Simple Question (Direct)
Simple Question
Q23510343
P682
Q2996394
USER
What is the biological process that stage 0 sporulation protein A    BC4170 is involved in ?
(Q23510343,P682,c(Q2996394))
action filter_type
action find
entity Q23510343
relation P682
type Q2996394
['Q23510343', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?r WHERE { resource:Q23510343 property:P682 ?r . ?r rdf:type ontology:Q2996394 }
stage 0 sporulation protein A    BC4170
action filter_type
action find
entity stage 0 sporulation protein A    BC4170
relation biological process
type biological process
['stage 0 sporulation protein A    BC4170', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?r WHERE { resource:stage_0_sporulation_protein_A____BC4170 property:biological_process ?r . ?r rdf:type ontology:biological_process }
[]
biological process
Q22272219
SYSTEM
detection of stimulus
Q22272219
(Q23510343,P682,c(Q2996394))
action filter_type
action find
entity Q23510343
relation P682
type Q2996394
The biological process that stage 0 sporulation protein A BC4170 is involved in is the [ANSWER]
['Q23510343', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?r WHERE { resource:Q23510343 property:P682 ?r . ?r rdf:type ontology:Q2996394 }
detection of stimulus
The biological process that stage 0 sporulation protein A BC4170 is involved in is the detection of stimulus
detection of stimulus
action filter_type
action find
entity stage 0 sporulation protein A    BC4170
relation biological process
type biological process
['stage 0 sporulation protein A    BC4170', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?r WHERE { resource:stage_0_sporulation_protein_A____BC4170 property:biological_process ?r . ?r rdf:type ontology:biological_process }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23510343
P681
Q15989253
USER
What is a component of stage 0 sporulation protein A    BC4170 ?
(Q23510343,P681,c(Q15989253))
action filter_type
action find
entity Q23510343
relation P681
type Q15989253
['Q23510343', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?y WHERE { resource:Q23510343 property:P681 ?y . ?y rdf:type ontology:Q15989253 }
stage 0 sporulation protein A    BC4170
action filter_type
action find
entity stage 0 sporulation protein A    BC4170
relation cell component
type part
['stage 0 sporulation protein A    BC4170', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?y WHERE { resource:stage_0_sporulation_protein_A____BC4170 property:cell_component ?y . ?y rdf:type ontology:part }
[]
part
Q79899
SYSTEM
cytoplasm
Q79899
(Q23510343,P681,c(Q15989253))
action filter_type
action find
entity Q23510343
relation P681
type Q15989253
A component of stage 0 sporulation protein A BC4170 is a [ANSWER]
['Q23510343', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?y WHERE { resource:Q23510343 property:P681 ?y . ?y rdf:type ontology:Q15989253 }
cytoplasm
A component of stage 0 sporulation protein A BC4170 is a cytoplasm
cytoplasm
action filter_type
action find
entity stage 0 sporulation protein A    BC4170
relation cell component
type part
['stage 0 sporulation protein A    BC4170', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?y WHERE { resource:stage_0_sporulation_protein_A____BC4170 property:cell_component ?y . ?y rdf:type ontology:part }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23510343
P703
Q631147
USER
What is the taxon to which that nutrient belongs to ?
(Q79899,P703,c(Q631147))
action filter_type
action find
entity Q23510343
relation P703
type Q631147
['Q79899', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?p WHERE { resource:Q23510343 property:P703 ?p . ?p rdf:type ontology:Q631147 }
stage 0 sporulation protein A    BC4170
action filter_type
action find
entity stage 0 sporulation protein A    BC4170
relation found in taxon
type infraspecific name
['cytoplasm', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?p WHERE { resource:stage_0_sporulation_protein_A____BC4170 property:found_in_taxon ?p . ?p rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102970
SYSTEM
Bacillus cereus ATCC 14579
Q21102970
(Q79899,P703,c(Q631147))
action filter_type
action find
entity Q23510343
relation P703
type Q631147
[ANSWER]
['Q79899', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?p WHERE { resource:Q23510343 property:P703 ?p . ?p rdf:type ontology:Q631147 }
Bacillus cereus ATCC 14579
Bacillus cereus ATCC 14579
Bacillus cereus ATCC 14579
action filter_type
action find
entity stage 0 sporulation protein A    BC4170
relation found in taxon
type infraspecific name
['cytoplasm', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?p WHERE { resource:stage_0_sporulation_protein_A____BC4170 property:found_in_taxon ?p . ?p rdf:type ontology:infraspecific_name }
[]
Logical Reasoning (All)
Logical|Intersection|Single_Relation|Incomplete
Q23510652 Q23510343
P703
Q631147
USER
And also ribosomal-protein-alanine acetyltransferase    BC2847
AND((Q23510343,P703,c(Q631147)), (Q23510652,P703,c(Q631147)))
action filter_type
action intersection
action find
entity Q23510343
relation P703
action find
entity Q23510652
relation P703
type Q631147
{'AND': [['Q23510343', 'P703', {'concept': 'Q631147'}], ['Q23510652', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?v WHERE { resource:Q23510343 property:P703 ?v . resource:Q23510652 property:P703 ?v . ?v rdf:type ontology:Q631147 }
ribosomal-protein-alanine acetyltransferase    BC2847 stage 0 sporulation protein A    BC4170
action filter_type
action intersection
action find
entity stage 0 sporulation protein A    BC4170
relation found in taxon
action find
entity ribosomal-protein-alanine acetyltransferase    BC2847
relation found in taxon
type infraspecific name
{'AND': [['stage 0 sporulation protein A    BC4170', 'found in taxon', {'concept': 'infraspecific name'}], ['ribosomal-protein-alanine acetyltransferase    BC2847', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?v WHERE { resource:stage_0_sporulation_protein_A____BC4170 property:found_in_taxon ?v . resource:ribosomal-protein-alanine_acetyltransferase____BC2847 property:found_in_taxon ?v . ?v rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102970
SYSTEM
Bacillus cereus ATCC 14579
Q21102970
AND((Q23510343,P703,c(Q631147)), (Q23510652,P703,c(Q631147)))
action filter_type
action intersection
action find
entity Q23510343
relation P703
action find
entity Q23510652
relation P703
type Q631147
[ANSWER]
{'AND': [['Q23510343', 'P703', {'concept': 'Q631147'}], ['Q23510652', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?v WHERE { resource:Q23510343 property:P703 ?v . resource:Q23510652 property:P703 ?v . ?v rdf:type ontology:Q631147 }
Bacillus cereus ATCC 14579
Bacillus cereus ATCC 14579
action filter_type
action intersection
action find
entity stage 0 sporulation protein A    BC4170
relation found in taxon
action find
entity ribosomal-protein-alanine acetyltransferase    BC2847
relation found in taxon
type infraspecific name
{'AND': [['stage 0 sporulation protein A    BC4170', 'found in taxon', {'concept': 'infraspecific name'}], ['ribosomal-protein-alanine acetyltransferase    BC2847', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?v WHERE { resource:stage_0_sporulation_protein_A____BC4170 property:found_in_taxon ?v . resource:ribosomal-protein-alanine_acetyltransferase____BC2847 property:found_in_taxon ?v . ?v rdf:type ontology:infraspecific_name }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23510652
P702
Q863908
USER
What is the gene that encodes ribosomal-protein-alanine acetyltransferase    BC2847 ?
(Q23510652,P702,c(Q863908))
action filter_type
action find
entity Q23510652
relation P702
type Q863908
['Q23510652', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?h WHERE { ?h rdf:type ontology:Q863908 . resource:Q23510652 property:P702 ?h }
ribosomal-protein-alanine acetyltransferase    BC2847
action filter_type
action find
entity ribosomal-protein-alanine acetyltransferase    BC2847
relation encoded by
type nucleic acid sequence
['ribosomal-protein-alanine acetyltransferase    BC2847', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?h WHERE { ?h rdf:type ontology:nucleic_acid_sequence . resource:ribosomal-protein-alanine_acetyltransferase____BC2847 property:encoded_by ?h }
[]
nucleic acid sequence
Q23192214
SYSTEM
ribosomal-protein-alanine acetyltransferase    BC2847
Q23192214
(Q23510652,P702,c(Q863908))
action filter_type
action find
entity Q23510652
relation P702
type Q863908
The gene that encodes ribosomal-protein-alanine acetyltransferase BC2847 is not ribosomal-protein-alanine acetyltransferase BC2847
['Q23510652', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?h WHERE { ?h rdf:type ontology:Q863908 . resource:Q23510652 property:P702 ?h }
ribosomal-protein-alanine acetyltransferase    BC2847
The gene that encodes ribosomal-protein-alanine acetyltransferase BC2847 is not ribosomal-protein-alanine acetyltransferase BC2847
ribosomal-protein-alanine acetyltransferase    BC2847
action filter_type
action find
entity ribosomal-protein-alanine acetyltransferase    BC2847
relation encoded by
type nucleic acid sequence
['ribosomal-protein-alanine acetyltransferase    BC2847', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?h WHERE { ?h rdf:type ontology:nucleic_acid_sequence . resource:ribosomal-protein-alanine_acetyltransferase____BC2847 property:encoded_by ?h }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q23066243
Q863908
USER
And also tell me about metal (Ni/Fe) hydrogenase small subunit    LA_4278?
(Q23066243,P702,c(Q863908))
action filter_type
action find
entity Q23066243
relation P702
type Q863908
['Q23066243', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:Q863908 . resource:Q23066243 property:P702 ?b }
metal (Ni/Fe) hydrogenase small subunit    LA_4278
action filter_type
action find
entity metal (Ni/Fe) hydrogenase small subunit    LA_4278
relation encoded by
type nucleic acid sequence
['metal (Ni/Fe) hydrogenase small subunit    LA_4278', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:nucleic_acid_sequence . resource:metal_(Ni/Fe)_hydrogenase_small_subunit____LA_4278 property:encoded_by ?b }
[]
nucleic acid sequence
Q23026984
SYSTEM
metal (Ni/Fe) hydrogenase small subunit    LA_4278
Q23026984
(Q23066243,P702,c(Q863908))
action filter_type
action find
entity Q23066243
relation P702
type Q863908
[ANSWER]
['Q23066243', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:Q863908 . resource:Q23066243 property:P702 ?b }
metal (Ni/Fe) hydrogenase small subunit    LA_4278
metal (Ni/Fe) hydrogenase small subunit    LA_4278
action filter_type
action find
entity metal (Ni/Fe) hydrogenase small subunit    LA_4278
relation encoded by
type nucleic acid sequence
['metal (Ni/Fe) hydrogenase small subunit    LA_4278', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:nucleic_acid_sequence . resource:metal_(Ni/Fe)_hydrogenase_small_subunit____LA_4278 property:encoded_by ?b }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23165009 Q23192214
P688
Q181394
USER
Which nutrients are encoded by ribosomal-protein-alanine acetyltransferase    BC2847 or hypothetical protein    VP2142 ?
OR((Q23192214,P688,c(Q181394)), (Q23165009,P688,c(Q181394)))
action filter_type
action union
action find
entity Q23192214
relation P688
action find
entity Q23165009
relation P688
type Q181394
{'OR': [['Q23192214', 'P688', {'concept': 'Q181394'}], ['Q23165009', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:Q181394 . { { resource:Q23192214 property:P688 ?s } UNION { resource:Q23165009 property:P688 ?s } } }
hypothetical protein    VP2142 ribosomal-protein-alanine acetyltransferase    BC2847
action filter_type
action union
action find
entity ribosomal-protein-alanine acetyltransferase    BC2847
relation encodes
action find
entity hypothetical protein    VP2142
relation encodes
type nutrient
{'OR': [['ribosomal-protein-alanine acetyltransferase    BC2847', 'encodes', {'concept': 'nutrient'}], ['hypothetical protein    VP2142', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:nutrient . { { resource:ribosomal-protein-alanine_acetyltransferase____BC2847 property:encodes ?s } UNION { resource:hypothetical_protein____VP2142 property:encodes ?s } } }
[]
nutrient
Q23444041 Q23510652
SYSTEM
hypothetical protein    VP2142, ribosomal-protein-alanine acetyltransferase    BC2847
Q23444041 Q23510652
OR((Q23192214,P688,c(Q181394)), (Q23165009,P688,c(Q181394)))
action filter_type
action union
action find
entity Q23192214
relation P688
action find
entity Q23165009
relation P688
type Q181394
[ANSWERS]
{'OR': [['Q23192214', 'P688', {'concept': 'Q181394'}], ['Q23165009', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:Q181394 . { { resource:Q23192214 property:P688 ?s } UNION { resource:Q23165009 property:P688 ?s } } }
hypothetical protein    VP2142 ribosomal-protein-alanine acetyltransferase    BC2847
Hypothetical protein VP2142 and ribosomal-protein-alanine acetyltransferase BC2847 are encoded by ribosomal-protein-alanine acetyltransferase BC2847 or hypothetical protein VP2142
hypothetical protein    VP2142 ribosomal-protein-alanine acetyltransferase    BC2847
action filter_type
action union
action find
entity ribosomal-protein-alanine acetyltransferase    BC2847
relation encodes
action find
entity hypothetical protein    VP2142
relation encodes
type nutrient
{'OR': [['ribosomal-protein-alanine acetyltransferase    BC2847', 'encodes', {'concept': 'nutrient'}], ['hypothetical protein    VP2142', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:nutrient . { { resource:ribosomal-protein-alanine_acetyltransferase____BC2847 property:encodes ?s } UNION { resource:hypothetical_protein____VP2142 property:encodes ?s } } }
[]