Simple Question (Direct)
Simple Question
Q22135944
P702
Q863908
USER
Which gene encodes putative tonB-like membrane protein encoded within prophage    ECIAI39_1983 ?
(Q22135944,P702,c(Q863908))
action filter_type
action find
entity Q22135944
relation P702
type Q863908
['Q22135944', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?e WHERE { resource:Q22135944 property:P702 ?e . ?e rdf:type ontology:Q863908 }
putative tonB-like membrane protein encoded within prophage    ECIAI39_1983
action filter_type
action find
entity putative tonB-like membrane protein encoded within prophage    ECIAI39_1983
relation encoded by
type nucleic acid sequence
['putative tonB-like membrane protein encoded within prophage    ECIAI39_1983', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?e WHERE { resource:putative_tonB-like_membrane_protein_encoded_within_prophage____ECIAI39_1983 property:encoded_by ?e . ?e rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q22223488
SYSTEM
putative tonB-like membrane protein encoded within prophage    ECIAI39_1983
Q22223488
(Q22135944,P702,c(Q863908))
action filter_type
action find
entity Q22135944
relation P702
type Q863908
Putative tonB-like membrane protein encoded within prophage ECIAI39 1983 encodes putative tonB-like membrane protein encoded within prophage ECIAI39_1983
['Q22135944', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?e WHERE { resource:Q22135944 property:P702 ?e . ?e rdf:type ontology:Q863908 }
putative tonB-like membrane protein encoded within prophage    ECIAI39_1983
Putative tonB-like membrane protein encoded within prophage ECIAI39 1983 encodes putative tonB-like membrane protein encoded within prophage ECIAI39_1983
putative tonB-like membrane protein encoded within prophage    ECIAI39_1983
action filter_type
action find
entity putative tonB-like membrane protein encoded within prophage    ECIAI39_1983
relation encoded by
type nucleic acid sequence
['putative tonB-like membrane protein encoded within prophage    ECIAI39_1983', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?e WHERE { resource:putative_tonB-like_membrane_protein_encoded_within_prophage____ECIAI39_1983 property:encoded_by ?e . ?e rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q22135944
P688
Q863908
USER
Which nucleic acid sequence encodes putative tonB-like membrane protein encoded within prophage    ECIAI39_1983 ?
(c(Q863908),P688,Q22135944)
action filter_type
action find_reverse
entity Q22135944
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q22135944']
SELECT DISTINCT ?u WHERE { ?u property:P688 resource:Q22135944 . ?u rdf:type ontology:Q863908 }
putative tonB-like membrane protein encoded within prophage    ECIAI39_1983
action filter_type
action find_reverse
entity putative tonB-like membrane protein encoded within prophage    ECIAI39_1983
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'putative tonB-like membrane protein encoded within prophage    ECIAI39_1983']
SELECT DISTINCT ?u WHERE { ?u property:encodes resource:putative_tonB-like_membrane_protein_encoded_within_prophage____ECIAI39_1983 . ?u rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q22223488
SYSTEM
putative tonB-like membrane protein encoded within prophage    ECIAI39_1983
Q22223488
(c(Q863908),P688,Q22135944)
action filter_type
action find_reverse
entity Q22135944
relation P688
type Q863908
Putative tonB-like membrane protein encoded within prophage ECIAI39 1983 encodes putative tonB-like membrane protein encoded within prophage ECIAI39_1983
[{'concept': 'Q863908'}, 'P688', 'Q22135944']
SELECT DISTINCT ?u WHERE { ?u property:P688 resource:Q22135944 . ?u rdf:type ontology:Q863908 }
putative tonB-like membrane protein encoded within prophage    ECIAI39_1983
Putative tonB-like membrane protein encoded within prophage ECIAI39 1983 encodes putative tonB-like membrane protein encoded within prophage ECIAI39_1983
putative tonB-like membrane protein encoded within prophage    ECIAI39_1983
action filter_type
action find_reverse
entity putative tonB-like membrane protein encoded within prophage    ECIAI39_1983
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'putative tonB-like membrane protein encoded within prophage    ECIAI39_1983']
SELECT DISTINCT ?u WHERE { ?u property:encodes resource:putative_tonB-like_membrane_protein_encoded_within_prophage____ECIAI39_1983 . ?u rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q22223488
P703
Q16521
USER
Where is that nucleic acid sequence found ?
(Q22223488,P703,c(Q16521))
action filter_type
action find
entity Q22223488
relation P703
type Q16521
['Q22223488', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?z WHERE { resource:Q22223488 property:P703 ?z . ?z rdf:type ontology:Q16521 }
putative tonB-like membrane protein encoded within prophage    ECIAI39_1983
action filter_type
action find
entity putative tonB-like membrane protein encoded within prophage    ECIAI39_1983
relation found in taxon
type taxon
['putative tonB-like membrane protein encoded within prophage    ECIAI39_1983', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?z WHERE { resource:putative_tonB-like_membrane_protein_encoded_within_prophage____ECIAI39_1983 property:found_in_taxon ?z . ?z rdf:type ontology:taxon }
[]
taxon
Q21102933
SYSTEM
Escherichia coli IAI39
Q21102933
(Q22223488,P703,c(Q16521))
action filter_type
action find
entity Q22223488
relation P703
type Q16521
That nucleic acid sequence is found in [ANSWER]
['Q22223488', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?z WHERE { resource:Q22223488 property:P703 ?z . ?z rdf:type ontology:Q16521 }
Escherichia coli IAI39
That nucleic acid sequence is found in Escherichia coli IAI39
Escherichia coli IAI39
action filter_type
action find
entity putative tonB-like membrane protein encoded within prophage    ECIAI39_1983
relation found in taxon
type taxon
['putative tonB-like membrane protein encoded within prophage    ECIAI39_1983', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?z WHERE { resource:putative_tonB-like_membrane_protein_encoded_within_prophage____ECIAI39_1983 property:found_in_taxon ?z . ?z rdf:type ontology:taxon }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q23387846
Q16521
USER
And also tell me about pili retraction protein PilT    THEYE_A0073?
(Q23387846,P703,c(Q16521))
action filter_type
action find
entity Q23387846
relation P703
type Q16521
['Q23387846', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?d WHERE { resource:Q23387846 property:P703 ?d . ?d rdf:type ontology:Q16521 }
pili retraction protein PilT    THEYE_A0073
action filter_type
action find
entity pili retraction protein PilT    THEYE_A0073
relation found in taxon
type taxon
['pili retraction protein PilT    THEYE_A0073', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?d WHERE { resource:pili_retraction_protein_PilT____THEYE_A0073 property:found_in_taxon ?d . ?d rdf:type ontology:taxon }
[]
taxon
Q23309243
SYSTEM
Thermodesulfovibrio yellowstonii DSM 11347
Q23309243
(Q23387846,P703,c(Q16521))
action filter_type
action find
entity Q23387846
relation P703
type Q16521
[ANSWER]
['Q23387846', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?d WHERE { resource:Q23387846 property:P703 ?d . ?d rdf:type ontology:Q16521 }
Thermodesulfovibrio yellowstonii DSM 11347
Thermodesulfovibrio yellowstonii DSM 11347
action filter_type
action find
entity pili retraction protein PilT    THEYE_A0073
relation found in taxon
type taxon
['pili retraction protein PilT    THEYE_A0073', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?d WHERE { resource:pili_retraction_protein_PilT____THEYE_A0073 property:found_in_taxon ?d . ?d rdf:type ontology:taxon }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q22135944
P681
Q5058355
USER
Which is the cell component of putative tonB-like membrane protein encoded within prophage    ECIAI39_1983 ?
(Q22135944,P681,c(Q5058355))
action filter_type
action find
entity Q22135944
relation P681
type Q5058355
['Q22135944', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?j WHERE { resource:Q22135944 property:P681 ?j . ?j rdf:type ontology:Q5058355 }
putative tonB-like membrane protein encoded within prophage    ECIAI39_1983
action filter_type
action find
entity putative tonB-like membrane protein encoded within prophage    ECIAI39_1983
relation cell component
type cellular component
['putative tonB-like membrane protein encoded within prophage    ECIAI39_1983', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?j WHERE { resource:putative_tonB-like_membrane_protein_encoded_within_prophage____ECIAI39_1983 property:cell_component ?j . ?j rdf:type ontology:cellular_component }
[]
cellular component
Q29548
SYSTEM
plasma membrane
Q29548
(Q22135944,P681,c(Q5058355))
action filter_type
action find
entity Q22135944
relation P681
type Q5058355
The [ANSWER] is the cell component of putative tonB-like membrane protein encoded within prophage ECIAI39_1983
['Q22135944', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?j WHERE { resource:Q22135944 property:P681 ?j . ?j rdf:type ontology:Q5058355 }
plasma membrane
The plasma membrane is the cell component of putative tonB-like membrane protein encoded within prophage ECIAI39_1983
plasma membrane
action filter_type
action find
entity putative tonB-like membrane protein encoded within prophage    ECIAI39_1983
relation cell component
type cellular component
['putative tonB-like membrane protein encoded within prophage    ECIAI39_1983', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?j WHERE { resource:putative_tonB-like_membrane_protein_encoded_within_prophage____ECIAI39_1983 property:cell_component ?j . ?j rdf:type ontology:cellular_component }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q21494661
Q5058355
USER
And how about Kallikrein-1?
(Q21494661,P681,c(Q5058355))
action filter_type
action find
entity Q21494661
relation P681
type Q5058355
['Q21494661', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?a WHERE { resource:Q21494661 property:P681 ?a . ?a rdf:type ontology:Q5058355 }
Kallikrein-1
action filter_type
action find
entity Kallikrein-1
relation cell component
type cellular component
['Kallikrein-1', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?a WHERE { resource:Kallikrein-1 property:cell_component ?a . ?a rdf:type ontology:cellular_component }
[]
cellular component
Q2914458 Q420927
SYSTEM
extracellular space, protein complex
Q2914458 Q420927
(Q21494661,P681,c(Q5058355))
action filter_type
action find
entity Q21494661
relation P681
type Q5058355
[ANSWERS]
['Q21494661', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?a WHERE { resource:Q21494661 property:P681 ?a . ?a rdf:type ontology:Q5058355 }
extracellular space protein complex
extracellular space protein complex
action filter_type
action find
entity Kallikrein-1
relation cell component
type cellular component
['Kallikrein-1', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?a WHERE { resource:Kallikrein-1 property:cell_component ?a . ?a rdf:type ontology:cellular_component }
[]
Verification (Boolean) (All)
Verification|one entity, multiple entities (as object) referred indirectly
Q21761007
P681
Q181394
USER
Do cbb3-type cytochrome C oxidase subunit I    PA1557 have those ones as cell component ?
(Q21761007,P681,Q2914458) (Q21761007,P681,Q420927)
action is_in
entity prev_answer
action find
entity Q21761007
relation P681
['Q21761007', 'P681', 'Q2914458'] ['Q21761007', 'P681', 'Q420927']
ASK WHERE { resource:Q21761007 property:P681 ?v . VALUES ( ?v ) { ( resource:Q2914458 ) ( resource:Q420927 ) } }
cbb3-type cytochrome C oxidase subunit I    PA1557
action is_in
entity prev_answer
action find
entity cbb3-type cytochrome C oxidase subunit I    PA1557
relation cell component
['cbb3-type cytochrome C oxidase subunit I    PA1557', 'cell component', 'extracellular space'] ['cbb3-type cytochrome C oxidase subunit I    PA1557', 'cell component', 'protein complex']
ASK WHERE { resource:cbb3-type_cytochrome_C_oxidase_subunit_I____PA1557 property:cell_component ?v . VALUES ( ?v ) { ( resource:extracellular_space ) ( resource:protein_complex ) } }
[]
nutrient
SYSTEM
NO
(Q21761007,P681,Q2914458) (Q21761007,P681,Q420927)
action is_in
entity prev_answer
action find
entity Q21761007
relation P681
[ANSWER]
['Q21761007', 'P681', 'Q2914458'] ['Q21761007', 'P681', 'Q420927']
ASK WHERE { resource:Q21761007 property:P681 ?v . VALUES ( ?v ) { ( resource:Q2914458 ) ( resource:Q420927 ) } }
No
action is_in
entity prev_answer
action find
entity cbb3-type cytochrome C oxidase subunit I    PA1557
relation cell component
['cbb3-type cytochrome C oxidase subunit I    PA1557', 'cell component', 'extracellular space'] ['cbb3-type cytochrome C oxidase subunit I    PA1557', 'cell component', 'protein complex']
ASK WHERE { resource:cbb3-type_cytochrome_C_oxidase_subunit_I____PA1557 property:cell_component ?v . VALUES ( ?v ) { ( resource:extracellular_space ) ( resource:protein_complex ) } }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q24787466
Q15989253
USER
And also tell me about Tyrosine-protein kinase, receptor class II, conserved site?
(Q24787466,P361,c(Q15989253))
action filter_type
action find
entity Q24787466
relation P361
type Q15989253
['Q24787466', 'P361', {'concept': 'Q15989253'}]
SELECT DISTINCT ?o WHERE { ?o rdf:type ontology:Q15989253 . resource:Q24787466 property:P361 ?o }
Tyrosine-protein kinase, receptor class II, conserved site
action filter_type
action find
entity Tyrosine-protein kinase, receptor class II, conserved site
relation part of
type part
['Tyrosine-protein kinase, receptor class II, conserved site', 'part of', {'concept': 'part'}]
SELECT DISTINCT ?o WHERE { ?o rdf:type ontology:part . resource:Tyrosine-protein_kinase,_receptor_class_II,_conserved_site property:part_of ?o }
[]
part
Q24726164 Q24768234 Q24740842
SYSTEM
Protein kinase-like domain, Protein kinase domain, Serine-threonine/tyrosine-protein kinase catalytic domain
Q24719835 Q24768234 Q24726164 Q24740842
(Q24787466,P361,c(Q15989253))
action filter_type
action find
entity Q24787466
relation P361
type Q15989253
[ANSWERS]
['Q24787466', 'P361', {'concept': 'Q15989253'}]
SELECT DISTINCT ?o WHERE { ?o rdf:type ontology:Q15989253 . resource:Q24787466 property:P361 ?o }
Tyrosine-protein kinase, catalytic domain Protein kinase domain Protein kinase-like domain Serine-threonine/tyrosine-protein kinase catalytic domain
Protein kinase-like domain Protein kinase domain Serine-threonine/tyrosine-protein kinase catalytic domain
action filter_type
action find
entity Tyrosine-protein kinase, receptor class II, conserved site
relation part of
type part
['Tyrosine-protein kinase, receptor class II, conserved site', 'part of', {'concept': 'part'}]
SELECT DISTINCT ?o WHERE { ?o rdf:type ontology:part . resource:Tyrosine-protein_kinase,_receptor_class_II,_conserved_site property:part_of ?o }
[]