Simple Question (Direct)
Simple Question
Q24097062
P703
Q631147
USER
Which taxon does ketoglutarate semialdehyde dehydrogenase    XCC2410 belong to ?
(Q24097062,P703,c(Q631147))
action filter_type
action find
entity Q24097062
relation P703
type Q631147
['Q24097062', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?r WHERE { resource:Q24097062 property:P703 ?r . ?r rdf:type ontology:Q631147 }
ketoglutarate semialdehyde dehydrogenase    XCC2410
action filter_type
action find
entity ketoglutarate semialdehyde dehydrogenase    XCC2410
relation found in taxon
type infraspecific name
['ketoglutarate semialdehyde dehydrogenase    XCC2410', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?r WHERE { resource:ketoglutarate_semialdehyde_dehydrogenase____XCC2410 property:found_in_taxon ?r . ?r rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21079491
SYSTEM
Xanthomonas campestris pv. campestris str. ATCC 33913
Q21079491
(Q24097062,P703,c(Q631147))
action filter_type
action find
entity Q24097062
relation P703
type Q631147
Ketoglutarate semialdehyde dehydrogenase XCC 2410 belongs to [ANSWER]
['Q24097062', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?r WHERE { resource:Q24097062 property:P703 ?r . ?r rdf:type ontology:Q631147 }
Xanthomonas campestris pv. campestris str. ATCC 33913
Ketoglutarate semialdehyde dehydrogenase XCC 2410 belongs to Xanthomonas campestris pv. campestris str. ATCC 33913
Xanthomonas campestris pv. campestris str. ATCC 33913
action filter_type
action find
entity ketoglutarate semialdehyde dehydrogenase    XCC2410
relation found in taxon
type infraspecific name
['ketoglutarate semialdehyde dehydrogenase    XCC2410', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?r WHERE { resource:ketoglutarate_semialdehyde_dehydrogenase____XCC2410 property:found_in_taxon ?r . ?r rdf:type ontology:infraspecific_name }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q24097062
P682
Q1057
USER
Which metabolic process is that nutrient involved in ?
(Q21079491,P682,c(Q1057))
action filter_type
action find
entity Q24097062
relation P682
type Q1057
['Q21079491', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:Q1057 . resource:Q24097062 property:P682 ?m }
ketoglutarate semialdehyde dehydrogenase    XCC2410
action filter_type
action find
entity ketoglutarate semialdehyde dehydrogenase    XCC2410
relation biological process
type metabolic process
['Xanthomonas campestris pv. campestris str. ATCC 33913', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:metabolic_process . resource:ketoglutarate_semialdehyde_dehydrogenase____XCC2410 property:biological_process ?m }
[]
metabolic process
Q14349764
SYSTEM
oxidation-reduction process
Q14349764
(Q21079491,P682,c(Q1057))
action filter_type
action find
entity Q24097062
relation P682
type Q1057
That nutrient is an [ANSWER]
['Q21079491', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:Q1057 . resource:Q24097062 property:P682 ?m }
oxidation-reduction process
That nutrient is an oxidation-reduction process
oxidation-reduction process
action filter_type
action find
entity ketoglutarate semialdehyde dehydrogenase    XCC2410
relation biological process
type metabolic process
['Xanthomonas campestris pv. campestris str. ATCC 33913', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:metabolic_process . resource:ketoglutarate_semialdehyde_dehydrogenase____XCC2410 property:biological_process ?m }
[]
Logical Reasoning (All)
Logical|Intersection|Single_Relation|Incomplete
Q23571297 Q24097062
P682
Q1057
USER
And also L-lactate dehydrogenase A chain    gll3324
AND((Q24097062,P682,c(Q1057)), (Q23571297,P682,c(Q1057)))
action filter_type
action intersection
action find
entity Q24097062
relation P682
action find
entity Q23571297
relation P682
type Q1057
{'AND': [['Q24097062', 'P682', {'concept': 'Q1057'}], ['Q23571297', 'P682', {'concept': 'Q1057'}]]}
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:Q1057 . resource:Q23571297 property:P682 ?x . resource:Q24097062 property:P682 ?x }
L-lactate dehydrogenase A chain    gll3324 ketoglutarate semialdehyde dehydrogenase    XCC2410
action filter_type
action intersection
action find
entity ketoglutarate semialdehyde dehydrogenase    XCC2410
relation biological process
action find
entity L-lactate dehydrogenase A chain    gll3324
relation biological process
type metabolic process
{'AND': [['ketoglutarate semialdehyde dehydrogenase    XCC2410', 'biological process', {'concept': 'metabolic process'}], ['L-lactate dehydrogenase A chain    gll3324', 'biological process', {'concept': 'metabolic process'}]]}
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:metabolic_process . resource:L-lactate_dehydrogenase_A_chain____gll3324 property:biological_process ?x . resource:ketoglutarate_semialdehyde_dehydrogenase____XCC2410 property:biological_process ?x }
[]
metabolic process
Q14349764
SYSTEM
oxidation-reduction process
Q14349764
AND((Q24097062,P682,c(Q1057)), (Q23571297,P682,c(Q1057)))
action filter_type
action intersection
action find
entity Q24097062
relation P682
action find
entity Q23571297
relation P682
type Q1057
[ANSWER]
{'AND': [['Q24097062', 'P682', {'concept': 'Q1057'}], ['Q23571297', 'P682', {'concept': 'Q1057'}]]}
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:Q1057 . resource:Q23571297 property:P682 ?x . resource:Q24097062 property:P682 ?x }
oxidation-reduction process
oxidation-reduction process
action filter_type
action intersection
action find
entity ketoglutarate semialdehyde dehydrogenase    XCC2410
relation biological process
action find
entity L-lactate dehydrogenase A chain    gll3324
relation biological process
type metabolic process
{'AND': [['ketoglutarate semialdehyde dehydrogenase    XCC2410', 'biological process', {'concept': 'metabolic process'}], ['L-lactate dehydrogenase A chain    gll3324', 'biological process', {'concept': 'metabolic process'}]]}
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:metabolic_process . resource:L-lactate_dehydrogenase_A_chain____gll3324 property:biological_process ?x . resource:ketoglutarate_semialdehyde_dehydrogenase____XCC2410 property:biological_process ?x }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q14908180 Q24097062
P702
Q863908
USER
Which nucleic acid sequences encodes ketoglutarate semialdehyde dehydrogenase    XCC2410 or Death domain-associated protein 6 ?
OR((Q24097062,P702,c(Q863908)), (Q14908180,P702,c(Q863908)))
action filter_type
action union
action find
entity Q24097062
relation P702
action find
entity Q14908180
relation P702
type Q863908
{'OR': [['Q24097062', 'P702', {'concept': 'Q863908'}], ['Q14908180', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?c WHERE { { { resource:Q24097062 property:P702 ?c } UNION { resource:Q14908180 property:P702 ?c } } . ?c rdf:type ontology:Q863908 }
Death domain-associated protein 6 ketoglutarate semialdehyde dehydrogenase    XCC2410
action filter_type
action union
action find
entity ketoglutarate semialdehyde dehydrogenase    XCC2410
relation encoded by
action find
entity Death domain-associated protein 6
relation encoded by
type nucleic acid sequence
{'OR': [['ketoglutarate semialdehyde dehydrogenase    XCC2410', 'encoded by', {'concept': 'nucleic acid sequence'}], ['Death domain-associated protein 6', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?c WHERE { { { resource:ketoglutarate_semialdehyde_dehydrogenase____XCC2410 property:encoded_by ?c } UNION { resource:Death_domain-associated_protein_6 property:encoded_by ?c } } . ?c rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q14908179 Q23155633
SYSTEM
Daxx, ketoglutarate semialdehyde dehydrogenase    XCC2410
Q14908179 Q23155633
OR((Q24097062,P702,c(Q863908)), (Q14908180,P702,c(Q863908)))
action filter_type
action union
action find
entity Q24097062
relation P702
action find
entity Q14908180
relation P702
type Q863908
[ANSWERS]
{'OR': [['Q24097062', 'P702', {'concept': 'Q863908'}], ['Q14908180', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?c WHERE { { { resource:Q24097062 property:P702 ?c } UNION { resource:Q14908180 property:P702 ?c } } . ?c rdf:type ontology:Q863908 }
Daxx ketoglutarate semialdehyde dehydrogenase    XCC2410
Daxx and ketoglutarate semialdehyde dehydrogenase XCC2410 encode ketoglutarate semialdehyde dehydrogenase XCC2410 or Death domain-associated protein 6
Daxx ketoglutarate semialdehyde dehydrogenase    XCC2410
action filter_type
action union
action find
entity ketoglutarate semialdehyde dehydrogenase    XCC2410
relation encoded by
action find
entity Death domain-associated protein 6
relation encoded by
type nucleic acid sequence
{'OR': [['ketoglutarate semialdehyde dehydrogenase    XCC2410', 'encoded by', {'concept': 'nucleic acid sequence'}], ['Death domain-associated protein 6', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?c WHERE { { { resource:ketoglutarate_semialdehyde_dehydrogenase____XCC2410 property:encoded_by ?c } UNION { resource:Death_domain-associated_protein_6 property:encoded_by ?c } } . ?c rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q14908179
P684
Q863908
USER
Which nucleic acid sequence is an orthologous gene for Daxx ?
(Q14908179,P684,c(Q863908))
action filter_type
action find
entity Q14908179
relation P684
type Q863908
['Q14908179', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?t WHERE { resource:Q14908179 property:P684 ?t . ?t rdf:type ontology:Q863908 }
Daxx
action filter_type
action find
entity Daxx
relation ortholog
type nucleic acid sequence
['Daxx', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?t WHERE { resource:Daxx property:ortholog ?t . ?t rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q14908178
SYSTEM
DAXX
Q14908178
(Q14908179,P684,c(Q863908))
action filter_type
action find
entity Q14908179
relation P684
type Q863908
[ANSWER] is an orthologous gene for Daxx
['Q14908179', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?t WHERE { resource:Q14908179 property:P684 ?t . ?t rdf:type ontology:Q863908 }
DAXX
DAXX is an orthologous gene for Daxx
DAXX
action filter_type
action find
entity Daxx
relation ortholog
type nucleic acid sequence
['Daxx', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?t WHERE { resource:Daxx property:ortholog ?t . ?t rdf:type ontology:nucleic_acid_sequence }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q21631931 Q14908180
P702
Q863908
USER
Which nucleic acid sequences encode Death domain-associated protein 6 or hypothetical protein    HP0120 ?
OR((Q14908180,P702,c(Q863908)), (Q21631931,P702,c(Q863908)))
action filter_type
action union
action find
entity Q14908180
relation P702
action find
entity Q21631931
relation P702
type Q863908
{'OR': [['Q14908180', 'P702', {'concept': 'Q863908'}], ['Q21631931', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?r WHERE { { ?m property:P702 ?r . VALUES ( ?m ) { ( resource:Q14908180 ) ( resource:Q21631931 ) } } . ?r rdf:type ontology:Q863908 }
hypothetical protein    HP0120 Death domain-associated protein 6
action filter_type
action union
action find
entity Death domain-associated protein 6
relation encoded by
action find
entity hypothetical protein    HP0120
relation encoded by
type nucleic acid sequence
{'OR': [['Death domain-associated protein 6', 'encoded by', {'concept': 'nucleic acid sequence'}], ['hypothetical protein    HP0120', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?r WHERE { { ?m property:encoded_by ?r . VALUES ( ?m ) { ( resource:Death_domain-associated_protein_6 ) ( resource:hypothetical_protein____HP0120 ) } } . ?r rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q14908179 Q21628504
SYSTEM
Daxx, hypothetical protein    HP0120
Q14908179 Q21628504
OR((Q14908180,P702,c(Q863908)), (Q21631931,P702,c(Q863908)))
action filter_type
action union
action find
entity Q14908180
relation P702
action find
entity Q21631931
relation P702
type Q863908
[ANSWERS]
{'OR': [['Q14908180', 'P702', {'concept': 'Q863908'}], ['Q21631931', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?r WHERE { { ?m property:P702 ?r . VALUES ( ?m ) { ( resource:Q14908180 ) ( resource:Q21631931 ) } } . ?r rdf:type ontology:Q863908 }
Daxx hypothetical protein    HP0120
Daxx and hypothetical protein HP0120 encode Death domain-associated protein 6 or hypothetical protein HP0120
Daxx hypothetical protein    HP0120
action filter_type
action union
action find
entity Death domain-associated protein 6
relation encoded by
action find
entity hypothetical protein    HP0120
relation encoded by
type nucleic acid sequence
{'OR': [['Death domain-associated protein 6', 'encoded by', {'concept': 'nucleic acid sequence'}], ['hypothetical protein    HP0120', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?r WHERE { { ?m property:encoded_by ?r . VALUES ( ?m ) { ( resource:Death_domain-associated_protein_6 ) ( resource:hypothetical_protein____HP0120 ) } } . ?r rdf:type ontology:nucleic_acid_sequence }
[]
Clarification
Simple Question|Single Entity|Indirect
Q21628504
P688
Q181394
USER
Which nutrient is that nucleic acid sequence an encoding of ?
(Q21628504,P688,c(Q181394))
action filter_type
action find
entity Q21628504
relation P688
type Q181394
['Q21628504', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?k WHERE { resource:Q21628504 property:P688 ?k . ?k rdf:type ontology:Q181394 }
hypothetical protein    HP0120
action filter_type
action find
entity hypothetical protein    HP0120
relation encodes
type nutrient
['hypothetical protein    HP0120', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?k WHERE { resource:hypothetical_protein____HP0120 property:encodes ?k . ?k rdf:type ontology:nutrient }
[]
nutrient
Clarification for simple ques.
Q14908179
SYSTEM
Did you mean Daxx ?
Q14908179 Q21628504
(Q14908179,P688,c(Q181394)) (Q21628504,P688,c(Q181394))
[ANSWER]
['Q14908179', 'P688', {'concept': 'Q181394'}] ['Q21628504', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?k WHERE { resource:Q21628504 property:P688 ?k . ?k rdf:type ontology:Q181394 }
Daxx hypothetical protein    HP0120
Did you mean Daxx ?
Daxx
['Daxx', 'encodes', {'concept': 'nutrient'}] ['hypothetical protein    HP0120', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?k WHERE { resource:hypothetical_protein____HP0120 property:encodes ?k . ?k rdf:type ontology:nutrient }
[]
Simple Question (Coreferenced)
USER
No, I meant hypothetical protein    HP0120. Could you tell me the answer for that?
(Q21628504,P688,c(Q181394))
Q21628504
['Q21628504', 'P688', {'concept': 'Q181394'}]
['hypothetical protein    HP0120', 'encodes', {'concept': 'nutrient'}]
[]
Q21631931
SYSTEM
hypothetical protein    HP0120
Q21631931
(Q21628504,P688,c(Q181394))
action filter_type
action find
entity Q21628504
relation P688
type Q181394
Hypothetical protein HP0120 is that nucleic acid sequence an encoding of
['Q21628504', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?k WHERE { resource:Q21628504 property:P688 ?k . ?k rdf:type ontology:Q181394 }
hypothetical protein    HP0120
Hypothetical protein HP0120 is that nucleic acid sequence an encoding of
hypothetical protein    HP0120
action filter_type
action find
entity hypothetical protein    HP0120
relation encodes
type nutrient
['hypothetical protein    HP0120', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?k WHERE { resource:hypothetical_protein____HP0120 property:encodes ?k . ?k rdf:type ontology:nutrient }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21631931
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(c(Q863908),P688,Q21631931)
action filter_type
action find_reverse
entity Q21631931
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q21631931']
SELECT DISTINCT ?g WHERE { ?g property:P688 resource:Q21631931 . ?g rdf:type ontology:Q863908 }
hypothetical protein    HP0120
action filter_type
action find_reverse
entity hypothetical protein    HP0120
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'hypothetical protein    HP0120']
SELECT DISTINCT ?g WHERE { ?g property:encodes resource:hypothetical_protein____HP0120 . ?g rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q21628504
SYSTEM
hypothetical protein    HP0120
Q21628504
(c(Q863908),P688,Q21631931)
action filter_type
action find_reverse
entity Q21631931
relation P688
type Q863908
Hypothetical protein HP0120 encodes that nutrient
[{'concept': 'Q863908'}, 'P688', 'Q21631931']
SELECT DISTINCT ?g WHERE { ?g property:P688 resource:Q21631931 . ?g rdf:type ontology:Q863908 }
hypothetical protein    HP0120
Hypothetical protein HP0120 encodes that nutrient
hypothetical protein    HP0120
action filter_type
action find_reverse
entity hypothetical protein    HP0120
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'hypothetical protein    HP0120']
SELECT DISTINCT ?g WHERE { ?g property:encodes resource:hypothetical_protein____HP0120 . ?g rdf:type ontology:nucleic_acid_sequence }
[]