Simple Question (Direct)
Simple Question
Q27549559
P703
Q631147
USER
What is the taxon to which End3p YNL084C belongs to ?
(Q27549559,P703,c(Q631147))
action filter_type
action find
entity Q27549559
relation P703
type Q631147
['Q27549559', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?q WHERE { resource:Q27549559 property:P703 ?q . ?q rdf:type ontology:Q631147 }
End3p YNL084C
action filter_type
action find
entity End3p YNL084C
relation found in taxon
type infraspecific name
['End3p YNL084C', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?q WHERE { resource:End3p_YNL084C property:found_in_taxon ?q . ?q rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q27510868
SYSTEM
Saccharomyces cerevisiae S288c
Q27510868
(Q27549559,P703,c(Q631147))
action filter_type
action find
entity Q27549559
relation P703
type Q631147
[ANSWER]
['Q27549559', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?q WHERE { resource:Q27549559 property:P703 ?q . ?q rdf:type ontology:Q631147 }
Saccharomyces cerevisiae S288c
Saccharomyces cerevisiae S288c
Saccharomyces cerevisiae S288c
action filter_type
action find
entity End3p YNL084C
relation found in taxon
type infraspecific name
['End3p YNL084C', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?q WHERE { resource:End3p_YNL084C property:found_in_taxon ?q . ?q rdf:type ontology:infraspecific_name }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q27549559
P688
Q863908
USER
Which nucleic acid sequence encodes End3p YNL084C ?
(c(Q863908),P688,Q27549559)
action filter_type
action find_reverse
entity Q27549559
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q27549559']
SELECT DISTINCT ?m WHERE { ?m property:P688 resource:Q27549559 . ?m rdf:type ontology:Q863908 }
End3p YNL084C
action filter_type
action find_reverse
entity End3p YNL084C
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'End3p YNL084C']
SELECT DISTINCT ?m WHERE { ?m property:encodes resource:End3p_YNL084C . ?m rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q27542462
SYSTEM
End3p YNL084C
Q27542462
(c(Q863908),P688,Q27549559)
action filter_type
action find_reverse
entity Q27549559
relation P688
type Q863908
[ANSWER] encodes [ANSWER]
[{'concept': 'Q863908'}, 'P688', 'Q27549559']
SELECT DISTINCT ?m WHERE { ?m property:P688 resource:Q27549559 . ?m rdf:type ontology:Q863908 }
End3p YNL084C
End3p YNL084C encodes End3p YNL084C
End3p YNL084C
action filter_type
action find_reverse
entity End3p YNL084C
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'End3p YNL084C']
SELECT DISTINCT ?m WHERE { ?m property:encodes resource:End3p_YNL084C . ?m rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q27542462
P702
Q181394
USER
What is encoded by that nucleic acid sequence ?
(c(Q181394),P702,Q27542462)
action filter_type
action find_reverse
entity Q27542462
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q27542462']
SELECT DISTINCT ?e WHERE { ?e rdf:type ontology:Q181394 . ?e property:P702 resource:Q27542462 }
End3p YNL084C
action filter_type
action find_reverse
entity End3p YNL084C
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'End3p YNL084C']
SELECT DISTINCT ?e WHERE { ?e rdf:type ontology:nutrient . ?e property:encoded_by resource:End3p_YNL084C }
[]
nutrient
Q27549559
SYSTEM
End3p YNL084C
Q27549559
(c(Q181394),P702,Q27542462)
action filter_type
action find_reverse
entity Q27542462
relation P702
type Q181394
[ANSWER] is encoded by that nucleic acid sequence
[{'concept': 'Q181394'}, 'P702', 'Q27542462']
SELECT DISTINCT ?e WHERE { ?e rdf:type ontology:Q181394 . ?e property:P702 resource:Q27542462 }
End3p YNL084C
End3p YNL084C is encoded by that nucleic acid sequence
End3p YNL084C
action filter_type
action find_reverse
entity End3p YNL084C
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'End3p YNL084C']
SELECT DISTINCT ?e WHERE { ?e rdf:type ontology:nutrient . ?e property:encoded_by resource:End3p_YNL084C }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q27549559
P680
Q44424
USER
Which chemical bond represents molecular function of that nutrient ?
(Q27549559,P680,c(Q44424))
action filter_type
action find
entity Q27549559
relation P680
type Q44424
['Q27549559', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?g WHERE { resource:Q27549559 property:P680 ?g . ?g rdf:type ontology:Q44424 }
End3p YNL084C
action filter_type
action find
entity End3p YNL084C
relation molecular function
type chemical bond
['End3p YNL084C', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?g WHERE { resource:End3p_YNL084C property:molecular_function ?g . ?g rdf:type ontology:chemical_bond }
[]
chemical bond
Q14633862
SYSTEM
calcium ion binding
Q14633862
(Q27549559,P680,c(Q44424))
action filter_type
action find
entity Q27549559
relation P680
type Q44424
The [ANSWER] represents molecular function of that nutrient
['Q27549559', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?g WHERE { resource:Q27549559 property:P680 ?g . ?g rdf:type ontology:Q44424 }
calcium ion binding
The calcium ion binding represents molecular function of that nutrient
calcium ion binding
action filter_type
action find
entity End3p YNL084C
relation molecular function
type chemical bond
['End3p YNL084C', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?g WHERE { resource:End3p_YNL084C property:molecular_function ?g . ?g rdf:type ontology:chemical_bond }
[]
Comparative Reasoning (All)
Comparative|More/Less|Single entity type
Q21124879
P682
Q1057 Q181394
USER
Which metabolic processes are lesser number of nutrients involved in than interleukin-8 biosynthetic process ?
(c(Q181394),P682,c(Q1057))
action less
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
action count
action filter_type
action find_reverse
entity Q21124879
relation P682
type Q181394
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?f WHERE { { SELECT DISTINCT ?f ( COUNT ( ?y ) AS ?q ) WHERE { ?y property:P682 ?f . ?f rdf:type ontology:Q1057 . ?y rdf:type ontology:Q181394 } GROUP BY ?f } . { SELECT DISTINCT ( COUNT ( ?a ) AS ?m ) WHERE { ?a property:P682 resource:Q21124879 . ?a rdf:type ontology:Q181394 } } . FILTER ( ?q < ?m ) }
interleukin-8 biosynthetic process
action less
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
action count
action filter_type
action find_reverse
entity interleukin-8 biosynthetic process
relation biological process
type nutrient
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?f WHERE { { SELECT DISTINCT ?f ( COUNT ( ?y ) AS ?q ) WHERE { ?y property:biological_process ?f . ?f rdf:type ontology:metabolic_process . ?y rdf:type ontology:nutrient } GROUP BY ?f } . { SELECT DISTINCT ( COUNT ( ?a ) AS ?m ) WHERE { ?a property:biological_process resource:interleukin-8_biosynthetic_process . ?a rdf:type ontology:nutrient } } . FILTER ( ?q < ?m ) }
[]
metabolic process nutrient
Q14865941 Q14907181 Q21133617
SYSTEM
connective tissue growth factor biosynthetic process, granulocyte macrophage colony-stimulating factor biosynthetic process, actin modification
Q21133617 Q21121151 Q22275051 Q21111970 Q14865941 Q22282595 Q14907181 Q21119193
(c(Q181394),P682,c(Q1057))
action less
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
action count
action filter_type
action find_reverse
entity Q21124879
relation P682
type Q181394
[ANSWERS] are lesser number of nutrients involved in than interleukin-8 biosynthetic process
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?f WHERE { { SELECT DISTINCT ?f ( COUNT ( ?y ) AS ?q ) WHERE { ?y property:P682 ?f . ?f rdf:type ontology:Q1057 . ?y rdf:type ontology:Q181394 } GROUP BY ?f } . { SELECT DISTINCT ( COUNT ( ?a ) AS ?m ) WHERE { ?a property:P682 resource:Q21124879 . ?a rdf:type ontology:Q181394 } } . FILTER ( ?q < ?m ) }
actin modification reactive nitrogen species metabolic process halogenated hydrocarbon metabolic process reactive oxygen species biosynthetic process connective tissue growth factor biosynthetic process ketone body metabolic process granulocyte macrophage colony-stimulating factor biosynthetic process cellular modified amino acid metabolic process
Connective tissue growth factor biosynthetic process, granulocyte macrophage colony-stimulating factor biosynthetic process and actin modification are lesser number of nutrients involved in than interleukin-8 biosynthetic process
connective tissue growth factor biosynthetic process granulocyte macrophage colony-stimulating factor biosynthetic process actin modification
action less
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
action count
action filter_type
action find_reverse
entity interleukin-8 biosynthetic process
relation biological process
type nutrient
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?f WHERE { { SELECT DISTINCT ?f ( COUNT ( ?y ) AS ?q ) WHERE { ?y property:biological_process ?f . ?f rdf:type ontology:metabolic_process . ?y rdf:type ontology:nutrient } GROUP BY ?f } . { SELECT DISTINCT ( COUNT ( ?a ) AS ?m ) WHERE { ?a property:biological_process resource:interleukin-8_biosynthetic_process . ?a rdf:type ontology:nutrient } } . FILTER ( ?q < ?m ) }
[]
Comparative Reasoning (All)
Comparative|More/Less|Single entity type|Incomplete
Q14902250
P682
Q1057 Q181394
USER
And what about telomere maintenance via semi-conservative replication?
(c(Q181394),P682,c(Q1057))
action less
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
action count
action filter_type
action find_reverse
entity Q14902250
relation P682
type Q181394
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?c WHERE { { SELECT DISTINCT ?c ( COUNT ( ?h ) AS ?w ) WHERE { ?h property:P682 ?c . ?c rdf:type ontology:Q1057 . ?h rdf:type ontology:Q181394 } GROUP BY ?c } . { SELECT DISTINCT ( COUNT ( ?s ) AS ?v ) WHERE { ?s property:P682 resource:Q14902250 . ?s rdf:type ontology:Q181394 } } . FILTER ( ?w < ?v ) }
telomere maintenance via semi-conservative replication
action less
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
action count
action filter_type
action find_reverse
entity telomere maintenance via semi-conservative replication
relation biological process
type nutrient
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?c WHERE { { SELECT DISTINCT ?c ( COUNT ( ?h ) AS ?w ) WHERE { ?h property:biological_process ?c . ?c rdf:type ontology:metabolic_process . ?h rdf:type ontology:nutrient } GROUP BY ?c } . { SELECT DISTINCT ( COUNT ( ?s ) AS ?v ) WHERE { ?s property:biological_process resource:telomere_maintenance_via_semi-conservative_replication . ?s rdf:type ontology:nutrient } } . FILTER ( ?w < ?v ) }
[]
metabolic process nutrient
Q14865941 Q14907181 Q21133617
SYSTEM
connective tissue growth factor biosynthetic process, granulocyte macrophage colony-stimulating factor biosynthetic process, actin modification
Q21133617 Q21121151 Q22275051 Q21111970 Q14865941 Q22282595 Q14907181 Q21119193
(c(Q181394),P682,c(Q1057))
action less
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
action count
action filter_type
action find_reverse
entity Q14902250
relation P682
type Q181394
[ANSWERS]
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?c WHERE { { SELECT DISTINCT ?c ( COUNT ( ?h ) AS ?w ) WHERE { ?h property:P682 ?c . ?c rdf:type ontology:Q1057 . ?h rdf:type ontology:Q181394 } GROUP BY ?c } . { SELECT DISTINCT ( COUNT ( ?s ) AS ?v ) WHERE { ?s property:P682 resource:Q14902250 . ?s rdf:type ontology:Q181394 } } . FILTER ( ?w < ?v ) }
actin modification reactive nitrogen species metabolic process halogenated hydrocarbon metabolic process reactive oxygen species biosynthetic process connective tissue growth factor biosynthetic process ketone body metabolic process granulocyte macrophage colony-stimulating factor biosynthetic process cellular modified amino acid metabolic process
connective tissue growth factor biosynthetic process granulocyte macrophage colony-stimulating factor biosynthetic process actin modification
action less
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
action count
action filter_type
action find_reverse
entity telomere maintenance via semi-conservative replication
relation biological process
type nutrient
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?c WHERE { { SELECT DISTINCT ?c ( COUNT ( ?h ) AS ?w ) WHERE { ?h property:biological_process ?c . ?c rdf:type ontology:metabolic_process . ?h rdf:type ontology:nutrient } GROUP BY ?c } . { SELECT DISTINCT ( COUNT ( ?s ) AS ?v ) WHERE { ?s property:biological_process resource:telomere_maintenance_via_semi-conservative_replication . ?s rdf:type ontology:nutrient } } . FILTER ( ?w < ?v ) }
[]
Clarification
Comparative|Count over More/Less|Single entity type|Indirect
P682
Q1057 Q181394
USER
How many metabolic processes are a biological processes that more number of nutrients are involved in than that metabolic process ?
(c(Q181394),P682,c(Q1057))
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?x ) WHERE { ?z property:Q2996394 ?y . ?z rdf:type ontology:Q181394 . ?y rdf:type ontology:Q1057 }
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?x ) WHERE { ?z property:biological_process ?y . ?z rdf:type ontology:nutrient . ?y rdf:type ontology:metabolic_process }
[]
metabolic process nutrient
Comparative|Count over More/Less|Single entity type|Clarification
Q14907181
SYSTEM
Did you mean granulocyte macrophage colony-stimulating factor biosynthetic process ?
(c(Q181394),P682,c(Q1057))
[ANSWER]
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?x ) WHERE { ?z property:Q2996394 ?y . ?z rdf:type ontology:Q181394 . ?y rdf:type ontology:Q1057 }
Did you mean granulocyte macrophage colony-stimulating factor biosynthetic process ?
granulocyte macrophage colony-stimulating factor biosynthetic process
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?x ) WHERE { ?z property:biological_process ?y . ?z rdf:type ontology:nutrient . ?y rdf:type ontology:metabolic_process }
[]
Comparative Reasoning (Count) (All)
USER
No, I meant connective tissue growth factor biosynthetic process. Could you tell me the answer for that?
(c(Q181394),P682,c(Q1057))
Q14865941
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
[]
SYSTEM
71
Q14864889 Q14907628 Q14913194 Q22274727 Q22251129 Q14905693 Q14860777 Q21134382 Q21097138 Q14819379 Q21759902 Q133895 Q21157940 Q21116483 Q14863351 Q21102358 Q21114210 Q14907178 Q14880758 Q21761098 Q14762260 Q21100626 Q14913439 Q14916189 Q14349667 Q14349764 Q21159531 Q898365 Q22274640 Q22279483 Q21119973 Q14907180 Q14905125 Q21096256 Q14863432 Q14902250 Q21124879 Q14909347 Q15313450 Q179924 Q21101220 Q21095286 Q14863986 Q14358591 Q838181 Q21116485 Q14859896 Q21103172 Q22276072 Q14914233 Q14897831 Q14645736 Q14864262 Q14859628 Q14819787 Q22274791 Q14819781 Q22279537 Q22283508 Q14327719 Q22279533 Q21124620 Q14860507 Q21112195 Q14890104 Q14864417 Q14864414 Q21759328 Q900386 Q14912265 Q21760838
(c(Q181394),P682,c(Q1057))
[ANSWER]
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?x ) WHERE { ?z property:Q2996394 ?y . ?z rdf:type ontology:Q181394 . ?y rdf:type ontology:Q1057 }
cellular aromatic compound metabolic process multicellular organism metabolic process cellular ketone body metabolic process secondary metabolic process proteolysis in other organism translational initiation hormone biosynthetic process cofactor metabolic process cellular aldehyde metabolic process one-carbon metabolic process carbon fixation tricarboxylic acid cycle nitrobenzene metabolic process lymphotoxin A biosynthetic process signal transduction by protein phosphorylation sulfur compound metabolic process regulation of translational initiation by eIF2 alpha dephosphorylation interleukin-2 biosynthetic process nucleobase-containing compound metabolic process photosynthesis carbohydrate metabolic process peptidyl-lysine modification to peptidyl-hypusine organophosphate metabolic process organic acid metabolic process lipid metabolic process oxidation-reduction process selenium compound metabolic process glycosylation cellular biosynthetic process cellular macromolecule metabolic process oxygen metabolic process interleukin-13 biosynthetic process neurotransmitter metabolic process cellular carbohydrate metabolic process reactive oxygen species metabolic process telomere maintenance via semi-conservative replication interleukin-8 biosynthetic process flavonoid metabolic process methylation-dependent chromatin silencing bioluminescence wax biosynthetic process amyloid fibril formation hormone catabolic process xenobiotic metabolic process respiratory burst interleukin-6 biosynthetic process cellular amino acid metabolic process DNA protection glycosyl compound metabolic process phosphatidic acid metabolic process isotype switching thyroid hormone metabolic process protein metabolic process cellular lipid metabolic process peptide hormone processing organic cyclic compound metabolic process generation of precursor metabolites and energy viral RNA genome replication IRES-dependent viral translational initiation small molecule metabolic process transposon integration transposition, DNA-mediated receptor internalization patched ligand maturation toxin metabolic process heterocycle metabolic process drug metabolic process cellular catabolic process demethylation cellular ketone metabolic process phosphorus metabolic process
71
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?x ) WHERE { ?z property:biological_process ?y . ?z rdf:type ontology:nutrient . ?y rdf:type ontology:metabolic_process }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q27549559
P681
Q5058355
USER
Which are the cell components of End3p YNL084C ?
(Q27549559,P681,c(Q5058355))
action filter_type
action find
entity Q27549559
relation P681
type Q5058355
['Q27549559', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?d WHERE { resource:Q27549559 property:P681 ?d . ?d rdf:type ontology:Q5058355 }
End3p YNL084C
action filter_type
action find
entity End3p YNL084C
relation cell component
type cellular component
['End3p YNL084C', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?d WHERE { resource:End3p_YNL084C property:cell_component ?d . ?d rdf:type ontology:cellular_component }
[]
cellular component
Q29548 Q14864171
SYSTEM
plasma membrane, cell periphery
Q29548 Q14864171
(Q27549559,P681,c(Q5058355))
action filter_type
action find
entity Q27549559
relation P681
type Q5058355
The cell components of End3 p YNL084C are the [ANSWERS]
['Q27549559', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?d WHERE { resource:Q27549559 property:P681 ?d . ?d rdf:type ontology:Q5058355 }
plasma membrane cell periphery
The cell components of End3 p YNL084C are the plasma membrane and cell periphery
plasma membrane cell periphery
action filter_type
action find
entity End3p YNL084C
relation cell component
type cellular component
['End3p YNL084C', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?d WHERE { resource:End3p_YNL084C property:cell_component ?d . ?d rdf:type ontology:cellular_component }
[]
Simple Question (Ellipsis)
Incomplete|object parent is changed, subject and predicate remain same
Q27549559
Q15989253
USER
And which part?
(Q27549559,P681,c(Q15989253))
action filter_type
action find
entity Q27549559
relation P681
type Q15989253
['Q27549559', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?i WHERE { resource:Q27549559 property:P681 ?i . ?i rdf:type ontology:Q15989253 }
End3p YNL084C
action filter_type
action find
entity End3p YNL084C
relation cell component
type part
['End3p YNL084C', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?i WHERE { resource:End3p_YNL084C property:cell_component ?i . ?i rdf:type ontology:part }
[]
part
Q14349455 Q79899
SYSTEM
membrane, cytoplasm
Q14349455 Q79899
(Q27549559,P681,c(Q15989253))
action filter_type
action find
entity Q27549559
relation P681
type Q15989253
[ANSWERS]
['Q27549559', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?i WHERE { resource:Q27549559 property:P681 ?i . ?i rdf:type ontology:Q15989253 }
membrane cytoplasm
membrane cytoplasm
action filter_type
action find
entity End3p YNL084C
relation cell component
type part
['End3p YNL084C', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?i WHERE { resource:End3p_YNL084C property:cell_component ?i . ?i rdf:type ontology:part }
[]