Simple Question (Direct)
Simple Question
Q24093790
P703
Q631147
USER
Which taxon does pyridoxamine kinase    Psyr_5070 belong to ?
(Q24093790,P703,c(Q631147))
action filter_type
action find
entity Q24093790
relation P703
type Q631147
['Q24093790', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?z WHERE { resource:Q24093790 property:P703 ?z . ?z rdf:type ontology:Q631147 }
pyridoxamine kinase    Psyr_5070
action filter_type
action find
entity pyridoxamine kinase    Psyr_5070
relation found in taxon
type infraspecific name
['pyridoxamine kinase    Psyr_5070', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?z WHERE { resource:pyridoxamine_kinase____Psyr_5070 property:found_in_taxon ?z . ?z rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21079490
SYSTEM
Pseudomonas syringae pv. syringae B728a
Q21079490
(Q24093790,P703,c(Q631147))
action filter_type
action find
entity Q24093790
relation P703
type Q631147
Pyridoxamine kinase Psyr_5070 belongs to [ANSWER]
['Q24093790', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?z WHERE { resource:Q24093790 property:P703 ?z . ?z rdf:type ontology:Q631147 }
Pseudomonas syringae pv. syringae B728a
Pyridoxamine kinase Psyr_5070 belongs to Pseudomonas syringae pv. syringae B728a
Pseudomonas syringae pv. syringae B728a
action filter_type
action find
entity pyridoxamine kinase    Psyr_5070
relation found in taxon
type infraspecific name
['pyridoxamine kinase    Psyr_5070', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?z WHERE { resource:pyridoxamine_kinase____Psyr_5070 property:found_in_taxon ?z . ?z rdf:type ontology:infraspecific_name }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q24093790
P688
Q863908
USER
What is the nucleic acid sequence that is encoded by pyridoxamine kinase    Psyr_5070 ?
(c(Q863908),P688,Q24093790)
action filter_type
action find_reverse
entity Q24093790
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q24093790']
SELECT DISTINCT ?n WHERE { ?n property:P688 resource:Q24093790 . ?n rdf:type ontology:Q863908 }
pyridoxamine kinase    Psyr_5070
action filter_type
action find_reverse
entity pyridoxamine kinase    Psyr_5070
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'pyridoxamine kinase    Psyr_5070']
SELECT DISTINCT ?n WHERE { ?n property:encodes resource:pyridoxamine_kinase____Psyr_5070 . ?n rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23147194
SYSTEM
pyridoxamine kinase    Psyr_5070
Q23147194
(c(Q863908),P688,Q24093790)
action filter_type
action find_reverse
entity Q24093790
relation P688
type Q863908
The nucleic acid sequence that is encoded by pyridoxamine kinase Psyr_5070 is pyridoxamine kinase Psyr 5070
[{'concept': 'Q863908'}, 'P688', 'Q24093790']
SELECT DISTINCT ?n WHERE { ?n property:P688 resource:Q24093790 . ?n rdf:type ontology:Q863908 }
pyridoxamine kinase    Psyr_5070
The nucleic acid sequence that is encoded by pyridoxamine kinase Psyr_5070 is pyridoxamine kinase Psyr 5070
pyridoxamine kinase    Psyr_5070
action filter_type
action find_reverse
entity pyridoxamine kinase    Psyr_5070
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'pyridoxamine kinase    Psyr_5070']
SELECT DISTINCT ?n WHERE { ?n property:encodes resource:pyridoxamine_kinase____Psyr_5070 . ?n rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q24093790
P702
Q863908
USER
Which nucleic acid sequence encodes pyridoxamine kinase    Psyr_5070 ?
(Q24093790,P702,c(Q863908))
action filter_type
action find
entity Q24093790
relation P702
type Q863908
['Q24093790', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?r WHERE { resource:Q24093790 property:P702 ?r . ?r rdf:type ontology:Q863908 }
pyridoxamine kinase    Psyr_5070
action filter_type
action find
entity pyridoxamine kinase    Psyr_5070
relation encoded by
type nucleic acid sequence
['pyridoxamine kinase    Psyr_5070', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?r WHERE { resource:pyridoxamine_kinase____Psyr_5070 property:encoded_by ?r . ?r rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23147194
SYSTEM
pyridoxamine kinase    Psyr_5070
Q23147194
(Q24093790,P702,c(Q863908))
action filter_type
action find
entity Q24093790
relation P702
type Q863908
Pyridoxamine kinase Psyr 5070 encodes pyridoxamine kinase Psyr_5070
['Q24093790', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?r WHERE { resource:Q24093790 property:P702 ?r . ?r rdf:type ontology:Q863908 }
pyridoxamine kinase    Psyr_5070
Pyridoxamine kinase Psyr 5070 encodes pyridoxamine kinase Psyr_5070
pyridoxamine kinase    Psyr_5070
action filter_type
action find
entity pyridoxamine kinase    Psyr_5070
relation encoded by
type nucleic acid sequence
['pyridoxamine kinase    Psyr_5070', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?r WHERE { resource:pyridoxamine_kinase____Psyr_5070 property:encoded_by ?r . ?r rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q23065699
Q863908
USER
And what about hypothetical protein    LA_4191?
(Q23065699,P702,c(Q863908))
action filter_type
action find
entity Q23065699
relation P702
type Q863908
['Q23065699', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?k WHERE { resource:Q23065699 property:P702 ?k . ?k rdf:type ontology:Q863908 }
hypothetical protein    LA_4191
action filter_type
action find
entity hypothetical protein    LA_4191
relation encoded by
type nucleic acid sequence
['hypothetical protein    LA_4191', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?k WHERE { resource:hypothetical_protein____LA_4191 property:encoded_by ?k . ?k rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23026444
SYSTEM
hypothetical protein    LA_4191
Q23026444
(Q23065699,P702,c(Q863908))
action filter_type
action find
entity Q23065699
relation P702
type Q863908
[ANSWER]
['Q23065699', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?k WHERE { resource:Q23065699 property:P702 ?k . ?k rdf:type ontology:Q863908 }
hypothetical protein    LA_4191
hypothetical protein    LA_4191
action filter_type
action find
entity hypothetical protein    LA_4191
relation encoded by
type nucleic acid sequence
['hypothetical protein    LA_4191', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?k WHERE { resource:hypothetical_protein____LA_4191 property:encoded_by ?k . ?k rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, subject is indirect
Q23026444 Q23503139
P688
Q181394
USER
Is DNA mismatch repair protein MutS domain-containing protein    HMPREF0351_12642 encoded by that nucleic acid sequence ?
(Q23026444,P688,Q23503139)
action is_in
entity Q23503139
action find
entity Q23026444
relation P688
['Q23026444', 'P688', 'Q23503139']
ASK WHERE { resource:Q23026444 property:P688 resource:Q23503139 }
hypothetical protein    LA_4191 DNA mismatch repair protein MutS domain-containing protein    HMPREF0351_12642
action is_in
entity DNA mismatch repair protein MutS domain-containing protein    HMPREF0351_12642
action find
entity hypothetical protein    LA_4191
relation encodes
['hypothetical protein    LA_4191', 'encodes', 'DNA mismatch repair protein MutS domain-containing protein    HMPREF0351_12642']
ASK WHERE { resource:hypothetical_protein____LA_4191 property:encodes resource:DNA_mismatch_repair_protein_MutS_domain-containing_protein____HMPREF0351_12642 }
[]
nutrient
SYSTEM
NO
(Q23026444,P688,Q23503139)
action is_in
entity Q23503139
action find
entity Q23026444
relation P688
[ANSWER]
['Q23026444', 'P688', 'Q23503139']
ASK WHERE { resource:Q23026444 property:P688 resource:Q23503139 }
No
action is_in
entity DNA mismatch repair protein MutS domain-containing protein    HMPREF0351_12642
action find
entity hypothetical protein    LA_4191
relation encodes
['hypothetical protein    LA_4191', 'encodes', 'DNA mismatch repair protein MutS domain-containing protein    HMPREF0351_12642']
ASK WHERE { resource:hypothetical_protein____LA_4191 property:encodes resource:DNA_mismatch_repair_protein_MutS_domain-containing_protein____HMPREF0351_12642 }
[]
Logical Reasoning (All)
Logical|Intersection|Single_Relation
Q23064611 Q23026444
P703
Q631147
USER
Which infraspecific names do hypothetical protein    LA_4191 and glycerol kinase    LA_2119 belong to ?
AND((Q23026444,P703,c(Q631147)), (Q23064611,P703,c(Q631147)))
action filter_type
action intersection
action find
entity Q23026444
relation P703
action find
entity Q23064611
relation P703
type Q631147
{'AND': [['Q23026444', 'P703', {'concept': 'Q631147'}], ['Q23064611', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?d WHERE { resource:Q23026444 property:P703 ?d . resource:Q23064611 property:P703 ?d . ?d rdf:type ontology:Q631147 }
glycerol kinase    LA_2119 hypothetical protein    LA_4191
action filter_type
action intersection
action find
entity hypothetical protein    LA_4191
relation found in taxon
action find
entity glycerol kinase    LA_2119
relation found in taxon
type infraspecific name
{'AND': [['hypothetical protein    LA_4191', 'found in taxon', {'concept': 'infraspecific name'}], ['glycerol kinase    LA_2119', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?d WHERE { resource:hypothetical_protein____LA_4191 property:found_in_taxon ?d . resource:glycerol_kinase____LA_2119 property:found_in_taxon ?d . ?d rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21065229
SYSTEM
Leptospira interrogans serovar Lai str. 56601
Q21065229
AND((Q23026444,P703,c(Q631147)), (Q23064611,P703,c(Q631147)))
action filter_type
action intersection
action find
entity Q23026444
relation P703
action find
entity Q23064611
relation P703
type Q631147
Hypothetical protein LA_4191 and glycerol kinase LA_2119 belong to [ANSWER]
{'AND': [['Q23026444', 'P703', {'concept': 'Q631147'}], ['Q23064611', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?d WHERE { resource:Q23026444 property:P703 ?d . resource:Q23064611 property:P703 ?d . ?d rdf:type ontology:Q631147 }
Leptospira interrogans serovar Lai str. 56601
Hypothetical protein LA_4191 and glycerol kinase LA_2119 belong to Leptospira interrogans serovar Lai str. 56601
Leptospira interrogans serovar Lai str. 56601
action filter_type
action intersection
action find
entity hypothetical protein    LA_4191
relation found in taxon
action find
entity glycerol kinase    LA_2119
relation found in taxon
type infraspecific name
{'AND': [['hypothetical protein    LA_4191', 'found in taxon', {'concept': 'infraspecific name'}], ['glycerol kinase    LA_2119', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?d WHERE { resource:hypothetical_protein____LA_4191 property:found_in_taxon ?d . resource:glycerol_kinase____LA_2119 property:found_in_taxon ?d . ?d rdf:type ontology:infraspecific_name }
[]