Simple Question (Direct)
Simple Question
Q23470617
P702
Q863908
USER
Which gene encodes guanylate kinase    CT0247 ?
(Q23470617,P702,c(Q863908))
action filter_type
action find
entity Q23470617
relation P702
type Q863908
['Q23470617', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?c WHERE { ?c rdf:type ontology:Q863908 . resource:Q23470617 property:P702 ?c }
guanylate kinase    CT0247
action filter_type
action find
entity guanylate kinase    CT0247
relation encoded by
type nucleic acid sequence
['guanylate kinase    CT0247', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?c WHERE { ?c rdf:type ontology:nucleic_acid_sequence . resource:guanylate_kinase____CT0247 property:encoded_by ?c }
[]
nucleic acid sequence
Q24086453
SYSTEM
guanylate kinase    CT0247
Q24086453
(Q23470617,P702,c(Q863908))
action filter_type
action find
entity Q23470617
relation P702
type Q863908
Guanylate kinase CT0247 encodes guanylate kinase CT0247
['Q23470617', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?c WHERE { ?c rdf:type ontology:Q863908 . resource:Q23470617 property:P702 ?c }
guanylate kinase    CT0247
Guanylate kinase CT0247 encodes guanylate kinase CT0247
guanylate kinase    CT0247
action filter_type
action find
entity guanylate kinase    CT0247
relation encoded by
type nucleic acid sequence
['guanylate kinase    CT0247', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?c WHERE { ?c rdf:type ontology:nucleic_acid_sequence . resource:guanylate_kinase____CT0247 property:encoded_by ?c }
[]
Verification (Boolean) (All)
Verification|3 entities, 2 direct, 2(direct) are query entities, subject is indirect
Q24086453 Q24109725 Q23470617
P688
Q181394
USER
Does that nucleic acid sequence encodes transposase number 2 for insertion sequence ISRM26    SMc03300 and guanylate kinase    CT0247 ?
(Q24086453,P688,Q24109725) (Q24086453,P688,Q23470617)
action is_in
entity Q24086453
action intersection
action find_reverse
entity Q24109725
relation P688
action find_reverse
entity Q23470617
relation P688
['Q24086453', 'P688', 'Q24109725'] ['Q24086453', 'P688', 'Q23470617']
ASK WHERE { resource:Q24086453 property:P688 resource:Q24109725 . resource:Q24086453 property:P688 resource:Q23470617 }
guanylate kinase    CT0247 transposase number 2 for insertion sequence ISRM26    SMc03300 guanylate kinase    CT0247
action is_in
entity guanylate kinase    CT0247
action intersection
action find_reverse
entity transposase number 2 for insertion sequence ISRM26    SMc03300
relation encodes
action find_reverse
entity guanylate kinase    CT0247
relation encodes
['guanylate kinase    CT0247', 'encodes', 'transposase number 2 for insertion sequence ISRM26    SMc03300'] ['guanylate kinase    CT0247', 'encodes', 'guanylate kinase    CT0247']
ASK WHERE { resource:guanylate_kinase____CT0247 property:encodes resource:transposase_number_2_for_insertion_sequence_ISRM26____SMc03300 . resource:guanylate_kinase____CT0247 property:encodes resource:guanylate_kinase____CT0247 }
[]
nutrient
SYSTEM
NO and YES respectively
(Q24086453,P688,Q24109725) (Q24086453,P688,Q23470617)
action is_in
entity Q24086453
action intersection
action find_reverse
entity Q24109725
relation P688
action find_reverse
entity Q23470617
relation P688
[ANSWER]
['Q24086453', 'P688', 'Q24109725'] ['Q24086453', 'P688', 'Q23470617']
ASK WHERE { resource:Q24086453 property:P688 resource:Q24109725 . resource:Q24086453 property:P688 resource:Q23470617 }
NO and YES respectively
action is_in
entity guanylate kinase    CT0247
action intersection
action find_reverse
entity transposase number 2 for insertion sequence ISRM26    SMc03300
relation encodes
action find_reverse
entity guanylate kinase    CT0247
relation encodes
['guanylate kinase    CT0247', 'encodes', 'transposase number 2 for insertion sequence ISRM26    SMc03300'] ['guanylate kinase    CT0247', 'encodes', 'guanylate kinase    CT0247']
ASK WHERE { resource:guanylate_kinase____CT0247 property:encodes resource:transposase_number_2_for_insertion_sequence_ISRM26____SMc03300 . resource:guanylate_kinase____CT0247 property:encodes resource:guanylate_kinase____CT0247 }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type
Q23475354
P688
Q863908
USER
How many nucleic acid sequences encodes preprotein translocase subunit SecY    Caur_2389 ?
(c(Q863908),P688,Q23475354)
action count
action filter_type
action find_reverse
entity Q23475354
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q23475354']
SELECT DISTINCT ( COUNT ( ?p ) AS ?b ) WHERE { ?p property:P688 resource:Q23475354 . ?p rdf:type ontology:Q863908 }
preprotein translocase subunit SecY    Caur_2389
action count
action filter_type
action find_reverse
entity preprotein translocase subunit SecY    Caur_2389
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'preprotein translocase subunit SecY    Caur_2389']
SELECT DISTINCT ( COUNT ( ?p ) AS ?b ) WHERE { ?p property:encodes resource:preprotein_translocase_subunit_SecY____Caur_2389 . ?p rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
SYSTEM
1
Q23395180
(c(Q863908),P688,Q23475354)
action count
action filter_type
action find_reverse
entity Q23475354
relation P688
type Q863908
[ANSWER]
[{'concept': 'Q863908'}, 'P688', 'Q23475354']
SELECT DISTINCT ( COUNT ( ?p ) AS ?b ) WHERE { ?p property:P688 resource:Q23475354 . ?p rdf:type ontology:Q863908 }
preprotein translocase subunit SecY    Caur_2389
1
action count
action filter_type
action find_reverse
entity preprotein translocase subunit SecY    Caur_2389
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'preprotein translocase subunit SecY    Caur_2389']
SELECT DISTINCT ( COUNT ( ?p ) AS ?b ) WHERE { ?p property:encodes resource:preprotein_translocase_subunit_SecY____Caur_2389 . ?p rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23051747
P703
Q631147
USER
Which taxon does transcriptional regulator, LysR family    RSP_3124 belong to ?
(Q23051747,P703,c(Q631147))
action filter_type
action find
entity Q23051747
relation P703
type Q631147
['Q23051747', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?z WHERE { ?z rdf:type ontology:Q631147 . resource:Q23051747 property:P703 ?z }
transcriptional regulator, LysR family    RSP_3124
action filter_type
action find
entity transcriptional regulator, LysR family    RSP_3124
relation found in taxon
type infraspecific name
['transcriptional regulator, LysR family    RSP_3124', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?z WHERE { ?z rdf:type ontology:infraspecific_name . resource:transcriptional_regulator,_LysR_family____RSP_3124 property:found_in_taxon ?z }
[]
infraspecific name
Q21102953
SYSTEM
Rhodobacter sphaeroides 2.4.1
Q21102953
(Q23051747,P703,c(Q631147))
action filter_type
action find
entity Q23051747
relation P703
type Q631147
Transcriptional regulator , LysR family RSP_3124 belongs to the [ANSWER]
['Q23051747', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?z WHERE { ?z rdf:type ontology:Q631147 . resource:Q23051747 property:P703 ?z }
Rhodobacter sphaeroides 2.4.1
Transcriptional regulator , LysR family RSP_3124 belongs to the Rhodobacter sphaeroides 2.4.1
Rhodobacter sphaeroides 2.4.1
action filter_type
action find
entity transcriptional regulator, LysR family    RSP_3124
relation found in taxon
type infraspecific name
['transcriptional regulator, LysR family    RSP_3124', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?z WHERE { ?z rdf:type ontology:infraspecific_name . resource:transcriptional_regulator,_LysR_family____RSP_3124 property:found_in_taxon ?z }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q21102953 Q23054565
P703
Q181394
USER
Is short chain dehydrogenase    RSP_3499 a part of the taxon that infraspecific name ?
(Q23054565,P703,Q21102953)
action is_in
entity Q21102953
action find
entity Q23054565
relation P703
['Q23054565', 'P703', 'Q21102953']
ASK WHERE { resource:Q23054565 property:P703 resource:Q21102953 }
Rhodobacter sphaeroides 2.4.1 short chain dehydrogenase    RSP_3499
action is_in
entity Rhodobacter sphaeroides 2.4.1
action find
entity short chain dehydrogenase    RSP_3499
relation found in taxon
['short chain dehydrogenase    RSP_3499', 'found in taxon', 'Rhodobacter sphaeroides 2.4.1']
ASK WHERE { resource:short_chain_dehydrogenase____RSP_3499 property:found_in_taxon resource:Rhodobacter_sphaeroides_2.4.1 }
[]
nutrient
SYSTEM
YES
(Q23054565,P703,Q21102953)
action is_in
entity Q21102953
action find
entity Q23054565
relation P703
[ANSWER]
['Q23054565', 'P703', 'Q21102953']
ASK WHERE { resource:Q23054565 property:P703 resource:Q21102953 }
Yes
action is_in
entity Rhodobacter sphaeroides 2.4.1
action find
entity short chain dehydrogenase    RSP_3499
relation found in taxon
['short chain dehydrogenase    RSP_3499', 'found in taxon', 'Rhodobacter sphaeroides 2.4.1']
ASK WHERE { resource:short_chain_dehydrogenase____RSP_3499 property:found_in_taxon resource:Rhodobacter_sphaeroides_2.4.1 }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, subject is indirect
Q24086453 Q23470617
P688
Q181394
USER
Is guanylate kinase    CT0247 encoded by that nucleic acid sequence ?
(Q24086453,P688,Q23470617)
action is_in
entity Q23470617
action find
entity Q24086453
relation P688
['Q24086453', 'P688', 'Q23470617']
ASK WHERE { resource:Q24086453 property:P688 resource:Q23470617 }
guanylate kinase    CT0247 guanylate kinase    CT0247
action is_in
entity guanylate kinase    CT0247
action find
entity guanylate kinase    CT0247
relation encodes
['guanylate kinase    CT0247', 'encodes', 'guanylate kinase    CT0247']
ASK WHERE { resource:guanylate_kinase____CT0247 property:encodes resource:guanylate_kinase____CT0247 }
[]
nutrient
SYSTEM
YES
(Q24086453,P688,Q23470617)
action is_in
entity Q23470617
action find
entity Q24086453
relation P688
[ANSWER]
['Q24086453', 'P688', 'Q23470617']
ASK WHERE { resource:Q24086453 property:P688 resource:Q23470617 }
Yes
action is_in
entity guanylate kinase    CT0247
action find
entity guanylate kinase    CT0247
relation encodes
['guanylate kinase    CT0247', 'encodes', 'guanylate kinase    CT0247']
ASK WHERE { resource:guanylate_kinase____CT0247 property:encodes resource:guanylate_kinase____CT0247 }
[]
Simple Question (Ellipsis)
Incomplete|object parent is changed, subject and predicate remain same
Q24086453
Q181394
USER
And which nutrient?
(Q24086453,P688,c(Q181394))
action filter_type
action find
entity Q24086453
relation P688
type Q181394
['Q24086453', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?g WHERE { resource:Q24086453 property:P688 ?g . ?g rdf:type ontology:Q181394 }
guanylate kinase    CT0247
action filter_type
action find
entity guanylate kinase    CT0247
relation encodes
type nutrient
['guanylate kinase    CT0247', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?g WHERE { resource:guanylate_kinase____CT0247 property:encodes ?g . ?g rdf:type ontology:nutrient }
[]
nutrient
Q23470617
SYSTEM
guanylate kinase    CT0247
Q23470617
(Q24086453,P688,c(Q181394))
action filter_type
action find
entity Q24086453
relation P688
type Q181394
[ANSWER]
['Q24086453', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?g WHERE { resource:Q24086453 property:P688 ?g . ?g rdf:type ontology:Q181394 }
guanylate kinase    CT0247
guanylate kinase    CT0247
action filter_type
action find
entity guanylate kinase    CT0247
relation encodes
type nutrient
['guanylate kinase    CT0247', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?g WHERE { resource:guanylate_kinase____CT0247 property:encodes ?g . ?g rdf:type ontology:nutrient }
[]