Simple Question (Direct)
Simple Question
Q23538749
P682
Q2996394
USER
Which biological process is glycerol-3-phosphate cytidylyltransferase    lp_1248 involved in ?
(Q23538749,P682,c(Q2996394))
action filter_type
action find
entity Q23538749
relation P682
type Q2996394
['Q23538749', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?j WHERE { resource:Q23538749 property:P682 ?j . ?j rdf:type ontology:Q2996394 }
glycerol-3-phosphate cytidylyltransferase    lp_1248
action filter_type
action find
entity glycerol-3-phosphate cytidylyltransferase    lp_1248
relation biological process
type biological process
['glycerol-3-phosphate cytidylyltransferase    lp_1248', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?j WHERE { resource:glycerol-3-phosphate_cytidylyltransferase____lp_1248 property:biological_process ?j . ?j rdf:type ontology:biological_process }
[]
biological process
Q14914008
SYSTEM
biosynthetic process
Q14914008
(Q23538749,P682,c(Q2996394))
action filter_type
action find
entity Q23538749
relation P682
type Q2996394
[ANSWER] is glycerol-3-phosphate cytidylyltransferase lp_1248 involved in
['Q23538749', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?j WHERE { resource:Q23538749 property:P682 ?j . ?j rdf:type ontology:Q2996394 }
biosynthetic process
Biosynthetic process is glycerol-3-phosphate cytidylyltransferase lp_1248 involved in
biosynthetic process
action filter_type
action find
entity glycerol-3-phosphate cytidylyltransferase    lp_1248
relation biological process
type biological process
['glycerol-3-phosphate cytidylyltransferase    lp_1248', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?j WHERE { resource:glycerol-3-phosphate_cytidylyltransferase____lp_1248 property:biological_process ?j . ?j rdf:type ontology:biological_process }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23538749
P703
Q631147
USER
Which taxon is glycerol-3-phosphate cytidylyltransferase    lp_1248 a part of ?
(Q23538749,P703,c(Q631147))
action filter_type
action find
entity Q23538749
relation P703
type Q631147
['Q23538749', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:Q631147 . resource:Q23538749 property:P703 ?j }
glycerol-3-phosphate cytidylyltransferase    lp_1248
action filter_type
action find
entity glycerol-3-phosphate cytidylyltransferase    lp_1248
relation found in taxon
type infraspecific name
['glycerol-3-phosphate cytidylyltransferase    lp_1248', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:infraspecific_name . resource:glycerol-3-phosphate_cytidylyltransferase____lp_1248 property:found_in_taxon ?j }
[]
infraspecific name
Q21102979
SYSTEM
Lactobacillus plantarum WCFS1
Q21102979
(Q23538749,P703,c(Q631147))
action filter_type
action find
entity Q23538749
relation P703
type Q631147
Species [ANSWER] is glycerol-3-phosphate cytidylyltransferase lp_1248 a part of
['Q23538749', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:Q631147 . resource:Q23538749 property:P703 ?j }
Lactobacillus plantarum WCFS1
Species Lactobacillus plantarum WCFS1 is glycerol-3-phosphate cytidylyltransferase lp_1248 a part of
Lactobacillus plantarum WCFS1
action filter_type
action find
entity glycerol-3-phosphate cytidylyltransferase    lp_1248
relation found in taxon
type infraspecific name
['glycerol-3-phosphate cytidylyltransferase    lp_1248', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:infraspecific_name . resource:glycerol-3-phosphate_cytidylyltransferase____lp_1248 property:found_in_taxon ?j }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q21102979 Q18060104
P703
Q863908
USER
Is RAB11FIP1P1 found in the taxon that infraspecific name ?
(Q18060104,P703,Q21102979)
action is_in
entity Q18060104
action find
entity Q21102979
relation P703
['Q18060104', 'P703', 'Q21102979']
ASK WHERE { resource:Q21102979 property:P703 resource:Q18060104 }
Lactobacillus plantarum WCFS1 RAB11FIP1P1
action is_in
entity RAB11FIP1P1
action find
entity Lactobacillus plantarum WCFS1
relation found in taxon
['RAB11FIP1P1', 'found in taxon', 'Lactobacillus plantarum WCFS1']
ASK WHERE { resource:Lactobacillus_plantarum_WCFS1 property:found_in_taxon resource:RAB11FIP1P1 }
[]
nucleic acid sequence
SYSTEM
NO
(Q18060104,P703,Q21102979)
action is_in
entity Q18060104
action find
entity Q21102979
relation P703
[ANSWER]
['Q18060104', 'P703', 'Q21102979']
ASK WHERE { resource:Q21102979 property:P703 resource:Q18060104 }
No
action is_in
entity RAB11FIP1P1
action find
entity Lactobacillus plantarum WCFS1
relation found in taxon
['RAB11FIP1P1', 'found in taxon', 'Lactobacillus plantarum WCFS1']
ASK WHERE { resource:Lactobacillus_plantarum_WCFS1 property:found_in_taxon resource:RAB11FIP1P1 }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q21990847 Q23538749
P680
Q44424
USER
Which chemical bonds represent molecular function of glycerol-3-phosphate cytidylyltransferase    lp_1248 or E3 ubiquitin-protein ligase ZNRF2 ?
OR((Q23538749,P680,c(Q44424)), (Q21990847,P680,c(Q44424)))
action filter_type
action union
action find
entity Q23538749
relation P680
action find
entity Q21990847
relation P680
type Q44424
{'OR': [['Q23538749', 'P680', {'concept': 'Q44424'}], ['Q21990847', 'P680', {'concept': 'Q44424'}]]}
SELECT DISTINCT ?u WHERE { { ?y property:P680 ?u . VALUES ( ?y ) { ( resource:Q23538749 ) ( resource:Q21990847 ) } } . ?u rdf:type ontology:Q44424 }
E3 ubiquitin-protein ligase ZNRF2 glycerol-3-phosphate cytidylyltransferase    lp_1248
action filter_type
action union
action find
entity glycerol-3-phosphate cytidylyltransferase    lp_1248
relation molecular function
action find
entity E3 ubiquitin-protein ligase ZNRF2
relation molecular function
type chemical bond
{'OR': [['glycerol-3-phosphate cytidylyltransferase    lp_1248', 'molecular function', {'concept': 'chemical bond'}], ['E3 ubiquitin-protein ligase ZNRF2', 'molecular function', {'concept': 'chemical bond'}]]}
SELECT DISTINCT ?u WHERE { { ?y property:molecular_function ?u . VALUES ( ?y ) { ( resource:glycerol-3-phosphate_cytidylyltransferase____lp_1248 ) ( resource:E3_ubiquitin-protein_ligase_ZNRF2 ) } } . ?u rdf:type ontology:chemical_bond }
[]
chemical bond
Q14633865 Q13667380
SYSTEM
zinc ion binding, metal ion binding
Q14633865 Q13667380
OR((Q23538749,P680,c(Q44424)), (Q21990847,P680,c(Q44424)))
action filter_type
action union
action find
entity Q23538749
relation P680
action find
entity Q21990847
relation P680
type Q44424
The [ANSWERS] represent molecular function of glycerol-3-phosphate cytidylyltransferase lp_1248 or E3 ubiquitin-protein ligase ZNRF2
{'OR': [['Q23538749', 'P680', {'concept': 'Q44424'}], ['Q21990847', 'P680', {'concept': 'Q44424'}]]}
SELECT DISTINCT ?u WHERE { { ?y property:P680 ?u . VALUES ( ?y ) { ( resource:Q23538749 ) ( resource:Q21990847 ) } } . ?u rdf:type ontology:Q44424 }
zinc ion binding metal ion binding
The zinc ion binding and metal ion binding represent molecular function of glycerol-3-phosphate cytidylyltransferase lp_1248 or E3 ubiquitin-protein ligase ZNRF2
zinc ion binding metal ion binding
action filter_type
action union
action find
entity glycerol-3-phosphate cytidylyltransferase    lp_1248
relation molecular function
action find
entity E3 ubiquitin-protein ligase ZNRF2
relation molecular function
type chemical bond
{'OR': [['glycerol-3-phosphate cytidylyltransferase    lp_1248', 'molecular function', {'concept': 'chemical bond'}], ['E3 ubiquitin-protein ligase ZNRF2', 'molecular function', {'concept': 'chemical bond'}]]}
SELECT DISTINCT ?u WHERE { { ?y property:molecular_function ?u . VALUES ( ?y ) { ( resource:glycerol-3-phosphate_cytidylyltransferase____lp_1248 ) ( resource:E3_ubiquitin-protein_ligase_ZNRF2 ) } } . ?u rdf:type ontology:chemical_bond }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23538749
P681
Q15989253
USER
Which part is a component of glycerol-3-phosphate cytidylyltransferase    lp_1248 ?
(Q23538749,P681,c(Q15989253))
action filter_type
action find
entity Q23538749
relation P681
type Q15989253
['Q23538749', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?m WHERE { resource:Q23538749 property:P681 ?m . ?m rdf:type ontology:Q15989253 }
glycerol-3-phosphate cytidylyltransferase    lp_1248
action filter_type
action find
entity glycerol-3-phosphate cytidylyltransferase    lp_1248
relation cell component
type part
['glycerol-3-phosphate cytidylyltransferase    lp_1248', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?m WHERE { resource:glycerol-3-phosphate_cytidylyltransferase____lp_1248 property:cell_component ?m . ?m rdf:type ontology:part }
[]
part
Q79899
SYSTEM
cytoplasm
Q79899
(Q23538749,P681,c(Q15989253))
action filter_type
action find
entity Q23538749
relation P681
type Q15989253
[ANSWER] is a component of glycerol-3-phosphate cytidylyltransferase lp_1248
['Q23538749', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?m WHERE { resource:Q23538749 property:P681 ?m . ?m rdf:type ontology:Q15989253 }
cytoplasm
Cytoplasm is a component of glycerol-3-phosphate cytidylyltransferase lp_1248
cytoplasm
action filter_type
action find
entity glycerol-3-phosphate cytidylyltransferase    lp_1248
relation cell component
type part
['glycerol-3-phosphate cytidylyltransferase    lp_1248', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?m WHERE { resource:glycerol-3-phosphate_cytidylyltransferase____lp_1248 property:cell_component ?m . ?m rdf:type ontology:part }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q22232553
Q15989253
USER
And what about initiation factor IF-3    Rv1641?
(Q22232553,P681,c(Q15989253))
action filter_type
action find
entity Q22232553
relation P681
type Q15989253
['Q22232553', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?t WHERE { resource:Q22232553 property:P681 ?t . ?t rdf:type ontology:Q15989253 }
initiation factor IF-3    Rv1641
action filter_type
action find
entity initiation factor IF-3    Rv1641
relation cell component
type part
['initiation factor IF-3    Rv1641', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?t WHERE { resource:initiation_factor_IF-3____Rv1641 property:cell_component ?t . ?t rdf:type ontology:part }
[]
part
Q79899
SYSTEM
cytoplasm
Q79899
(Q22232553,P681,c(Q15989253))
action filter_type
action find
entity Q22232553
relation P681
type Q15989253
[ANSWER]
['Q22232553', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?t WHERE { resource:Q22232553 property:P681 ?t . ?t rdf:type ontology:Q15989253 }
cytoplasm
cytoplasm
action filter_type
action find
entity initiation factor IF-3    Rv1641
relation cell component
type part
['initiation factor IF-3    Rv1641', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?t WHERE { resource:initiation_factor_IF-3____Rv1641 property:cell_component ?t . ?t rdf:type ontology:part }
[]
Logical Reasoning (All)
Logical|Intersection|Single_Relation
Q21990664 Q23538749
P680
Q44424
USER
Which chemical bonds represents the molecular function of glycerol-3-phosphate cytidylyltransferase    lp_1248 and Speckle targeted PIP5K1A-regulated poly(A) polymerase ?
AND((Q23538749,P680,c(Q44424)), (Q21990664,P680,c(Q44424)))
action filter_type
action intersection
action find
entity Q23538749
relation P680
action find
entity Q21990664
relation P680
type Q44424
{'AND': [['Q23538749', 'P680', {'concept': 'Q44424'}], ['Q21990664', 'P680', {'concept': 'Q44424'}]]}
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:Q44424 . resource:Q23538749 property:P680 ?s . resource:Q21990664 property:P680 ?s }
Speckle targeted PIP5K1A-regulated poly(A) polymerase glycerol-3-phosphate cytidylyltransferase    lp_1248
action filter_type
action intersection
action find
entity glycerol-3-phosphate cytidylyltransferase    lp_1248
relation molecular function
action find
entity Speckle targeted PIP5K1A-regulated poly(A) polymerase
relation molecular function
type chemical bond
{'AND': [['glycerol-3-phosphate cytidylyltransferase    lp_1248', 'molecular function', {'concept': 'chemical bond'}], ['Speckle targeted PIP5K1A-regulated poly(A) polymerase', 'molecular function', {'concept': 'chemical bond'}]]}
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:chemical_bond . resource:glycerol-3-phosphate_cytidylyltransferase____lp_1248 property:molecular_function ?s . resource:Speckle_targeted_PIP5K1A-regulated_poly(A)_polymerase property:molecular_function ?s }
[]
chemical bond
Q13667380
SYSTEM
metal ion binding
Q13667380
AND((Q23538749,P680,c(Q44424)), (Q21990664,P680,c(Q44424)))
action filter_type
action intersection
action find
entity Q23538749
relation P680
action find
entity Q21990664
relation P680
type Q44424
The [ANSWER] represents the molecular function of glycerol-3-phosphate cytidylyltransferase lp_1248 and Speckle targeted PIP5K1A-regulated poly(A) polymerase
{'AND': [['Q23538749', 'P680', {'concept': 'Q44424'}], ['Q21990664', 'P680', {'concept': 'Q44424'}]]}
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:Q44424 . resource:Q23538749 property:P680 ?s . resource:Q21990664 property:P680 ?s }
metal ion binding
The metal ion binding represents the molecular function of glycerol-3-phosphate cytidylyltransferase lp_1248 and Speckle targeted PIP5K1A-regulated poly(A) polymerase
metal ion binding
action filter_type
action intersection
action find
entity glycerol-3-phosphate cytidylyltransferase    lp_1248
relation molecular function
action find
entity Speckle targeted PIP5K1A-regulated poly(A) polymerase
relation molecular function
type chemical bond
{'AND': [['glycerol-3-phosphate cytidylyltransferase    lp_1248', 'molecular function', {'concept': 'chemical bond'}], ['Speckle targeted PIP5K1A-regulated poly(A) polymerase', 'molecular function', {'concept': 'chemical bond'}]]}
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:chemical_bond . resource:glycerol-3-phosphate_cytidylyltransferase____lp_1248 property:molecular_function ?s . resource:Speckle_targeted_PIP5K1A-regulated_poly(A)_polymerase property:molecular_function ?s }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q13667380 Q23467486
P680
Q181394
USER
Does hypothetical protein    Rru_A2766 have the molecular function that chemical bond ?
(Q23467486,P680,Q13667380)
action is_in
entity Q13667380
action find
entity Q23467486
relation P680
['Q23467486', 'P680', 'Q13667380']
ASK WHERE { resource:Q23467486 property:P680 resource:Q13667380 }
metal ion binding hypothetical protein    Rru_A2766
action is_in
entity metal ion binding
action find
entity hypothetical protein    Rru_A2766
relation molecular function
['hypothetical protein    Rru_A2766', 'molecular function', 'metal ion binding']
ASK WHERE { resource:hypothetical_protein____Rru_A2766 property:molecular_function resource:metal_ion_binding }
[]
nutrient
SYSTEM
YES
(Q23467486,P680,Q13667380)
action is_in
entity Q13667380
action find
entity Q23467486
relation P680
[ANSWER]
['Q23467486', 'P680', 'Q13667380']
ASK WHERE { resource:Q23467486 property:P680 resource:Q13667380 }
Yes
action is_in
entity metal ion binding
action find
entity hypothetical protein    Rru_A2766
relation molecular function
['hypothetical protein    Rru_A2766', 'molecular function', 'metal ion binding']
ASK WHERE { resource:hypothetical_protein____Rru_A2766 property:molecular_function resource:metal_ion_binding }
[]