Simple Question (Direct)
Simple Question
Q21990209
P702
Q863908
USER
What is the gene that encodes Arginine--tRNA ligase, cytoplasmic ?
(Q21990209,P702,c(Q863908))
action filter_type
action find
entity Q21990209
relation P702
type Q863908
['Q21990209', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?a WHERE { resource:Q21990209 property:P702 ?a . ?a rdf:type ontology:Q863908 }
Arginine--tRNA ligase, cytoplasmic
action filter_type
action find
entity Arginine--tRNA ligase, cytoplasmic
relation encoded by
type nucleic acid sequence
['Arginine--tRNA ligase, cytoplasmic', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?a WHERE { resource:Arginine--tRNA_ligase,_cytoplasmic property:encoded_by ?a . ?a rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18272067
SYSTEM
Rars
Q18272067
(Q21990209,P702,c(Q863908))
action filter_type
action find
entity Q21990209
relation P702
type Q863908
The gene that encodes Arginine -- tRNA ligase , cytoplasmic is [ANSWER]
['Q21990209', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?a WHERE { resource:Q21990209 property:P702 ?a . ?a rdf:type ontology:Q863908 }
Rars
The gene that encodes Arginine -- tRNA ligase , cytoplasmic is Rars
Rars
action filter_type
action find
entity Arginine--tRNA ligase, cytoplasmic
relation encoded by
type nucleic acid sequence
['Arginine--tRNA ligase, cytoplasmic', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?a WHERE { resource:Arginine--tRNA_ligase,_cytoplasmic property:encoded_by ?a . ?a rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21990209
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(c(Q863908),P688,Q18272067)
action filter_type
action find_reverse
entity Q21990209
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q18272067']
SELECT DISTINCT ?u WHERE { ?u property:P688 resource:Q21990209 . ?u rdf:type ontology:Q863908 }
Arginine--tRNA ligase, cytoplasmic
action filter_type
action find_reverse
entity Arginine--tRNA ligase, cytoplasmic
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Rars']
SELECT DISTINCT ?u WHERE { ?u property:encodes resource:Arginine--tRNA_ligase,_cytoplasmic . ?u rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18272067
SYSTEM
Rars
Q18272067
(c(Q863908),P688,Q18272067)
action filter_type
action find_reverse
entity Q21990209
relation P688
type Q863908
[ANSWER] encodes that nutrient
[{'concept': 'Q863908'}, 'P688', 'Q18272067']
SELECT DISTINCT ?u WHERE { ?u property:P688 resource:Q21990209 . ?u rdf:type ontology:Q863908 }
Rars
Rars encodes that nutrient
Rars
action filter_type
action find_reverse
entity Arginine--tRNA ligase, cytoplasmic
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Rars']
SELECT DISTINCT ?u WHERE { ?u property:encodes resource:Arginine--tRNA_ligase,_cytoplasmic . ?u rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q18272067 Q18031043
P684
Q863908
USER
Does RARS have that one as its orthologous gene ?
(Q18031043,P684,Q18272067)
action is_in
entity Q18031043
action find
entity Q18272067
relation P684
['Q18031043', 'P684', 'Q18272067']
ASK WHERE { resource:Q18272067 property:P684 resource:Q18031043 }
Rars RARS
action is_in
entity RARS
action find
entity Rars
relation ortholog
['RARS', 'ortholog', 'Rars']
ASK WHERE { resource:Rars property:ortholog resource:RARS }
[]
nucleic acid sequence
SYSTEM
YES
(Q18031043,P684,Q18272067)
action is_in
entity Q18031043
action find
entity Q18272067
relation P684
[ANSWER]
['Q18031043', 'P684', 'Q18272067']
ASK WHERE { resource:Q18272067 property:P684 resource:Q18031043 }
Yes
action is_in
entity RARS
action find
entity Rars
relation ortholog
['RARS', 'ortholog', 'Rars']
ASK WHERE { resource:Rars property:ortholog resource:RARS }
[]
Verification (Boolean) (All)
Verification|3 entities, all direct, 2 are query entities
Q21990209 Q24774126 Q39572
P681
Q15989253
USER
Does Arginine--tRNA ligase, cytoplasmic have Antenna complex, alpha/beta subunit and mitochondrion as cell component ?
(Q21990209,P681,Q24774126) (Q21990209,P681,Q39572)
action is_in
entity Q21990209
action intersection
action find_reverse
entity Q24774126
relation P681
action find_reverse
entity Q39572
relation P681
['Q21990209', 'P681', 'Q24774126'] ['Q21990209', 'P681', 'Q39572']
ASK WHERE { resource:Q21990209 property:P681 resource:Q24774126 . resource:Q21990209 property:P681 resource:Q39572 }
Arginine--tRNA ligase, cytoplasmic Antenna complex, alpha/beta subunit mitochondrion
action is_in
entity Arginine--tRNA ligase, cytoplasmic
action intersection
action find_reverse
entity Antenna complex, alpha/beta subunit
relation cell component
action find_reverse
entity mitochondrion
relation cell component
['Arginine--tRNA ligase, cytoplasmic', 'cell component', 'Antenna complex, alpha/beta subunit'] ['Arginine--tRNA ligase, cytoplasmic', 'cell component', 'mitochondrion']
ASK WHERE { resource:Arginine--tRNA_ligase,_cytoplasmic property:cell_component resource:Antenna_complex,_alpha/beta_subunit . resource:Arginine--tRNA_ligase,_cytoplasmic property:cell_component resource:mitochondrion }
[]
part
SYSTEM
NO and YES respectively
(Q21990209,P681,Q24774126) (Q21990209,P681,Q39572)
action is_in
entity Q21990209
action intersection
action find_reverse
entity Q24774126
relation P681
action find_reverse
entity Q39572
relation P681
[ANSWER]
['Q21990209', 'P681', 'Q24774126'] ['Q21990209', 'P681', 'Q39572']
ASK WHERE { resource:Q21990209 property:P681 resource:Q24774126 . resource:Q21990209 property:P681 resource:Q39572 }
NO and YES respectively
action is_in
entity Arginine--tRNA ligase, cytoplasmic
action intersection
action find_reverse
entity Antenna complex, alpha/beta subunit
relation cell component
action find_reverse
entity mitochondrion
relation cell component
['Arginine--tRNA ligase, cytoplasmic', 'cell component', 'Antenna complex, alpha/beta subunit'] ['Arginine--tRNA ligase, cytoplasmic', 'cell component', 'mitochondrion']
ASK WHERE { resource:Arginine--tRNA_ligase,_cytoplasmic property:cell_component resource:Antenna_complex,_alpha/beta_subunit . resource:Arginine--tRNA_ligase,_cytoplasmic property:cell_component resource:mitochondrion }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Mult. entity type
Q18272067 Q18041495
P684
Q863908
USER
How many nucleic acid sequences are an otrhologus genes for Rars or CCDC40 ?
(Q18272067,P684,c(Q863908)) (Q18041495,P684,c(Q863908))
action count
action union
action filter_type
action find
entity Q18272067
relation P684
type Q863908
action filter_type
action find
entity Q18041495
relation P684
type Q863908
['Q18272067', 'P684', {'concept': 'Q863908'}] ['Q18041495', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ( COUNT ( ?r ) AS ?q ) WHERE { { resource:Q18272067 property:P684 ?r . ?r rdf:type ontology:Q863908 } UNION { ?r rdf:type ontology:Q863908 . resource:Q18041495 property:P684 ?r } }
Rars CCDC40
action count
action union
action filter_type
action find
entity Rars
relation ortholog
type nucleic acid sequence
action filter_type
action find
entity CCDC40
relation ortholog
type nucleic acid sequence
['Rars', 'ortholog', {'concept': 'nucleic acid sequence'}] ['CCDC40', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ( COUNT ( ?r ) AS ?q ) WHERE { { resource:Rars property:ortholog ?r . ?r rdf:type ontology:nucleic_acid_sequence } UNION { ?r rdf:type ontology:nucleic_acid_sequence . resource:CCDC40 property:ortholog ?r } }
[]
nucleic acid sequence
SYSTEM
2
Q18296002 Q18031043
(Q18272067,P684,c(Q863908)) (Q18041495,P684,c(Q863908))
action count
action union
action filter_type
action find
entity Q18272067
relation P684
type Q863908
action filter_type
action find
entity Q18041495
relation P684
type Q863908
[ANSWER]
['Q18272067', 'P684', {'concept': 'Q863908'}] ['Q18041495', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ( COUNT ( ?r ) AS ?q ) WHERE { { resource:Q18272067 property:P684 ?r . ?r rdf:type ontology:Q863908 } UNION { ?r rdf:type ontology:Q863908 . resource:Q18041495 property:P684 ?r } }
Ccdc40 RARS
2
action count
action union
action filter_type
action find
entity Rars
relation ortholog
type nucleic acid sequence
action filter_type
action find
entity CCDC40
relation ortholog
type nucleic acid sequence
['Rars', 'ortholog', {'concept': 'nucleic acid sequence'}] ['CCDC40', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ( COUNT ( ?r ) AS ?q ) WHERE { { resource:Rars property:ortholog ?r . ?r rdf:type ontology:nucleic_acid_sequence } UNION { ?r rdf:type ontology:nucleic_acid_sequence . resource:CCDC40 property:ortholog ?r } }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21990209
P703
Q16521
USER
Which taxon is Arginine--tRNA ligase, cytoplasmic found in ?
(Q21990209,P703,c(Q16521))
action filter_type
action find
entity Q21990209
relation P703
type Q16521
['Q21990209', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?j WHERE { resource:Q21990209 property:P703 ?j . ?j rdf:type ontology:Q16521 }
Arginine--tRNA ligase, cytoplasmic
action filter_type
action find
entity Arginine--tRNA ligase, cytoplasmic
relation found in taxon
type taxon
['Arginine--tRNA ligase, cytoplasmic', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?j WHERE { resource:Arginine--tRNA_ligase,_cytoplasmic property:found_in_taxon ?j . ?j rdf:type ontology:taxon }
[]
taxon
Q83310
SYSTEM
Mus musculus
Q83310
(Q21990209,P703,c(Q16521))
action filter_type
action find
entity Q21990209
relation P703
type Q16521
Arginine -- tRNA ligase , cytoplasmic is found in [ANSWER]
['Q21990209', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?j WHERE { resource:Q21990209 property:P703 ?j . ?j rdf:type ontology:Q16521 }
Mus musculus
Arginine -- tRNA ligase , cytoplasmic is found in Mus musculus
Mus musculus
action filter_type
action find
entity Arginine--tRNA ligase, cytoplasmic
relation found in taxon
type taxon
['Arginine--tRNA ligase, cytoplasmic', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?j WHERE { resource:Arginine--tRNA_ligase,_cytoplasmic property:found_in_taxon ?j . ?j rdf:type ontology:taxon }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q18300537
Q16521
USER
And also tell me about Olfr1179?
(Q18300537,P703,c(Q16521))
action filter_type
action find
entity Q18300537
relation P703
type Q16521
['Q18300537', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?n WHERE { resource:Q18300537 property:P703 ?n . ?n rdf:type ontology:Q16521 }
Olfr1179
action filter_type
action find
entity Olfr1179
relation found in taxon
type taxon
['Olfr1179', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?n WHERE { resource:Olfr1179 property:found_in_taxon ?n . ?n rdf:type ontology:taxon }
[]
taxon
Q83310
SYSTEM
Mus musculus
Q83310
(Q18300537,P703,c(Q16521))
action filter_type
action find
entity Q18300537
relation P703
type Q16521
[ANSWER]
['Q18300537', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?n WHERE { resource:Q18300537 property:P703 ?n . ?n rdf:type ontology:Q16521 }
Mus musculus
Mus musculus
action filter_type
action find
entity Olfr1179
relation found in taxon
type taxon
['Olfr1179', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?n WHERE { resource:Olfr1179 property:found_in_taxon ?n . ?n rdf:type ontology:taxon }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Mult. entity type|Indirect
P180
Q16521 Q838948 Q3305213
USER
How many taxons are expressed in greater number of works of art or paintings than that taxon ?
(c(Q838948)|c(Q3305213),P180,c(Q16521))
action count
action greater
action union
action find_reverse_tuple_counts
relation P180
type Q16521
type Q838948
action find_reverse_tuple_counts
relation P180
type Q16521
type Q3305213
action count
action filter_multi_types
action find_reverse
entity Q83310
relation P180
type Q838948
type Q3305213
[[{'concept': 'Q838948'}, {'concept': 'Q3305213'}], 'P180', {'concept': 'Q16521'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?j ) WHERE { { SELECT DISTINCT ?y ( COUNT ( ?u ) AS ?l ) WHERE { { ?u property:P180 ?y . ?y rdf:type ontology:Q16521 . ?u rdf:type ontology:Q838948 } UNION { ?u property:P180 ?y . ?y rdf:type ontology:Q16521 . ?u rdf:type ontology:Q3305213 } } GROUP BY ?y } . { SELECT DISTINCT ( COUNT ( ?i ) AS ?b ) WHERE { { { ?i rdf:type ontology:Q838948 } UNION { ?i rdf:type ontology:Q3305213 } } . ?i property:P180 resource:Q83310 } } . FILTER ( ?l > ?b ) }
action count
action greater
action union
action find_reverse_tuple_counts
relation depicts
type taxon
type work of art
action find_reverse_tuple_counts
relation depicts
type taxon
type painting
action count
action filter_multi_types
action find_reverse
entity Mus musculus
relation depicts
type work of art
type painting
[[{'concept': 'work of art'}, {'concept': 'painting'}], 'depicts', {'concept': 'taxon'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?j ) WHERE { { SELECT DISTINCT ?y ( COUNT ( ?u ) AS ?l ) WHERE { { ?u property:depicts ?y . ?y rdf:type ontology:taxon . ?u rdf:type ontology:work_of_art } UNION { ?u property:depicts ?y . ?y rdf:type ontology:taxon . ?u rdf:type ontology:painting } } GROUP BY ?y } . { SELECT DISTINCT ( COUNT ( ?i ) AS ?b ) WHERE { { { ?i rdf:type ontology:work_of_art } UNION { ?i rdf:type ontology:painting } } . ?i property:depicts resource:Mus_musculus } } . FILTER ( ?l > ?b ) }
[]
taxon work of art painting
SYSTEM
102
Q179367 Q71516 Q780 Q40802 Q1029638 Q787 Q19125 Q193833 Q10998 Q41050 Q244377 Q34718 Q9147 Q25408 Q147783 Q19413 Q36050 Q192056 Q146911 Q7372 Q19707 Q473194 Q163963 Q168976 Q33609 Q28319 Q189193 Q157236 Q28507 Q26771 Q62181 Q25357 Q25350 Q572447 Q35922 Q215420 Q25222 Q148650 Q12024 Q83902 Q830854 Q756 Q30944 Q35694 Q5113 Q2102 Q157555 Q25265 Q43238 Q34505 Q2047589 Q12106 Q651012 Q26158 Q43794 Q11788 Q39861 Q5194627 Q10856 Q18099 Q22724 Q146391 Q997482 Q46076 Q1357 Q2934 Q79794 Q23390 Q186101 Q14080 Q4179040 Q34384 Q140 Q146 Q39624 Q30263 Q130980 Q1047931 Q1249634 Q223044 Q19939 Q729 Q2216236 Q26899 Q12004 Q158808 Q34687 Q36396 Q6495741 Q11575 Q157343 Q26006 Q381584 Q1049642 Q35517 Q158984 Q18845 Q42196 Q42292 Q157154 Q55808 Q58697
(c(Q838948)|c(Q3305213),P180,c(Q16521))
action count
action greater
action union
action find_reverse_tuple_counts
relation P180
type Q16521
type Q838948
action find_reverse_tuple_counts
relation P180
type Q16521
type Q3305213
action count
action filter_multi_types
action find_reverse
entity Q83310
relation P180
type Q838948
type Q3305213
[ANSWER]
[[{'concept': 'Q838948'}, {'concept': 'Q3305213'}], 'P180', {'concept': 'Q16521'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?j ) WHERE { { SELECT DISTINCT ?y ( COUNT ( ?u ) AS ?l ) WHERE { { ?u property:P180 ?y . ?y rdf:type ontology:Q16521 . ?u rdf:type ontology:Q838948 } UNION { ?u property:P180 ?y . ?y rdf:type ontology:Q16521 . ?u rdf:type ontology:Q3305213 } } GROUP BY ?y } . { SELECT DISTINCT ( COUNT ( ?i ) AS ?b ) WHERE { { { ?i rdf:type ontology:Q838948 } UNION { ?i rdf:type ontology:Q3305213 } } . ?i property:P180 resource:Q83310 } } . FILTER ( ?l > ?b ) }
European Roller dromedary chicken Brachyura Red colobus domestic pig scorpion ibis Solanum tuberosum orangutan Egyptian cobra rhinoceros Spheniscidae Achillea millefolium Poa pratensis Pelecanus Salix adder Cupressus shark donkey ox Agrostis stolonifera Eastern Imperial Eagle polar bear Lepidoptera Great Auk Liriodendron Ciconiidae Hedera Salamandra Common Raven Abies aspic viper bamboo stickleback owl Nymphaeaceae Pinus grasshopper steppe wisent plant Streptopelia jaguar bird snake Digitalis purpurea Felidae Poaceae hippopotamus Blossom Triticum Viperinae Bellis perennis Meleagris bear Hirundinidae Lilium pigeon bison Ovis Papaver Bubbles Lepus spider goat red deer deer aquatic plant Arecaceae Iron Wolf Cygnus lion cat reindeer pinniped Iguanodon Dactylis Pecten maximus Testudines tiger animal rooster Aesculus hippocastanum Quercus Cyperus papyrus Rosa rat Batoidea maize Veronica chamaedrys Laurus nobilis Cynoglossum officinale Indigo Bunting Alces alces Dianthus caryophyllus Common Cuckoo Blue whale Acer Plantago major seabird wild boar
102
action count
action greater
action union
action find_reverse_tuple_counts
relation depicts
type taxon
type work of art
action find_reverse_tuple_counts
relation depicts
type taxon
type painting
action count
action filter_multi_types
action find_reverse
entity Mus musculus
relation depicts
type work of art
type painting
[[{'concept': 'work of art'}, {'concept': 'painting'}], 'depicts', {'concept': 'taxon'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?j ) WHERE { { SELECT DISTINCT ?y ( COUNT ( ?u ) AS ?l ) WHERE { { ?u property:depicts ?y . ?y rdf:type ontology:taxon . ?u rdf:type ontology:work_of_art } UNION { ?u property:depicts ?y . ?y rdf:type ontology:taxon . ?u rdf:type ontology:painting } } GROUP BY ?y } . { SELECT DISTINCT ( COUNT ( ?i ) AS ?b ) WHERE { { { ?i rdf:type ontology:work_of_art } UNION { ?i rdf:type ontology:painting } } . ?i property:depicts resource:Mus_musculus } } . FILTER ( ?l > ?b ) }
[]