Simple Question (Direct)
Simple Question
Q21990432
P702
Q863908
USER
Which gene encodes P2X purinoceptor 7 ?
(Q21990432,P702,c(Q863908))
action filter_type
action find
entity Q21990432
relation P702
type Q863908
['Q21990432', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?f WHERE { resource:Q21990432 property:P702 ?f . ?f rdf:type ontology:Q863908 }
P2X purinoceptor 7
action filter_type
action find
entity P2X purinoceptor 7
relation encoded by
type nucleic acid sequence
['P2X purinoceptor 7', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?f WHERE { resource:P2X_purinoceptor_7 property:encoded_by ?f . ?f rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18252869
SYSTEM
P2rx7
Q18252869
(Q21990432,P702,c(Q863908))
action filter_type
action find
entity Q21990432
relation P702
type Q863908
[ANSWER] encodes P2X purinoceptor 7
['Q21990432', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?f WHERE { resource:Q21990432 property:P702 ?f . ?f rdf:type ontology:Q863908 }
P2rx7
P2rx7 encodes P2X purinoceptor 7
P2rx7
action filter_type
action find
entity P2X purinoceptor 7
relation encoded by
type nucleic acid sequence
['P2X purinoceptor 7', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?f WHERE { resource:P2X_purinoceptor_7 property:encoded_by ?f . ?f rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21990432
P703
Q16521
USER
Which taxon is that nutrient found in ?
(Q18252869,P703,c(Q16521))
action filter_type
action find
entity Q21990432
relation P703
type Q16521
['Q18252869', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?u WHERE { resource:Q21990432 property:P703 ?u . ?u rdf:type ontology:Q16521 }
P2X purinoceptor 7
action filter_type
action find
entity P2X purinoceptor 7
relation found in taxon
type taxon
['P2rx7', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?u WHERE { resource:P2X_purinoceptor_7 property:found_in_taxon ?u . ?u rdf:type ontology:taxon }
[]
taxon
Q83310
SYSTEM
Mus musculus
Q83310
(Q18252869,P703,c(Q16521))
action filter_type
action find
entity Q21990432
relation P703
type Q16521
That nutrient is found in [ANSWER]
['Q18252869', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?u WHERE { resource:Q21990432 property:P703 ?u . ?u rdf:type ontology:Q16521 }
Mus musculus
That nutrient is found in Mus musculus
Mus musculus
action filter_type
action find
entity P2X purinoceptor 7
relation found in taxon
type taxon
['P2rx7', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?u WHERE { resource:P2X_purinoceptor_7 property:found_in_taxon ?u . ?u rdf:type ontology:taxon }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21990432
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(c(Q863908),P688,Q83310)
action filter_type
action find_reverse
entity Q21990432
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q83310']
SELECT DISTINCT ?o WHERE { ?o property:P688 resource:Q21990432 . ?o rdf:type ontology:Q863908 }
P2X purinoceptor 7
action filter_type
action find_reverse
entity P2X purinoceptor 7
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Mus musculus']
SELECT DISTINCT ?o WHERE { ?o property:encodes resource:P2X_purinoceptor_7 . ?o rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18252869
SYSTEM
P2rx7
Q18252869
(c(Q863908),P688,Q83310)
action filter_type
action find_reverse
entity Q21990432
relation P688
type Q863908
[ANSWER] encodes that nutrient
[{'concept': 'Q863908'}, 'P688', 'Q83310']
SELECT DISTINCT ?o WHERE { ?o property:P688 resource:Q21990432 . ?o rdf:type ontology:Q863908 }
P2rx7
P2rx7 encodes that nutrient
P2rx7
action filter_type
action find_reverse
entity P2X purinoceptor 7
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Mus musculus']
SELECT DISTINCT ?o WHERE { ?o property:encodes resource:P2X_purinoceptor_7 . ?o rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q18252869 Q24128823
P688
Q181394
USER
Is P2rx7 an encoding of ornithine carbamoyltransferase    EAE_09735 ?
(Q18252869,P688,Q24128823)
action is_in
entity Q24128823
action find
entity Q18252869
relation P688
['Q18252869', 'P688', 'Q24128823']
ASK WHERE { resource:Q18252869 property:P688 resource:Q24128823 }
P2rx7 ornithine carbamoyltransferase    EAE_09735
action is_in
entity ornithine carbamoyltransferase    EAE_09735
action find
entity P2rx7
relation encodes
['P2rx7', 'encodes', 'ornithine carbamoyltransferase    EAE_09735']
ASK WHERE { resource:P2rx7 property:encodes resource:ornithine_carbamoyltransferase____EAE_09735 }
[]
nutrient
SYSTEM
NO
(Q18252869,P688,Q24128823)
action is_in
entity Q24128823
action find
entity Q18252869
relation P688
[ANSWER]
['Q18252869', 'P688', 'Q24128823']
ASK WHERE { resource:Q18252869 property:P688 resource:Q24128823 }
No
action is_in
entity ornithine carbamoyltransferase    EAE_09735
action find
entity P2rx7
relation encodes
['P2rx7', 'encodes', 'ornithine carbamoyltransferase    EAE_09735']
ASK WHERE { resource:P2rx7 property:encodes resource:ornithine_carbamoyltransferase____EAE_09735 }
[]
Logical Reasoning (All)
Logical|Difference|Single_Relation
Q21984693 Q21990432
P681
Q5058355
USER
Which cellular components are the cell components of P2X purinoceptor 7 but not Meckelin ?
AND((Q21990432,P681,c(Q5058355)), NOT((Q21984693,P681,c(Q5058355))))
action filter_type
action difference
action find
entity Q21990432
relation P681
action find
entity Q21984693
relation P681
type Q5058355
{'AND': [['Q21990432', 'P681', {'concept': 'Q5058355'}], {'NOT': [['Q21984693', 'P681', {'concept': 'Q5058355'}]]}]}
SELECT DISTINCT ?p WHERE { ?p rdf:type ontology:Q5058355 . resource:Q21990432 property:P681 ?p . FILTER NOT EXISTS { resource:Q21984693 property:P681 ?p } }
Meckelin P2X purinoceptor 7
action filter_type
action difference
action find
entity P2X purinoceptor 7
relation cell component
action find
entity Meckelin
relation cell component
type cellular component
{'AND': [['P2X purinoceptor 7', 'cell component', {'concept': 'cellular component'}], {'NOT': [['Meckelin', 'cell component', {'concept': 'cellular component'}]]}]}
SELECT DISTINCT ?p WHERE { ?p rdf:type ontology:cellular_component . resource:P2X_purinoceptor_7 property:cell_component ?p . FILTER NOT EXISTS { resource:Meckelin property:cell_component ?p } }
[]
cellular component
Q14873267 Q776995 Q22327479
SYSTEM
cell-cell junction, neuromuscular junction, presynapse
Q14873267 Q776995 Q22327479
AND((Q21990432,P681,c(Q5058355)), NOT((Q21984693,P681,c(Q5058355))))
action filter_type
action difference
action find
entity Q21990432
relation P681
action find
entity Q21984693
relation P681
type Q5058355
[ANSWERS] are the cell components of P2X purinoceptor 7 but not Meckelin
{'AND': [['Q21990432', 'P681', {'concept': 'Q5058355'}], {'NOT': [['Q21984693', 'P681', {'concept': 'Q5058355'}]]}]}
SELECT DISTINCT ?p WHERE { ?p rdf:type ontology:Q5058355 . resource:Q21990432 property:P681 ?p . FILTER NOT EXISTS { resource:Q21984693 property:P681 ?p } }
cell-cell junction neuromuscular junction presynapse
Cell-cell junction, neuromuscular junction and presynapse are the cell components of P2X purinoceptor 7 but not Meckelin
cell-cell junction neuromuscular junction presynapse
action filter_type
action difference
action find
entity P2X purinoceptor 7
relation cell component
action find
entity Meckelin
relation cell component
type cellular component
{'AND': [['P2X purinoceptor 7', 'cell component', {'concept': 'cellular component'}], {'NOT': [['Meckelin', 'cell component', {'concept': 'cellular component'}]]}]}
SELECT DISTINCT ?p WHERE { ?p rdf:type ontology:cellular_component . resource:P2X_purinoceptor_7 property:cell_component ?p . FILTER NOT EXISTS { resource:Meckelin property:cell_component ?p } }
[]
Logical Reasoning (All)
Logical|Difference|Single_Relation
Q79899 Q22327479
P681
Q181394
USER
Which nutrients are presynapse but not cytoplasm a cell component of ?
AND((c(Q181394),P681,Q22327479), NOT((c(Q181394),P681,Q79899)))
action filter_type
action difference
action find_reverse
entity Q22327479
relation P681
action find_reverse
entity Q79899
relation P681
type Q181394
{'AND': [[{'concept': 'Q181394'}, 'P681', 'Q22327479'], {'NOT': [[{'concept': 'Q181394'}, 'P681', 'Q79899']]}]}
SELECT DISTINCT ?n WHERE { ?n property:P681 resource:Q22327479 . MINUS { ?n property:P681 resource:Q79899 } . ?n rdf:type ontology:Q181394 }
cytoplasm presynapse
action filter_type
action difference
action find_reverse
entity presynapse
relation cell component
action find_reverse
entity cytoplasm
relation cell component
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'cell component', 'presynapse'], {'NOT': [[{'concept': 'nutrient'}, 'cell component', 'cytoplasm']]}]}
SELECT DISTINCT ?n WHERE { ?n property:cell_component resource:presynapse . MINUS { ?n property:cell_component resource:cytoplasm } . ?n rdf:type ontology:nutrient }
[]
nutrient
Q14860827 Q21494263 Q21982751 Q21989610 Q21123931 Q21114484 Q21985640 Q21991758 Q21986271 Q21147394
SYSTEM
Some of them are Sodium-dependent serotonin transporter, Complexin-3, AP-1 complex subunit sigma-2, Synaptotagmin-13, Synaptotagmin-10, Synapse differentiation-inducing gene protein 1, Protein lin-7 homolog B, Rho GTPase-activating protein SYDE1, Phospholipase D2, Calcium-dependent secretion activator 2
Q21498107 Q21121376 Q21113510 Q21989608 Q21989605 Q21148742 Q21991761 Q21989606 Q21124594 Q21987307 Q21123931 Q21123113 Q21124600 Q21124602 Q21982751 Q21114128 Q21144031 Q21115708 Q21175111 Q288395 Q21132750 Q21989601 Q21159906 Q21127144 Q14860827 Q21108881 Q21980169 Q21148517 Q21114484 Q21986271 Q21494263 Q21100891 Q21111894 Q1947065 Q21983618 Q21174835 Q14865375 Q21494857 Q21989610 Q21989600 Q21149216 Q21985656 Q4377404 Q410142 Q21145932 Q21991758 Q21143478 Q21147394 Q26250377 Q21430854 Q21987580 Q21988183 Q21117331 Q21985641 Q21990432 Q21985640 Q21496912 Q14911317 Q21126480 Q21112559 Q21174836 Q21139514 Q21134832 Q21124097 Q21115939
AND((c(Q181394),P681,Q22327479), NOT((c(Q181394),P681,Q79899)))
action filter_type
action difference
action find_reverse
entity Q22327479
relation P681
action find_reverse
entity Q79899
relation P681
type Q181394
[ANSWERS] are presynapse but not cytoplasm a cell component of
{'AND': [[{'concept': 'Q181394'}, 'P681', 'Q22327479'], {'NOT': [[{'concept': 'Q181394'}, 'P681', 'Q79899']]}]}
SELECT DISTINCT ?n WHERE { ?n property:P681 resource:Q22327479 . MINUS { ?n property:P681 resource:Q79899 } . ?n rdf:type ontology:Q181394 }
Protein CLN8 Sodium- and chloride-dependent glycine transporter 1 ATP-sensitive inward rectifier potassium channel 10 Synaptotagmin-like protein 1 Synaptotagmin-15 Stonin 2 Synapse differentiation-inducing gene protein 1 Synaptotagmin-17 Synaptotagmin-like protein 3 Neuroligin-1 Synaptotagmin-10 Neuroligin-1 Synaptotagmin-like protein 1 Synaptotagmin-3 AP-1 complex subunit sigma-2 Synaptotagmin-like protein 5 Stonin-2 Complexin-3 Solute carrier family 22 member 2 Histamine H3 receptor BAI1-associated protein 3 Synaptotagmin-4 Protein Wnt-7a High affinity choline transporter 1 Sodium-dependent serotonin transporter Protein lin-7 homolog B Sodium- and chloride-dependent glycine transporter 1 Neurexin-3-beta Synapse differentiation-inducing gene protein 1 Phospholipase D2 Complexin-3 CADPS protein Calcium-dependent secretion activator 1 Voltage-dependent N-type calcium channel subunit alpha-1B Calcium-dependent secretion activator 1 Neurexin-2 Sodium-dependent dopamine transporter Clathrin coat assembly protein AP180 Synaptotagmin-13 Synaptotagmin-3 STON2 protein Protein lin-7 homolog A Presenilin-1 Sodium-dependent serotonin transporter Phospholipase D2 Rho GTPase-activating protein SYDE1 Ca++-dependent secretion activator 2 isoform E Calcium-dependent secretion activator 2 Synaptotagmin-like protein 3 Double C2-like domain-containing protein gamma ATP-sensitive inward rectifier potassium channel 10 Synaptotagmin-like protein 5 Protein lin-7 homolog A Protein Wnt-7a P2X purinoceptor 7 Protein lin-7 homolog B Presenilin-1 Voltage-dependent N-type calcium channel subunit alpha-1B Synaptotagmin-13 Synaptotagmin-17 Neurexin-3 Adhesion G protein-coupled receptor L1 Synaptotagmin-15 Neurexin-3-beta Protein Wnt-3a
Sodium-dependent serotonin transporter, Complexin-3, AP-1 complex subunit sigma-2, Synaptotagmin-13, Synaptotagmin-10, Synapse differentiation-inducing gene protein 1, Protein lin-7 homolog B, Rho GTPase-activating protein SYDE1, Phospholipase D2 and Calcium-dependent secretion activator 2 are presynapse but not cytoplasm a cell component of
Sodium-dependent serotonin transporter Complexin-3 AP-1 complex subunit sigma-2 Synaptotagmin-13 Synaptotagmin-10 Synapse differentiation-inducing gene protein 1 Protein lin-7 homolog B Rho GTPase-activating protein SYDE1 Phospholipase D2 Calcium-dependent secretion activator 2
action filter_type
action difference
action find_reverse
entity presynapse
relation cell component
action find_reverse
entity cytoplasm
relation cell component
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'cell component', 'presynapse'], {'NOT': [[{'concept': 'nutrient'}, 'cell component', 'cytoplasm']]}]}
SELECT DISTINCT ?n WHERE { ?n property:cell_component resource:presynapse . MINUS { ?n property:cell_component resource:cytoplasm } . ?n rdf:type ontology:nutrient }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23026706 Q18252869
P702
Q181394
USER
Which nutrients do P2rx7 or hypothetical protein    LA_0479 encode ?
OR((c(Q181394),P702,Q18252869), (c(Q181394),P702,Q23026706))
action filter_type
action union
action find_reverse
entity Q18252869
relation P702
action find_reverse
entity Q23026706
relation P702
type Q181394
{'OR': [[{'concept': 'Q181394'}, 'P702', 'Q18252869'], [{'concept': 'Q181394'}, 'P702', 'Q23026706']]}
SELECT DISTINCT ?v WHERE { { ?v property:P702 ?n . VALUES ( ?n ) { ( resource:Q18252869 ) ( resource:Q23026706 ) } } . ?v rdf:type ontology:Q181394 }
hypothetical protein    LA_0479 P2rx7
action filter_type
action union
action find_reverse
entity P2rx7
relation encoded by
action find_reverse
entity hypothetical protein    LA_0479
relation encoded by
type nutrient
{'OR': [[{'concept': 'nutrient'}, 'encoded by', 'P2rx7'], [{'concept': 'nutrient'}, 'encoded by', 'hypothetical protein    LA_0479']]}
SELECT DISTINCT ?v WHERE { { ?v property:encoded_by ?n . VALUES ( ?n ) { ( resource:P2rx7 ) ( resource:hypothetical_protein____LA_0479 ) } } . ?v rdf:type ontology:nutrient }
[]
nutrient
Q23065966 Q21990432
SYSTEM
hypothetical protein    LA_0479, P2X purinoceptor 7
Q23065966 Q21990432
OR((c(Q181394),P702,Q18252869), (c(Q181394),P702,Q23026706))
action filter_type
action union
action find_reverse
entity Q18252869
relation P702
action find_reverse
entity Q23026706
relation P702
type Q181394
[ANSWERS]
{'OR': [[{'concept': 'Q181394'}, 'P702', 'Q18252869'], [{'concept': 'Q181394'}, 'P702', 'Q23026706']]}
SELECT DISTINCT ?v WHERE { { ?v property:P702 ?n . VALUES ( ?n ) { ( resource:Q18252869 ) ( resource:Q23026706 ) } } . ?v rdf:type ontology:Q181394 }
hypothetical protein    LA_0479 P2X purinoceptor 7
P2 rx7 or hypothetical protein LA_0479 encode the hypothetical protein LA 0479 and P2X purinoceptor 7
hypothetical protein    LA_0479 P2X purinoceptor 7
action filter_type
action union
action find_reverse
entity P2rx7
relation encoded by
action find_reverse
entity hypothetical protein    LA_0479
relation encoded by
type nutrient
{'OR': [[{'concept': 'nutrient'}, 'encoded by', 'P2rx7'], [{'concept': 'nutrient'}, 'encoded by', 'hypothetical protein    LA_0479']]}
SELECT DISTINCT ?v WHERE { { ?v property:encoded_by ?n . VALUES ( ?n ) { ( resource:P2rx7 ) ( resource:hypothetical_protein____LA_0479 ) } } . ?v rdf:type ontology:nutrient }
[]