Simple Question (Direct)
Simple Question
Q22232459
P681
Q5058355
USER
What is a component of sensor protein KdpD    Rv1028c ?
(Q22232459,P681,c(Q5058355))
action filter_type
action find
entity Q22232459
relation P681
type Q5058355
['Q22232459', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:Q5058355 . resource:Q22232459 property:P681 ?x }
sensor protein KdpD    Rv1028c
action filter_type
action find
entity sensor protein KdpD    Rv1028c
relation cell component
type cellular component
['sensor protein KdpD    Rv1028c', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:cellular_component . resource:sensor_protein_KdpD____Rv1028c property:cell_component ?x }
[]
cellular component
Q3824358
SYSTEM
intracellular
Q3824358
(Q22232459,P681,c(Q5058355))
action filter_type
action find
entity Q22232459
relation P681
type Q5058355
A component of sensor protein KdpD Rv1028c is an [ANSWER]
['Q22232459', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:Q5058355 . resource:Q22232459 property:P681 ?x }
intracellular
A component of sensor protein KdpD Rv1028c is an intracellular
intracellular
action filter_type
action find
entity sensor protein KdpD    Rv1028c
relation cell component
type cellular component
['sensor protein KdpD    Rv1028c', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:cellular_component . resource:sensor_protein_KdpD____Rv1028c property:cell_component ?x }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q22232459
P703
Q631147
USER
Which taxon is that nutrient a part of ?
(Q3824358,P703,c(Q631147))
action filter_type
action find
entity Q22232459
relation P703
type Q631147
['Q3824358', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?s WHERE { resource:Q22232459 property:P703 ?s . ?s rdf:type ontology:Q631147 }
sensor protein KdpD    Rv1028c
action filter_type
action find
entity sensor protein KdpD    Rv1028c
relation found in taxon
type infraspecific name
['intracellular', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?s WHERE { resource:sensor_protein_KdpD____Rv1028c property:found_in_taxon ?s . ?s rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102987
SYSTEM
Mycobacterium tuberculosis H37Rv
Q21102987
(Q3824358,P703,c(Q631147))
action filter_type
action find
entity Q22232459
relation P703
type Q631147
Which taxon is that nutrient a part of
['Q3824358', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?s WHERE { resource:Q22232459 property:P703 ?s . ?s rdf:type ontology:Q631147 }
Mycobacterium tuberculosis H37Rv
Which taxon is that nutrient a part of
Mycobacterium tuberculosis H37Rv
action filter_type
action find
entity sensor protein KdpD    Rv1028c
relation found in taxon
type infraspecific name
['intracellular', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?s WHERE { resource:sensor_protein_KdpD____Rv1028c property:found_in_taxon ?s . ?s rdf:type ontology:infraspecific_name }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q22232459
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(c(Q863908),P688,Q21102987)
action filter_type
action find_reverse
entity Q22232459
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q21102987']
SELECT DISTINCT ?p WHERE { ?p property:P688 resource:Q22232459 . ?p rdf:type ontology:Q863908 }
sensor protein KdpD    Rv1028c
action filter_type
action find_reverse
entity sensor protein KdpD    Rv1028c
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Mycobacterium tuberculosis H37Rv']
SELECT DISTINCT ?p WHERE { ?p property:encodes resource:sensor_protein_KdpD____Rv1028c . ?p rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q22228122
SYSTEM
sensor protein KdpD    Rv1028c
Q22228122
(c(Q863908),P688,Q21102987)
action filter_type
action find_reverse
entity Q22232459
relation P688
type Q863908
The sensor protein KdpD Rv1028c encodes that nutrient
[{'concept': 'Q863908'}, 'P688', 'Q21102987']
SELECT DISTINCT ?p WHERE { ?p property:P688 resource:Q22232459 . ?p rdf:type ontology:Q863908 }
sensor protein KdpD    Rv1028c
The sensor protein KdpD Rv1028c encodes that nutrient
sensor protein KdpD    Rv1028c
action filter_type
action find_reverse
entity sensor protein KdpD    Rv1028c
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Mycobacterium tuberculosis H37Rv']
SELECT DISTINCT ?p WHERE { ?p property:encodes resource:sensor_protein_KdpD____Rv1028c . ?p rdf:type ontology:nucleic_acid_sequence }
[]
Quantitative Reasoning (All)
Quantitative|Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q181394 Q181394 Q8386
USER
Which nutrients do exactly 28 nutrients and drugs communicate with ?
(c(Q181394)|c(Q8386),P129,c(Q181394))
action equal
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
value 28
[[{'concept': 'Q181394'}, {'concept': 'Q8386'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?b WHERE { { SELECT DISTINCT ?b ( COUNT ( ?s ) AS ?x ) WHERE { { ?s property:P129 ?b . ?b rdf:type ontology:Q181394 . ?s rdf:type ontology:Q181394 } UNION { ?s property:P129 ?b . ?b rdf:type ontology:Q181394 . ?s rdf:type ontology:Q8386 } } GROUP BY ?b } . FILTER ( ?x = 28 ) }
action equal
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
value 28
[[{'concept': 'nutrient'}, {'concept': 'drug'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?b WHERE { { SELECT DISTINCT ?b ( COUNT ( ?s ) AS ?x ) WHERE { { ?s property:physically_interacts_with ?b . ?b rdf:type ontology:nutrient . ?s rdf:type ontology:nutrient } UNION { ?s property:physically_interacts_with ?b . ?b rdf:type ontology:nutrient . ?s rdf:type ontology:drug } } GROUP BY ?b } . FILTER ( ?x = 28 ) }
[]
nutrient nutrient drug
Q410142 Q21115046
SYSTEM
Sodium-dependent serotonin transporter, 5-hydroxytryptamine receptor 1D
Q410142 Q21115046
(c(Q181394)|c(Q8386),P129,c(Q181394))
action equal
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
value 28
Exactly 28 nutrients and drugs communicate with [ANSWERS]
[[{'concept': 'Q181394'}, {'concept': 'Q8386'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?b WHERE { { SELECT DISTINCT ?b ( COUNT ( ?s ) AS ?x ) WHERE { { ?s property:P129 ?b . ?b rdf:type ontology:Q181394 . ?s rdf:type ontology:Q181394 } UNION { ?s property:P129 ?b . ?b rdf:type ontology:Q181394 . ?s rdf:type ontology:Q8386 } } GROUP BY ?b } . FILTER ( ?x = 28 ) }
Sodium-dependent serotonin transporter 5-hydroxytryptamine receptor 1D
Exactly 28 nutrients and drugs communicate with Sodium-dependent serotonin transporter and 5-hydroxytryptamine receptor 1D
Sodium-dependent serotonin transporter 5-hydroxytryptamine receptor 1D
action equal
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
value 28
[[{'concept': 'nutrient'}, {'concept': 'drug'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?b WHERE { { SELECT DISTINCT ?b ( COUNT ( ?s ) AS ?x ) WHERE { { ?s property:physically_interacts_with ?b . ?b rdf:type ontology:nutrient . ?s rdf:type ontology:nutrient } UNION { ?s property:physically_interacts_with ?b . ?b rdf:type ontology:nutrient . ?s rdf:type ontology:drug } } GROUP BY ?b } . FILTER ( ?x = 28 ) }
[]
Simple Question (Direct)
Simple Question|Mult. Entity|Indirect
Q410142 Q21115046
P702
Q863908
USER
Which nucleic acid sequences encode Sodium-dependent serotonin transporter and 5-hydroxytryptamine receptor 1D ?
(Q410142,P702,c(Q863908)) (Q21115046,P702,c(Q863908))
action union
action filter_type
action find
entity Q410142
relation P702
type Q863908
action filter_type
action find
entity Q21115046
relation P702
type Q863908
['Q410142', 'P702', {'concept': 'Q863908'}] ['Q21115046', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?d WHERE { { resource:Q410142 property:P702 ?d . ?d rdf:type ontology:Q863908 } UNION { resource:Q21115046 property:P702 ?d . ?d rdf:type ontology:Q863908 } }
Sodium-dependent serotonin transporter 5-hydroxytryptamine receptor 1D
action union
action filter_type
action find
entity Sodium-dependent serotonin transporter
relation encoded by
type nucleic acid sequence
action filter_type
action find
entity 5-hydroxytryptamine receptor 1D
relation encoded by
type nucleic acid sequence
['Sodium-dependent serotonin transporter', 'encoded by', {'concept': 'nucleic acid sequence'}] ['5-hydroxytryptamine receptor 1D', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?d WHERE { { resource:Sodium-dependent_serotonin_transporter property:encoded_by ?d . ?d rdf:type ontology:nucleic_acid_sequence } UNION { resource:5-hydroxytryptamine_receptor_1D property:encoded_by ?d . ?d rdf:type ontology:nucleic_acid_sequence } }
[]
nucleic acid sequence
Q14860818 Q18027426
SYSTEM
SLC6A4, HTR1D
Q14860818 Q18027426
(Q410142,P702,c(Q863908)) (Q21115046,P702,c(Q863908))
action union
action filter_type
action find
entity Q410142
relation P702
type Q863908
action filter_type
action find
entity Q21115046
relation P702
type Q863908
[ANSWERS] encode Sodium-dependent serotonin transporter and 5-hydroxytryptamine receptor 1D
['Q410142', 'P702', {'concept': 'Q863908'}] ['Q21115046', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?d WHERE { { resource:Q410142 property:P702 ?d . ?d rdf:type ontology:Q863908 } UNION { resource:Q21115046 property:P702 ?d . ?d rdf:type ontology:Q863908 } }
SLC6A4 HTR1D
SLC6A4 and HTR1D encode Sodium-dependent serotonin transporter and 5-hydroxytryptamine receptor 1D
SLC6A4 HTR1D
action union
action filter_type
action find
entity Sodium-dependent serotonin transporter
relation encoded by
type nucleic acid sequence
action filter_type
action find
entity 5-hydroxytryptamine receptor 1D
relation encoded by
type nucleic acid sequence
['Sodium-dependent serotonin transporter', 'encoded by', {'concept': 'nucleic acid sequence'}] ['5-hydroxytryptamine receptor 1D', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?d WHERE { { resource:Sodium-dependent_serotonin_transporter property:encoded_by ?d . ?d rdf:type ontology:nucleic_acid_sequence } UNION { resource:5-hydroxytryptamine_receptor_1D property:encoded_by ?d . ?d rdf:type ontology:nucleic_acid_sequence } }
[]
Clarification
Simple Question|Single Entity|Indirect
Q18027426
P684
Q863908
USER
What is an otrhologus gene for that one ?
(Q18027426,P684,c(Q863908))
action filter_type
action find
entity Q18027426
relation P684
type Q863908
['Q18027426', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?h WHERE { resource:Q18027426 property:P684 ?h . ?h rdf:type ontology:Q863908 }
HTR1D
action filter_type
action find
entity HTR1D
relation ortholog
type nucleic acid sequence
['HTR1D', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?h WHERE { resource:HTR1D property:ortholog ?h . ?h rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Clarification for simple ques.
Q18027426
SYSTEM
Did you mean HTR1D ?
Q14860818 Q18027426
(Q14860818,P684,c(Q863908)) (Q18027426,P684,c(Q863908))
[ANSWER]
['Q14860818', 'P684', {'concept': 'Q863908'}] ['Q18027426', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?h WHERE { resource:Q18027426 property:P684 ?h . ?h rdf:type ontology:Q863908 }
SLC6A4 HTR1D
Did you mean HTR1D ?
HTR1D
['SLC6A4', 'ortholog', {'concept': 'nucleic acid sequence'}] ['HTR1D', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?h WHERE { resource:HTR1D property:ortholog ?h . ?h rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
USER
Yes
(Q18027426,P684,c(Q863908))
['Q18027426', 'P684', {'concept': 'Q863908'}]
['HTR1D', 'ortholog', {'concept': 'nucleic acid sequence'}]
[]
Q18251365
SYSTEM
Htr1d
Q18251365
(Q18027426,P684,c(Q863908))
action filter_type
action find
entity Q18027426
relation P684
type Q863908
An otrhologus gene for that one is the [ANSWER]
['Q18027426', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?h WHERE { resource:Q18027426 property:P684 ?h . ?h rdf:type ontology:Q863908 }
Htr1d
An otrhologus gene for that one is the Htr1d
Htr1d
action filter_type
action find
entity HTR1D
relation ortholog
type nucleic acid sequence
['HTR1D', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?h WHERE { resource:HTR1D property:ortholog ?h . ?h rdf:type ontology:nucleic_acid_sequence }
[]