Simple Question (Direct)
Simple Question
Q27550057
P703
Q631147
USER
Where is Cup2p YGL166W found ?
(Q27550057,P703,c(Q631147))
action filter_type
action find
entity Q27550057
relation P703
type Q631147
['Q27550057', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:Q631147 . resource:Q27550057 property:P703 ?m }
Cup2p YGL166W
action filter_type
action find
entity Cup2p YGL166W
relation found in taxon
type infraspecific name
['Cup2p YGL166W', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:infraspecific_name . resource:Cup2p_YGL166W property:found_in_taxon ?m }
[]
infraspecific name
Q27510868
SYSTEM
Saccharomyces cerevisiae S288c
Q27510868
(Q27550057,P703,c(Q631147))
action filter_type
action find
entity Q27550057
relation P703
type Q631147
Cup2p YGL 166 is found in [ANSWER] W
['Q27550057', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:Q631147 . resource:Q27550057 property:P703 ?m }
Saccharomyces cerevisiae S288c
Cup2p YGL 166 is found in Saccharomyces cerevisiae S288c W
Saccharomyces cerevisiae S288c
action filter_type
action find
entity Cup2p YGL166W
relation found in taxon
type infraspecific name
['Cup2p YGL166W', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:infraspecific_name . resource:Cup2p_YGL166W property:found_in_taxon ?m }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q27550057
P680
Q44424
USER
Which the chemical bonds that represents the molecular function of that nutrient ?
(Q27510868,P680,c(Q44424))
action filter_type
action find
entity Q27550057
relation P680
type Q44424
['Q27510868', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?x WHERE { resource:Q27550057 property:P680 ?x . ?x rdf:type ontology:Q44424 }
Cup2p YGL166W
action filter_type
action find
entity Cup2p YGL166W
relation molecular function
type chemical bond
['Saccharomyces cerevisiae S288c', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?x WHERE { resource:Cup2p_YGL166W property:molecular_function ?x . ?x rdf:type ontology:chemical_bond }
[]
chemical bond
Q13667380 Q14817980
SYSTEM
metal ion binding, copper ion binding
Q13667380 Q14817980
(Q27510868,P680,c(Q44424))
action filter_type
action find
entity Q27550057
relation P680
type Q44424
Represents the [ANSWERS]
['Q27510868', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?x WHERE { resource:Q27550057 property:P680 ?x . ?x rdf:type ontology:Q44424 }
metal ion binding copper ion binding
Represents the metal ion binding and copper ion binding
metal ion binding copper ion binding
action filter_type
action find
entity Cup2p YGL166W
relation molecular function
type chemical bond
['Saccharomyces cerevisiae S288c', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?x WHERE { resource:Cup2p_YGL166W property:molecular_function ?x . ?x rdf:type ontology:chemical_bond }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q27550057
P681
Q15989253
USER
Which is the cell component of Cup2p YGL166W ?
(Q27550057,P681,c(Q15989253))
action filter_type
action find
entity Q27550057
relation P681
type Q15989253
['Q27550057', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?m WHERE { resource:Q27550057 property:P681 ?m . ?m rdf:type ontology:Q15989253 }
Cup2p YGL166W
action filter_type
action find
entity Cup2p YGL166W
relation cell component
type part
['Cup2p YGL166W', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?m WHERE { resource:Cup2p_YGL166W property:cell_component ?m . ?m rdf:type ontology:part }
[]
part
Q40260
SYSTEM
nucleus
Q40260
(Q27550057,P681,c(Q15989253))
action filter_type
action find
entity Q27550057
relation P681
type Q15989253
The cell component of Cup2p YGL 166W is the [ANSWER]
['Q27550057', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?m WHERE { resource:Q27550057 property:P681 ?m . ?m rdf:type ontology:Q15989253 }
nucleus
The cell component of Cup2p YGL 166W is the nucleus
nucleus
action filter_type
action find
entity Cup2p YGL166W
relation cell component
type part
['Cup2p YGL166W', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?m WHERE { resource:Cup2p_YGL166W property:cell_component ?m . ?m rdf:type ontology:part }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type
Q27550057
P702
Q863908
USER
How many nucleic acid sequences genes encode Cup2p YGL166W ?
(Q27550057,P702,c(Q863908))
action count
action filter_type
action find
entity Q27550057
relation P702
type Q863908
['Q27550057', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ( COUNT ( ?r ) AS ?k ) WHERE { resource:Q27550057 property:P702 ?r . ?r rdf:type ontology:Q863908 }
Cup2p YGL166W
action count
action filter_type
action find
entity Cup2p YGL166W
relation encoded by
type nucleic acid sequence
['Cup2p YGL166W', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ( COUNT ( ?r ) AS ?k ) WHERE { resource:Cup2p_YGL166W property:encoded_by ?r . ?r rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
SYSTEM
1
Q27542968
(Q27550057,P702,c(Q863908))
action count
action filter_type
action find
entity Q27550057
relation P702
type Q863908
[ANSWER]
['Q27550057', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ( COUNT ( ?r ) AS ?k ) WHERE { resource:Q27550057 property:P702 ?r . ?r rdf:type ontology:Q863908 }
Cup2p YGL166W
1
action count
action filter_type
action find
entity Cup2p YGL166W
relation encoded by
type nucleic acid sequence
['Cup2p YGL166W', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ( COUNT ( ?r ) AS ?k ) WHERE { resource:Cup2p_YGL166W property:encoded_by ?r . ?r rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q27743540
Q863908
USER
And also tell me about sulfate/thiosulfate import ATP-binding protein CysA    MSMEG_4520?
(Q27743540,P702,c(Q863908))
action filter_type
action find
entity Q27743540
relation P702
type Q863908
['Q27743540', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?c WHERE { resource:Q27743540 property:P702 ?c . ?c rdf:type ontology:Q863908 }
sulfate/thiosulfate import ATP-binding protein CysA    MSMEG_4520
action filter_type
action find
entity sulfate/thiosulfate import ATP-binding protein CysA    MSMEG_4520
relation encoded by
type nucleic acid sequence
['sulfate/thiosulfate import ATP-binding protein CysA    MSMEG_4520', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?c WHERE { resource:sulfate/thiosulfate_import_ATP-binding_protein_CysA____MSMEG_4520 property:encoded_by ?c . ?c rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23268829
SYSTEM
sulfate/thiosulfate import ATP-binding protein CysA    MSMEG_4520
Q23268829
(Q27743540,P702,c(Q863908))
action filter_type
action find
entity Q27743540
relation P702
type Q863908
[ANSWER]
['Q27743540', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?c WHERE { resource:Q27743540 property:P702 ?c . ?c rdf:type ontology:Q863908 }
sulfate/thiosulfate import ATP-binding protein CysA    MSMEG_4520
sulfate/thiosulfate import ATP-binding protein CysA    MSMEG_4520
action filter_type
action find
entity sulfate/thiosulfate import ATP-binding protein CysA    MSMEG_4520
relation encoded by
type nucleic acid sequence
['sulfate/thiosulfate import ATP-binding protein CysA    MSMEG_4520', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?c WHERE { resource:sulfate/thiosulfate_import_ATP-binding_protein_CysA____MSMEG_4520 property:encoded_by ?c . ?c rdf:type ontology:nucleic_acid_sequence }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q181394 Q79529 Q8386
USER
How many nutrients do atleast 70 chemical substances or drugs collaborate with ?
(c(Q79529)|c(Q8386),P129,c(Q181394))
action count
action atleast
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
value 70
[[{'concept': 'Q79529'}, {'concept': 'Q8386'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?l ) AS ?z ) WHERE { { SELECT DISTINCT ( COUNT ( ?p ) AS ?d ) ?l WHERE { { ?l rdf:type ontology:Q181394 . ?p rdf:type ontology:Q79529 . ?p property:P129 ?l } UNION { ?p property:P129 ?l . ?p rdf:type ontology:Q8386 . ?l rdf:type ontology:Q181394 } } GROUP BY ?l } . FILTER ( ?d >= 70 ) }
action count
action atleast
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
value 70
[[{'concept': 'chemical substance'}, {'concept': 'drug'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?l ) AS ?z ) WHERE { { SELECT DISTINCT ( COUNT ( ?p ) AS ?d ) ?l WHERE { { ?l rdf:type ontology:nutrient . ?p rdf:type ontology:chemical_substance . ?p property:physically_interacts_with ?l } UNION { ?p property:physically_interacts_with ?l . ?p rdf:type ontology:drug . ?l rdf:type ontology:nutrient } } GROUP BY ?l } . FILTER ( ?d >= 70 ) }
[]
nutrient chemical substance drug
SYSTEM
3
Q21108118 Q21115043 Q1949517
(c(Q79529)|c(Q8386),P129,c(Q181394))
action count
action atleast
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
value 70
[ANSWER]
[[{'concept': 'Q79529'}, {'concept': 'Q8386'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?l ) AS ?z ) WHERE { { SELECT DISTINCT ( COUNT ( ?p ) AS ?d ) ?l WHERE { { ?l rdf:type ontology:Q181394 . ?p rdf:type ontology:Q79529 . ?p property:P129 ?l } UNION { ?p property:P129 ?l . ?p rdf:type ontology:Q8386 . ?l rdf:type ontology:Q181394 } } GROUP BY ?l } . FILTER ( ?d >= 70 ) }
5-hydroxytryptamine receptor 2C 5-hydroxytryptamine receptor 1A 5-hydroxytryptamine receptor 2A
3
action count
action atleast
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
value 70
[[{'concept': 'chemical substance'}, {'concept': 'drug'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?l ) AS ?z ) WHERE { { SELECT DISTINCT ( COUNT ( ?p ) AS ?d ) ?l WHERE { { ?l rdf:type ontology:nutrient . ?p rdf:type ontology:chemical_substance . ?p property:physically_interacts_with ?l } UNION { ?p property:physically_interacts_with ?l . ?p rdf:type ontology:drug . ?l rdf:type ontology:nutrient } } GROUP BY ?l } . FILTER ( ?d >= 70 ) }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q23570387
Q863908
USER
And what about maltose transacetylase    glr1818?
(Q23570387,P702,c(Q863908))
action filter_type
action find
entity Q23570387
relation P702
type Q863908
['Q23570387', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?z WHERE { ?z rdf:type ontology:Q863908 . resource:Q23570387 property:P702 ?z }
maltose transacetylase    glr1818
action filter_type
action find
entity maltose transacetylase    glr1818
relation encoded by
type nucleic acid sequence
['maltose transacetylase    glr1818', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?z WHERE { ?z rdf:type ontology:nucleic_acid_sequence . resource:maltose_transacetylase____glr1818 property:encoded_by ?z }
[]
nucleic acid sequence
Q23267463
SYSTEM
maltose transacetylase    glr1818
Q23267463
(Q23570387,P702,c(Q863908))
action filter_type
action find
entity Q23570387
relation P702
type Q863908
[ANSWER]
['Q23570387', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?z WHERE { ?z rdf:type ontology:Q863908 . resource:Q23570387 property:P702 ?z }
maltose transacetylase    glr1818
maltose transacetylase    glr1818
action filter_type
action find
entity maltose transacetylase    glr1818
relation encoded by
type nucleic acid sequence
['maltose transacetylase    glr1818', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?z WHERE { ?z rdf:type ontology:nucleic_acid_sequence . resource:maltose_transacetylase____glr1818 property:encoded_by ?z }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23267463
P702
Q181394
USER
Which nutrient is encoded by that nucleic acid sequence ?
(c(Q181394),P702,Q23267463)
action filter_type
action find_reverse
entity Q23267463
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q23267463']
SELECT DISTINCT ?g WHERE { ?g property:P702 resource:Q23267463 . ?g rdf:type ontology:Q181394 }
maltose transacetylase    glr1818
action filter_type
action find_reverse
entity maltose transacetylase    glr1818
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'maltose transacetylase    glr1818']
SELECT DISTINCT ?g WHERE { ?g property:encoded_by resource:maltose_transacetylase____glr1818 . ?g rdf:type ontology:nutrient }
[]
nutrient
Q23570387
SYSTEM
maltose transacetylase    glr1818
Q23570387
(c(Q181394),P702,Q23267463)
action filter_type
action find_reverse
entity Q23267463
relation P702
type Q181394
Maltose transacetylase glr1818 is encoded by that nucleic acid sequence
[{'concept': 'Q181394'}, 'P702', 'Q23267463']
SELECT DISTINCT ?g WHERE { ?g property:P702 resource:Q23267463 . ?g rdf:type ontology:Q181394 }
maltose transacetylase    glr1818
Maltose transacetylase glr1818 is encoded by that nucleic acid sequence
maltose transacetylase    glr1818
action filter_type
action find_reverse
entity maltose transacetylase    glr1818
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'maltose transacetylase    glr1818']
SELECT DISTINCT ?g WHERE { ?g property:encoded_by resource:maltose_transacetylase____glr1818 . ?g rdf:type ontology:nutrient }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Single entity type
P682
Q2996394 Q181394
USER
How many biological processes are a biological processes that around 1377 nutrients are involved in ?
(c(Q181394),P682,c(Q2996394))
action count
action approx
action find_reverse_tuple_counts
relation P682
type Q2996394
type Q181394
value 1377
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ( COUNT ( ?m ) AS ?t ) WHERE { { SELECT DISTINCT ?m ( COUNT ( ?i ) AS ?s ) WHERE { ?m rdf:type ontology:Q2996394 . ?i rdf:type ontology:Q181394 . ?i property:P682 ?m } GROUP BY ?m } . FILTER ( ?s = 1377 ) }
action count
action approx
action find_reverse_tuple_counts
relation biological process
type biological process
type nutrient
value 1377
[{'concept': 'nutrient'}, 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ( COUNT ( ?m ) AS ?t ) WHERE { { SELECT DISTINCT ?m ( COUNT ( ?i ) AS ?s ) WHERE { ?m rdf:type ontology:biological_process . ?i rdf:type ontology:nutrient . ?i property:biological_process ?m } GROUP BY ?m } . FILTER ( ?s = 1377 ) }
[]
biological process nutrient
SYSTEM
2
Q847556 Q187640
(c(Q181394),P682,c(Q2996394))
action count
action approx
action find_reverse_tuple_counts
relation P682
type Q2996394
type Q181394
value 1377
[ANSWER]
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ( COUNT ( ?m ) AS ?t ) WHERE { { SELECT DISTINCT ?m ( COUNT ( ?i ) AS ?s ) WHERE { ?m rdf:type ontology:Q2996394 . ?i rdf:type ontology:Q181394 . ?i property:P682 ?m } GROUP BY ?m } . FILTER ( ?s = 1377 ) }
protein folding cell adhesion
2
action count
action approx
action find_reverse_tuple_counts
relation biological process
type biological process
type nutrient
value 1377
[{'concept': 'nutrient'}, 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ( COUNT ( ?m ) AS ?t ) WHERE { { SELECT DISTINCT ?m ( COUNT ( ?i ) AS ?s ) WHERE { ?m rdf:type ontology:biological_process . ?i rdf:type ontology:nutrient . ?i property:biological_process ?m } GROUP BY ?m } . FILTER ( ?s = 1377 ) }
[]
Quantitative Reasoning (Count) (All)
Incomplete count-based ques
Q23026622
Q181394
USER
And what about hypothetical protein    LA_0570?
(Q23026622,P688,c(Q181394))
action count
action filter_type
action find
entity Q23026622
relation P688
type Q181394
['Q23026622', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?w ) AS ?r ) WHERE { ?w rdf:type ontology:Q181394 . resource:Q23026622 property:P688 ?w }
hypothetical protein    LA_0570
action count
action filter_type
action find
entity hypothetical protein    LA_0570
relation encodes
type nutrient
['hypothetical protein    LA_0570', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?w ) AS ?r ) WHERE { ?w rdf:type ontology:nutrient . resource:hypothetical_protein____LA_0570 property:encodes ?w }
[]
nutrient
SYSTEM
1
(Q23026622,P688,c(Q181394))
action count
action filter_type
action find
entity Q23026622
relation P688
type Q181394
[ANSWER]
['Q23026622', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?w ) AS ?r ) WHERE { ?w rdf:type ontology:Q181394 . resource:Q23026622 property:P688 ?w }
1
action count
action filter_type
action find
entity hypothetical protein    LA_0570
relation encodes
type nutrient
['hypothetical protein    LA_0570', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?w ) AS ?r ) WHERE { ?w rdf:type ontology:nutrient . resource:hypothetical_protein____LA_0570 property:encodes ?w }
[]