTER ( ?f = 24 ) }
action count
action approx
action union
action find_tuple_counts
relation physically interacts with
type nutrient
type drug
action find_tuple_counts
relation physically interacts with
type nutrient
type nutrient
value 24
[{'concept': 'nutrient'}, 'physically interacts with', [{'concept': 'drug'}, {'concept': 'nutrient'}]]
SELECT DISTINCT ( COUNT ( ?h ) AS ?p ) WHERE { { SELECT DISTINCT ( COUNT ( ?y ) AS ?f ) ?h WHERE { VALUES ( ?g ) { ( ontology:drug ) ( ontology:nutrient ) } . ?y rdf:type ?g } GROUP BY ?h } . FILTER ( ?f = 24 ) }
[]
drug nutrient nutrient
SYSTEM
18
Q7050954 Q308856 Q5123372 Q410142 Q288797 Q287958 Q4639596 Q4734884 Q4734887 Q21115051 Q415364 Q21109355 Q4734894 Q21110872 Q4734892 Q4734891 Q21115046 Q21109363
(c(Q181394),P129,c(Q8386)|c(Q181394))
action count
action approx
action union
action find_tuple_counts
relation P129
type Q181394
type Q8386
action find_tuple_counts
relation P129
type Q181394
type Q181394
value 24
[ANSWER]
[{'concept': 'Q181394'}, 'P129', [{'concept': 'Q8386'}, {'concept': 'Q181394'}]]
SELECT DISTINCT ( COUNT ( ?h ) AS ?p ) WHERE { { SELECT DISTINCT ( COUNT ( ?y ) AS ?f ) ?h WHERE { VALUES ( ?g ) { ( ontology:Q8386 ) ( ontology:Q181394 ) } . ?y rdf:type ?g } GROUP BY ?h } . FILTER ( ?f = 24 ) }
Sodium-dependent noradrenaline transporter D(4) dopamine receptor Mu-type opioid receptor Sodium-dependent serotonin transporter 5-hydroxytryptamine receptor 1B Beta-1 adrenergic receptor 5-hydroxytryptamine receptor 2B Alpha-1A adrenergic receptor Alpha-1D adrenergic receptor 5-hydroxytryptamine receptor 1E Prostaglandin G/H synthase 2 5-hydroxytryptamine receptor 7 Alpha-2B adrenergic receptor D(3) dopamine receptor Alpha-2A adrenergic receptor Alpha-2C adrenergic receptor 5-hydroxytryptamine receptor 1D 5-hydroxytryptamine receptor 6
18
action count
action approx
action union
action find_tuple_counts
relation physically interacts with
type nutrient
type drug
action find_tuple_counts
relation physically interacts with
type nutrient
type nutrient
value 24
[{'concept': 'nutrient'}, 'physically interacts with', [{'concept': 'drug'}, {'concept': 'nutrient'}]]
SELECT DISTINCT ( COUNT ( ?h ) AS ?p ) WHERE { { SELECT DISTINCT ( COUNT ( ?y ) AS ?f ) ?h WHERE { VALUES ( ?g ) { ( ontology:drug ) ( ontology:nutrient ) } . ?y rdf:type ?g } GROUP BY ?h } . FILTER ( ?f = 24 ) }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q18040995
P684
Q863908
USER
Which nucleic acid sequence is an orthologous gene for DNAJC10 ?
(Q18040995,P684,c(Q863908))
action filter_type
action find
entity Q18040995
relation P684
type Q863908
['Q18040995', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?o WHERE { resource:Q18040995 property:P684 ?o . ?o rdf:type ontology:Q863908 }
DNAJC10
action filter_type
action find
entity DNAJC10
relation ortholog
type nucleic acid sequence
['DNAJC10', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?o WHERE { resource:DNAJC10 property:ortholog ?o . ?o rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18262119
SYSTEM
Dnajc10
Q18262119
(Q18040995,P684,c(Q863908))
action filter_type
action find
entity Q18040995
relation P684
type Q863908
[ANSWER] is an orthologous gene for DNAJC10
['Q18040995', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?o WHERE { resource:Q18040995 property:P684 ?o . ?o rdf:type ontology:Q863908 }
Dnajc10
Dnajc10 is an orthologous gene for DNAJC10
Dnajc10
action filter_type
action find
entity DNAJC10
relation ortholog
type nucleic acid sequence
['DNAJC10', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?o WHERE { resource:DNAJC10 property:ortholog ?o . ?o rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q18262119 Q27763235
P702
Q181394
USER
Is hypothetical protein    TM1577 the gene that is encoded by that nucleic acid sequence ?
(Q27763235,P702,Q18262119)
action is_in
entity Q27763235
action find
entity Q18262119
relation P702
['Q27763235', 'P702', 'Q18262119']
ASK WHERE { resource:Q18262119 property:P702 resource:Q27763235 }
Dnajc10 hypothetical protein    TM1577
action is_in
entity hypothetical protein    TM1577
action find
entity Dnajc10
relation encoded by
['hypothetical protein    TM1577', 'encoded by', 'Dnajc10']
ASK WHERE { resource:Dnajc10 property:encoded_by resource:hypothetical_protein____TM1577 }
[]
nutrient
SYSTEM
NO
(Q27763235,P702,Q18262119)
action is_in
entity Q27763235
action find
entity Q18262119
relation P702
[ANSWER]
['Q27763235', 'P702', 'Q18262119']
ASK WHERE { resource:Q18262119 property:P702 resource:Q27763235 }
No
action is_in
entity hypothetical protein    TM1577
action find
entity Dnajc10
relation encoded by
['hypothetical protein    TM1577', 'encoded by', 'Dnajc10']
ASK WHERE { resource:Dnajc10 property:encoded_by resource:hypothetical_protein____TM1577 }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18262119
P688
Q181394
USER
What is encoded by that nucleic acid sequence ?
action filter_type
action find
entity Q18262119
relation P688
type Q181394
SELECT DISTINCT ?p WHERE { resource:Q18262119 property:P688 ?p . ?p rdf:type ontology:Q181394 }
Dnajc10
action filter_type
action find
entity Dnajc10
relation encodes
type nutrient
SELECT DISTINCT ?p WHERE { resource:Dnajc10 property:encodes ?p . ?p rdf:type ontology:nutrient }
[]
nutrient
Q21984433
SYSTEM
DnaJ homolog subfamily C member 10
Q21984433
action filter_type
action find
entity Q18262119
relation P688
type Q181394
The [ANSWER] is encoded by that nucleic acid sequence
SELECT DISTINCT ?p WHERE { resource:Q18262119 property:P688 ?p . ?p rdf:type ontology:Q181394 }
DnaJ homolog subfamily C member 10
The DnaJ homolog subfamily C member 10 is encoded by that nucleic acid sequence
DnaJ homolog subfamily C member 10
action filter_type
action find
entity Dnajc10
relation encodes
type nutrient
SELECT DISTINCT ?p WHERE { resource:Dnajc10 property:encodes ?p . ?p rdf:type ontology:nutrient }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q24100907 Q21112236
P681
Q5058355
USER
Which cellular components are the cell components of DnaJ homolog subfamily C member 10 or ribonuclease BN    XCC3819 ?
OR((Q21112236,P681,c(Q5058355)), (Q24100907,P681,c(Q5058355)))
action filter_type
action union
action find
entity Q21112236
relation P681
action find
entity Q24100907
relation P681
type Q5058355
{'OR': [['Q21112236', 'P681', {'concept': 'Q5058355'}], ['Q24100907', 'P681', {'concept': 'Q5058355'}]]}
SELECT DISTINCT ?k WHERE { { { resource:Q24100907 property:P681 ?k } UNION { resource:Q21112236 property:P681 ?k } } . ?k rdf:type ontology:Q5058355 }
ribonuclease BN    XCC3819 DnaJ homolog subfamily C member 10
action filter_type
action union
action find
entity DnaJ homolog subfamily C member 10
relation cell component
action find
entity ribonuclease BN    XCC3819
relation cell component
type cellular component
{'OR': [['DnaJ homolog subfamily C member 10', 'cell component', {'concept': 'cellular component'}], ['ribonuclease BN    XCC3819', 'cell component', {'concept': 'cellular component'}]]}
SELECT DISTINCT ?k WHERE { { { resource:ribonuclease_BN____XCC3819 property:cell_component ?k } UNION { resource:DnaJ_homolog_subfamily_C_member_10 property:cell_component ?k } } . ?k rdf:type ontology:cellular_component }
[]
cellular component
Q79927 Q29548
SYSTEM
endoplasmic reticulum, plasma membrane
Q79927 Q29548
OR((Q21112236,P681,c(Q5058355)), (Q24100907,P681,c(Q5058355)))
action filter_type
action union
action find
entity Q21112236
relation P681
action find
entity Q24100907
relation P681
type Q5058355
The [ANSWERS] are the cell components of DnaJ homolog subfamily C member 10 or ribonuclease BN XCC3819
{'OR': [['Q21112236', 'P681', {'concept': 'Q5058355'}], ['Q24100907', 'P681', {'concept': 'Q5058355'}]]}
SELECT DISTINCT ?k WHERE { { { resource:Q24100907 property:P681 ?k } UNION { resource:Q21112236 property:P681 ?k } } . ?k rdf:type ontology:Q5058355 }
endoplasmic reticulum plasma membrane
The endoplasmic reticulum and plasma membrane are the cell components of DnaJ homolog subfamily C member 10 or ribonuclease BN XCC3819
endoplasmic reticulum plasma membrane
action filter_type
action union
action find
entity DnaJ homolog subfamily C member 10
relation cell component
action find
entity ribonuclease BN    XCC3819
relation cell component
type cellular component
{'OR': [['DnaJ homolog subfamily C member 10', 'cell component', {'concept': 'cellular component'}], ['ribonuclease BN    XCC3819', 'cell component', {'concept': 'cellular component'}]]}
SELECT DISTINCT ?k WHERE { { { resource:ribonuclease_BN____XCC3819 property:cell_component ?k } UNION { resource:DnaJ_homolog_subfamily_C_member_10 property:cell_component ?k } } . ?k rdf:type ontology:cellular_component }
[]
Verification (Boolean) (All)
Verification|one entity, multiple entities (as object) referred indirectly
Q21989154
P681
Q181394
USER
Are those ones a cell component of Seizure protein 6 ?
(Q21989154,P681,Q79927) (Q21989154,P681,Q29548)
action is_in
entity prev_answer
action find
entity Q21989154
relation P681
['Q21989154', 'P681', 'Q79927'] ['Q21989154', 'P681', 'Q29548']
ASK WHERE { resource:Q21989154 property:P681 ?p . VALUES ( ?p ) { ( resource:Q79927 ) ( resource:Q29548 ) } }
Seizure protein 6
action is_in
entity prev_answer
action find
entity Seizure protein 6
relation cell component
['Seizure protein 6', 'cell component', 'endoplasmic reticulum'] ['Seizure protein 6', 'cell component', 'plasma membrane']
ASK WHERE { resource:Seizure_protein_6 property:cell_component ?p . VALUES ( ?p ) { ( resource:endoplasmic_reticulum ) ( resource:plasma_membrane ) } }
[]
nutrient
SYSTEM
YES
(Q21989154,P681,Q79927) (Q21989154,P681,Q29548)
action is_in
entity prev_answer
action find
entity Q21989154
relation P681
[ANSWER]
['Q21989154', 'P681', 'Q79927'] ['Q21989154', 'P681', 'Q29548']
ASK WHERE { resource:Q21989154 property:P681 ?p . VALUES ( ?p ) { ( resource:Q79927 ) ( resource:Q29548 ) } }
Yes
action is_in
entity prev_answer
action find
entity Seizure protein 6
relation cell component
['Seizure protein 6', 'cell component', 'endoplasmic reticulum'] ['Seizure protein 6', 'cell component', 'plasma membrane']
ASK WHERE { resource:Seizure_protein_6 property:cell_component ?p . VALUES ( ?p ) { ( resource:endoplasmic_reticulum ) ( resource:plasma_membrane ) } }
[]
Quantitative Reasoning (All)
Quantitative|Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q181394 Q8386 Q181394
USER
Which nutrients do around 13 drugs and nutrients contact with ?
(c(Q8386)|c(Q181394),P129,c(Q181394))
action approx
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
value 13
[[{'concept': 'Q8386'}, {'concept': 'Q181394'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?l WHERE { FILTER ( ?y = 13 ) . { SELECT DISTINCT ( COUNT ( ?f ) AS ?y ) ?l WHERE { VALUES ( ?h ) { ( ontology:Q8386 ) ( ontology:Q181394 ) } . ?f rdf:type ?h } GROUP BY ?l } }
action approx
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
value 13
[[{'concept': 'drug'}, {'concept': 'nutrient'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?l WHERE { FILTER ( ?y = 13 ) . { SELECT DISTINCT ( COUNT ( ?f ) AS ?y ) ?l WHERE { VALUES ( ?h ) { ( ontology:drug ) ( ontology:nutrient ) } . ?f rdf:type ?h } GROUP BY ?l } }
[]
nutrient drug nutrient
Q416601 Q21110867 Q8083989
SYSTEM
Androgen receptor, D(1A) dopamine receptor, Kappa-type opioid receptor
Q4847910 Q2271947 Q2663095 Q21497881 Q21173164 Q21172390 Q21126810 Q21110867 Q4847900 Q4847907 Q21116946 Q416601 Q5401858 Q4734886 Q22676679 Q2844056 Q21115334 Q21115052 Q21131500 Q4897175 Q21132915 Q8083989 Q21497878 Q21108125 Q21497939 Q3454531
(c(Q8386)|c(Q181394),P129,c(Q181394))
action approx
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
value 13
[ANSWERS]
[[{'concept': 'Q8386'}, {'concept': 'Q181394'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?l WHERE { FILTER ( ?y = 13 ) . { SELECT DISTINCT ( COUNT ( ?f ) AS ?y ) ?l WHERE { VALUES ( ?h ) { ( ontology:Q8386 ) ( ontology:Q181394 ) } . ?f rdf:type ?h } GROUP BY ?l } }
Muscarinic acetylcholine receptor M2 Sodium-dependent dopamine transporter Glucocorticoid receptor G protein-activated inward rectifier potassium channel 4 Carbonic anhydrase 1 Vascular endothelial growth factor receptor 2 Prostaglandin G/H synthase 1 D(1A) dopamine receptor Muscarinic acetylcholine receptor M1 Muscarinic acetylcholine receptor M4 Carbonic anhydrase 12 Androgen receptor Estrogen receptor Alpha-1B adrenergic receptor Acetylcholinesterase Muscarinic acetylcholine receptor M3 Delta-type opioid receptor 5-hydroxytryptamine receptor 1F D(1B) dopamine receptor Beta-3 adrenergic receptor Carbonic anhydrase 7 Kappa-type opioid receptor G protein-activated inward rectifier potassium channel 2 5-hydroxytryptamine receptor 3A 5-hydroxytryptamine receptor 7 Mineralocorticoid receptor
Which nutrients around 13 drugs and nutrients contact with
Androgen receptor D(1A) dopamine receptor Kappa-type opioid receptor
action approx
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
value 13
[[{'concept': 'drug'}, {'concept': 'nutrient'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?l WHERE { FILTER ( ?y = 13 ) . { SELECT DISTINCT ( COUNT ( ?f ) AS ?y ) ?l WHERE { VALUES ( ?h ) { ( ontology:drug ) ( ontology:nutrient ) } . ?f rdf:type ?h } GROUP BY ?l } }
[]