Simple Question (Direct)
Simple Question
Q22990421
P702
Q863908
USER
Which nucleic acid sequence encodes succinyl-CoA ligase subunit alpha    PA1589 ?
(Q22990421,P702,c(Q863908))
action filter_type
action find
entity Q22990421
relation P702
type Q863908
['Q22990421', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?m WHERE { resource:Q22990421 property:P702 ?m . ?m rdf:type ontology:Q863908 }
succinyl-CoA ligase subunit alpha    PA1589
action filter_type
action find
entity succinyl-CoA ligase subunit alpha    PA1589
relation encoded by
type nucleic acid sequence
['succinyl-CoA ligase subunit alpha    PA1589', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?m WHERE { resource:succinyl-CoA_ligase_subunit_alpha____PA1589 property:encoded_by ?m . ?m rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q22982978
SYSTEM
succinyl-CoA ligase subunit alpha    PA1589
Q22982978
(Q22990421,P702,c(Q863908))
action filter_type
action find
entity Q22990421
relation P702
type Q863908
Succinyl-CoA ligase subunit alpha PA1589 encodes succinyl-CoA ligase subunit alpha PA1589
['Q22990421', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?m WHERE { resource:Q22990421 property:P702 ?m . ?m rdf:type ontology:Q863908 }
succinyl-CoA ligase subunit alpha    PA1589
Succinyl-CoA ligase subunit alpha PA1589 encodes succinyl-CoA ligase subunit alpha PA1589
succinyl-CoA ligase subunit alpha    PA1589
action filter_type
action find
entity succinyl-CoA ligase subunit alpha    PA1589
relation encoded by
type nucleic acid sequence
['succinyl-CoA ligase subunit alpha    PA1589', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?m WHERE { resource:succinyl-CoA_ligase_subunit_alpha____PA1589 property:encoded_by ?m . ?m rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q22982978
P703
Q16521
USER
Where is that nucleic acid sequence found ?
(Q22982978,P703,c(Q16521))
action filter_type
action find
entity Q22982978
relation P703
type Q16521
['Q22982978', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?c WHERE { resource:Q22982978 property:P703 ?c . ?c rdf:type ontology:Q16521 }
succinyl-CoA ligase subunit alpha    PA1589
action filter_type
action find
entity succinyl-CoA ligase subunit alpha    PA1589
relation found in taxon
type taxon
['succinyl-CoA ligase subunit alpha    PA1589', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?c WHERE { resource:succinyl-CoA_ligase_subunit_alpha____PA1589 property:found_in_taxon ?c . ?c rdf:type ontology:taxon }
[]
taxon
Q21065234
SYSTEM
Pseudomonas aeruginosa PAO1
Q21065234
(Q22982978,P703,c(Q16521))
action filter_type
action find
entity Q22982978
relation P703
type Q16521
That nucleic acid sequence is found in [ANSWER]
['Q22982978', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?c WHERE { resource:Q22982978 property:P703 ?c . ?c rdf:type ontology:Q16521 }
Pseudomonas aeruginosa PAO1
That nucleic acid sequence is found in Pseudomonas aeruginosa PAO1
Pseudomonas aeruginosa PAO1
action filter_type
action find
entity succinyl-CoA ligase subunit alpha    PA1589
relation found in taxon
type taxon
['succinyl-CoA ligase subunit alpha    PA1589', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?c WHERE { resource:succinyl-CoA_ligase_subunit_alpha____PA1589 property:found_in_taxon ?c . ?c rdf:type ontology:taxon }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q21065234 Q23460651
P703
Q181394
USER
Does serine/threonine kinase    FN1400 specy belongs to the taxon that one ?
(Q23460651,P703,Q21065234)
action is_in
entity Q23460651
action find
entity Q21065234
relation P703
['Q23460651', 'P703', 'Q21065234']
ASK WHERE { resource:Q21065234 property:P703 resource:Q23460651 }
Pseudomonas aeruginosa PAO1 serine/threonine kinase    FN1400
action is_in
entity serine/threonine kinase    FN1400
action find
entity Pseudomonas aeruginosa PAO1
relation found in taxon
['serine/threonine kinase    FN1400', 'found in taxon', 'Pseudomonas aeruginosa PAO1']
ASK WHERE { resource:Pseudomonas_aeruginosa_PAO1 property:found_in_taxon resource:serine/threonine_kinase____FN1400 }
[]
nutrient
SYSTEM
NO
(Q23460651,P703,Q21065234)
action is_in
entity Q23460651
action find
entity Q21065234
relation P703
[ANSWER]
['Q23460651', 'P703', 'Q21065234']
ASK WHERE { resource:Q21065234 property:P703 resource:Q23460651 }
No
action is_in
entity serine/threonine kinase    FN1400
action find
entity Pseudomonas aeruginosa PAO1
relation found in taxon
['serine/threonine kinase    FN1400', 'found in taxon', 'Pseudomonas aeruginosa PAO1']
ASK WHERE { resource:Pseudomonas_aeruginosa_PAO1 property:found_in_taxon resource:serine/threonine_kinase____FN1400 }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q22293730 Q23460651
P688
Q863908
USER
Which nucleic acid sequences encode serine/threonine kinase    FN1400 or hypothetical protein    TDE1510 ?
OR((c(Q863908),P688,Q23460651), (c(Q863908),P688,Q22293730))
action filter_type
action union
action find_reverse
entity Q23460651
relation P688
action find_reverse
entity Q22293730
relation P688
type Q863908
{'OR': [[{'concept': 'Q863908'}, 'P688', 'Q23460651'], [{'concept': 'Q863908'}, 'P688', 'Q22293730']]}
SELECT DISTINCT ?h WHERE { { { ?h property:P688 resource:Q23460651 } UNION { ?h property:P688 resource:Q22293730 } } . ?h rdf:type ontology:Q863908 }
hypothetical protein    TDE1510 serine/threonine kinase    FN1400
action filter_type
action union
action find_reverse
entity serine/threonine kinase    FN1400
relation encodes
action find_reverse
entity hypothetical protein    TDE1510
relation encodes
type nucleic acid sequence
{'OR': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'serine/threonine kinase    FN1400'], [{'concept': 'nucleic acid sequence'}, 'encodes', 'hypothetical protein    TDE1510']]}
SELECT DISTINCT ?h WHERE { { { ?h property:encodes resource:serine/threonine_kinase____FN1400 } UNION { ?h property:encodes resource:hypothetical_protein____TDE1510 } } . ?h rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q22289677 Q23117616
SYSTEM
hypothetical protein    TDE1510, serine/threonine kinase    FN1400
Q22289677 Q23117616
OR((c(Q863908),P688,Q23460651), (c(Q863908),P688,Q22293730))
action filter_type
action union
action find_reverse
entity Q23460651
relation P688
action find_reverse
entity Q22293730
relation P688
type Q863908
[ANSWERS]
{'OR': [[{'concept': 'Q863908'}, 'P688', 'Q23460651'], [{'concept': 'Q863908'}, 'P688', 'Q22293730']]}
SELECT DISTINCT ?h WHERE { { { ?h property:P688 resource:Q23460651 } UNION { ?h property:P688 resource:Q22293730 } } . ?h rdf:type ontology:Q863908 }
hypothetical protein    TDE1510 serine/threonine kinase    FN1400
Hypothetical protein TDE1510 and serine/threonine kinase FN1400 encode serine/threonine kinase FN1400 or hypothetical protein TDE1510
hypothetical protein    TDE1510 serine/threonine kinase    FN1400
action filter_type
action union
action find_reverse
entity serine/threonine kinase    FN1400
relation encodes
action find_reverse
entity hypothetical protein    TDE1510
relation encodes
type nucleic acid sequence
{'OR': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'serine/threonine kinase    FN1400'], [{'concept': 'nucleic acid sequence'}, 'encodes', 'hypothetical protein    TDE1510']]}
SELECT DISTINCT ?h WHERE { { { ?h property:encodes resource:serine/threonine_kinase____FN1400 } UNION { ?h property:encodes resource:hypothetical_protein____TDE1510 } } . ?h rdf:type ontology:nucleic_acid_sequence }
[]
Logical Reasoning (All)
Logical|Intersection|Multiple_Relation
Q14817981 Q22982978
P702 P680
Q181394
USER
Which nutrients do succinyl-CoA ligase subunit alpha    PA1589 encode and have ATP binding as their molecular function ?
AND((c(Q181394),P702,Q22982978), (c(Q181394),P680,Q14817981))
action filter_type
action intersection
action find_reverse
entity Q22982978
relation P702
action find_reverse
entity Q14817981
relation P680
type Q181394
{'AND': [[{'concept': 'Q181394'}, 'P702', 'Q22982978'], [{'concept': 'Q181394'}, 'P680', 'Q14817981']]}
SELECT DISTINCT ?t WHERE { ?t property:P702 resource:Q22982978 . ?t property:P680 resource:Q14817981 . ?t rdf:type ontology:Q181394 }
ATP binding succinyl-CoA ligase subunit alpha    PA1589
action filter_type
action intersection
action find_reverse
entity succinyl-CoA ligase subunit alpha    PA1589
relation encoded by
action find_reverse
entity ATP binding
relation molecular function
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'encoded by', 'succinyl-CoA ligase subunit alpha    PA1589'], [{'concept': 'nutrient'}, 'molecular function', 'ATP binding']]}
SELECT DISTINCT ?t WHERE { ?t property:encoded_by resource:succinyl-CoA_ligase_subunit_alpha____PA1589 . ?t property:molecular_function resource:ATP_binding . ?t rdf:type ontology:nutrient }
[]
nutrient
Q22990421
SYSTEM
succinyl-CoA ligase subunit alpha    PA1589
Q22990421
AND((c(Q181394),P702,Q22982978), (c(Q181394),P680,Q14817981))
action filter_type
action intersection
action find_reverse
entity Q22982978
relation P702
action find_reverse
entity Q14817981
relation P680
type Q181394
Succinyl-CoA ligase subunit alpha PA1589 succinyl-CoA ligase subunit alpha PA1589 encode and have ATP binding as their molecular function
{'AND': [[{'concept': 'Q181394'}, 'P702', 'Q22982978'], [{'concept': 'Q181394'}, 'P680', 'Q14817981']]}
SELECT DISTINCT ?t WHERE { ?t property:P702 resource:Q22982978 . ?t property:P680 resource:Q14817981 . ?t rdf:type ontology:Q181394 }
succinyl-CoA ligase subunit alpha    PA1589
Succinyl-CoA ligase subunit alpha PA1589 succinyl-CoA ligase subunit alpha PA1589 encode and have ATP binding as their molecular function
succinyl-CoA ligase subunit alpha    PA1589
action filter_type
action intersection
action find_reverse
entity succinyl-CoA ligase subunit alpha    PA1589
relation encoded by
action find_reverse
entity ATP binding
relation molecular function
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'encoded by', 'succinyl-CoA ligase subunit alpha    PA1589'], [{'concept': 'nutrient'}, 'molecular function', 'ATP binding']]}
SELECT DISTINCT ?t WHERE { ?t property:encoded_by resource:succinyl-CoA_ligase_subunit_alpha____PA1589 . ?t property:molecular_function resource:ATP_binding . ?t rdf:type ontology:nutrient }
[]
Logical Reasoning (All)
Logical|Intersection|Multiple_Relation
Q14327652 Q22289677
P702 P681
Q181394
USER
Which nutrients do hypothetical protein    TDE1510 encode and are integral component of membrane a cell component of ?
AND((c(Q181394),P702,Q22289677), (c(Q181394),P681,Q14327652))
action filter_type
action intersection
action find_reverse
entity Q22289677
relation P702
action find_reverse
entity Q14327652
relation P681
type Q181394
{'AND': [[{'concept': 'Q181394'}, 'P702', 'Q22289677'], [{'concept': 'Q181394'}, 'P681', 'Q14327652']]}
SELECT DISTINCT ?v WHERE { ?v rdf:type ontology:Q181394 . ?v property:P702 resource:Q22289677 . ?v property:P681 resource:Q14327652 }
integral component of membrane hypothetical protein    TDE1510
action filter_type
action intersection
action find_reverse
entity hypothetical protein    TDE1510
relation encoded by
action find_reverse
entity integral component of membrane
relation cell component
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'encoded by', 'hypothetical protein    TDE1510'], [{'concept': 'nutrient'}, 'cell component', 'integral component of membrane']]}
SELECT DISTINCT ?v WHERE { ?v rdf:type ontology:nutrient . ?v property:encoded_by resource:hypothetical_protein____TDE1510 . ?v property:cell_component resource:integral_component_of_membrane }
[]
nutrient
Q22293730
SYSTEM
hypothetical protein    TDE1510
Q22293730
AND((c(Q181394),P702,Q22289677), (c(Q181394),P681,Q14327652))
action filter_type
action intersection
action find_reverse
entity Q22289677
relation P702
action find_reverse
entity Q14327652
relation P681
type Q181394
Hypothetical protein TDE1510 and are integral component of membrane a cell component of hypothetical protein TDE1510 encode
{'AND': [[{'concept': 'Q181394'}, 'P702', 'Q22289677'], [{'concept': 'Q181394'}, 'P681', 'Q14327652']]}
SELECT DISTINCT ?v WHERE { ?v rdf:type ontology:Q181394 . ?v property:P702 resource:Q22289677 . ?v property:P681 resource:Q14327652 }
hypothetical protein    TDE1510
Hypothetical protein TDE1510 and are integral component of membrane a cell component of hypothetical protein TDE1510 encode
hypothetical protein    TDE1510
action filter_type
action intersection
action find_reverse
entity hypothetical protein    TDE1510
relation encoded by
action find_reverse
entity integral component of membrane
relation cell component
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'encoded by', 'hypothetical protein    TDE1510'], [{'concept': 'nutrient'}, 'cell component', 'integral component of membrane']]}
SELECT DISTINCT ?v WHERE { ?v rdf:type ontology:nutrient . ?v property:encoded_by resource:hypothetical_protein____TDE1510 . ?v property:cell_component resource:integral_component_of_membrane }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q22310760 Q22982978
P688
Q181394
USER
Which nutrients are encoded by succinyl-CoA ligase subunit alpha    PA1589 or type I pili subunit CsuA/B    PP_2360 ?
OR((Q22982978,P688,c(Q181394)), (Q22310760,P688,c(Q181394)))
action filter_type
action union
action find
entity Q22982978
relation P688
action find
entity Q22310760
relation P688
type Q181394
{'OR': [['Q22982978', 'P688', {'concept': 'Q181394'}], ['Q22310760', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?w WHERE { { { resource:Q22982978 property:P688 ?w } UNION { resource:Q22310760 property:P688 ?w } } . ?w rdf:type ontology:Q181394 }
type I pili subunit CsuA/B    PP_2360 succinyl-CoA ligase subunit alpha    PA1589
action filter_type
action union
action find
entity succinyl-CoA ligase subunit alpha    PA1589
relation encodes
action find
entity type I pili subunit CsuA/B    PP_2360
relation encodes
type nutrient
{'OR': [['succinyl-CoA ligase subunit alpha    PA1589', 'encodes', {'concept': 'nutrient'}], ['type I pili subunit CsuA/B    PP_2360', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?w WHERE { { { resource:succinyl-CoA_ligase_subunit_alpha____PA1589 property:encodes ?w } UNION { resource:type_I_pili_subunit_CsuA/B____PP_2360 property:encodes ?w } } . ?w rdf:type ontology:nutrient }
[]
nutrient
Q22990421 Q22317479
SYSTEM
succinyl-CoA ligase subunit alpha    PA1589, type I pili subunit CsuA/B    PP_2360
Q22990421 Q22317479
OR((Q22982978,P688,c(Q181394)), (Q22310760,P688,c(Q181394)))
action filter_type
action union
action find
entity Q22982978
relation P688
action find
entity Q22310760
relation P688
type Q181394
[ANSWERS]
{'OR': [['Q22982978', 'P688', {'concept': 'Q181394'}], ['Q22310760', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?w WHERE { { { resource:Q22982978 property:P688 ?w } UNION { resource:Q22310760 property:P688 ?w } } . ?w rdf:type ontology:Q181394 }
succinyl-CoA ligase subunit alpha    PA1589 type I pili subunit CsuA/B    PP_2360
Succinyl-CoA ligase subunit alpha PA1589 and type I pili subunit CsuA/B PP 2360 are encoded by succinyl-CoA ligase subunit alpha PA1589 or type I pili subunit CsuA/B PP_2360
succinyl-CoA ligase subunit alpha    PA1589 type I pili subunit CsuA/B    PP_2360
action filter_type
action union
action find
entity succinyl-CoA ligase subunit alpha    PA1589
relation encodes
action find
entity type I pili subunit CsuA/B    PP_2360
relation encodes
type nutrient
{'OR': [['succinyl-CoA ligase subunit alpha    PA1589', 'encodes', {'concept': 'nutrient'}], ['type I pili subunit CsuA/B    PP_2360', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?w WHERE { { { resource:succinyl-CoA_ligase_subunit_alpha____PA1589 property:encodes ?w } UNION { resource:type_I_pili_subunit_CsuA/B____PP_2360 property:encodes ?w } } . ?w rdf:type ontology:nutrient }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Logical operators
Q22990421
P682
Q1057 Q3249551
USER
How many metabolic processes and processes are a biological processes that succinyl-CoA ligase subunit alpha    PA1589 are involved in ?
(Q22990421,P682,c(Q1057)) (Q22990421,P682,c(Q3249551))
action count
action union
action filter_type
action find
entity Q22990421
relation P682
type Q1057
action filter_type
action find
entity Q22990421
relation P682
type Q3249551
['Q22990421', 'P682', {'concept': 'Q1057'}] ['Q22990421', 'P682', {'concept': 'Q3249551'}]
SELECT DISTINCT ( COUNT ( ?f ) AS ?y ) WHERE { VALUES ( ?u ) { ( ontology:Q3249551 ) ( ontology:Q1057 ) } . ?f rdf:type ?u }
succinyl-CoA ligase subunit alpha    PA1589
action count
action union
action filter_type
action find
entity succinyl-CoA ligase subunit alpha    PA1589
relation biological process
type metabolic process
action filter_type
action find
entity succinyl-CoA ligase subunit alpha    PA1589
relation biological process
type process
['succinyl-CoA ligase subunit alpha    PA1589', 'biological process', {'concept': 'metabolic process'}] ['succinyl-CoA ligase subunit alpha    PA1589', 'biological process', {'concept': 'process'}]
SELECT DISTINCT ( COUNT ( ?f ) AS ?y ) WHERE { VALUES ( ?u ) { ( ontology:process ) ( ontology:metabolic_process ) } . ?f rdf:type ?u }
[]
metabolic process process
SYSTEM
1 metabolic processes and 1 processes
Q133895 Q1057
(Q22990421,P682,c(Q1057)) (Q22990421,P682,c(Q3249551))
action count
action union
action filter_type
action find
entity Q22990421
relation P682
type Q1057
action filter_type
action find
entity Q22990421
relation P682
type Q3249551
[ANSWER]
['Q22990421', 'P682', {'concept': 'Q1057'}] ['Q22990421', 'P682', {'concept': 'Q3249551'}]
SELECT DISTINCT ( COUNT ( ?f ) AS ?y ) WHERE { VALUES ( ?u ) { ( ontology:Q3249551 ) ( ontology:Q1057 ) } . ?f rdf:type ?u }
tricarboxylic acid cycle metabolic process
1 metabolic processes and 1 processes
action count
action union
action filter_type
action find
entity succinyl-CoA ligase subunit alpha    PA1589
relation biological process
type metabolic process
action filter_type
action find
entity succinyl-CoA ligase subunit alpha    PA1589
relation biological process
type process
['succinyl-CoA ligase subunit alpha    PA1589', 'biological process', {'concept': 'metabolic process'}] ['succinyl-CoA ligase subunit alpha    PA1589', 'biological process', {'concept': 'process'}]
SELECT DISTINCT ( COUNT ( ?f ) AS ?y ) WHERE { VALUES ( ?u ) { ( ontology:process ) ( ontology:metabolic_process ) } . ?f rdf:type ?u }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q22990421
P682
Q1057
USER
Which metabolic process is that nutrient involved in ?
action filter_type
action find
entity Q22990421
relation P682
type Q1057
SELECT DISTINCT ?q WHERE { resource:Q22990421 property:P682 ?q . ?q rdf:type ontology:Q1057 }
succinyl-CoA ligase subunit alpha    PA1589
action filter_type
action find
entity succinyl-CoA ligase subunit alpha    PA1589
relation biological process
type metabolic process
SELECT DISTINCT ?q WHERE { resource:succinyl-CoA_ligase_subunit_alpha____PA1589 property:biological_process ?q . ?q rdf:type ontology:metabolic_process }
[]
metabolic process
Q133895
SYSTEM
tricarboxylic acid cycle
Q133895
action filter_type
action find
entity Q22990421
relation P682
type Q1057
That nutrient is the [ANSWER]
SELECT DISTINCT ?q WHERE { resource:Q22990421 property:P682 ?q . ?q rdf:type ontology:Q1057 }
tricarboxylic acid cycle
That nutrient is the tricarboxylic acid cycle
tricarboxylic acid cycle
action filter_type
action find
entity succinyl-CoA ligase subunit alpha    PA1589
relation biological process
type metabolic process
SELECT DISTINCT ?q WHERE { resource:succinyl-CoA_ligase_subunit_alpha____PA1589 property:biological_process ?q . ?q rdf:type ontology:metabolic_process }
[]