Simple Question (Direct)
Simple Question
Q23440200
P682
Q1057
USER
Which metabolic processes are aldehyde dehydrogenase    VPA0761 involved in ?
(Q23440200,P682,c(Q1057))
action filter_type
action find
entity Q23440200
relation P682
type Q1057
['Q23440200', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?v WHERE { resource:Q23440200 property:P682 ?v . ?v rdf:type ontology:Q1057 }
aldehyde dehydrogenase    VPA0761
action filter_type
action find
entity aldehyde dehydrogenase    VPA0761
relation biological process
type metabolic process
['aldehyde dehydrogenase    VPA0761', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?v WHERE { resource:aldehyde_dehydrogenase____VPA0761 property:biological_process ?v . ?v rdf:type ontology:metabolic_process }
[]
metabolic process
Q14349764 Q21097138
SYSTEM
oxidation-reduction process, cellular aldehyde metabolic process
Q14349764 Q21097138
(Q23440200,P682,c(Q1057))
action filter_type
action find
entity Q23440200
relation P682
type Q1057
[ANSWERS] are aldehyde dehydrogenase VPA0761 involved in
['Q23440200', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?v WHERE { resource:Q23440200 property:P682 ?v . ?v rdf:type ontology:Q1057 }
oxidation-reduction process cellular aldehyde metabolic process
Oxidation-reduction process and cellular aldehyde metabolic process are aldehyde dehydrogenase VPA0761 involved in
oxidation-reduction process cellular aldehyde metabolic process
action filter_type
action find
entity aldehyde dehydrogenase    VPA0761
relation biological process
type metabolic process
['aldehyde dehydrogenase    VPA0761', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?v WHERE { resource:aldehyde_dehydrogenase____VPA0761 property:biological_process ?v . ?v rdf:type ontology:metabolic_process }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23440200
P688
Q863908
USER
Which nucleic acid sequence encodes aldehyde dehydrogenase    VPA0761 ?
(c(Q863908),P688,Q23440200)
action filter_type
action find_reverse
entity Q23440200
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q23440200']
SELECT DISTINCT ?e WHERE { ?e property:P688 resource:Q23440200 . ?e rdf:type ontology:Q863908 }
aldehyde dehydrogenase    VPA0761
action filter_type
action find_reverse
entity aldehyde dehydrogenase    VPA0761
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'aldehyde dehydrogenase    VPA0761']
SELECT DISTINCT ?e WHERE { ?e property:encodes resource:aldehyde_dehydrogenase____VPA0761 . ?e rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23157014
SYSTEM
aldehyde dehydrogenase    VPA0761
Q23157014
(c(Q863908),P688,Q23440200)
action filter_type
action find_reverse
entity Q23440200
relation P688
type Q863908
Aldehyde dehydrogenase VPA0761 encodes aldehyde dehydrogenase VPA0761
[{'concept': 'Q863908'}, 'P688', 'Q23440200']
SELECT DISTINCT ?e WHERE { ?e property:P688 resource:Q23440200 . ?e rdf:type ontology:Q863908 }
aldehyde dehydrogenase    VPA0761
Aldehyde dehydrogenase VPA0761 encodes aldehyde dehydrogenase VPA0761
aldehyde dehydrogenase    VPA0761
action filter_type
action find_reverse
entity aldehyde dehydrogenase    VPA0761
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'aldehyde dehydrogenase    VPA0761']
SELECT DISTINCT ?e WHERE { ?e property:encodes resource:aldehyde_dehydrogenase____VPA0761 . ?e rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23157014
P702
Q181394
USER
What is encoded by that nucleic acid sequence ?
(c(Q181394),P702,Q23157014)
action filter_type
action find_reverse
entity Q23157014
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q23157014']
SELECT DISTINCT ?g WHERE { ?g rdf:type ontology:Q181394 . ?g property:P702 resource:Q23157014 }
aldehyde dehydrogenase    VPA0761
action filter_type
action find_reverse
entity aldehyde dehydrogenase    VPA0761
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'aldehyde dehydrogenase    VPA0761']
SELECT DISTINCT ?g WHERE { ?g rdf:type ontology:nutrient . ?g property:encoded_by resource:aldehyde_dehydrogenase____VPA0761 }
[]
nutrient
Q23440200
SYSTEM
aldehyde dehydrogenase    VPA0761
Q23440200
(c(Q181394),P702,Q23157014)
action filter_type
action find_reverse
entity Q23157014
relation P702
type Q181394
The aldehyde dehydrogenase VPA0761 is encoded by that nucleic acid sequence
[{'concept': 'Q181394'}, 'P702', 'Q23157014']
SELECT DISTINCT ?g WHERE { ?g rdf:type ontology:Q181394 . ?g property:P702 resource:Q23157014 }
aldehyde dehydrogenase    VPA0761
The aldehyde dehydrogenase VPA0761 is encoded by that nucleic acid sequence
aldehyde dehydrogenase    VPA0761
action filter_type
action find_reverse
entity aldehyde dehydrogenase    VPA0761
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'aldehyde dehydrogenase    VPA0761']
SELECT DISTINCT ?g WHERE { ?g rdf:type ontology:nutrient . ?g property:encoded_by resource:aldehyde_dehydrogenase____VPA0761 }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23157014
P703
Q631147
USER
What is the taxon to which that nucleic acid sequence belongs to ?
(Q23440200,P703,c(Q631147))
action filter_type
action find
entity Q23157014
relation P703
type Q631147
['Q23440200', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?l WHERE { resource:Q23157014 property:P703 ?l . ?l rdf:type ontology:Q631147 }
aldehyde dehydrogenase    VPA0761
action filter_type
action find
entity aldehyde dehydrogenase    VPA0761
relation found in taxon
type infraspecific name
['aldehyde dehydrogenase    VPA0761', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?l WHERE { resource:aldehyde_dehydrogenase____VPA0761 property:found_in_taxon ?l . ?l rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102947
SYSTEM
Vibrio parahaemolyticus RIMD 2210633
Q21102947
(Q23440200,P703,c(Q631147))
action filter_type
action find
entity Q23157014
relation P703
type Q631147
[ANSWER]
['Q23440200', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?l WHERE { resource:Q23157014 property:P703 ?l . ?l rdf:type ontology:Q631147 }
Vibrio parahaemolyticus RIMD 2210633
Vibrio parahaemolyticus RIMD 2210633
Vibrio parahaemolyticus RIMD 2210633
action filter_type
action find
entity aldehyde dehydrogenase    VPA0761
relation found in taxon
type infraspecific name
['aldehyde dehydrogenase    VPA0761', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?l WHERE { resource:aldehyde_dehydrogenase____VPA0761 property:found_in_taxon ?l . ?l rdf:type ontology:infraspecific_name }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q23279405
Q631147
USER
And how about hypothetical protein    AMED_6431?
(Q23279405,P703,c(Q631147))
action filter_type
action find
entity Q23279405
relation P703
type Q631147
['Q23279405', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?e WHERE { resource:Q23279405 property:P703 ?e . ?e rdf:type ontology:Q631147 }
hypothetical protein    AMED_6431
action filter_type
action find
entity hypothetical protein    AMED_6431
relation found in taxon
type infraspecific name
['hypothetical protein    AMED_6431', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?e WHERE { resource:hypothetical_protein____AMED_6431 property:found_in_taxon ?e . ?e rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102998
SYSTEM
Amycolatopsis mediterranei U32
Q21102998
(Q23279405,P703,c(Q631147))
action filter_type
action find
entity Q23279405
relation P703
type Q631147
[ANSWER]
['Q23279405', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?e WHERE { resource:Q23279405 property:P703 ?e . ?e rdf:type ontology:Q631147 }
Amycolatopsis mediterranei U32
Amycolatopsis mediterranei U32
action filter_type
action find
entity hypothetical protein    AMED_6431
relation found in taxon
type infraspecific name
['hypothetical protein    AMED_6431', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?e WHERE { resource:hypothetical_protein____AMED_6431 property:found_in_taxon ?e . ?e rdf:type ontology:infraspecific_name }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Single entity type
Q14864005
P682
Q2996394 Q181394
USER
How many biological processes are less number of nutrients involved in than ovulation cycle ?
(c(Q181394),P682,c(Q2996394))
action count
action less
action find_reverse_tuple_counts
relation P682
type Q2996394
type Q181394
action count
action filter_type
action find_reverse
entity Q14864005
relation P682
type Q181394
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ( COUNT ( ?e ) AS ?j ) WHERE { FILTER ( ?d < ?n ) . { SELECT DISTINCT ( COUNT ( ?f ) AS ?n ) WHERE { ?f property:P682 resource:Q14864005 . ?f rdf:type ontology:Q181394 } } . { SELECT DISTINCT ?e ( COUNT ( ?q ) AS ?d ) WHERE { ?q property:P682 ?e . ?e rdf:type ontology:Q2996394 . ?q rdf:type ontology:Q181394 } GROUP BY ?e } }
ovulation cycle
action count
action less
action find_reverse_tuple_counts
relation biological process
type biological process
type nutrient
action count
action filter_type
action find_reverse
entity ovulation cycle
relation biological process
type nutrient
[{'concept': 'nutrient'}, 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ( COUNT ( ?e ) AS ?j ) WHERE { FILTER ( ?d < ?n ) . { SELECT DISTINCT ( COUNT ( ?f ) AS ?n ) WHERE { ?f property:biological_process resource:ovulation_cycle . ?f rdf:type ontology:nutrient } } . { SELECT DISTINCT ?e ( COUNT ( ?q ) AS ?d ) WHERE { ?q property:biological_process ?e . ?e rdf:type ontology:biological_process . ?q rdf:type ontology:nutrient } GROUP BY ?e } }
[]
biological process nutrient
SYSTEM
82
Q22294591 Q21172195 Q14862258 Q21107328 Q22295734 Q14904219 Q22271492 Q22271494 Q14864899 Q22294585 Q21122953 Q21104659 Q22294349 Q15325345 Q22269626 Q24459941 Q21438150 Q14897640 Q21114926 Q14865609 Q21116174 Q14864099 Q21444598 Q21136671 Q21111890 Q22253821 Q14863654 Q21109007 Q22271536 Q22279989 Q21127160 Q14865397 Q14859996 Q14865659 Q22294730 Q21171796 Q21120908 Q22271501 Q22281166 Q14908045 Q14863467 Q21105147 Q21123910 Q15320925 Q22298156 Q22271697 Q22269715 Q21119405 Q21130764 Q333666 Q21418091 Q14864443 Q21124921 Q14904764 Q21104990 Q22250139 Q14863667 Q21108563 Q21111494 Q17304930 Q22284328 Q21108938 Q21106266 Q14907898 Q22271479 Q22272219 Q14904772 Q14904771 Q14912956 Q21108839 Q22279704 Q14863453 Q21102309 Q22269699 Q22284230 Q21115753 Q24459846 Q22274350 Q21115817 Q21104842 Q21132115 Q21114820
(c(Q181394),P682,c(Q2996394))
action count
action less
action find_reverse_tuple_counts
relation P682
type Q2996394
type Q181394
action count
action filter_type
action find_reverse
entity Q14864005
relation P682
type Q181394
[ANSWER]
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ( COUNT ( ?e ) AS ?j ) WHERE { FILTER ( ?d < ?n ) . { SELECT DISTINCT ( COUNT ( ?f ) AS ?n ) WHERE { ?f property:P682 resource:Q14864005 . ?f rdf:type ontology:Q181394 } } . { SELECT DISTINCT ?e ( COUNT ( ?q ) AS ?d ) WHERE { ?q property:P682 ?e . ?e rdf:type ontology:Q2996394 . ?q rdf:type ontology:Q181394 } GROUP BY ?e } }
mitotic cell cycle arrest in response to pheromone positive regulation of growth factor dependent skeletal muscle satellite cell proliferation dopamine uptake involved in synaptic transmission development involved in symbiotic interaction leukocyte activation developmental process involved in reproduction detoxification of zinc ion detoxification of arsenic-containing substance acrosome matrix dispersal adaptation of signaling pathway by response to pheromone involved in conjugation with cellular fusion male pronucleus assembly detoxification of nitrogen compound dormancy process pronuclear fusion single-organism developmental process manchette assembly protein activation cascade synaptic vesicle docking complement-dependent cytotoxicity myeloid cell homeostasis synaptic vesicle targeting ovulation cycle process positive regulation of flagellated sperm motility involved in capacitation female pronucleus assembly synaptic vesicle priming regulation of transcription involved in meiotic cell cycle multicellular organismal reproductive process developmental induction response to pheromone involved in conjugation with cellular fusion gene conversion at mating-type locus, DNA double-strand break processing fertilization, exchange of chromosomal proteins T cell selection mesenchymal smoothened signaling pathway involved in prostate gland development tolerance induction karyogamy involved in conjugation with cellular fusion nitric oxide storage cellular localization multi-organism cellular process gene conversion at mating-type locus, DNA double-strand break formation menstrual cycle phase immune system development single organism reproductive process leukocyte mediated cytotoxicity locomotion involved in locomotory behavior maintenance of cell number activation of immune response budding cell bud growth single-organism behavior ultradian rhythm abscission antibody-dependent cellular cytotoxicity response to inactivity P granule organization primary ovarian follicle growth spermatid nucleus differentiation meiotic cell cycle process rhythmic behavior cellular response to stimulus activation of meiosis involved in egg activation cell cycle process peptide mating pheromone maturation involved in conjugation with cellular fusion preantral ovarian follicle growth carbohydrate utilization response to other organism mycothiol-dependent detoxification detection of stimulus spermatogenesis, exchange of chromosomal proteins sperm chromatin condensation ovarian cumulus expansion adhesion of symbiont to host gene conversion at mating-type locus, DNA repair synthesis leukocyte homeostasis response to abiotic stimulus growth involved in symbiotic interaction cell wall organization or biogenesis behavioral response to nutrient intermicrovillar adhesion phenotypic switching directional locomotion chromosome localization to nuclear envelope involved in homologous chromosome segregation prevention of polyspermy spermatid nucleus elongation
82
action count
action less
action find_reverse_tuple_counts
relation biological process
type biological process
type nutrient
action count
action filter_type
action find_reverse
entity ovulation cycle
relation biological process
type nutrient
[{'concept': 'nutrient'}, 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ( COUNT ( ?e ) AS ?j ) WHERE { FILTER ( ?d < ?n ) . { SELECT DISTINCT ( COUNT ( ?f ) AS ?n ) WHERE { ?f property:biological_process resource:ovulation_cycle . ?f rdf:type ontology:nutrient } } . { SELECT DISTINCT ?e ( COUNT ( ?q ) AS ?d ) WHERE { ?q property:biological_process ?e . ?e rdf:type ontology:biological_process . ?q rdf:type ontology:nutrient } GROUP BY ?e } }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Single entity type|Incomplete
Q22271494
P682
Q2996394 Q181394
USER
And also tell me about detoxification of arsenic-containing substance?
(c(Q181394),P682,c(Q2996394))
action count
action less
action find_reverse_tuple_counts
relation P682
type Q2996394
type Q181394
action count
action filter_type
action find_reverse
entity Q22271494
relation P682
type Q181394
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ( COUNT ( ?i ) AS ?c ) WHERE { { SELECT DISTINCT ?i ( COUNT ( ?t ) AS ?z ) WHERE { ?t property:P682 ?i . ?i rdf:type ontology:Q2996394 . ?t rdf:type ontology:Q181394 } GROUP BY ?i } . { SELECT DISTINCT ( COUNT ( ?w ) AS ?j ) WHERE { ?w property:P682 resource:Q22271494 . ?w rdf:type ontology:Q181394 } } . FILTER ( ?z < ?j ) }
detoxification of arsenic-containing substance
action count
action less
action find_reverse_tuple_counts
relation biological process
type biological process
type nutrient
action count
action filter_type
action find_reverse
entity detoxification of arsenic-containing substance
relation biological process
type nutrient
[{'concept': 'nutrient'}, 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ( COUNT ( ?i ) AS ?c ) WHERE { { SELECT DISTINCT ?i ( COUNT ( ?t ) AS ?z ) WHERE { ?t property:biological_process ?i . ?i rdf:type ontology:biological_process . ?t rdf:type ontology:nutrient } GROUP BY ?i } . { SELECT DISTINCT ( COUNT ( ?w ) AS ?j ) WHERE { ?w property:biological_process resource:detoxification_of_arsenic-containing_substance . ?w rdf:type ontology:nutrient } } . FILTER ( ?z < ?j ) }
[]
biological process nutrient
SYSTEM
47
Q22294591 Q21172195 Q21107328 Q22295734 Q22271492 Q14864899 Q21122953 Q21104659 Q22294349 Q15325345 Q22269626 Q24459941 Q21438150 Q21114926 Q21136671 Q22253821 Q21109007 Q22279989 Q21127160 Q14865397 Q14859996 Q14865659 Q21171796 Q21120908 Q22271501 Q22281166 Q14908045 Q21105147 Q21123910 Q22298156 Q22271697 Q21119405 Q21130764 Q21124921 Q14904764 Q22250139 Q14863667 Q21111494 Q17304930 Q14912956 Q22279704 Q21102309 Q22269699 Q21115753 Q24459846 Q22274350 Q21104842
(c(Q181394),P682,c(Q2996394))
action count
action less
action find_reverse_tuple_counts
relation P682
type Q2996394
type Q181394
action count
action filter_type
action find_reverse
entity Q22271494
relation P682
type Q181394
[ANSWER]
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ( COUNT ( ?i ) AS ?c ) WHERE { { SELECT DISTINCT ?i ( COUNT ( ?t ) AS ?z ) WHERE { ?t property:P682 ?i . ?i rdf:type ontology:Q2996394 . ?t rdf:type ontology:Q181394 } GROUP BY ?i } . { SELECT DISTINCT ( COUNT ( ?w ) AS ?j ) WHERE { ?w property:P682 resource:Q22271494 . ?w rdf:type ontology:Q181394 } } . FILTER ( ?z < ?j ) }
mitotic cell cycle arrest in response to pheromone positive regulation of growth factor dependent skeletal muscle satellite cell proliferation development involved in symbiotic interaction leukocyte activation detoxification of zinc ion acrosome matrix dispersal male pronucleus assembly detoxification of nitrogen compound dormancy process pronuclear fusion single-organism developmental process manchette assembly protein activation cascade complement-dependent cytotoxicity female pronucleus assembly regulation of transcription involved in meiotic cell cycle developmental induction gene conversion at mating-type locus, DNA double-strand break processing fertilization, exchange of chromosomal proteins T cell selection mesenchymal smoothened signaling pathway involved in prostate gland development tolerance induction nitric oxide storage cellular localization multi-organism cellular process gene conversion at mating-type locus, DNA double-strand break formation menstrual cycle phase single organism reproductive process leukocyte mediated cytotoxicity maintenance of cell number activation of immune response single-organism behavior ultradian rhythm P granule organization primary ovarian follicle growth meiotic cell cycle process rhythmic behavior activation of meiosis involved in egg activation cell cycle process ovarian cumulus expansion gene conversion at mating-type locus, DNA repair synthesis response to abiotic stimulus growth involved in symbiotic interaction behavioral response to nutrient intermicrovillar adhesion phenotypic switching chromosome localization to nuclear envelope involved in homologous chromosome segregation
47
action count
action less
action find_reverse_tuple_counts
relation biological process
type biological process
type nutrient
action count
action filter_type
action find_reverse
entity detoxification of arsenic-containing substance
relation biological process
type nutrient
[{'concept': 'nutrient'}, 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ( COUNT ( ?i ) AS ?c ) WHERE { { SELECT DISTINCT ?i ( COUNT ( ?t ) AS ?z ) WHERE { ?t property:biological_process ?i . ?i rdf:type ontology:biological_process . ?t rdf:type ontology:nutrient } GROUP BY ?i } . { SELECT DISTINCT ( COUNT ( ?w ) AS ?j ) WHERE { ?w property:biological_process resource:detoxification_of_arsenic-containing_substance . ?w rdf:type ontology:nutrient } } . FILTER ( ?z < ?j ) }
[]