Simple Question (Direct)
Simple Question
Q27747664
P680
Q44424
USER
What represents the molecular function of 3-isopropylmalate dehydrogenase    MSMEG_2379 ?
(Q27747664,P680,c(Q44424))
action filter_type
action find
entity Q27747664
relation P680
type Q44424
['Q27747664', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?w WHERE { ?w rdf:type ontology:Q44424 . resource:Q27747664 property:P680 ?w }
3-isopropylmalate dehydrogenase    MSMEG_2379
action filter_type
action find
entity 3-isopropylmalate dehydrogenase    MSMEG_2379
relation molecular function
type chemical bond
['3-isopropylmalate dehydrogenase    MSMEG_2379', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?w WHERE { ?w rdf:type ontology:chemical_bond . resource:3-isopropylmalate_dehydrogenase____MSMEG_2379 property:molecular_function ?w }
[]
chemical bond
Q14860850 Q13667380
SYSTEM
magnesium ion binding, metal ion binding
Q14860850 Q13667380
(Q27747664,P680,c(Q44424))
action filter_type
action find
entity Q27747664
relation P680
type Q44424
[ANSWERS] represent the molecular function of 3-isopropylmalate dehydrogenase MSMEG_2379
['Q27747664', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?w WHERE { ?w rdf:type ontology:Q44424 . resource:Q27747664 property:P680 ?w }
magnesium ion binding metal ion binding
Magnesium ion binding and metal ion binding represent the molecular function of 3-isopropylmalate dehydrogenase MSMEG_2379
magnesium ion binding metal ion binding
action filter_type
action find
entity 3-isopropylmalate dehydrogenase    MSMEG_2379
relation molecular function
type chemical bond
['3-isopropylmalate dehydrogenase    MSMEG_2379', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?w WHERE { ?w rdf:type ontology:chemical_bond . resource:3-isopropylmalate_dehydrogenase____MSMEG_2379 property:molecular_function ?w }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q27747664
P681
Q15989253
USER
Which part is a component of 3-isopropylmalate dehydrogenase    MSMEG_2379 ?
(Q27747664,P681,c(Q15989253))
action filter_type
action find
entity Q27747664
relation P681
type Q15989253
['Q27747664', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?h WHERE { ?h rdf:type ontology:Q15989253 . resource:Q27747664 property:P681 ?h }
3-isopropylmalate dehydrogenase    MSMEG_2379
action filter_type
action find
entity 3-isopropylmalate dehydrogenase    MSMEG_2379
relation cell component
type part
['3-isopropylmalate dehydrogenase    MSMEG_2379', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?h WHERE { ?h rdf:type ontology:part . resource:3-isopropylmalate_dehydrogenase____MSMEG_2379 property:cell_component ?h }
[]
part
Q79899
SYSTEM
cytoplasm
Q79899
(Q27747664,P681,c(Q15989253))
action filter_type
action find
entity Q27747664
relation P681
type Q15989253
[ANSWER] is a component of 3-isopropylmalate dehydrogenase MSMEG_2379
['Q27747664', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?h WHERE { ?h rdf:type ontology:Q15989253 . resource:Q27747664 property:P681 ?h }
cytoplasm
Cytoplasm is a component of 3-isopropylmalate dehydrogenase MSMEG_2379
cytoplasm
action filter_type
action find
entity 3-isopropylmalate dehydrogenase    MSMEG_2379
relation cell component
type part
['3-isopropylmalate dehydrogenase    MSMEG_2379', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?h WHERE { ?h rdf:type ontology:part . resource:3-isopropylmalate_dehydrogenase____MSMEG_2379 property:cell_component ?h }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q27747664
P702
Q863908
USER
What encodes 3-isopropylmalate dehydrogenase    MSMEG_2379 ?
(Q27747664,P702,c(Q863908))
action filter_type
action find
entity Q27747664
relation P702
type Q863908
['Q27747664', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?h WHERE { resource:Q27747664 property:P702 ?h . ?h rdf:type ontology:Q863908 }
3-isopropylmalate dehydrogenase    MSMEG_2379
action filter_type
action find
entity 3-isopropylmalate dehydrogenase    MSMEG_2379
relation encoded by
type nucleic acid sequence
['3-isopropylmalate dehydrogenase    MSMEG_2379', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?h WHERE { resource:3-isopropylmalate_dehydrogenase____MSMEG_2379 property:encoded_by ?h . ?h rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23277255
SYSTEM
3-isopropylmalate dehydrogenase    MSMEG_2379
Q23277255
(Q27747664,P702,c(Q863908))
action filter_type
action find
entity Q27747664
relation P702
type Q863908
3-isopropylmalate dehydrogenase MSMEG 2379 encodes 3-isopropylmalate dehydrogenase MSMEG_2379
['Q27747664', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?h WHERE { resource:Q27747664 property:P702 ?h . ?h rdf:type ontology:Q863908 }
3-isopropylmalate dehydrogenase    MSMEG_2379
3-isopropylmalate dehydrogenase MSMEG 2379 encodes 3-isopropylmalate dehydrogenase MSMEG_2379
3-isopropylmalate dehydrogenase    MSMEG_2379
action filter_type
action find
entity 3-isopropylmalate dehydrogenase    MSMEG_2379
relation encoded by
type nucleic acid sequence
['3-isopropylmalate dehydrogenase    MSMEG_2379', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?h WHERE { resource:3-isopropylmalate_dehydrogenase____MSMEG_2379 property:encoded_by ?h . ?h rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q27747664
P682
Q1057
USER
Which metabolic process is that nutrient involved in ?
(Q23277255,P682,c(Q1057))
action filter_type
action find
entity Q27747664
relation P682
type Q1057
['Q23277255', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?j WHERE { resource:Q27747664 property:P682 ?j . ?j rdf:type ontology:Q1057 }
3-isopropylmalate dehydrogenase    MSMEG_2379
action filter_type
action find
entity 3-isopropylmalate dehydrogenase    MSMEG_2379
relation biological process
type metabolic process
['3-isopropylmalate dehydrogenase    MSMEG_2379', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?j WHERE { resource:3-isopropylmalate_dehydrogenase____MSMEG_2379 property:biological_process ?j . ?j rdf:type ontology:metabolic_process }
[]
metabolic process
Q14349764
SYSTEM
oxidation-reduction process
Q14349764
(Q23277255,P682,c(Q1057))
action filter_type
action find
entity Q27747664
relation P682
type Q1057
That nutrient is an [ANSWER]
['Q23277255', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?j WHERE { resource:Q27747664 property:P682 ?j . ?j rdf:type ontology:Q1057 }
oxidation-reduction process
That nutrient is an oxidation-reduction process
oxidation-reduction process
action filter_type
action find
entity 3-isopropylmalate dehydrogenase    MSMEG_2379
relation biological process
type metabolic process
['3-isopropylmalate dehydrogenase    MSMEG_2379', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?j WHERE { resource:3-isopropylmalate_dehydrogenase____MSMEG_2379 property:biological_process ?j . ?j rdf:type ontology:metabolic_process }
[]
Logical Reasoning (All)
Logical|Intersection|Single_Relation
Q27743856 Q27747664
P703
Q631147
USER
Which infraspecific names are 3-isopropylmalate dehydrogenase    MSMEG_2379 and ectoine/hydroxyectoine ABC transporter permease EhuC    MSMEG_5369 a part of ?
AND((Q27747664,P703,c(Q631147)), (Q27743856,P703,c(Q631147)))
action filter_type
action intersection
action find
entity Q27747664
relation P703
action find
entity Q27743856
relation P703
type Q631147
{'AND': [['Q27747664', 'P703', {'concept': 'Q631147'}], ['Q27743856', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?w WHERE { resource:Q27747664 property:P703 ?w . resource:Q27743856 property:P703 ?w . ?w rdf:type ontology:Q631147 }
ectoine/hydroxyectoine ABC transporter permease EhuC    MSMEG_5369 3-isopropylmalate dehydrogenase    MSMEG_2379
action filter_type
action intersection
action find
entity 3-isopropylmalate dehydrogenase    MSMEG_2379
relation found in taxon
action find
entity ectoine/hydroxyectoine ABC transporter permease EhuC    MSMEG_5369
relation found in taxon
type infraspecific name
{'AND': [['3-isopropylmalate dehydrogenase    MSMEG_2379', 'found in taxon', {'concept': 'infraspecific name'}], ['ectoine/hydroxyectoine ABC transporter permease EhuC    MSMEG_5369', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?w WHERE { resource:3-isopropylmalate_dehydrogenase____MSMEG_2379 property:found_in_taxon ?w . resource:ectoine/hydroxyectoine_ABC_transporter_permease_EhuC____MSMEG_5369 property:found_in_taxon ?w . ?w rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102986
SYSTEM
Mycobacterium smegmatis str. MC2 155
Q21102986
AND((Q27747664,P703,c(Q631147)), (Q27743856,P703,c(Q631147)))
action filter_type
action intersection
action find
entity Q27747664
relation P703
action find
entity Q27743856
relation P703
type Q631147
[ANSWER] is 3-isopropylmalate dehydrogenase MSMEG_2379 and ectoine/hydroxyectoine ABC transporter permease EhuC MSMEG_5369 a part of
{'AND': [['Q27747664', 'P703', {'concept': 'Q631147'}], ['Q27743856', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?w WHERE { resource:Q27747664 property:P703 ?w . resource:Q27743856 property:P703 ?w . ?w rdf:type ontology:Q631147 }
Mycobacterium smegmatis str. MC2 155
Mycobacterium smegmatis str. MC2 155 is 3-isopropylmalate dehydrogenase MSMEG_2379 and ectoine/hydroxyectoine ABC transporter permease EhuC MSMEG_5369 a part of
Mycobacterium smegmatis str. MC2 155
action filter_type
action intersection
action find
entity 3-isopropylmalate dehydrogenase    MSMEG_2379
relation found in taxon
action find
entity ectoine/hydroxyectoine ABC transporter permease EhuC    MSMEG_5369
relation found in taxon
type infraspecific name
{'AND': [['3-isopropylmalate dehydrogenase    MSMEG_2379', 'found in taxon', {'concept': 'infraspecific name'}], ['ectoine/hydroxyectoine ABC transporter permease EhuC    MSMEG_5369', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?w WHERE { resource:3-isopropylmalate_dehydrogenase____MSMEG_2379 property:found_in_taxon ?w . resource:ectoine/hydroxyectoine_ABC_transporter_permease_EhuC____MSMEG_5369 property:found_in_taxon ?w . ?w rdf:type ontology:infraspecific_name }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q21102986 Q27744677
P703
Q181394
USER
Is hypothetical protein    MSMEG_4993 found in the taxon that infraspecific name ?
(Q27744677,P703,Q21102986)
action is_in
entity Q21102986
action find
entity Q27744677
relation P703
['Q27744677', 'P703', 'Q21102986']
ASK WHERE { resource:Q27744677 property:P703 resource:Q21102986 }
Mycobacterium smegmatis str. MC2 155 hypothetical protein    MSMEG_4993
action is_in
entity Mycobacterium smegmatis str. MC2 155
action find
entity hypothetical protein    MSMEG_4993
relation found in taxon
['hypothetical protein    MSMEG_4993', 'found in taxon', 'Mycobacterium smegmatis str. MC2 155']
ASK WHERE { resource:hypothetical_protein____MSMEG_4993 property:found_in_taxon resource:Mycobacterium_smegmatis_str._MC2_155 }
[]
nutrient
SYSTEM
YES
(Q27744677,P703,Q21102986)
action is_in
entity Q21102986
action find
entity Q27744677
relation P703
[ANSWER]
['Q27744677', 'P703', 'Q21102986']
ASK WHERE { resource:Q27744677 property:P703 resource:Q21102986 }
Yes
action is_in
entity Mycobacterium smegmatis str. MC2 155
action find
entity hypothetical protein    MSMEG_4993
relation found in taxon
['hypothetical protein    MSMEG_4993', 'found in taxon', 'Mycobacterium smegmatis str. MC2 155']
ASK WHERE { resource:hypothetical_protein____MSMEG_4993 property:found_in_taxon resource:Mycobacterium_smegmatis_str._MC2_155 }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23185568 Q27747664
P703
Q631147
USER
Which infraspecific names are the taxon to which 3-isopropylmalate dehydrogenase    MSMEG_2379 or amylopullulanase    L102412 belongs to ?
OR((Q27747664,P703,c(Q631147)), (Q23185568,P703,c(Q631147)))
action filter_type
action union
action find
entity Q27747664
relation P703
action find
entity Q23185568
relation P703
type Q631147
{'OR': [['Q27747664', 'P703', {'concept': 'Q631147'}], ['Q23185568', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?k WHERE { { VALUES ( ?u ) { ( resource:Q27747664 ) ( resource:Q23185568 ) } . ?u property:P703 ?k } . ?k rdf:type ontology:Q631147 }
amylopullulanase    L102412 3-isopropylmalate dehydrogenase    MSMEG_2379
action filter_type
action union
action find
entity 3-isopropylmalate dehydrogenase    MSMEG_2379
relation found in taxon
action find
entity amylopullulanase    L102412
relation found in taxon
type infraspecific name
{'OR': [['3-isopropylmalate dehydrogenase    MSMEG_2379', 'found in taxon', {'concept': 'infraspecific name'}], ['amylopullulanase    L102412', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?k WHERE { { VALUES ( ?u ) { ( resource:3-isopropylmalate_dehydrogenase____MSMEG_2379 ) ( resource:amylopullulanase____L102412 ) } . ?u property:found_in_taxon ?k } . ?k rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102986 Q21102967
SYSTEM
Mycobacterium smegmatis str. MC2 155, Lactococcus lactis subsp. lactis Il1403
Q21102986 Q21102967
OR((Q27747664,P703,c(Q631147)), (Q23185568,P703,c(Q631147)))
action filter_type
action union
action find
entity Q27747664
relation P703
action find
entity Q23185568
relation P703
type Q631147
[ANSWERS] are the taxon to which 3-isopropylmalate dehydrogenase MSMEG_2379 or amylopullulanase L102412 belongs to
{'OR': [['Q27747664', 'P703', {'concept': 'Q631147'}], ['Q23185568', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?k WHERE { { VALUES ( ?u ) { ( resource:Q27747664 ) ( resource:Q23185568 ) } . ?u property:P703 ?k } . ?k rdf:type ontology:Q631147 }
Mycobacterium smegmatis str. MC2 155 Lactococcus lactis subsp. lactis Il1403
Mycobacterium smegmatis str. MC2 155 and Lactococcus lactis subsp. lactis Il1403 are the taxon to which 3-isopropylmalate dehydrogenase MSMEG_2379 or amylopullulanase L102412 belongs to
Mycobacterium smegmatis str. MC2 155 Lactococcus lactis subsp. lactis Il1403
action filter_type
action union
action find
entity 3-isopropylmalate dehydrogenase    MSMEG_2379
relation found in taxon
action find
entity amylopullulanase    L102412
relation found in taxon
type infraspecific name
{'OR': [['3-isopropylmalate dehydrogenase    MSMEG_2379', 'found in taxon', {'concept': 'infraspecific name'}], ['amylopullulanase    L102412', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?k WHERE { { VALUES ( ?u ) { ( resource:3-isopropylmalate_dehydrogenase____MSMEG_2379 ) ( resource:amylopullulanase____L102412 ) } . ?u property:found_in_taxon ?k } . ?k rdf:type ontology:infraspecific_name }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Mult. entity type
Q23185568 Q14886374
P702
Q181394
USER
How many nutrients do amylopullulanase    L102412 or GLA encode ?
(c(Q181394),P702,Q23185568) (c(Q181394),P702,Q14886374)
action count
action union
action filter_type
action find_reverse
entity Q23185568
relation P702
type Q181394
action filter_type
action find_reverse
entity Q14886374
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q23185568'] [{'concept': 'Q181394'}, 'P702', 'Q14886374']
SELECT DISTINCT ( COUNT ( ?u ) AS ?i ) WHERE { ?u property:P702 ?y . VALUES ( ?y ) { ( resource:Q23185568 ) ( resource:Q14886374 ) } }
amylopullulanase    L102412 GLA
action count
action union
action filter_type
action find_reverse
entity amylopullulanase    L102412
relation encoded by
type nutrient
action filter_type
action find_reverse
entity GLA
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'amylopullulanase    L102412'] [{'concept': 'nutrient'}, 'encoded by', 'GLA']
SELECT DISTINCT ( COUNT ( ?u ) AS ?i ) WHERE { ?u property:encoded_by ?y . VALUES ( ?y ) { ( resource:amylopullulanase____L102412 ) ( resource:GLA ) } }
[]
nutrient
SYSTEM
2
Q23506738 Q288705
(c(Q181394),P702,Q23185568) (c(Q181394),P702,Q14886374)
action count
action union
action filter_type
action find_reverse
entity Q23185568
relation P702
type Q181394
action filter_type
action find_reverse
entity Q14886374
relation P702
type Q181394
[ANSWER]
[{'concept': 'Q181394'}, 'P702', 'Q23185568'] [{'concept': 'Q181394'}, 'P702', 'Q14886374']
SELECT DISTINCT ( COUNT ( ?u ) AS ?i ) WHERE { ?u property:P702 ?y . VALUES ( ?y ) { ( resource:Q23185568 ) ( resource:Q14886374 ) } }
amylopullulanase    L102412 Alpha-galactosidase A
2
action count
action union
action filter_type
action find_reverse
entity amylopullulanase    L102412
relation encoded by
type nutrient
action filter_type
action find_reverse
entity GLA
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'amylopullulanase    L102412'] [{'concept': 'nutrient'}, 'encoded by', 'GLA']
SELECT DISTINCT ( COUNT ( ?u ) AS ?i ) WHERE { ?u property:encoded_by ?y . VALUES ( ?y ) { ( resource:amylopullulanase____L102412 ) ( resource:GLA ) } }
[]