Simple Question (Direct)
Simple Question
Q23495196
P680
Q44424
USER
Which chemical bond represents molecular function of glycosyl transferase    spr0982 ?
(Q23495196,P680,c(Q44424))
action filter_type
action find
entity Q23495196
relation P680
type Q44424
['Q23495196', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?x WHERE { resource:Q23495196 property:P680 ?x . ?x rdf:type ontology:Q44424 }
glycosyl transferase    spr0982
action filter_type
action find
entity glycosyl transferase    spr0982
relation molecular function
type chemical bond
['glycosyl transferase    spr0982', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?x WHERE { resource:glycosyl_transferase____spr0982 property:molecular_function ?x . ?x rdf:type ontology:chemical_bond }
[]
chemical bond
Q14860850
SYSTEM
magnesium ion binding
Q14860850
(Q23495196,P680,c(Q44424))
action filter_type
action find
entity Q23495196
relation P680
type Q44424
[ANSWER] represents molecular function of glycosyl transferase spr0982
['Q23495196', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?x WHERE { resource:Q23495196 property:P680 ?x . ?x rdf:type ontology:Q44424 }
magnesium ion binding
Magnesium ion binding represents molecular function of glycosyl transferase spr0982
magnesium ion binding
action filter_type
action find
entity glycosyl transferase    spr0982
relation molecular function
type chemical bond
['glycosyl transferase    spr0982', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?x WHERE { resource:glycosyl_transferase____spr0982 property:molecular_function ?x . ?x rdf:type ontology:chemical_bond }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23495196
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(c(Q863908),P688,Q14860850)
action filter_type
action find_reverse
entity Q23495196
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q14860850']
SELECT DISTINCT ?j WHERE { ?j property:P688 resource:Q23495196 . ?j rdf:type ontology:Q863908 }
glycosyl transferase    spr0982
action filter_type
action find_reverse
entity glycosyl transferase    spr0982
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'magnesium ion binding']
SELECT DISTINCT ?j WHERE { ?j property:encodes resource:glycosyl_transferase____spr0982 . ?j rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23229746
SYSTEM
glycosyl transferase    spr0982
Q23229746
(c(Q863908),P688,Q14860850)
action filter_type
action find_reverse
entity Q23495196
relation P688
type Q863908
Glycosyl transferase spr0982 encodes that nutrient
[{'concept': 'Q863908'}, 'P688', 'Q14860850']
SELECT DISTINCT ?j WHERE { ?j property:P688 resource:Q23495196 . ?j rdf:type ontology:Q863908 }
glycosyl transferase    spr0982
Glycosyl transferase spr0982 encodes that nutrient
glycosyl transferase    spr0982
action filter_type
action find_reverse
entity glycosyl transferase    spr0982
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'magnesium ion binding']
SELECT DISTINCT ?j WHERE { ?j property:encodes resource:glycosyl_transferase____spr0982 . ?j rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q23229746 Q23495196
P688
Q181394
USER
Is glycosyl transferase    spr0982 encoded by glycosyl transferase    spr0982 ?
(Q23229746,P688,Q23495196)
action is_in
entity Q23495196
action find
entity Q23229746
relation P688
['Q23229746', 'P688', 'Q23495196']
ASK WHERE { resource:Q23229746 property:P688 resource:Q23495196 }
glycosyl transferase    spr0982 glycosyl transferase    spr0982
action is_in
entity glycosyl transferase    spr0982
action find
entity glycosyl transferase    spr0982
relation encodes
['glycosyl transferase    spr0982', 'encodes', 'glycosyl transferase    spr0982']
ASK WHERE { resource:glycosyl_transferase____spr0982 property:encodes resource:glycosyl_transferase____spr0982 }
[]
nutrient
SYSTEM
YES
(Q23229746,P688,Q23495196)
action is_in
entity Q23495196
action find
entity Q23229746
relation P688
[ANSWER]
['Q23229746', 'P688', 'Q23495196']
ASK WHERE { resource:Q23229746 property:P688 resource:Q23495196 }
Yes
action is_in
entity glycosyl transferase    spr0982
action find
entity glycosyl transferase    spr0982
relation encodes
['glycosyl transferase    spr0982', 'encodes', 'glycosyl transferase    spr0982']
ASK WHERE { resource:glycosyl_transferase____spr0982 property:encodes resource:glycosyl_transferase____spr0982 }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23229746
P703
Q631147
USER
Where is that nucleic acid sequence found ?
action filter_type
action find
entity Q23229746
relation P703
type Q631147
SELECT DISTINCT ?q WHERE { ?q rdf:type ontology:Q631147 . resource:Q23229746 property:P703 ?q }
glycosyl transferase    spr0982
action filter_type
action find
entity glycosyl transferase    spr0982
relation found in taxon
type infraspecific name
SELECT DISTINCT ?q WHERE { ?q rdf:type ontology:infraspecific_name . resource:glycosyl_transferase____spr0982 property:found_in_taxon ?q }
[]
infraspecific name
Q21102963
SYSTEM
Streptococcus pneumoniae R6
Q21102963
action filter_type
action find
entity Q23229746
relation P703
type Q631147
That nucleic acid sequence is found in [ANSWER]
SELECT DISTINCT ?q WHERE { ?q rdf:type ontology:Q631147 . resource:Q23229746 property:P703 ?q }
Streptococcus pneumoniae R6
That nucleic acid sequence is found in Streptococcus pneumoniae R6
Streptococcus pneumoniae R6
action filter_type
action find
entity glycosyl transferase    spr0982
relation found in taxon
type infraspecific name
SELECT DISTINCT ?q WHERE { ?q rdf:type ontology:infraspecific_name . resource:glycosyl_transferase____spr0982 property:found_in_taxon ?q }
[]
Logical Reasoning (All)
Logical|Intersection|Multiple_Relation
Q14762260 Q23229746
P682 P702
Q181394
USER
Which nutrients do glycosyl transferase    spr0982 encode and are involved in carbohydrate metabolic process ?
AND((c(Q181394),P702,Q23229746), (c(Q181394),P682,Q14762260))
action filter_type
action intersection
action find_reverse
entity Q23229746
relation P702
action find_reverse
entity Q14762260
relation P682
type Q181394
{'AND': [[{'concept': 'Q181394'}, 'P702', 'Q23229746'], [{'concept': 'Q181394'}, 'P682', 'Q14762260']]}
SELECT DISTINCT ?a WHERE { ?a property:P682 resource:Q14762260 . ?a property:P702 resource:Q23229746 . ?a rdf:type ontology:Q181394 }
carbohydrate metabolic process glycosyl transferase    spr0982
action filter_type
action intersection
action find_reverse
entity glycosyl transferase    spr0982
relation encoded by
action find_reverse
entity carbohydrate metabolic process
relation biological process
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'encoded by', 'glycosyl transferase    spr0982'], [{'concept': 'nutrient'}, 'biological process', 'carbohydrate metabolic process']]}
SELECT DISTINCT ?a WHERE { ?a property:biological_process resource:carbohydrate_metabolic_process . ?a property:encoded_by resource:glycosyl_transferase____spr0982 . ?a rdf:type ontology:nutrient }
[]
nutrient
Q23495196
SYSTEM
glycosyl transferase    spr0982
Q23495196
AND((c(Q181394),P702,Q23229746), (c(Q181394),P682,Q14762260))
action filter_type
action intersection
action find_reverse
entity Q23229746
relation P702
action find_reverse
entity Q14762260
relation P682
type Q181394
Glycosyl transferase spr0982 glycosyl transferase spr0982 encode and are involved in carbohydrate metabolic process
{'AND': [[{'concept': 'Q181394'}, 'P702', 'Q23229746'], [{'concept': 'Q181394'}, 'P682', 'Q14762260']]}
SELECT DISTINCT ?a WHERE { ?a property:P682 resource:Q14762260 . ?a property:P702 resource:Q23229746 . ?a rdf:type ontology:Q181394 }
glycosyl transferase    spr0982
Glycosyl transferase spr0982 glycosyl transferase spr0982 encode and are involved in carbohydrate metabolic process
glycosyl transferase    spr0982
action filter_type
action intersection
action find_reverse
entity glycosyl transferase    spr0982
relation encoded by
action find_reverse
entity carbohydrate metabolic process
relation biological process
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'encoded by', 'glycosyl transferase    spr0982'], [{'concept': 'nutrient'}, 'biological process', 'carbohydrate metabolic process']]}
SELECT DISTINCT ?a WHERE { ?a property:biological_process resource:carbohydrate_metabolic_process . ?a property:encoded_by resource:glycosyl_transferase____spr0982 . ?a rdf:type ontology:nutrient }
[]
Quantitative Reasoning (All)
Quantitative|Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q79529 Q181394 Q181394
USER
Which nutrients interacts with exactly 7 chemical substances or nutrients ?
(c(Q181394),P129,c(Q79529)|c(Q181394))
action equal
action union
action find_tuple_counts
relation P129
type Q181394
type Q79529
action find_tuple_counts
relation P129
type Q181394
type Q181394
value 7
[{'concept': 'Q181394'}, 'P129', [{'concept': 'Q79529'}, {'concept': 'Q181394'}]]
SELECT DISTINCT ?s WHERE { { SELECT DISTINCT ( COUNT ( ?c ) AS ?w ) ?s WHERE { ?c rdf:type ?n . VALUES ( ?n ) { ( ontology:Q79529 ) ( ontology:Q181394 ) } } GROUP BY ?s } . FILTER ( ?w = 7 ) }
action equal
action union
action find_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
action find_tuple_counts
relation physically interacts with
type nutrient
type nutrient
value 7
[{'concept': 'nutrient'}, 'physically interacts with', [{'concept': 'chemical substance'}, {'concept': 'nutrient'}]]
SELECT DISTINCT ?s WHERE { { SELECT DISTINCT ( COUNT ( ?c ) AS ?w ) ?s WHERE { ?c rdf:type ?n . VALUES ( ?n ) { ( ontology:chemical_substance ) ( ontology:nutrient ) } } GROUP BY ?s } . FILTER ( ?w = 7 ) }
[]
chemical substance nutrient nutrient
Q21110867 Q5773155 Q4734884
SYSTEM
D(1A) dopamine receptor, Histone deacetylase 2, Alpha-1A adrenergic receptor
Q21110867 Q4734884 Q5773155 Q4859538 Q4734891 Q21132652 Q21201294 Q21983336
(c(Q181394),P129,c(Q79529)|c(Q181394))
action equal
action union
action find_tuple_counts
relation P129
type Q181394
type Q79529
action find_tuple_counts
relation P129
type Q181394
type Q181394
value 7
[ANSWERS] interact with exactly 7 chemical substances or nutrients
[{'concept': 'Q181394'}, 'P129', [{'concept': 'Q79529'}, {'concept': 'Q181394'}]]
SELECT DISTINCT ?s WHERE { { SELECT DISTINCT ( COUNT ( ?c ) AS ?w ) ?s WHERE { ?c rdf:type ?n . VALUES ( ?n ) { ( ontology:Q79529 ) ( ontology:Q181394 ) } } GROUP BY ?s } . FILTER ( ?w = 7 ) }
D(1A) dopamine receptor Alpha-1A adrenergic receptor Histone deacetylase 2 Metabotropic glutamate receptor 2 Alpha-2C adrenergic receptor Glucose-dependent insulinotropic receptor Cannabinoid receptor 1 Histamine H3 receptor
D(1A) dopamine receptor, Histone deacetylase 2 and Alpha-1A adrenergic receptor interact with exactly 7 chemical substances or nutrients
D(1A) dopamine receptor Histone deacetylase 2 Alpha-1A adrenergic receptor
action equal
action union
action find_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
action find_tuple_counts
relation physically interacts with
type nutrient
type nutrient
value 7
[{'concept': 'nutrient'}, 'physically interacts with', [{'concept': 'chemical substance'}, {'concept': 'nutrient'}]]
SELECT DISTINCT ?s WHERE { { SELECT DISTINCT ( COUNT ( ?c ) AS ?w ) ?s WHERE { ?c rdf:type ?n . VALUES ( ?n ) { ( ontology:chemical_substance ) ( ontology:nutrient ) } } GROUP BY ?s } . FILTER ( ?w = 7 ) }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Logical operators
Q21110867
P129
Q11173 Q8386
USER
How many chemical compounds or drugs can interact with D(1A) dopamine receptor ?
(c(Q11173),P129,Q21110867) (c(Q8386),P129,Q21110867)
action count
action union
action filter_type
action find_reverse
entity Q21110867
relation P129
type Q11173
action filter_type
action find_reverse
entity Q21110867
relation P129
type Q8386
[{'concept': 'Q11173'}, 'P129', 'Q21110867'] [{'concept': 'Q8386'}, 'P129', 'Q21110867']
SELECT DISTINCT ( COUNT ( ?b ) AS ?m ) WHERE { VALUES ( ?v ) { ( ontology:Q11173 ) ( ontology:Q8386 ) } . ?b rdf:type ?v }
D(1A) dopamine receptor
action count
action union
action filter_type
action find_reverse
entity D(1A) dopamine receptor
relation physically interacts with
type chemical compound
action filter_type
action find_reverse
entity D(1A) dopamine receptor
relation physically interacts with
type drug
[{'concept': 'chemical compound'}, 'physically interacts with', 'D(1A) dopamine receptor'] [{'concept': 'drug'}, 'physically interacts with', 'D(1A) dopamine receptor']
SELECT DISTINCT ( COUNT ( ?b ) AS ?m ) WHERE { VALUES ( ?v ) { ( ontology:chemical_compound ) ( ontology:drug ) } . ?b rdf:type ?v }
[]
chemical compound drug
SYSTEM
17
Q58376 Q424446 Q58375 Q411985 Q413581 Q423308 Q3077150 Q170304 Q2359690 Q221361 Q251347 Q420350 Q415752 Q2357007 Q407972 Q6821618 Q269111
(c(Q11173),P129,Q21110867) (c(Q8386),P129,Q21110867)
action count
action union
action filter_type
action find_reverse
entity Q21110867
relation P129
type Q11173
action filter_type
action find_reverse
entity Q21110867
relation P129
type Q8386
[ANSWER]
[{'concept': 'Q11173'}, 'P129', 'Q21110867'] [{'concept': 'Q8386'}, 'P129', 'Q21110867']
SELECT DISTINCT ( COUNT ( ?b ) AS ?m ) WHERE { VALUES ( ?v ) { ( ontology:Q11173 ) ( ontology:Q8386 ) } . ?b rdf:type ?v }
fluphenazine lisuride thioridazine rotigotine bromocriptine cabergoline spiperone dopamine prochlorperazine clozapine haloperidol flupentixol pergolide fenoldopam chlorpromazine mesoridazine apomorphine
17
action count
action union
action filter_type
action find_reverse
entity D(1A) dopamine receptor
relation physically interacts with
type chemical compound
action filter_type
action find_reverse
entity D(1A) dopamine receptor
relation physically interacts with
type drug
[{'concept': 'chemical compound'}, 'physically interacts with', 'D(1A) dopamine receptor'] [{'concept': 'drug'}, 'physically interacts with', 'D(1A) dopamine receptor']
SELECT DISTINCT ( COUNT ( ?b ) AS ?m ) WHERE { VALUES ( ?v ) { ( ontology:chemical_compound ) ( ontology:drug ) } . ?b rdf:type ?v }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21110867
P681
Q5058355
USER
Which are the cellular components that are a component of that nutrient ?
action filter_type
action find
entity Q21110867
relation P681
type Q5058355
SELECT DISTINCT ?w WHERE { resource:Q21110867 property:P681 ?w . ?w rdf:type ontology:Q5058355 }
D(1A) dopamine receptor
action filter_type
action find
entity D(1A) dopamine receptor
relation cell component
type cellular component
SELECT DISTINCT ?w WHERE { resource:D(1A)_dopamine_receptor property:cell_component ?w . ?w rdf:type ontology:cellular_component }
[]
cellular component
Q29548 Q79927 Q14329032
SYSTEM
plasma membrane, endoplasmic reticulum, endoplasmic reticulum membrane
Q29548 Q79927 Q14329032 Q899827
action filter_type
action find
entity Q21110867
relation P681
type Q5058355
The cellular components that are a component of that nutrient are the [ANSWERS]
SELECT DISTINCT ?w WHERE { resource:Q21110867 property:P681 ?w . ?w rdf:type ontology:Q5058355 }
plasma membrane endoplasmic reticulum endoplasmic reticulum membrane endomembrane system
The cellular components that are a component of that nutrient are the plasma membrane, endoplasmic reticulum and endoplasmic reticulum membrane
plasma membrane endoplasmic reticulum endoplasmic reticulum membrane
action filter_type
action find
entity D(1A) dopamine receptor
relation cell component
type cellular component
SELECT DISTINCT ?w WHERE { resource:D(1A)_dopamine_receptor property:cell_component ?w . ?w rdf:type ontology:cellular_component }
[]
Verification (Boolean) (All)
Verification|one entity, multiple entities (as object) referred indirectly
Q21991618
P681
Q181394
USER
Do Seizure 6-like protein 2 have those ones as cell component ?
(Q21991618,P681,Q29548) (Q21991618,P681,Q79927) (Q21991618,P681,Q14329032)
action is_in
entity prev_answer
action find
entity Q21991618
relation P681
['Q21991618', 'P681', 'Q29548'] ['Q21991618', 'P681', 'Q79927'] ['Q21991618', 'P681', 'Q14329032']
ASK WHERE { resource:Q21991618 property:P681 ?f . VALUES ( ?f ) { ( resource:Q29548 ) ( resource:Q79927 ) ( resource:Q14329032 ) } }
Seizure 6-like protein 2
action is_in
entity prev_answer
action find
entity Seizure 6-like protein 2
relation cell component
['Seizure 6-like protein 2', 'cell component', 'plasma membrane'] ['Seizure 6-like protein 2', 'cell component', 'endoplasmic reticulum'] ['Seizure 6-like protein 2', 'cell component', 'endoplasmic reticulum membrane']
ASK WHERE { resource:Seizure_6-like_protein_2 property:cell_component ?f . VALUES ( ?f ) { ( resource:plasma_membrane ) ( resource:endoplasmic_reticulum ) ( resource:endoplasmic_reticulum_membrane ) } }
[]
nutrient
SYSTEM
YES
(Q21991618,P681,Q29548) (Q21991618,P681,Q79927) (Q21991618,P681,Q14329032)
action is_in
entity prev_answer
action find
entity Q21991618
relation P681
[ANSWER]
['Q21991618', 'P681', 'Q29548'] ['Q21991618', 'P681', 'Q79927'] ['Q21991618', 'P681', 'Q14329032']
ASK WHERE { resource:Q21991618 property:P681 ?f . VALUES ( ?f ) { ( resource:Q29548 ) ( resource:Q79927 ) ( resource:Q14329032 ) } }
Yes
action is_in
entity prev_answer
action find
entity Seizure 6-like protein 2
relation cell component
['Seizure 6-like protein 2', 'cell component', 'plasma membrane'] ['Seizure 6-like protein 2', 'cell component', 'endoplasmic reticulum'] ['Seizure 6-like protein 2', 'cell component', 'endoplasmic reticulum membrane']
ASK WHERE { resource:Seizure_6-like_protein_2 property:cell_component ?f . VALUES ( ?f ) { ( resource:plasma_membrane ) ( resource:endoplasmic_reticulum ) ( resource:endoplasmic_reticulum_membrane ) } }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q181394 Q79529 Q181394
USER
How many nutrients can communicate with approximately 30 nutrients and chemical substances ?
(c(Q181394),P129,c(Q181394)|c(Q79529))
action count
action approx
action union
action find_tuple_counts
relation P129
type Q181394
type Q181394
action find_tuple_counts
relation P129
type Q181394
type Q79529
value 30
[{'concept': 'Q181394'}, 'P129', [{'concept': 'Q181394'}, {'concept': 'Q79529'}]]
SELECT DISTINCT ( COUNT ( ?i ) AS ?n ) WHERE { { SELECT DISTINCT ( COUNT ( ?t ) AS ?b ) ?i WHERE { { ?i property:P129 ?t . ?i rdf:type ontology:Q181394 . ?t rdf:type ontology:Q181394 } UNION { ?i property:P129 ?t . ?i rdf:type ontology:Q181394 . ?t rdf:type ontology:Q79529 } } GROUP BY ?i } . FILTER ( ?b = 30 ) }
action count
action approx
action union
action find_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
value 30
[{'concept': 'nutrient'}, 'physically interacts with', [{'concept': 'nutrient'}, {'concept': 'chemical substance'}]]
SELECT DISTINCT ( COUNT ( ?i ) AS ?n ) WHERE { { SELECT DISTINCT ( COUNT ( ?t ) AS ?b ) ?i WHERE { { ?i property:physically_interacts_with ?t . ?i rdf:type ontology:nutrient . ?t rdf:type ontology:nutrient } UNION { ?i property:physically_interacts_with ?t . ?i rdf:type ontology:nutrient . ?t rdf:type ontology:chemical_substance } } GROUP BY ?i } . FILTER ( ?b = 30 ) }
[]
nutrient chemical substance nutrient
SYSTEM
3
Q288797 Q21115046 Q21109363
(c(Q181394),P129,c(Q181394)|c(Q79529))
action count
action approx
action union
action find_tuple_counts
relation P129
type Q181394
type Q181394
action find_tuple_counts
relation P129
type Q181394
type Q79529
value 30
[ANSWER]
[{'concept': 'Q181394'}, 'P129', [{'concept': 'Q181394'}, {'concept': 'Q79529'}]]
SELECT DISTINCT ( COUNT ( ?i ) AS ?n ) WHERE { { SELECT DISTINCT ( COUNT ( ?t ) AS ?b ) ?i WHERE { { ?i property:P129 ?t . ?i rdf:type ontology:Q181394 . ?t rdf:type ontology:Q181394 } UNION { ?i property:P129 ?t . ?i rdf:type ontology:Q181394 . ?t rdf:type ontology:Q79529 } } GROUP BY ?i } . FILTER ( ?b = 30 ) }
5-hydroxytryptamine receptor 1B 5-hydroxytryptamine receptor 1D 5-hydroxytryptamine receptor 6
3
action count
action approx
action union
action find_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
value 30
[{'concept': 'nutrient'}, 'physically interacts with', [{'concept': 'nutrient'}, {'concept': 'chemical substance'}]]
SELECT DISTINCT ( COUNT ( ?i ) AS ?n ) WHERE { { SELECT DISTINCT ( COUNT ( ?t ) AS ?b ) ?i WHERE { { ?i property:physically_interacts_with ?t . ?i rdf:type ontology:nutrient . ?t rdf:type ontology:nutrient } UNION { ?i property:physically_interacts_with ?t . ?i rdf:type ontology:nutrient . ?t rdf:type ontology:chemical_substance } } GROUP BY ?i } . FILTER ( ?b = 30 ) }
[]