Simple Question (Direct)
Simple Question
Q23488759
P702
Q863908
USER
Which nucleic acid sequence encodes gamma-glutamyl phosphate reductase    SSUBM407_1304 ?
(Q23488759,P702,c(Q863908))
action filter_type
action find
entity Q23488759
relation P702
type Q863908
['Q23488759', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?n WHERE { resource:Q23488759 property:P702 ?n . ?n rdf:type ontology:Q863908 }
gamma-glutamyl phosphate reductase    SSUBM407_1304
action filter_type
action find
entity gamma-glutamyl phosphate reductase    SSUBM407_1304
relation encoded by
type nucleic acid sequence
['gamma-glutamyl phosphate reductase    SSUBM407_1304', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?n WHERE { resource:gamma-glutamyl_phosphate_reductase____SSUBM407_1304 property:encoded_by ?n . ?n rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23215168
SYSTEM
gamma-glutamyl phosphate reductase    SSUBM407_1304
Q23215168
(Q23488759,P702,c(Q863908))
action filter_type
action find
entity Q23488759
relation P702
type Q863908
Gamma-glutamyl phosphate reductase SSUBM407 1304 encodes gamma-glutamyl phosphate reductase SSUBM407_1304
['Q23488759', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?n WHERE { resource:Q23488759 property:P702 ?n . ?n rdf:type ontology:Q863908 }
gamma-glutamyl phosphate reductase    SSUBM407_1304
Gamma-glutamyl phosphate reductase SSUBM407 1304 encodes gamma-glutamyl phosphate reductase SSUBM407_1304
gamma-glutamyl phosphate reductase    SSUBM407_1304
action filter_type
action find
entity gamma-glutamyl phosphate reductase    SSUBM407_1304
relation encoded by
type nucleic acid sequence
['gamma-glutamyl phosphate reductase    SSUBM407_1304', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?n WHERE { resource:gamma-glutamyl_phosphate_reductase____SSUBM407_1304 property:encoded_by ?n . ?n rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23215168
P703
Q631147
USER
Where is that nucleic acid sequence found ?
(Q23215168,P703,c(Q631147))
action filter_type
action find
entity Q23215168
relation P703
type Q631147
['Q23215168', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?g WHERE { ?g rdf:type ontology:Q631147 . resource:Q23215168 property:P703 ?g }
gamma-glutamyl phosphate reductase    SSUBM407_1304
action filter_type
action find
entity gamma-glutamyl phosphate reductase    SSUBM407_1304
relation found in taxon
type infraspecific name
['gamma-glutamyl phosphate reductase    SSUBM407_1304', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?g WHERE { ?g rdf:type ontology:infraspecific_name . resource:gamma-glutamyl_phosphate_reductase____SSUBM407_1304 property:found_in_taxon ?g }
[]
infraspecific name
Q21102960
SYSTEM
Streptococcus suis BM407
Q21102960
(Q23215168,P703,c(Q631147))
action filter_type
action find
entity Q23215168
relation P703
type Q631147
That nucleic acid sequence is found in [ANSWER]
['Q23215168', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?g WHERE { ?g rdf:type ontology:Q631147 . resource:Q23215168 property:P703 ?g }
Streptococcus suis BM407
That nucleic acid sequence is found in Streptococcus suis BM407
Streptococcus suis BM407
action filter_type
action find
entity gamma-glutamyl phosphate reductase    SSUBM407_1304
relation found in taxon
type infraspecific name
['gamma-glutamyl phosphate reductase    SSUBM407_1304', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?g WHERE { ?g rdf:type ontology:infraspecific_name . resource:gamma-glutamyl_phosphate_reductase____SSUBM407_1304 property:found_in_taxon ?g }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23215168
P688
Q181394
USER
Which nutrient is gamma-glutamyl phosphate reductase    SSUBM407_1304 an encoding of ?
(Q23215168,P688,c(Q181394))
action filter_type
action find
entity Q23215168
relation P688
type Q181394
['Q23215168', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?v WHERE { resource:Q23215168 property:P688 ?v . ?v rdf:type ontology:Q181394 }
gamma-glutamyl phosphate reductase    SSUBM407_1304
action filter_type
action find
entity gamma-glutamyl phosphate reductase    SSUBM407_1304
relation encodes
type nutrient
['gamma-glutamyl phosphate reductase    SSUBM407_1304', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?v WHERE { resource:gamma-glutamyl_phosphate_reductase____SSUBM407_1304 property:encodes ?v . ?v rdf:type ontology:nutrient }
[]
nutrient
Q23488759
SYSTEM
gamma-glutamyl phosphate reductase    SSUBM407_1304
Q23488759
(Q23215168,P688,c(Q181394))
action filter_type
action find
entity Q23215168
relation P688
type Q181394
Is gamma-glutamyl phosphate reductase SSUBM407 1304 is gamma-glutamyl phosphate reductase SSUBM407_1304 an encoding of
['Q23215168', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?v WHERE { resource:Q23215168 property:P688 ?v . ?v rdf:type ontology:Q181394 }
gamma-glutamyl phosphate reductase    SSUBM407_1304
Is gamma-glutamyl phosphate reductase SSUBM407 1304 is gamma-glutamyl phosphate reductase SSUBM407_1304 an encoding of
gamma-glutamyl phosphate reductase    SSUBM407_1304
action filter_type
action find
entity gamma-glutamyl phosphate reductase    SSUBM407_1304
relation encodes
type nutrient
['gamma-glutamyl phosphate reductase    SSUBM407_1304', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?v WHERE { resource:gamma-glutamyl_phosphate_reductase____SSUBM407_1304 property:encodes ?v . ?v rdf:type ontology:nutrient }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q23075765
Q181394
USER
And how about hypothetical protein    EAE_23690?
(Q23075765,P688,c(Q181394))
action filter_type
action find
entity Q23075765
relation P688
type Q181394
['Q23075765', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:Q181394 . resource:Q23075765 property:P688 ?u }
hypothetical protein    EAE_23690
action filter_type
action find
entity hypothetical protein    EAE_23690
relation encodes
type nutrient
['hypothetical protein    EAE_23690', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:nutrient . resource:hypothetical_protein____EAE_23690 property:encodes ?u }
[]
nutrient
Q24127928
SYSTEM
hypothetical protein    EAE_23690
Q24127928
(Q23075765,P688,c(Q181394))
action filter_type
action find
entity Q23075765
relation P688
type Q181394
[ANSWER]
['Q23075765', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:Q181394 . resource:Q23075765 property:P688 ?u }
hypothetical protein    EAE_23690
hypothetical protein    EAE_23690
action filter_type
action find
entity hypothetical protein    EAE_23690
relation encodes
type nutrient
['hypothetical protein    EAE_23690', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:nutrient . resource:hypothetical_protein____EAE_23690 property:encodes ?u }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q24127928 Q23075765
P688
Q863908
USER
Does hypothetical protein    EAE_23690 encode that nutrient ?
(Q23075765,P688,Q24127928)
action is_in
entity Q24127928
action find
entity Q23075765
relation P688
['Q23075765', 'P688', 'Q24127928']
ASK WHERE { resource:Q23075765 property:P688 resource:Q24127928 }
hypothetical protein    EAE_23690 hypothetical protein    EAE_23690
action is_in
entity hypothetical protein    EAE_23690
action find
entity hypothetical protein    EAE_23690
relation encodes
['hypothetical protein    EAE_23690', 'encodes', 'hypothetical protein    EAE_23690']
ASK WHERE { resource:hypothetical_protein____EAE_23690 property:encodes resource:hypothetical_protein____EAE_23690 }
[]
nucleic acid sequence
SYSTEM
YES
(Q23075765,P688,Q24127928)
action is_in
entity Q24127928
action find
entity Q23075765
relation P688
[ANSWER]
['Q23075765', 'P688', 'Q24127928']
ASK WHERE { resource:Q23075765 property:P688 resource:Q24127928 }
Yes
action is_in
entity hypothetical protein    EAE_23690
action find
entity hypothetical protein    EAE_23690
relation encodes
['hypothetical protein    EAE_23690', 'encodes', 'hypothetical protein    EAE_23690']
ASK WHERE { resource:hypothetical_protein____EAE_23690 property:encodes resource:hypothetical_protein____EAE_23690 }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Single entity type
Q1057
P682
Q3249551 Q181394
USER
How many processes are lesser number of nutrients involved in than metabolic process ?
(c(Q181394),P682,c(Q3249551))
action count
action less
action find_reverse_tuple_counts
relation P682
type Q3249551
type Q181394
action count
action filter_type
action find_reverse
entity Q1057
relation P682
type Q181394
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q3249551'}]
SELECT DISTINCT ( COUNT ( ?i ) AS ?e ) WHERE { { SELECT DISTINCT ?i ( COUNT ( ?k ) AS ?w ) WHERE { ?k rdf:type ontology:Q181394 . ?i rdf:type ontology:Q3249551 . ?k property:P682 ?i } GROUP BY ?i } . { SELECT DISTINCT ( COUNT ( ?p ) AS ?b ) WHERE { ?p property:P682 resource:Q1057 . ?p rdf:type ontology:Q181394 } } . FILTER ( ?w < ?b ) }
metabolic process
action count
action less
action find_reverse_tuple_counts
relation biological process
type process
type nutrient
action count
action filter_type
action find_reverse
entity metabolic process
relation biological process
type nutrient
[{'concept': 'nutrient'}, 'biological process', {'concept': 'process'}]
SELECT DISTINCT ( COUNT ( ?i ) AS ?e ) WHERE { { SELECT DISTINCT ?i ( COUNT ( ?k ) AS ?w ) WHERE { ?k rdf:type ontology:nutrient . ?i rdf:type ontology:process . ?k property:biological_process ?i } GROUP BY ?i } . { SELECT DISTINCT ( COUNT ( ?p ) AS ?b ) WHERE { ?p property:biological_process resource:metabolic_process . ?p rdf:type ontology:nutrient } } . FILTER ( ?w < ?b ) }
[]
process nutrient
SYSTEM
14
Q22269718 Q306383 Q14820058 Q22284496 Q22271548 Q9332 Q22293230 Q14873025 Q14916317 Q14859560 Q14865172 Q14885910 Q14864472 Q162925
(c(Q181394),P682,c(Q3249551))
action count
action less
action find_reverse_tuple_counts
relation P682
type Q3249551
type Q181394
action count
action filter_type
action find_reverse
entity Q1057
relation P682
type Q181394
[ANSWER]
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q3249551'}]
SELECT DISTINCT ( COUNT ( ?i ) AS ?e ) WHERE { { SELECT DISTINCT ?i ( COUNT ( ?k ) AS ?w ) WHERE { ?k rdf:type ontology:Q181394 . ?i rdf:type ontology:Q3249551 . ?k property:P682 ?i } GROUP BY ?i } . { SELECT DISTINCT ( COUNT ( ?p ) AS ?b ) WHERE { ?p property:P682 resource:Q1057 . ?p rdf:type ontology:Q181394 } } . FILTER ( ?w < ?b ) }
locomotion G1/S transition of mitotic cell cycle growth biological regulation cell killing behavior developmental process cellular process immune system process response to stimulus signaling reproductive process rhythmic process meiotic nuclear division
14
action count
action less
action find_reverse_tuple_counts
relation biological process
type process
type nutrient
action count
action filter_type
action find_reverse
entity metabolic process
relation biological process
type nutrient
[{'concept': 'nutrient'}, 'biological process', {'concept': 'process'}]
SELECT DISTINCT ( COUNT ( ?i ) AS ?e ) WHERE { { SELECT DISTINCT ?i ( COUNT ( ?k ) AS ?w ) WHERE { ?k rdf:type ontology:nutrient . ?i rdf:type ontology:process . ?k property:biological_process ?i } GROUP BY ?i } . { SELECT DISTINCT ( COUNT ( ?p ) AS ?b ) WHERE { ?p property:biological_process resource:metabolic_process . ?p rdf:type ontology:nutrient } } . FILTER ( ?w < ?b ) }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Single entity type|Incomplete
Q14859560
P682
Q3249551 Q181394
USER
And how about response to stimulus?
(c(Q181394),P682,c(Q3249551))
action count
action less
action find_reverse_tuple_counts
relation P682
type Q3249551
type Q181394
action count
action filter_type
action find_reverse
entity Q14859560
relation P682
type Q181394
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q3249551'}]
SELECT DISTINCT ( COUNT ( ?m ) AS ?l ) WHERE { { SELECT DISTINCT ( COUNT ( ?r ) AS ?g ) WHERE { ?r property:P682 resource:Q14859560 . ?r rdf:type ontology:Q181394 } } . FILTER ( ?z < ?g ) . { SELECT DISTINCT ?m ( COUNT ( ?t ) AS ?z ) WHERE { ?t property:P682 ?m . ?m rdf:type ontology:Q3249551 . ?t rdf:type ontology:Q181394 } GROUP BY ?m } }
response to stimulus
action count
action less
action find_reverse_tuple_counts
relation biological process
type process
type nutrient
action count
action filter_type
action find_reverse
entity response to stimulus
relation biological process
type nutrient
[{'concept': 'nutrient'}, 'biological process', {'concept': 'process'}]
SELECT DISTINCT ( COUNT ( ?m ) AS ?l ) WHERE { { SELECT DISTINCT ( COUNT ( ?r ) AS ?g ) WHERE { ?r property:biological_process resource:response_to_stimulus . ?r rdf:type ontology:nutrient } } . FILTER ( ?z < ?g ) . { SELECT DISTINCT ?m ( COUNT ( ?t ) AS ?z ) WHERE { ?t property:biological_process ?m . ?m rdf:type ontology:process . ?t rdf:type ontology:nutrient } GROUP BY ?m } }
[]
process nutrient
SYSTEM
12
Q22269718 Q306383 Q14820058 Q22284496 Q22271548 Q9332 Q22293230 Q14873025 Q14865172 Q14885910 Q14864472 Q162925
(c(Q181394),P682,c(Q3249551))
action count
action less
action find_reverse_tuple_counts
relation P682
type Q3249551
type Q181394
action count
action filter_type
action find_reverse
entity Q14859560
relation P682
type Q181394
[ANSWER]
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q3249551'}]
SELECT DISTINCT ( COUNT ( ?m ) AS ?l ) WHERE { { SELECT DISTINCT ( COUNT ( ?r ) AS ?g ) WHERE { ?r property:P682 resource:Q14859560 . ?r rdf:type ontology:Q181394 } } . FILTER ( ?z < ?g ) . { SELECT DISTINCT ?m ( COUNT ( ?t ) AS ?z ) WHERE { ?t property:P682 ?m . ?m rdf:type ontology:Q3249551 . ?t rdf:type ontology:Q181394 } GROUP BY ?m } }
locomotion G1/S transition of mitotic cell cycle growth biological regulation cell killing behavior developmental process cellular process signaling reproductive process rhythmic process meiotic nuclear division
12
action count
action less
action find_reverse_tuple_counts
relation biological process
type process
type nutrient
action count
action filter_type
action find_reverse
entity response to stimulus
relation biological process
type nutrient
[{'concept': 'nutrient'}, 'biological process', {'concept': 'process'}]
SELECT DISTINCT ( COUNT ( ?m ) AS ?l ) WHERE { { SELECT DISTINCT ( COUNT ( ?r ) AS ?g ) WHERE { ?r property:biological_process resource:response_to_stimulus . ?r rdf:type ontology:nutrient } } . FILTER ( ?z < ?g ) . { SELECT DISTINCT ?m ( COUNT ( ?t ) AS ?z ) WHERE { ?t property:biological_process ?m . ?m rdf:type ontology:process . ?t rdf:type ontology:nutrient } GROUP BY ?m } }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23488759
P681
Q15989253
USER
Which is the part that is a component of gamma-glutamyl phosphate reductase    SSUBM407_1304 ?
(Q23488759,P681,c(Q15989253))
action filter_type
action find
entity Q23488759
relation P681
type Q15989253
['Q23488759', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?b WHERE { resource:Q23488759 property:P681 ?b . ?b rdf:type ontology:Q15989253 }
gamma-glutamyl phosphate reductase    SSUBM407_1304
action filter_type
action find
entity gamma-glutamyl phosphate reductase    SSUBM407_1304
relation cell component
type part
['gamma-glutamyl phosphate reductase    SSUBM407_1304', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?b WHERE { resource:gamma-glutamyl_phosphate_reductase____SSUBM407_1304 property:cell_component ?b . ?b rdf:type ontology:part }
[]
part
Q79899
SYSTEM
cytoplasm
Q79899
(Q23488759,P681,c(Q15989253))
action filter_type
action find
entity Q23488759
relation P681
type Q15989253
[ANSWER] is the part that is a component of gamma-glutamyl phosphate reductase SSUBM407_1304
['Q23488759', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?b WHERE { resource:Q23488759 property:P681 ?b . ?b rdf:type ontology:Q15989253 }
cytoplasm
Cytoplasm is the part that is a component of gamma-glutamyl phosphate reductase SSUBM407_1304
cytoplasm
action filter_type
action find
entity gamma-glutamyl phosphate reductase    SSUBM407_1304
relation cell component
type part
['gamma-glutamyl phosphate reductase    SSUBM407_1304', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?b WHERE { resource:gamma-glutamyl_phosphate_reductase____SSUBM407_1304 property:cell_component ?b . ?b rdf:type ontology:part }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q27761538
Q15989253
USER
And what about Mg/Co/Ni transporter    Mfl217?
(Q27761538,P681,c(Q15989253))
action filter_type
action find
entity Q27761538
relation P681
type Q15989253
['Q27761538', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?n WHERE { resource:Q27761538 property:P681 ?n . ?n rdf:type ontology:Q15989253 }
Mg/Co/Ni transporter    Mfl217
action filter_type
action find
entity Mg/Co/Ni transporter    Mfl217
relation cell component
type part
['Mg/Co/Ni transporter    Mfl217', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?n WHERE { resource:Mg/Co/Ni_transporter____Mfl217 property:cell_component ?n . ?n rdf:type ontology:part }
[]
part
Q14349455
SYSTEM
membrane
Q14349455
(Q27761538,P681,c(Q15989253))
action filter_type
action find
entity Q27761538
relation P681
type Q15989253
[ANSWER]
['Q27761538', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?n WHERE { resource:Q27761538 property:P681 ?n . ?n rdf:type ontology:Q15989253 }
membrane
membrane
action filter_type
action find
entity Mg/Co/Ni transporter    Mfl217
relation cell component
type part
['Mg/Co/Ni transporter    Mfl217', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?n WHERE { resource:Mg/Co/Ni_transporter____Mfl217 property:cell_component ?n . ?n rdf:type ontology:part }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q21124920
Q15989253
USER
And what about Plexin domain-containing protein 1?
(Q21124920,P681,c(Q15989253))
action filter_type
action find
entity Q21124920
relation P681
type Q15989253
['Q21124920', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?d WHERE { resource:Q21124920 property:P681 ?d . ?d rdf:type ontology:Q15989253 }
Plexin domain-containing protein 1
action filter_type
action find
entity Plexin domain-containing protein 1
relation cell component
type part
['Plexin domain-containing protein 1', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?d WHERE { resource:Plexin_domain-containing_protein_1 property:cell_component ?d . ?d rdf:type ontology:part }
[]
part
Q189073 Q14645596 Q14349455
SYSTEM
cell junction, extracellular region, membrane
Q189073 Q14645596 Q14349455 Q79899
(Q21124920,P681,c(Q15989253))
action filter_type
action find
entity Q21124920
relation P681
type Q15989253
[ANSWERS]
['Q21124920', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?d WHERE { resource:Q21124920 property:P681 ?d . ?d rdf:type ontology:Q15989253 }
cell junction extracellular region membrane cytoplasm
cell junction extracellular region membrane
action filter_type
action find
entity Plexin domain-containing protein 1
relation cell component
type part
['Plexin domain-containing protein 1', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?d WHERE { resource:Plexin_domain-containing_protein_1 property:cell_component ?d . ?d rdf:type ontology:part }
[]