Simple Question (Direct)
Simple Question
Q27547932
P681
Q15989253
USER
Which parts are components of Mcx1p YBR227C ?
(Q27547932,P681,c(Q15989253))
action filter_type
action find
entity Q27547932
relation P681
type Q15989253
['Q27547932', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?l WHERE { resource:Q27547932 property:P681 ?l . ?l rdf:type ontology:Q15989253 }
Mcx1p YBR227C
action filter_type
action find
entity Mcx1p YBR227C
relation cell component
type part
['Mcx1p YBR227C', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?l WHERE { resource:Mcx1p_YBR227C property:cell_component ?l . ?l rdf:type ontology:part }
[]
part
Q39572 Q14349455
SYSTEM
mitochondrion, membrane
Q39572 Q14349455
(Q27547932,P681,c(Q15989253))
action filter_type
action find
entity Q27547932
relation P681
type Q15989253
The [ANSWERS] are components of Mcx1p YBR227C
['Q27547932', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?l WHERE { resource:Q27547932 property:P681 ?l . ?l rdf:type ontology:Q15989253 }
mitochondrion membrane
The mitochondrion and membrane are components of Mcx1p YBR227C
mitochondrion membrane
action filter_type
action find
entity Mcx1p YBR227C
relation cell component
type part
['Mcx1p YBR227C', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?l WHERE { resource:Mcx1p_YBR227C property:cell_component ?l . ?l rdf:type ontology:part }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q27547932
P688
Q863908
USER
What is the nucleic acid sequence that is encoded by Mcx1p YBR227C ?
(c(Q863908),P688,Q27547932)
action filter_type
action find_reverse
entity Q27547932
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q27547932']
SELECT DISTINCT ?o WHERE { ?o property:P688 resource:Q27547932 . ?o rdf:type ontology:Q863908 }
Mcx1p YBR227C
action filter_type
action find_reverse
entity Mcx1p YBR227C
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Mcx1p YBR227C']
SELECT DISTINCT ?o WHERE { ?o property:encodes resource:Mcx1p_YBR227C . ?o rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q27540776
SYSTEM
Mcx1p YBR227C
Q27540776
(c(Q863908),P688,Q27547932)
action filter_type
action find_reverse
entity Q27547932
relation P688
type Q863908
The nucleic acid sequence that is encoded by Mcx 1p YBR227C is called [ANSWER]
[{'concept': 'Q863908'}, 'P688', 'Q27547932']
SELECT DISTINCT ?o WHERE { ?o property:P688 resource:Q27547932 . ?o rdf:type ontology:Q863908 }
Mcx1p YBR227C
The nucleic acid sequence that is encoded by Mcx 1p YBR227C is called Mcx1p YBR227C
Mcx1p YBR227C
action filter_type
action find_reverse
entity Mcx1p YBR227C
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Mcx1p YBR227C']
SELECT DISTINCT ?o WHERE { ?o property:encodes resource:Mcx1p_YBR227C . ?o rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q27540776
P703
Q631147
USER
What is the taxon to which that nucleic acid sequence belongs to ?
(Q27540776,P703,c(Q631147))
action filter_type
action find
entity Q27540776
relation P703
type Q631147
['Q27540776', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?z WHERE { resource:Q27540776 property:P703 ?z . ?z rdf:type ontology:Q631147 }
Mcx1p YBR227C
action filter_type
action find
entity Mcx1p YBR227C
relation found in taxon
type infraspecific name
['Mcx1p YBR227C', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?z WHERE { resource:Mcx1p_YBR227C property:found_in_taxon ?z . ?z rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q27510868
SYSTEM
Saccharomyces cerevisiae S288c
Q27510868
(Q27540776,P703,c(Q631147))
action filter_type
action find
entity Q27540776
relation P703
type Q631147
[ANSWER]
['Q27540776', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?z WHERE { resource:Q27540776 property:P703 ?z . ?z rdf:type ontology:Q631147 }
Saccharomyces cerevisiae S288c
Saccharomyces cerevisiae S288c
Saccharomyces cerevisiae S288c
action filter_type
action find
entity Mcx1p YBR227C
relation found in taxon
type infraspecific name
['Mcx1p YBR227C', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?z WHERE { resource:Mcx1p_YBR227C property:found_in_taxon ?z . ?z rdf:type ontology:infraspecific_name }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q27540776
P702
Q181394
USER
Which nutrient is encoded by that nucleic acid sequence ?
(c(Q181394),P702,Q27510868)
action filter_type
action find_reverse
entity Q27540776
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q27510868']
SELECT DISTINCT ?v WHERE { ?v property:P702 resource:Q27540776 . ?v rdf:type ontology:Q181394 }
Mcx1p YBR227C
action filter_type
action find_reverse
entity Mcx1p YBR227C
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'Saccharomyces cerevisiae S288c']
SELECT DISTINCT ?v WHERE { ?v property:encoded_by resource:Mcx1p_YBR227C . ?v rdf:type ontology:nutrient }
[]
nutrient
Q27547932
SYSTEM
Mcx1p YBR227C
Q27547932
(c(Q181394),P702,Q27510868)
action filter_type
action find_reverse
entity Q27540776
relation P702
type Q181394
Gene [ANSWER] is encoded by that nucleic acid sequence
[{'concept': 'Q181394'}, 'P702', 'Q27510868']
SELECT DISTINCT ?v WHERE { ?v property:P702 resource:Q27540776 . ?v rdf:type ontology:Q181394 }
Mcx1p YBR227C
Gene Mcx1p YBR227C is encoded by that nucleic acid sequence
Mcx1p YBR227C
action filter_type
action find_reverse
entity Mcx1p YBR227C
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'Saccharomyces cerevisiae S288c']
SELECT DISTINCT ?v WHERE { ?v property:encoded_by resource:Mcx1p_YBR227C . ?v rdf:type ontology:nutrient }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q27547932 Q23362419
P702
Q863908
USER
Does hypothetical protein    RB5350 encode Mcx1p YBR227C ?
(Q27547932,P702,Q23362419)
action is_in
entity Q23362419
action find
entity Q27547932
relation P702
['Q27547932', 'P702', 'Q23362419']
ASK WHERE { resource:Q27547932 property:P702 resource:Q23362419 }
Mcx1p YBR227C hypothetical protein    RB5350
action is_in
entity hypothetical protein    RB5350
action find
entity Mcx1p YBR227C
relation encoded by
['Mcx1p YBR227C', 'encoded by', 'hypothetical protein    RB5350']
ASK WHERE { resource:Mcx1p_YBR227C property:encoded_by resource:hypothetical_protein____RB5350 }
[]
nucleic acid sequence
SYSTEM
NO
(Q27547932,P702,Q23362419)
action is_in
entity Q23362419
action find
entity Q27547932
relation P702
[ANSWER]
['Q27547932', 'P702', 'Q23362419']
ASK WHERE { resource:Q27547932 property:P702 resource:Q23362419 }
No
action is_in
entity hypothetical protein    RB5350
action find
entity Mcx1p YBR227C
relation encoded by
['Mcx1p YBR227C', 'encoded by', 'hypothetical protein    RB5350']
ASK WHERE { resource:Mcx1p_YBR227C property:encoded_by resource:hypothetical_protein____RB5350 }
[]
Quantitative Reasoning (All)
Quantitative|Atleast/ Atmost/ Approx. the same/Equal|Single entity type
P682
Q1057 Q181394
USER
Which metabolic processes are a biological processes that around 2706 nutrients are involved in ?
(c(Q181394),P682,c(Q1057))
action approx
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
value 2706
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?i WHERE { { SELECT DISTINCT ?i ( COUNT ( ?z ) AS ?e ) WHERE { ?z property:P682 ?i . ?z rdf:type ontology:Q181394 . ?i rdf:type ontology:Q1057 } GROUP BY ?i } . FILTER ( ?e = 2706 ) }
action approx
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
value 2706
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?i WHERE { { SELECT DISTINCT ?i ( COUNT ( ?z ) AS ?e ) WHERE { ?z property:biological_process ?i . ?z rdf:type ontology:nutrient . ?i rdf:type ontology:metabolic_process } GROUP BY ?i } . FILTER ( ?e = 2706 ) }
[]
metabolic process nutrient
Q14762260 Q14863351 Q14349667
SYSTEM
carbohydrate metabolic process, signal transduction by protein phosphorylation, lipid metabolic process
Q14863351 Q14762260 Q14349667 Q14859896 Q21124620
(c(Q181394),P682,c(Q1057))
action approx
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
value 2706
[ANSWERS] are a biological processes that around 2706 nutrients are involved in
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?i WHERE { { SELECT DISTINCT ?i ( COUNT ( ?z ) AS ?e ) WHERE { ?z property:P682 ?i . ?z rdf:type ontology:Q181394 . ?i rdf:type ontology:Q1057 } GROUP BY ?i } . FILTER ( ?e = 2706 ) }
signal transduction by protein phosphorylation carbohydrate metabolic process lipid metabolic process cellular amino acid metabolic process transposition, DNA-mediated
Carbohydrate metabolic process, signal transduction by protein phosphorylation and lipid metabolic process are a biological processes that around 2706 nutrients are involved in
carbohydrate metabolic process signal transduction by protein phosphorylation lipid metabolic process
action approx
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
value 2706
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?i WHERE { { SELECT DISTINCT ?i ( COUNT ( ?z ) AS ?e ) WHERE { ?z property:biological_process ?i . ?z rdf:type ontology:nutrient . ?i rdf:type ontology:metabolic_process } GROUP BY ?i } . FILTER ( ?e = 2706 ) }
[]