Simple Question (Direct)
Simple Question
Q21499330
P681
Q45948
USER
Which is the organelle that is a component of ADP-ribosylation factor-binding protein GGA1 ?
(Q21499330,P681,c(Q45948))
action filter_type
action find
entity Q21499330
relation P681
type Q45948
['Q21499330', 'P681', {'concept': 'Q45948'}]
SELECT DISTINCT ?q WHERE { resource:Q21499330 property:P681 ?q . ?q rdf:type ontology:Q45948 }
ADP-ribosylation factor-binding protein GGA1
action filter_type
action find
entity ADP-ribosylation factor-binding protein GGA1
relation cell component
type organelle
['ADP-ribosylation factor-binding protein GGA1', 'cell component', {'concept': 'organelle'}]
SELECT DISTINCT ?q WHERE { resource:ADP-ribosylation_factor-binding_protein_GGA1 property:cell_component ?q . ?q rdf:type ontology:organelle }
[]
organelle
Q14349519
SYSTEM
intracellular membrane-bounded organelle
Q14349519
(Q21499330,P681,c(Q45948))
action filter_type
action find
entity Q21499330
relation P681
type Q45948
[ANSWER] is the organelle that is a component of ADP-ribosylation factor-binding protein GGA1
['Q21499330', 'P681', {'concept': 'Q45948'}]
SELECT DISTINCT ?q WHERE { resource:Q21499330 property:P681 ?q . ?q rdf:type ontology:Q45948 }
intracellular membrane-bounded organelle
Intracellular membrane-bounded organelle is the organelle that is a component of ADP-ribosylation factor-binding protein GGA1
intracellular membrane-bounded organelle
action filter_type
action find
entity ADP-ribosylation factor-binding protein GGA1
relation cell component
type organelle
['ADP-ribosylation factor-binding protein GGA1', 'cell component', {'concept': 'organelle'}]
SELECT DISTINCT ?q WHERE { resource:ADP-ribosylation_factor-binding_protein_GGA1 property:cell_component ?q . ?q rdf:type ontology:organelle }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21499330
P688
Q863908
USER
What is the nucleic acid sequence that is encoded by ADP-ribosylation factor-binding protein GGA1 ?
(c(Q863908),P688,Q21499330)
action filter_type
action find_reverse
entity Q21499330
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q21499330']
SELECT DISTINCT ?w WHERE { ?w property:P688 resource:Q21499330 . ?w rdf:type ontology:Q863908 }
ADP-ribosylation factor-binding protein GGA1
action filter_type
action find_reverse
entity ADP-ribosylation factor-binding protein GGA1
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'ADP-ribosylation factor-binding protein GGA1']
SELECT DISTINCT ?w WHERE { ?w property:encodes resource:ADP-ribosylation_factor-binding_protein_GGA1 . ?w rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18272327
SYSTEM
Gga1
Q18272327
(c(Q863908),P688,Q21499330)
action filter_type
action find_reverse
entity Q21499330
relation P688
type Q863908
The nucleic acid sequence that is encoded by ADP-ribosylation factor-binding protein GGA1 is not [ANSWER]
[{'concept': 'Q863908'}, 'P688', 'Q21499330']
SELECT DISTINCT ?w WHERE { ?w property:P688 resource:Q21499330 . ?w rdf:type ontology:Q863908 }
Gga1
The nucleic acid sequence that is encoded by ADP-ribosylation factor-binding protein GGA1 is not Gga1
Gga1
action filter_type
action find_reverse
entity ADP-ribosylation factor-binding protein GGA1
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'ADP-ribosylation factor-binding protein GGA1']
SELECT DISTINCT ?w WHERE { ?w property:encodes resource:ADP-ribosylation_factor-binding_protein_GGA1 . ?w rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21499330
P702
Q863908
USER
Which gene encodes ADP-ribosylation factor-binding protein GGA1 ?
(Q21499330,P702,c(Q863908))
action filter_type
action find
entity Q21499330
relation P702
type Q863908
['Q21499330', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?k WHERE { resource:Q21499330 property:P702 ?k . ?k rdf:type ontology:Q863908 }
ADP-ribosylation factor-binding protein GGA1
action filter_type
action find
entity ADP-ribosylation factor-binding protein GGA1
relation encoded by
type nucleic acid sequence
['ADP-ribosylation factor-binding protein GGA1', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?k WHERE { resource:ADP-ribosylation_factor-binding_protein_GGA1 property:encoded_by ?k . ?k rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18272327
SYSTEM
Gga1
Q18272327
(Q21499330,P702,c(Q863908))
action filter_type
action find
entity Q21499330
relation P702
type Q863908
1 [ANSWER] encodes ADP-ribosylation factor-binding protein GGA1
['Q21499330', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?k WHERE { resource:Q21499330 property:P702 ?k . ?k rdf:type ontology:Q863908 }
Gga1
1 Gga1 encodes ADP-ribosylation factor-binding protein GGA1
Gga1
action filter_type
action find
entity ADP-ribosylation factor-binding protein GGA1
relation encoded by
type nucleic acid sequence
['ADP-ribosylation factor-binding protein GGA1', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?k WHERE { resource:ADP-ribosylation_factor-binding_protein_GGA1 property:encoded_by ?k . ?k rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18272327
P684
Q863908
USER
What is the name of the species that has that one as its orthologous gene ?
(c(Q863908),P684,Q18272327)
action filter_type
action find
entity Q18272327
relation P684
type Q863908
[{'concept': 'Q863908'}, 'P684', 'Q18272327']
SELECT DISTINCT ?h WHERE { resource:Q18272327 property:P684 ?h . ?h rdf:type ontology:Q863908 }
Gga1
action filter_type
action find
entity Gga1
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'Gga1']
SELECT DISTINCT ?h WHERE { resource:Gga1 property:ortholog ?h . ?h rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18038079
SYSTEM
GGA1
Q18038079
(c(Q863908),P684,Q18272327)
action filter_type
action find
entity Q18272327
relation P684
type Q863908
The name of the species that has that one as its orthologous gene is the [ANSWER]
[{'concept': 'Q863908'}, 'P684', 'Q18272327']
SELECT DISTINCT ?h WHERE { resource:Q18272327 property:P684 ?h . ?h rdf:type ontology:Q863908 }
GGA1
The name of the species that has that one as its orthologous gene is the GGA1
GGA1
action filter_type
action find
entity Gga1
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'Gga1']
SELECT DISTINCT ?h WHERE { resource:Gga1 property:ortholog ?h . ?h rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|3 entities, all direct, 2 are query entities
Q18038079 Q23495985 Q21756338
P688
Q181394
USER
Does GGA1 encode 50S ribosomal protein L5    spr0201 and hypothetical protein    TTHA1785 ?
(Q18038079,P688,Q23495985) (Q18038079,P688,Q21756338)
action is_in
entity Q18038079
action intersection
action find_reverse
entity Q23495985
relation P688
action find_reverse
entity Q21756338
relation P688
['Q18038079', 'P688', 'Q23495985'] ['Q18038079', 'P688', 'Q21756338']
ASK WHERE { resource:Q18038079 property:P688 resource:Q23495985 . resource:Q18038079 property:P688 resource:Q21756338 }
GGA1 50S ribosomal protein L5    spr0201 hypothetical protein    TTHA1785
action is_in
entity GGA1
action intersection
action find_reverse
entity 50S ribosomal protein L5    spr0201
relation encodes
action find_reverse
entity hypothetical protein    TTHA1785
relation encodes
['GGA1', 'encodes', '50S ribosomal protein L5    spr0201'] ['GGA1', 'encodes', 'hypothetical protein    TTHA1785']
ASK WHERE { resource:GGA1 property:encodes resource:50S_ribosomal_protein_L5____spr0201 . resource:GGA1 property:encodes resource:hypothetical_protein____TTHA1785 }
[]
nutrient
SYSTEM
NO
(Q18038079,P688,Q23495985) (Q18038079,P688,Q21756338)
action is_in
entity Q18038079
action intersection
action find_reverse
entity Q23495985
relation P688
action find_reverse
entity Q21756338
relation P688
[ANSWER]
['Q18038079', 'P688', 'Q23495985'] ['Q18038079', 'P688', 'Q21756338']
ASK WHERE { resource:Q18038079 property:P688 resource:Q23495985 . resource:Q18038079 property:P688 resource:Q21756338 }
No
action is_in
entity GGA1
action intersection
action find_reverse
entity 50S ribosomal protein L5    spr0201
relation encodes
action find_reverse
entity hypothetical protein    TTHA1785
relation encodes
['GGA1', 'encodes', '50S ribosomal protein L5    spr0201'] ['GGA1', 'encodes', 'hypothetical protein    TTHA1785']
ASK WHERE { resource:GGA1 property:encodes resource:50S_ribosomal_protein_L5____spr0201 . resource:GGA1 property:encodes resource:hypothetical_protein____TTHA1785 }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q18045336 Q18272327
P688
Q181394
USER
Which nutrients are encoded by Gga1 or SLC5A7 ?
OR((Q18272327,P688,c(Q181394)), (Q18045336,P688,c(Q181394)))
action filter_type
action union
action find
entity Q18272327
relation P688
action find
entity Q18045336
relation P688
type Q181394
{'OR': [['Q18272327', 'P688', {'concept': 'Q181394'}], ['Q18045336', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?i WHERE { ?i rdf:type ontology:Q181394 . { { resource:Q18272327 property:P688 ?i } UNION { resource:Q18045336 property:P688 ?i } } }
SLC5A7 Gga1
action filter_type
action union
action find
entity Gga1
relation encodes
action find
entity SLC5A7
relation encodes
type nutrient
{'OR': [['Gga1', 'encodes', {'concept': 'nutrient'}], ['SLC5A7', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?i WHERE { ?i rdf:type ontology:nutrient . { { resource:Gga1 property:encodes ?i } UNION { resource:SLC5A7 property:encodes ?i } } }
[]
nutrient
Q21499330 Q21150581 Q21127144
SYSTEM
ADP-ribosylation factor-binding protein GGA1, SLC5A7 protein, High affinity choline transporter 1
Q21499330 Q21150581 Q21127144
OR((Q18272327,P688,c(Q181394)), (Q18045336,P688,c(Q181394)))
action filter_type
action union
action find
entity Q18272327
relation P688
action find
entity Q18045336
relation P688
type Q181394
[ANSWERS] are encoded by Gga1 or SLC5A7
{'OR': [['Q18272327', 'P688', {'concept': 'Q181394'}], ['Q18045336', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?i WHERE { ?i rdf:type ontology:Q181394 . { { resource:Q18272327 property:P688 ?i } UNION { resource:Q18045336 property:P688 ?i } } }
ADP-ribosylation factor-binding protein GGA1 SLC5A7 protein High affinity choline transporter 1
ADP-ribosylation factor-binding protein GGA1, SLC5A7 protein and High affinity choline transporter 1 are encoded by Gga1 or SLC5A7
ADP-ribosylation factor-binding protein GGA1 SLC5A7 protein High affinity choline transporter 1
action filter_type
action union
action find
entity Gga1
relation encodes
action find
entity SLC5A7
relation encodes
type nutrient
{'OR': [['Gga1', 'encodes', {'concept': 'nutrient'}], ['SLC5A7', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?i WHERE { ?i rdf:type ontology:nutrient . { { resource:Gga1 property:encodes ?i } UNION { resource:SLC5A7 property:encodes ?i } } }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Mult. entity type
Q18045336 Q18048432
P684
Q863908
USER
How many nucleic acid sequences are an otrhologus genes for SLC5A7 or ZNF598 ?
(Q18045336,P684,c(Q863908)) (Q18048432,P684,c(Q863908))
action count
action union
action filter_type
action find
entity Q18045336
relation P684
type Q863908
action filter_type
action find
entity Q18048432
relation P684
type Q863908
['Q18045336', 'P684', {'concept': 'Q863908'}] ['Q18048432', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ( COUNT ( ?e ) AS ?x ) WHERE { VALUES ( ?v ) { ( resource:Q18048432 ) ( resource:Q18045336 ) } . ?v property:P684 ?e }
SLC5A7 ZNF598
action count
action union
action filter_type
action find
entity SLC5A7
relation ortholog
type nucleic acid sequence
action filter_type
action find
entity ZNF598
relation ortholog
type nucleic acid sequence
['SLC5A7', 'ortholog', {'concept': 'nucleic acid sequence'}] ['ZNF598', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ( COUNT ( ?e ) AS ?x ) WHERE { VALUES ( ?v ) { ( resource:ZNF598 ) ( resource:SLC5A7 ) } . ?v property:ortholog ?e }
[]
nucleic acid sequence
SYSTEM
2
Q18296488 Q18261387
(Q18045336,P684,c(Q863908)) (Q18048432,P684,c(Q863908))
action count
action union
action filter_type
action find
entity Q18045336
relation P684
type Q863908
action filter_type
action find
entity Q18048432
relation P684
type Q863908
[ANSWER]
['Q18045336', 'P684', {'concept': 'Q863908'}] ['Q18048432', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ( COUNT ( ?e ) AS ?x ) WHERE { VALUES ( ?v ) { ( resource:Q18048432 ) ( resource:Q18045336 ) } . ?v property:P684 ?e }
Zfp598 Slc5a7
2
action count
action union
action filter_type
action find
entity SLC5A7
relation ortholog
type nucleic acid sequence
action filter_type
action find
entity ZNF598
relation ortholog
type nucleic acid sequence
['SLC5A7', 'ortholog', {'concept': 'nucleic acid sequence'}] ['ZNF598', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ( COUNT ( ?e ) AS ?x ) WHERE { VALUES ( ?v ) { ( resource:ZNF598 ) ( resource:SLC5A7 ) } . ?v property:ortholog ?e }
[]
Quantitative Reasoning (All)
Quantitative|Atleast/ Atmost/ Approx. the same/Equal|Single entity type
P682
Q3249551 Q181394
USER
Which processes are atmost 5031 nutrients involved in ?
(c(Q181394),P682,c(Q3249551))
action atmost
action find_reverse_tuple_counts
relation P682
type Q3249551
type Q181394
value 5031
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q3249551'}]
SELECT DISTINCT ?p WHERE { { SELECT DISTINCT ?p ( COUNT ( ?i ) AS ?m ) WHERE { ?p rdf:type ontology:Q3249551 . ?i rdf:type ontology:Q181394 . ?i property:P682 ?p } GROUP BY ?p } . FILTER ( ?m <= 5031 ) }
action atmost
action find_reverse_tuple_counts
relation biological process
type process
type nutrient
value 5031
[{'concept': 'nutrient'}, 'biological process', {'concept': 'process'}]
SELECT DISTINCT ?p WHERE { { SELECT DISTINCT ?p ( COUNT ( ?i ) AS ?m ) WHERE { ?p rdf:type ontology:process . ?i rdf:type ontology:nutrient . ?i property:biological_process ?p } GROUP BY ?p } . FILTER ( ?m <= 5031 ) }
[]
process nutrient
Q306383 Q14885910 Q162925
SYSTEM
G1/S transition of mitotic cell cycle, reproductive process, meiotic nuclear division
Q22269718 Q306383 Q14820058 Q22284496 Q22271548 Q9332 Q22293230 Q14873025 Q14916317 Q14859560 Q14865172 Q14885910 Q14864472 Q162925
(c(Q181394),P682,c(Q3249551))
action atmost
action find_reverse_tuple_counts
relation P682
type Q3249551
type Q181394
value 5031
[ANSWERS]
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q3249551'}]
SELECT DISTINCT ?p WHERE { { SELECT DISTINCT ?p ( COUNT ( ?i ) AS ?m ) WHERE { ?p rdf:type ontology:Q3249551 . ?i rdf:type ontology:Q181394 . ?i property:P682 ?p } GROUP BY ?p } . FILTER ( ?m <= 5031 ) }
locomotion G1/S transition of mitotic cell cycle growth biological regulation cell killing behavior developmental process cellular process immune system process response to stimulus signaling reproductive process rhythmic process meiotic nuclear division
Which processes are atmost 5031 nutrients involved in
G1/S transition of mitotic cell cycle reproductive process meiotic nuclear division
action atmost
action find_reverse_tuple_counts
relation biological process
type process
type nutrient
value 5031
[{'concept': 'nutrient'}, 'biological process', {'concept': 'process'}]
SELECT DISTINCT ?p WHERE { { SELECT DISTINCT ?p ( COUNT ( ?i ) AS ?m ) WHERE { ?p rdf:type ontology:process . ?i rdf:type ontology:nutrient . ?i property:biological_process ?p } GROUP BY ?p } . FILTER ( ?m <= 5031 ) }
[]