Simple Question (Direct)
Simple Question
Q22301266
P682
Q1057
USER
What is the metabolic process that diacylglycerol kinase    Cj0257 is involved in ?
(Q22301266,P682,c(Q1057))
action filter_type
action find
entity Q22301266
relation P682
type Q1057
['Q22301266', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?y WHERE { resource:Q22301266 property:P682 ?y . ?y rdf:type ontology:Q1057 }
diacylglycerol kinase    Cj0257
action filter_type
action find
entity diacylglycerol kinase    Cj0257
relation biological process
type metabolic process
['diacylglycerol kinase    Cj0257', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?y WHERE { resource:diacylglycerol_kinase____Cj0257 property:biological_process ?y . ?y rdf:type ontology:metabolic_process }
[]
metabolic process
Q14349667
SYSTEM
lipid metabolic process
Q14349667
(Q22301266,P682,c(Q1057))
action filter_type
action find
entity Q22301266
relation P682
type Q1057
The metabolic process that diacylglycerol kinase Cj0257 is involved in is [ANSWER]
['Q22301266', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?y WHERE { resource:Q22301266 property:P682 ?y . ?y rdf:type ontology:Q1057 }
lipid metabolic process
The metabolic process that diacylglycerol kinase Cj0257 is involved in is lipid metabolic process
lipid metabolic process
action filter_type
action find
entity diacylglycerol kinase    Cj0257
relation biological process
type metabolic process
['diacylglycerol kinase    Cj0257', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?y WHERE { resource:diacylglycerol_kinase____Cj0257 property:biological_process ?y . ?y rdf:type ontology:metabolic_process }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23514991 Q22301266
P702
Q863908
USER
Which nucleic acid sequences encodes diacylglycerol kinase    Cj0257 or MarR family transcriptional regulator    BSU08410 ?
OR((Q22301266,P702,c(Q863908)), (Q23514991,P702,c(Q863908)))
action filter_type
action union
action find
entity Q22301266
relation P702
action find
entity Q23514991
relation P702
type Q863908
{'OR': [['Q22301266', 'P702', {'concept': 'Q863908'}], ['Q23514991', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?w WHERE { { { resource:Q23514991 property:P702 ?w } UNION { resource:Q22301266 property:P702 ?w } } . ?w rdf:type ontology:Q863908 }
MarR family transcriptional regulator    BSU08410 diacylglycerol kinase    Cj0257
action filter_type
action union
action find
entity diacylglycerol kinase    Cj0257
relation encoded by
action find
entity MarR family transcriptional regulator    BSU08410
relation encoded by
type nucleic acid sequence
{'OR': [['diacylglycerol kinase    Cj0257', 'encoded by', {'concept': 'nucleic acid sequence'}], ['MarR family transcriptional regulator    BSU08410', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?w WHERE { { { resource:MarR_family_transcriptional_regulator____BSU08410 property:encoded_by ?w } UNION { resource:diacylglycerol_kinase____Cj0257 property:encoded_by ?w } } . ?w rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23349555 Q22297329
SYSTEM
MarR family transcriptional regulator    BSU08410, diacylglycerol kinase    Cj0257
Q23349555 Q22297329
OR((Q22301266,P702,c(Q863908)), (Q23514991,P702,c(Q863908)))
action filter_type
action union
action find
entity Q22301266
relation P702
action find
entity Q23514991
relation P702
type Q863908
[ANSWERS]
{'OR': [['Q22301266', 'P702', {'concept': 'Q863908'}], ['Q23514991', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?w WHERE { { { resource:Q23514991 property:P702 ?w } UNION { resource:Q22301266 property:P702 ?w } } . ?w rdf:type ontology:Q863908 }
MarR family transcriptional regulator    BSU08410 diacylglycerol kinase    Cj0257
And MarR family transcriptional regulator BSU08410 and diacylglycerol kinase Cj0257 encode diacylglycerol kinase Cj0257 or MarR family transcriptional regulator BSU08410
MarR family transcriptional regulator    BSU08410 diacylglycerol kinase    Cj0257
action filter_type
action union
action find
entity diacylglycerol kinase    Cj0257
relation encoded by
action find
entity MarR family transcriptional regulator    BSU08410
relation encoded by
type nucleic acid sequence
{'OR': [['diacylglycerol kinase    Cj0257', 'encoded by', {'concept': 'nucleic acid sequence'}], ['MarR family transcriptional regulator    BSU08410', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?w WHERE { { { resource:MarR_family_transcriptional_regulator____BSU08410 property:encoded_by ?w } UNION { resource:diacylglycerol_kinase____Cj0257 property:encoded_by ?w } } . ?w rdf:type ontology:nucleic_acid_sequence }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q181394 Q79529 Q8386
USER
How many nutrients do around 56 chemical substances and drugs interact with ?
(c(Q79529)|c(Q8386),P129,c(Q181394))
action count
action approx
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
value 56
[[{'concept': 'Q79529'}, {'concept': 'Q8386'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?l ) AS ?y ) WHERE { { SELECT DISTINCT ( COUNT ( ?h ) AS ?p ) ?l WHERE { { ?h property:P129 ?l . ?l rdf:type ontology:Q181394 . ?h rdf:type ontology:Q79529 } UNION { ?h property:P129 ?l . ?h rdf:type ontology:Q8386 . ?l rdf:type ontology:Q181394 } } GROUP BY ?l } . FILTER ( ?p = 56 ) }
action count
action approx
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
value 56
[[{'concept': 'chemical substance'}, {'concept': 'drug'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?l ) AS ?y ) WHERE { { SELECT DISTINCT ( COUNT ( ?h ) AS ?p ) ?l WHERE { { ?h property:physically_interacts_with ?l . ?l rdf:type ontology:nutrient . ?h rdf:type ontology:chemical_substance } UNION { ?h property:physically_interacts_with ?l . ?h rdf:type ontology:drug . ?l rdf:type ontology:nutrient } } GROUP BY ?l } . FILTER ( ?p = 56 ) }
[]
nutrient chemical substance drug
SYSTEM
5
Q309513 Q288797 Q21115046 Q21109363 Q2034004
(c(Q79529)|c(Q8386),P129,c(Q181394))
action count
action approx
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
value 56
[ANSWER]
[[{'concept': 'Q79529'}, {'concept': 'Q8386'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?l ) AS ?y ) WHERE { { SELECT DISTINCT ( COUNT ( ?h ) AS ?p ) ?l WHERE { { ?h property:P129 ?l . ?l rdf:type ontology:Q181394 . ?h rdf:type ontology:Q79529 } UNION { ?h property:P129 ?l . ?h rdf:type ontology:Q8386 . ?l rdf:type ontology:Q181394 } } GROUP BY ?l } . FILTER ( ?p = 56 ) }
Histamine H1 receptor 5-hydroxytryptamine receptor 1B 5-hydroxytryptamine receptor 1D 5-hydroxytryptamine receptor 6 D(2) dopamine receptor
5
action count
action approx
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
value 56
[[{'concept': 'chemical substance'}, {'concept': 'drug'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?l ) AS ?y ) WHERE { { SELECT DISTINCT ( COUNT ( ?h ) AS ?p ) ?l WHERE { { ?h property:physically_interacts_with ?l . ?l rdf:type ontology:nutrient . ?h rdf:type ontology:chemical_substance } UNION { ?h property:physically_interacts_with ?l . ?h rdf:type ontology:drug . ?l rdf:type ontology:nutrient } } GROUP BY ?l } . FILTER ( ?p = 56 ) }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23349555
P688
Q181394
USER
What does that nucleic acid sequence encode ?
action filter_type
action find
entity Q23349555
relation P688
type Q181394
SELECT DISTINCT ?n WHERE { resource:Q23349555 property:P688 ?n . ?n rdf:type ontology:Q181394 }
MarR family transcriptional regulator    BSU08410
action filter_type
action find
entity MarR family transcriptional regulator    BSU08410
relation encodes
type nutrient
SELECT DISTINCT ?n WHERE { resource:MarR_family_transcriptional_regulator____BSU08410 property:encodes ?n . ?n rdf:type ontology:nutrient }
[]
nutrient
Q23514991
SYSTEM
MarR family transcriptional regulator    BSU08410
Q23514991
action filter_type
action find
entity Q23349555
relation P688
type Q181394
That nucleic acid sequence encodes the MarR family transcriptional regulator BSU08410
SELECT DISTINCT ?n WHERE { resource:Q23349555 property:P688 ?n . ?n rdf:type ontology:Q181394 }
MarR family transcriptional regulator    BSU08410
That nucleic acid sequence encodes the MarR family transcriptional regulator BSU08410
MarR family transcriptional regulator    BSU08410
action filter_type
action find
entity MarR family transcriptional regulator    BSU08410
relation encodes
type nutrient
SELECT DISTINCT ?n WHERE { resource:MarR_family_transcriptional_regulator____BSU08410 property:encodes ?n . ?n rdf:type ontology:nutrient }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23514991
P703
Q631147
USER
Where is that nutrient found ?
(Q23514991,P703,c(Q631147))
action filter_type
action find
entity Q23514991
relation P703
type Q631147
['Q23514991', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?m WHERE { resource:Q23514991 property:P703 ?m . ?m rdf:type ontology:Q631147 }
MarR family transcriptional regulator    BSU08410
action filter_type
action find
entity MarR family transcriptional regulator    BSU08410
relation found in taxon
type infraspecific name
['MarR family transcriptional regulator    BSU08410', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?m WHERE { resource:MarR_family_transcriptional_regulator____BSU08410 property:found_in_taxon ?m . ?m rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102971
SYSTEM
Bacillus subtilis subsp. subtilis str. 168
Q21102971
(Q23514991,P703,c(Q631147))
action filter_type
action find
entity Q23514991
relation P703
type Q631147
That nutrient is found in [ANSWER]
['Q23514991', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?m WHERE { resource:Q23514991 property:P703 ?m . ?m rdf:type ontology:Q631147 }
Bacillus subtilis subsp. subtilis str. 168
That nutrient is found in Bacillus subtilis subsp. subtilis str. 168
Bacillus subtilis subsp. subtilis str. 168
action filter_type
action find
entity MarR family transcriptional regulator    BSU08410
relation found in taxon
type infraspecific name
['MarR family transcriptional regulator    BSU08410', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?m WHERE { resource:MarR_family_transcriptional_regulator____BSU08410 property:found_in_taxon ?m . ?m rdf:type ontology:infraspecific_name }
[]
Comparative Reasoning (All)
Comparative|More/Less|Single entity type
Q14905125
P682
Q1057 Q181394
USER
Which metabolic processes are more number of nutrients involved in than neurotransmitter metabolic process ?
(c(Q181394),P682,c(Q1057))
action greater
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
action count
action filter_type
action find
entity Q14905125
relation P682
type Q1057
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?r WHERE { { SELECT DISTINCT ?r ( COUNT ( ?s ) AS ?e ) WHERE { ?s property:P682 ?r . ?r rdf:type ontology:Q1057 . ?s rdf:type ontology:Q181394 } GROUP BY ?r } . { SELECT DISTINCT ( COUNT ( ?o ) AS ?i ) WHERE { resource:Q14905125 property:P682 ?o . ?o rdf:type ontology:Q1057 } } . FILTER ( ?e > ?i ) }
neurotransmitter metabolic process
action greater
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
action count
action filter_type
action find
entity neurotransmitter metabolic process
relation biological process
type metabolic process
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?r WHERE { { SELECT DISTINCT ?r ( COUNT ( ?s ) AS ?e ) WHERE { ?s property:biological_process ?r . ?r rdf:type ontology:metabolic_process . ?s rdf:type ontology:nutrient } GROUP BY ?r } . { SELECT DISTINCT ( COUNT ( ?o ) AS ?i ) WHERE { resource:neurotransmitter_metabolic_process property:biological_process ?o . ?o rdf:type ontology:metabolic_process } } . FILTER ( ?e > ?i ) }
[]
metabolic process nutrient
Q14905693 Q133895 Q21102358
SYSTEM
translational initiation, tricarboxylic acid cycle, sulfur compound metabolic process
Q14864889 Q14905693 Q14860777 Q21097138 Q14819379 Q21759902 Q133895 Q14863351 Q21102358 Q14880758 Q21761098 Q14762260 Q21100626 Q14916189 Q14349667 Q14349764 Q21159531 Q22274640 Q21096256 Q14863432 Q14909347 Q15313450 Q179924 Q21101220 Q21095286 Q14358591 Q838181 Q14859896 Q21103172 Q22276072 Q14897831 Q14645736 Q14864262 Q14859628 Q14819787 Q14819781 Q22279537 Q22283508 Q14327719 Q21124620 Q14860507 Q14890104 Q14864417 Q14864414 Q900386 Q21760838
(c(Q181394),P682,c(Q1057))
action greater
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
action count
action filter_type
action find
entity Q14905125
relation P682
type Q1057
The [ANSWERS] are more number of nutrients involved in than neurotransmitter metabolic process
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?r WHERE { { SELECT DISTINCT ?r ( COUNT ( ?s ) AS ?e ) WHERE { ?s property:P682 ?r . ?r rdf:type ontology:Q1057 . ?s rdf:type ontology:Q181394 } GROUP BY ?r } . { SELECT DISTINCT ( COUNT ( ?o ) AS ?i ) WHERE { resource:Q14905125 property:P682 ?o . ?o rdf:type ontology:Q1057 } } . FILTER ( ?e > ?i ) }
cellular aromatic compound metabolic process translational initiation hormone biosynthetic process cellular aldehyde metabolic process one-carbon metabolic process carbon fixation tricarboxylic acid cycle signal transduction by protein phosphorylation sulfur compound metabolic process nucleobase-containing compound metabolic process photosynthesis carbohydrate metabolic process peptidyl-lysine modification to peptidyl-hypusine organic acid metabolic process lipid metabolic process oxidation-reduction process selenium compound metabolic process cellular biosynthetic process cellular carbohydrate metabolic process reactive oxygen species metabolic process flavonoid metabolic process methylation-dependent chromatin silencing bioluminescence wax biosynthetic process amyloid fibril formation xenobiotic metabolic process respiratory burst cellular amino acid metabolic process DNA protection glycosyl compound metabolic process isotype switching thyroid hormone metabolic process protein metabolic process cellular lipid metabolic process peptide hormone processing generation of precursor metabolites and energy viral RNA genome replication IRES-dependent viral translational initiation small molecule metabolic process transposition, DNA-mediated receptor internalization toxin metabolic process heterocycle metabolic process drug metabolic process demethylation phosphorus metabolic process
The translational initiation, tricarboxylic acid cycle and sulfur compound metabolic process are more number of nutrients involved in than neurotransmitter metabolic process
translational initiation tricarboxylic acid cycle sulfur compound metabolic process
action greater
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
action count
action filter_type
action find
entity neurotransmitter metabolic process
relation biological process
type metabolic process
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?r WHERE { { SELECT DISTINCT ?r ( COUNT ( ?s ) AS ?e ) WHERE { ?s property:biological_process ?r . ?r rdf:type ontology:metabolic_process . ?s rdf:type ontology:nutrient } GROUP BY ?r } . { SELECT DISTINCT ( COUNT ( ?o ) AS ?i ) WHERE { resource:neurotransmitter_metabolic_process property:biological_process ?o . ?o rdf:type ontology:metabolic_process } } . FILTER ( ?e > ?i ) }
[]
Comparative Reasoning (All)
Comparative|More/Less|Single entity type|Incomplete
Q14909347
P682
Q1057 Q181394
USER
And what about flavonoid metabolic process?
(c(Q181394),P682,c(Q1057))
action greater
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
action count
action filter_type
action find
entity Q14909347
relation P682
type Q1057
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?v WHERE { FILTER ( ?s > ?k ) . { SELECT DISTINCT ( COUNT ( ?a ) AS ?k ) WHERE { resource:Q14909347 property:P682 ?a . ?a rdf:type ontology:Q1057 } } . { SELECT DISTINCT ?v ( COUNT ( ?l ) AS ?s ) WHERE { ?l rdf:type ontology:Q181394 . ?v rdf:type ontology:Q1057 . ?l property:P682 ?v } GROUP BY ?v } }
flavonoid metabolic process
action greater
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
action count
action filter_type
action find
entity flavonoid metabolic process
relation biological process
type metabolic process
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?v WHERE { FILTER ( ?s > ?k ) . { SELECT DISTINCT ( COUNT ( ?a ) AS ?k ) WHERE { resource:flavonoid_metabolic_process property:biological_process ?a . ?a rdf:type ontology:metabolic_process } } . { SELECT DISTINCT ?v ( COUNT ( ?l ) AS ?s ) WHERE { ?l rdf:type ontology:nutrient . ?v rdf:type ontology:metabolic_process . ?l property:biological_process ?v } GROUP BY ?v } }
[]
metabolic process nutrient
Q14905693 Q133895 Q21102358
SYSTEM
translational initiation, tricarboxylic acid cycle, sulfur compound metabolic process
Q14864889 Q14905693 Q14860777 Q21097138 Q14819379 Q21759902 Q133895 Q14863351 Q21102358 Q14880758 Q21761098 Q14762260 Q21100626 Q14916189 Q14349667 Q14349764 Q21159531 Q22274640 Q21096256 Q14863432 Q15313450 Q179924 Q21095286 Q14358591 Q838181 Q14859896 Q21103172 Q22276072 Q14897831 Q14645736 Q14864262 Q14859628 Q14819787 Q14819781 Q22279537 Q22283508 Q21124620 Q14860507 Q14890104 Q14864417 Q14864414 Q900386 Q21760838
(c(Q181394),P682,c(Q1057))
action greater
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
action count
action filter_type
action find
entity Q14909347
relation P682
type Q1057
[ANSWERS]
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?v WHERE { FILTER ( ?s > ?k ) . { SELECT DISTINCT ( COUNT ( ?a ) AS ?k ) WHERE { resource:Q14909347 property:P682 ?a . ?a rdf:type ontology:Q1057 } } . { SELECT DISTINCT ?v ( COUNT ( ?l ) AS ?s ) WHERE { ?l rdf:type ontology:Q181394 . ?v rdf:type ontology:Q1057 . ?l property:P682 ?v } GROUP BY ?v } }
cellular aromatic compound metabolic process translational initiation hormone biosynthetic process cellular aldehyde metabolic process one-carbon metabolic process carbon fixation tricarboxylic acid cycle signal transduction by protein phosphorylation sulfur compound metabolic process nucleobase-containing compound metabolic process photosynthesis carbohydrate metabolic process peptidyl-lysine modification to peptidyl-hypusine organic acid metabolic process lipid metabolic process oxidation-reduction process selenium compound metabolic process cellular biosynthetic process cellular carbohydrate metabolic process reactive oxygen species metabolic process methylation-dependent chromatin silencing bioluminescence amyloid fibril formation xenobiotic metabolic process respiratory burst cellular amino acid metabolic process DNA protection glycosyl compound metabolic process isotype switching thyroid hormone metabolic process protein metabolic process cellular lipid metabolic process peptide hormone processing generation of precursor metabolites and energy viral RNA genome replication IRES-dependent viral translational initiation transposition, DNA-mediated receptor internalization toxin metabolic process heterocycle metabolic process drug metabolic process demethylation phosphorus metabolic process
translational initiation tricarboxylic acid cycle sulfur compound metabolic process
action greater
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
action count
action filter_type
action find
entity flavonoid metabolic process
relation biological process
type metabolic process
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?v WHERE { FILTER ( ?s > ?k ) . { SELECT DISTINCT ( COUNT ( ?a ) AS ?k ) WHERE { resource:flavonoid_metabolic_process property:biological_process ?a . ?a rdf:type ontology:metabolic_process } } . { SELECT DISTINCT ?v ( COUNT ( ?l ) AS ?s ) WHERE { ?l rdf:type ontology:nutrient . ?v rdf:type ontology:metabolic_process . ?l property:biological_process ?v } GROUP BY ?v } }
[]