Simple Question (Direct)
Simple Question
Q23484215
P702
Q863908
USER
What is the gene that encodes bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase    DR_1001 ?
(Q23484215,P702,c(Q863908))
action filter_type
action find
entity Q23484215
relation P702
type Q863908
['Q23484215', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?d WHERE { resource:Q23484215 property:P702 ?d . ?d rdf:type ontology:Q863908 }
bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase    DR_1001
action filter_type
action find
entity bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase    DR_1001
relation encoded by
type nucleic acid sequence
['bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase    DR_1001', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?d WHERE { resource:bifunctional_3-deoxy-7-phosphoheptulonate_synthase/chorismate_mutase____DR_1001 property:encoded_by ?d . ?d rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23185059
SYSTEM
bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase    DR_1001
Q23185059
(Q23484215,P702,c(Q863908))
action filter_type
action find
entity Q23484215
relation P702
type Q863908
The gene that encodes bifunctional 3-deoxy-7 -phosphoheptulonate synthase / chorismate mutase DR_1001 is codes bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase DR 1001
['Q23484215', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?d WHERE { resource:Q23484215 property:P702 ?d . ?d rdf:type ontology:Q863908 }
bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase    DR_1001
The gene that encodes bifunctional 3-deoxy-7 -phosphoheptulonate synthase / chorismate mutase DR_1001 is codes bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase DR 1001
bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase    DR_1001
action filter_type
action find
entity bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase    DR_1001
relation encoded by
type nucleic acid sequence
['bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase    DR_1001', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?d WHERE { resource:bifunctional_3-deoxy-7-phosphoheptulonate_synthase/chorismate_mutase____DR_1001 property:encoded_by ?d . ?d rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23484215
P682
Q2996394
USER
Which biological process is bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase    DR_1001 involved in ?
(Q23484215,P682,c(Q2996394))
action filter_type
action find
entity Q23484215
relation P682
type Q2996394
['Q23484215', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?m WHERE { resource:Q23484215 property:P682 ?m . ?m rdf:type ontology:Q2996394 }
bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase    DR_1001
action filter_type
action find
entity bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase    DR_1001
relation biological process
type biological process
['bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase    DR_1001', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?m WHERE { resource:bifunctional_3-deoxy-7-phosphoheptulonate_synthase/chorismate_mutase____DR_1001 property:biological_process ?m . ?m rdf:type ontology:biological_process }
[]
biological process
Q14914008
SYSTEM
biosynthetic process
Q14914008
(Q23484215,P682,c(Q2996394))
action filter_type
action find
entity Q23484215
relation P682
type Q2996394
[ANSWER] is bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase DR_1001 involved in
['Q23484215', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?m WHERE { resource:Q23484215 property:P682 ?m . ?m rdf:type ontology:Q2996394 }
biosynthetic process
Biosynthetic process is bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase DR_1001 involved in
biosynthetic process
action filter_type
action find
entity bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase    DR_1001
relation biological process
type biological process
['bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase    DR_1001', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?m WHERE { resource:bifunctional_3-deoxy-7-phosphoheptulonate_synthase/chorismate_mutase____DR_1001 property:biological_process ?m . ?m rdf:type ontology:biological_process }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23484215
P688
Q863908
USER
Which nucleic acid sequence encodes bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase    DR_1001 ?
(c(Q863908),P688,Q23484215)
action filter_type
action find_reverse
entity Q23484215
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q23484215']
SELECT DISTINCT ?g WHERE { ?g property:P688 resource:Q23484215 . ?g rdf:type ontology:Q863908 }
bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase    DR_1001
action filter_type
action find_reverse
entity bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase    DR_1001
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase    DR_1001']
SELECT DISTINCT ?g WHERE { ?g property:encodes resource:bifunctional_3-deoxy-7-phosphoheptulonate_synthase/chorismate_mutase____DR_1001 . ?g rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23185059
SYSTEM
bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase    DR_1001
Q23185059
(c(Q863908),P688,Q23484215)
action filter_type
action find_reverse
entity Q23484215
relation P688
type Q863908
Bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase DR 1001 encodes bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase DR_1001
[{'concept': 'Q863908'}, 'P688', 'Q23484215']
SELECT DISTINCT ?g WHERE { ?g property:P688 resource:Q23484215 . ?g rdf:type ontology:Q863908 }
bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase    DR_1001
Bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase DR 1001 encodes bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase DR_1001
bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase    DR_1001
action filter_type
action find_reverse
entity bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase    DR_1001
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase    DR_1001']
SELECT DISTINCT ?g WHERE { ?g property:encodes resource:bifunctional_3-deoxy-7-phosphoheptulonate_synthase/chorismate_mutase____DR_1001 . ?g rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23484215
P703
Q631147
USER
What is the taxon to which that nutrient belongs to ?
(Q23185059,P703,c(Q631147))
action filter_type
action find
entity Q23484215
relation P703
type Q631147
['Q23185059', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?w WHERE { ?w rdf:type ontology:Q631147 . resource:Q23484215 property:P703 ?w }
bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase    DR_1001
action filter_type
action find
entity bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase    DR_1001
relation found in taxon
type infraspecific name
['bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase    DR_1001', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?w WHERE { ?w rdf:type ontology:infraspecific_name . resource:bifunctional_3-deoxy-7-phosphoheptulonate_synthase/chorismate_mutase____DR_1001 property:found_in_taxon ?w }
[]
infraspecific name
Q21102959
SYSTEM
Deinococcus radiodurans R1
Q21102959
(Q23185059,P703,c(Q631147))
action filter_type
action find
entity Q23484215
relation P703
type Q631147
[ANSWER]
['Q23185059', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?w WHERE { ?w rdf:type ontology:Q631147 . resource:Q23484215 property:P703 ?w }
Deinococcus radiodurans R1
Deinococcus radiodurans R1
Deinococcus radiodurans R1
action filter_type
action find
entity bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase    DR_1001
relation found in taxon
type infraspecific name
['bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase    DR_1001', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?w WHERE { ?w rdf:type ontology:infraspecific_name . resource:bifunctional_3-deoxy-7-phosphoheptulonate_synthase/chorismate_mutase____DR_1001 property:found_in_taxon ?w }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q21102959 Q23484094
P703
Q181394
USER
Is aconitate hydratase    DR_1720 found in the taxon that infraspecific name ?
(Q23484094,P703,Q21102959)
action is_in
entity Q21102959
action find
entity Q23484094
relation P703
['Q23484094', 'P703', 'Q21102959']
ASK WHERE { resource:Q23484094 property:P703 resource:Q21102959 }
Deinococcus radiodurans R1 aconitate hydratase    DR_1720
action is_in
entity Deinococcus radiodurans R1
action find
entity aconitate hydratase    DR_1720
relation found in taxon
['aconitate hydratase    DR_1720', 'found in taxon', 'Deinococcus radiodurans R1']
ASK WHERE { resource:aconitate_hydratase____DR_1720 property:found_in_taxon resource:Deinococcus_radiodurans_R1 }
[]
nutrient
SYSTEM
YES
(Q23484094,P703,Q21102959)
action is_in
entity Q21102959
action find
entity Q23484094
relation P703
[ANSWER]
['Q23484094', 'P703', 'Q21102959']
ASK WHERE { resource:Q23484094 property:P703 resource:Q21102959 }
Yes
action is_in
entity Deinococcus radiodurans R1
action find
entity aconitate hydratase    DR_1720
relation found in taxon
['aconitate hydratase    DR_1720', 'found in taxon', 'Deinococcus radiodurans R1']
ASK WHERE { resource:aconitate_hydratase____DR_1720 property:found_in_taxon resource:Deinococcus_radiodurans_R1 }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Mult. entity type
Q23185059 Q23105665
P688
Q181394
USER
How many nutrients are encoded by bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase    DR_1001 or hypothetical protein    BF0497 ?
(Q23185059,P688,c(Q181394)) (Q23105665,P688,c(Q181394))
action count
action union
action filter_type
action find
entity Q23185059
relation P688
type Q181394
action filter_type
action find
entity Q23105665
relation P688
type Q181394
['Q23185059', 'P688', {'concept': 'Q181394'}] ['Q23105665', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?w ) AS ?s ) WHERE { VALUES ( ?r ) { ( resource:Q23185059 ) ( resource:Q23105665 ) } . ?r property:P688 ?w }
bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase    DR_1001 hypothetical protein    BF0497
action count
action union
action filter_type
action find
entity bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase    DR_1001
relation encodes
type nutrient
action filter_type
action find
entity hypothetical protein    BF0497
relation encodes
type nutrient
['bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase    DR_1001', 'encodes', {'concept': 'nutrient'}] ['hypothetical protein    BF0497', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?w ) AS ?s ) WHERE { VALUES ( ?r ) { ( resource:bifunctional_3-deoxy-7-phosphoheptulonate_synthase/chorismate_mutase____DR_1001 ) ( resource:hypothetical_protein____BF0497 ) } . ?r property:encodes ?w }
[]
nutrient
SYSTEM
2
Q23484215 Q23450599
(Q23185059,P688,c(Q181394)) (Q23105665,P688,c(Q181394))
action count
action union
action filter_type
action find
entity Q23185059
relation P688
type Q181394
action filter_type
action find
entity Q23105665
relation P688
type Q181394
[ANSWER]
['Q23185059', 'P688', {'concept': 'Q181394'}] ['Q23105665', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?w ) AS ?s ) WHERE { VALUES ( ?r ) { ( resource:Q23185059 ) ( resource:Q23105665 ) } . ?r property:P688 ?w }
bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase    DR_1001 hypothetical protein    BF0497
2
action count
action union
action filter_type
action find
entity bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase    DR_1001
relation encodes
type nutrient
action filter_type
action find
entity hypothetical protein    BF0497
relation encodes
type nutrient
['bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase    DR_1001', 'encodes', {'concept': 'nutrient'}] ['hypothetical protein    BF0497', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?w ) AS ?s ) WHERE { VALUES ( ?r ) { ( resource:bifunctional_3-deoxy-7-phosphoheptulonate_synthase/chorismate_mutase____DR_1001 ) ( resource:hypothetical_protein____BF0497 ) } . ?r property:encodes ?w }
[]