Simple Question (Direct)
Simple Question
Q21132221
P681
Q15989253
USER
Which is the part that is a component of EMILIN-2 ?
(Q21132221,P681,c(Q15989253))
action filter_type
action find
entity Q21132221
relation P681
type Q15989253
['Q21132221', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?v WHERE { resource:Q21132221 property:P681 ?v . ?v rdf:type ontology:Q15989253 }
EMILIN-2
action filter_type
action find
entity EMILIN-2
relation cell component
type part
['EMILIN-2', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?v WHERE { resource:EMILIN-2 property:cell_component ?v . ?v rdf:type ontology:part }
[]
part
Q14645596
SYSTEM
extracellular region
Q14645596
(Q21132221,P681,c(Q15989253))
action filter_type
action find
entity Q21132221
relation P681
type Q15989253
The part that is a component of EMILIN-2 is an [ANSWER]
['Q21132221', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?v WHERE { resource:Q21132221 property:P681 ?v . ?v rdf:type ontology:Q15989253 }
extracellular region
The part that is a component of EMILIN-2 is an extracellular region
extracellular region
action filter_type
action find
entity EMILIN-2
relation cell component
type part
['EMILIN-2', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?v WHERE { resource:EMILIN-2 property:cell_component ?v . ?v rdf:type ontology:part }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type
Q21132221
P688
Q863908
USER
How many nucleic acid sequences encodes EMILIN-2 ?
(c(Q863908),P688,Q21132221)
action count
action filter_type
action find_reverse
entity Q21132221
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q21132221']
SELECT DISTINCT ( COUNT ( ?m ) AS ?b ) WHERE { ?m property:P688 resource:Q21132221 . ?m rdf:type ontology:Q863908 }
EMILIN-2
action count
action filter_type
action find_reverse
entity EMILIN-2
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'EMILIN-2']
SELECT DISTINCT ( COUNT ( ?m ) AS ?b ) WHERE { ?m property:encodes resource:EMILIN-2 . ?m rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
SYSTEM
1
Q18047362
(c(Q863908),P688,Q21132221)
action count
action filter_type
action find_reverse
entity Q21132221
relation P688
type Q863908
[ANSWER]
[{'concept': 'Q863908'}, 'P688', 'Q21132221']
SELECT DISTINCT ( COUNT ( ?m ) AS ?b ) WHERE { ?m property:P688 resource:Q21132221 . ?m rdf:type ontology:Q863908 }
EMILIN2
1
action count
action filter_type
action find_reverse
entity EMILIN-2
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'EMILIN-2']
SELECT DISTINCT ( COUNT ( ?m ) AS ?b ) WHERE { ?m property:encodes resource:EMILIN-2 . ?m rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23453717
P688
Q863908
USER
What is the nucleic acid sequence that is encoded by hypothetical protein    BF1135 ?
(c(Q863908),P688,Q23453717)
action filter_type
action find_reverse
entity Q23453717
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q23453717']
SELECT DISTINCT ?y WHERE { ?y property:P688 resource:Q23453717 . ?y rdf:type ontology:Q863908 }
hypothetical protein    BF1135
action filter_type
action find_reverse
entity hypothetical protein    BF1135
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'hypothetical protein    BF1135']
SELECT DISTINCT ?y WHERE { ?y property:encodes resource:hypothetical_protein____BF1135 . ?y rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23112278
SYSTEM
hypothetical protein    BF1135
Q23112278
(c(Q863908),P688,Q23453717)
action filter_type
action find_reverse
entity Q23453717
relation P688
type Q863908
The nucleic acid sequence that is encoded by hypothetical protein BF 1135 is by hypothetical protein BF1135
[{'concept': 'Q863908'}, 'P688', 'Q23453717']
SELECT DISTINCT ?y WHERE { ?y property:P688 resource:Q23453717 . ?y rdf:type ontology:Q863908 }
hypothetical protein    BF1135
The nucleic acid sequence that is encoded by hypothetical protein BF 1135 is by hypothetical protein BF1135
hypothetical protein    BF1135
action filter_type
action find_reverse
entity hypothetical protein    BF1135
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'hypothetical protein    BF1135']
SELECT DISTINCT ?y WHERE { ?y property:encodes resource:hypothetical_protein____BF1135 . ?y rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23453717
P703
Q631147
USER
Where is that nutrient found ?
(Q23112278,P703,c(Q631147))
action filter_type
action find
entity Q23453717
relation P703
type Q631147
['Q23112278', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?h WHERE { resource:Q23453717 property:P703 ?h . ?h rdf:type ontology:Q631147 }
hypothetical protein    BF1135
action filter_type
action find
entity hypothetical protein    BF1135
relation found in taxon
type infraspecific name
['hypothetical protein    BF1135', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?h WHERE { resource:hypothetical_protein____BF1135 property:found_in_taxon ?h . ?h rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102950
SYSTEM
Bacteroides fragilis YCH46
Q21102950
(Q23112278,P703,c(Q631147))
action filter_type
action find
entity Q23453717
relation P703
type Q631147
That nutrient is found in [ANSWER]
['Q23112278', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?h WHERE { resource:Q23453717 property:P703 ?h . ?h rdf:type ontology:Q631147 }
Bacteroides fragilis YCH46
That nutrient is found in Bacteroides fragilis YCH46
Bacteroides fragilis YCH46
action filter_type
action find
entity hypothetical protein    BF1135
relation found in taxon
type infraspecific name
['hypothetical protein    BF1135', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?h WHERE { resource:hypothetical_protein____BF1135 property:found_in_taxon ?h . ?h rdf:type ontology:infraspecific_name }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q21102950 Q20976113
P703
Q863908
USER
Is RNU6-657P found in the taxon that infraspecific name ?
(Q20976113,P703,Q21102950)
action is_in
entity Q20976113
action find
entity Q21102950
relation P703
['Q20976113', 'P703', 'Q21102950']
ASK WHERE { resource:Q21102950 property:P703 resource:Q20976113 }
Bacteroides fragilis YCH46 RNU6-657P
action is_in
entity RNU6-657P
action find
entity Bacteroides fragilis YCH46
relation found in taxon
['RNU6-657P', 'found in taxon', 'Bacteroides fragilis YCH46']
ASK WHERE { resource:Bacteroides_fragilis_YCH46 property:found_in_taxon resource:RNU6-657P }
[]
nucleic acid sequence
SYSTEM
NO
(Q20976113,P703,Q21102950)
action is_in
entity Q20976113
action find
entity Q21102950
relation P703
[ANSWER]
['Q20976113', 'P703', 'Q21102950']
ASK WHERE { resource:Q21102950 property:P703 resource:Q20976113 }
No
action is_in
entity RNU6-657P
action find
entity Bacteroides fragilis YCH46
relation found in taxon
['RNU6-657P', 'found in taxon', 'Bacteroides fragilis YCH46']
ASK WHERE { resource:Bacteroides_fragilis_YCH46 property:found_in_taxon resource:RNU6-657P }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q24276953 Q23453717
P702
Q863908
USER
Which nucleic acid sequences encode hypothetical protein    BF1135 or DNA single-strand annealing protein, essential recombination function protein Erf    O3K_07615 ?
OR((Q23453717,P702,c(Q863908)), (Q24276953,P702,c(Q863908)))
action filter_type
action union
action find
entity Q23453717
relation P702
action find
entity Q24276953
relation P702
type Q863908
{'OR': [['Q23453717', 'P702', {'concept': 'Q863908'}], ['Q24276953', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?s WHERE { { { resource:Q24276953 property:P702 ?s } UNION { resource:Q23453717 property:P702 ?s } } . ?s rdf:type ontology:Q863908 }
DNA single-strand annealing protein, essential recombination function protein Erf    O3K_07615 hypothetical protein    BF1135
action filter_type
action union
action find
entity hypothetical protein    BF1135
relation encoded by
action find
entity DNA single-strand annealing protein, essential recombination function protein Erf    O3K_07615
relation encoded by
type nucleic acid sequence
{'OR': [['hypothetical protein    BF1135', 'encoded by', {'concept': 'nucleic acid sequence'}], ['DNA single-strand annealing protein, essential recombination function protein Erf    O3K_07615', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?s WHERE { { { resource:DNA_single-strand_annealing_protein,_essential_recombination_function_protein_Erf____O3K_07615 property:encoded_by ?s } UNION { resource:hypothetical_protein____BF1135 property:encoded_by ?s } } . ?s rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23108764 Q23112278
SYSTEM
DNA single-strand annealing protein, essential recombination function protein Erf    O3K_07615, hypothetical protein    BF1135
Q23108764 Q23112278
OR((Q23453717,P702,c(Q863908)), (Q24276953,P702,c(Q863908)))
action filter_type
action union
action find
entity Q23453717
relation P702
action find
entity Q24276953
relation P702
type Q863908
[ANSWERS]
{'OR': [['Q23453717', 'P702', {'concept': 'Q863908'}], ['Q24276953', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?s WHERE { { { resource:Q24276953 property:P702 ?s } UNION { resource:Q23453717 property:P702 ?s } } . ?s rdf:type ontology:Q863908 }
DNA single-strand annealing protein, essential recombination function protein Erf    O3K_07615 hypothetical protein    BF1135
DNA single-strand annealing protein, essential recombination function protein Erf O3K 07615 and hypothetical protein BF1135 encode hypothetical protein BF1135 or DNA single-strand annealing protein, essential recombination function protein Erf O3K_07615
DNA single-strand annealing protein, essential recombination function protein Erf    O3K_07615 hypothetical protein    BF1135
action filter_type
action union
action find
entity hypothetical protein    BF1135
relation encoded by
action find
entity DNA single-strand annealing protein, essential recombination function protein Erf    O3K_07615
relation encoded by
type nucleic acid sequence
{'OR': [['hypothetical protein    BF1135', 'encoded by', {'concept': 'nucleic acid sequence'}], ['DNA single-strand annealing protein, essential recombination function protein Erf    O3K_07615', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?s WHERE { { { resource:DNA_single-strand_annealing_protein,_essential_recombination_function_protein_Erf____O3K_07615 property:encoded_by ?s } UNION { resource:hypothetical_protein____BF1135 property:encoded_by ?s } } . ?s rdf:type ontology:nucleic_acid_sequence }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23102493 Q23108764
P688
Q181394
USER
Which nutrients are encoded by DNA single-strand annealing protein, essential recombination function protein Erf    O3K_07615 or regulatory protein AmpE    NRG857_00555 ?
OR((Q23108764,P688,c(Q181394)), (Q23102493,P688,c(Q181394)))
action filter_type
action union
action find
entity Q23108764
relation P688
action find
entity Q23102493
relation P688
type Q181394
{'OR': [['Q23108764', 'P688', {'concept': 'Q181394'}], ['Q23102493', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?f WHERE { { { resource:Q23102493 property:P688 ?f } UNION { resource:Q23108764 property:P688 ?f } } . ?f rdf:type ontology:Q181394 }
regulatory protein AmpE    NRG857_00555 DNA single-strand annealing protein, essential recombination function protein Erf    O3K_07615
action filter_type
action union
action find
entity DNA single-strand annealing protein, essential recombination function protein Erf    O3K_07615
relation encodes
action find
entity regulatory protein AmpE    NRG857_00555
relation encodes
type nutrient
{'OR': [['DNA single-strand annealing protein, essential recombination function protein Erf    O3K_07615', 'encodes', {'concept': 'nutrient'}], ['regulatory protein AmpE    NRG857_00555', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?f WHERE { { { resource:regulatory_protein_AmpE____NRG857_00555 property:encodes ?f } UNION { resource:DNA_single-strand_annealing_protein,_essential_recombination_function_protein_Erf____O3K_07615 property:encodes ?f } } . ?f rdf:type ontology:nutrient }
[]
nutrient
Q24276953 Q24153062
SYSTEM
DNA single-strand annealing protein, essential recombination function protein Erf    O3K_07615, regulatory protein AmpE    NRG857_00555
Q24276953 Q24153062
OR((Q23108764,P688,c(Q181394)), (Q23102493,P688,c(Q181394)))
action filter_type
action union
action find
entity Q23108764
relation P688
action find
entity Q23102493
relation P688
type Q181394
[ANSWERS]
{'OR': [['Q23108764', 'P688', {'concept': 'Q181394'}], ['Q23102493', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?f WHERE { { { resource:Q23102493 property:P688 ?f } UNION { resource:Q23108764 property:P688 ?f } } . ?f rdf:type ontology:Q181394 }
DNA single-strand annealing protein, essential recombination function protein Erf    O3K_07615 regulatory protein AmpE    NRG857_00555
DNA single-strand annealing protein, essential recombination function protein Erf O3K 07615 and regulatory protein AmpE NRG857 00555 are encoded by DNA single-strand annealing protein, essential recombination function protein Erf O3K_07615 or regulatory protein AmpE NRG857_00555
DNA single-strand annealing protein, essential recombination function protein Erf    O3K_07615 regulatory protein AmpE    NRG857_00555
action filter_type
action union
action find
entity DNA single-strand annealing protein, essential recombination function protein Erf    O3K_07615
relation encodes
action find
entity regulatory protein AmpE    NRG857_00555
relation encodes
type nutrient
{'OR': [['DNA single-strand annealing protein, essential recombination function protein Erf    O3K_07615', 'encodes', {'concept': 'nutrient'}], ['regulatory protein AmpE    NRG857_00555', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?f WHERE { { { resource:regulatory_protein_AmpE____NRG857_00555 property:encodes ?f } UNION { resource:DNA_single-strand_annealing_protein,_essential_recombination_function_protein_Erf____O3K_07615 property:encodes ?f } } . ?f rdf:type ontology:nutrient }
[]