Simple Question (Direct)
Simple Question
Q21988745
P702
Q863908
USER
What encodes NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 ?
(Q21988745,P702,c(Q863908))
action filter_type
action find
entity Q21988745
relation P702
type Q863908
['Q21988745', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?p WHERE { resource:Q21988745 property:P702 ?p . ?p rdf:type ontology:Q863908 }
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
action filter_type
action find
entity NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
relation encoded by
type nucleic acid sequence
['NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?p WHERE { resource:NADH_dehydrogenase_[ubiquinone]_1_alpha_subcomplex_subunit_2 property:encoded_by ?p . ?p rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18252594
SYSTEM
Ndufa2
Q18252594
(Q21988745,P702,c(Q863908))
action filter_type
action find
entity Q21988745
relation P702
type Q863908
[ANSWER] encodes NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
['Q21988745', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?p WHERE { resource:Q21988745 property:P702 ?p . ?p rdf:type ontology:Q863908 }
Ndufa2
Ndufa2 encodes NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
Ndufa2
action filter_type
action find
entity NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
relation encoded by
type nucleic acid sequence
['NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?p WHERE { resource:NADH_dehydrogenase_[ubiquinone]_1_alpha_subcomplex_subunit_2 property:encoded_by ?p . ?p rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18252594
P684
Q863908
USER
What is the name of the species that has that one as its orthologous gene ?
(c(Q863908),P684,Q18252594)
action filter_type
action find
entity Q18252594
relation P684
type Q863908
[{'concept': 'Q863908'}, 'P684', 'Q18252594']
SELECT DISTINCT ?r WHERE { resource:Q18252594 property:P684 ?r . ?r rdf:type ontology:Q863908 }
Ndufa2
action filter_type
action find
entity Ndufa2
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'Ndufa2']
SELECT DISTINCT ?r WHERE { resource:Ndufa2 property:ortholog ?r . ?r rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18029898
SYSTEM
NDUFA2
Q18029898
(c(Q863908),P684,Q18252594)
action filter_type
action find
entity Q18252594
relation P684
type Q863908
The name of the species that has that one as its orthologous gene is the [ANSWER]
[{'concept': 'Q863908'}, 'P684', 'Q18252594']
SELECT DISTINCT ?r WHERE { resource:Q18252594 property:P684 ?r . ?r rdf:type ontology:Q863908 }
NDUFA2
The name of the species that has that one as its orthologous gene is the NDUFA2
NDUFA2
action filter_type
action find
entity Ndufa2
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'Ndufa2']
SELECT DISTINCT ?r WHERE { resource:Ndufa2 property:ortholog ?r . ?r rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, subject is indirect
Q18029898 Q24277523
P688
Q181394
USER
Does that nucleic acid sequence encode hypothetical protein    O3K_23340 ?
(Q18029898,P688,Q24277523)
action is_in
entity Q24277523
action find
entity Q18029898
relation P688
['Q18029898', 'P688', 'Q24277523']
ASK WHERE { resource:Q18029898 property:P688 resource:Q24277523 }
NDUFA2 hypothetical protein    O3K_23340
action is_in
entity hypothetical protein    O3K_23340
action find
entity NDUFA2
relation encodes
['NDUFA2', 'encodes', 'hypothetical protein    O3K_23340']
ASK WHERE { resource:NDUFA2 property:encodes resource:hypothetical_protein____O3K_23340 }
[]
nutrient
SYSTEM
NO
(Q18029898,P688,Q24277523)
action is_in
entity Q24277523
action find
entity Q18029898
relation P688
[ANSWER]
['Q18029898', 'P688', 'Q24277523']
ASK WHERE { resource:Q18029898 property:P688 resource:Q24277523 }
No
action is_in
entity hypothetical protein    O3K_23340
action find
entity NDUFA2
relation encodes
['NDUFA2', 'encodes', 'hypothetical protein    O3K_23340']
ASK WHERE { resource:NDUFA2 property:encodes resource:hypothetical_protein____O3K_23340 }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q21988745 Q24776808
P681
Q15989253
USER
Is Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic the cell component of NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 ?
(Q21988745,P681,Q24776808)
action is_in
entity Q24776808
action find
entity Q21988745
relation P681
['Q21988745', 'P681', 'Q24776808']
ASK WHERE { resource:Q21988745 property:P681 resource:Q24776808 }
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic
action is_in
entity Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic
action find
entity NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
relation cell component
['NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2', 'cell component', 'Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic']
ASK WHERE { resource:NADH_dehydrogenase_[ubiquinone]_1_alpha_subcomplex_subunit_2 property:cell_component resource:Aspartyl/Glutamyl-tRNA(Gln)_amidotransferase,_subunit_B/E,_catalytic }
[]
part
SYSTEM
NO
(Q21988745,P681,Q24776808)
action is_in
entity Q24776808
action find
entity Q21988745
relation P681
[ANSWER]
['Q21988745', 'P681', 'Q24776808']
ASK WHERE { resource:Q21988745 property:P681 resource:Q24776808 }
No
action is_in
entity Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic
action find
entity NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
relation cell component
['NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2', 'cell component', 'Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic']
ASK WHERE { resource:NADH_dehydrogenase_[ubiquinone]_1_alpha_subcomplex_subunit_2 property:cell_component resource:Aspartyl/Glutamyl-tRNA(Gln)_amidotransferase,_subunit_B/E,_catalytic }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q18252594 Q23605675
P688
Q181394
USER
Does Ndufa2 encode glyoxalase/bleomycin resistance protein/dioxygenase    Smed_0586 ?
(Q18252594,P688,Q23605675)
action is_in
entity Q23605675
action find
entity Q18252594
relation P688
['Q18252594', 'P688', 'Q23605675']
ASK WHERE { resource:Q18252594 property:P688 resource:Q23605675 }
Ndufa2 glyoxalase/bleomycin resistance protein/dioxygenase    Smed_0586
action is_in
entity glyoxalase/bleomycin resistance protein/dioxygenase    Smed_0586
action find
entity Ndufa2
relation encodes
['Ndufa2', 'encodes', 'glyoxalase/bleomycin resistance protein/dioxygenase    Smed_0586']
ASK WHERE { resource:Ndufa2 property:encodes resource:glyoxalase/bleomycin_resistance_protein/dioxygenase____Smed_0586 }
[]
nutrient
SYSTEM
NO
(Q18252594,P688,Q23605675)
action is_in
entity Q23605675
action find
entity Q18252594
relation P688
[ANSWER]
['Q18252594', 'P688', 'Q23605675']
ASK WHERE { resource:Q18252594 property:P688 resource:Q23605675 }
No
action is_in
entity glyoxalase/bleomycin resistance protein/dioxygenase    Smed_0586
action find
entity Ndufa2
relation encodes
['Ndufa2', 'encodes', 'glyoxalase/bleomycin resistance protein/dioxygenase    Smed_0586']
ASK WHERE { resource:Ndufa2 property:encodes resource:glyoxalase/bleomycin_resistance_protein/dioxygenase____Smed_0586 }
[]
Logical Reasoning (All)
Logical|Intersection|Multiple_Relation
Q83310 Q21988745
P703 P688
Q863908
USER
Which nucleic acid sequences encodes NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 and are found in the taxon Mus musculus ?
AND((c(Q863908),P688,Q21988745), (c(Q863908),P703,Q83310))
action filter_type
action intersection
action find_reverse
entity Q21988745
relation P688
action find_reverse
entity Q83310
relation P703
type Q863908
{'AND': [[{'concept': 'Q863908'}, 'P688', 'Q21988745'], [{'concept': 'Q863908'}, 'P703', 'Q83310']]}
SELECT DISTINCT ?k WHERE { ?k property:P703 resource:Q83310 . ?k property:P688 resource:Q21988745 . ?k rdf:type ontology:Q863908 }
Mus musculus NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
action filter_type
action intersection
action find_reverse
entity NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
relation encodes
action find_reverse
entity Mus musculus
relation found in taxon
type nucleic acid sequence
{'AND': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2'], [{'concept': 'nucleic acid sequence'}, 'found in taxon', 'Mus musculus']]}
SELECT DISTINCT ?k WHERE { ?k property:found_in_taxon resource:Mus_musculus . ?k property:encodes resource:NADH_dehydrogenase_[ubiquinone]_1_alpha_subcomplex_subunit_2 . ?k rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18252594
SYSTEM
Ndufa2
Q18252594
AND((c(Q863908),P688,Q21988745), (c(Q863908),P703,Q83310))
action filter_type
action intersection
action find_reverse
entity Q21988745
relation P688
action find_reverse
entity Q83310
relation P703
type Q863908
[ANSWER] encodes NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 and are found in the taxon Mus musculus
{'AND': [[{'concept': 'Q863908'}, 'P688', 'Q21988745'], [{'concept': 'Q863908'}, 'P703', 'Q83310']]}
SELECT DISTINCT ?k WHERE { ?k property:P703 resource:Q83310 . ?k property:P688 resource:Q21988745 . ?k rdf:type ontology:Q863908 }
Ndufa2
Ndufa2 encodes NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 and are found in the taxon Mus musculus
Ndufa2
action filter_type
action intersection
action find_reverse
entity NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
relation encodes
action find_reverse
entity Mus musculus
relation found in taxon
type nucleic acid sequence
{'AND': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2'], [{'concept': 'nucleic acid sequence'}, 'found in taxon', 'Mus musculus']]}
SELECT DISTINCT ?k WHERE { ?k property:found_in_taxon resource:Mus_musculus . ?k property:encodes resource:NADH_dehydrogenase_[ubiquinone]_1_alpha_subcomplex_subunit_2 . ?k rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q18252594 Q21988745
P702
Q181394
USER
Is NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 encoded by that nucleic acid sequence ?
(Q21988745,P702,Q18252594)
action is_in
entity Q18252594
action find
entity Q21988745
relation P702
['Q21988745', 'P702', 'Q18252594']
ASK WHERE { resource:Q21988745 property:P702 resource:Q18252594 }
Ndufa2 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
action is_in
entity Ndufa2
action find
entity NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
relation encoded by
['NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2', 'encoded by', 'Ndufa2']
ASK WHERE { resource:NADH_dehydrogenase_[ubiquinone]_1_alpha_subcomplex_subunit_2 property:encoded_by resource:Ndufa2 }
[]
nutrient
SYSTEM
YES
(Q21988745,P702,Q18252594)
action is_in
entity Q18252594
action find
entity Q21988745
relation P702
[ANSWER]
['Q21988745', 'P702', 'Q18252594']
ASK WHERE { resource:Q21988745 property:P702 resource:Q18252594 }
Yes
action is_in
entity Ndufa2
action find
entity NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
relation encoded by
['NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2', 'encoded by', 'Ndufa2']
ASK WHERE { resource:NADH_dehydrogenase_[ubiquinone]_1_alpha_subcomplex_subunit_2 property:encoded_by resource:Ndufa2 }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q22229095 Q18252594
P688
Q181394
USER
Which nutrients are encoded by Ndufa2 or DNA-directed RNA polymerase subunit beta    Rv0667 ?
OR((Q18252594,P688,c(Q181394)), (Q22229095,P688,c(Q181394)))
action filter_type
action union
action find
entity Q18252594
relation P688
action find
entity Q22229095
relation P688
type Q181394
{'OR': [['Q18252594', 'P688', {'concept': 'Q181394'}], ['Q22229095', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:Q181394 . { { resource:Q22229095 property:P688 ?b } UNION { resource:Q18252594 property:P688 ?b } } }
DNA-directed RNA polymerase subunit beta    Rv0667 Ndufa2
action filter_type
action union
action find
entity Ndufa2
relation encodes
action find
entity DNA-directed RNA polymerase subunit beta    Rv0667
relation encodes
type nutrient
{'OR': [['Ndufa2', 'encodes', {'concept': 'nutrient'}], ['DNA-directed RNA polymerase subunit beta    Rv0667', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:nutrient . { { resource:DNA-directed_RNA_polymerase_subunit_beta____Rv0667 property:encodes ?b } UNION { resource:Ndufa2 property:encodes ?b } } }
[]
nutrient
Q21988745 Q22233663
SYSTEM
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2, DNA-directed RNA polymerase subunit beta    Rv0667
Q21988745 Q22233663
OR((Q18252594,P688,c(Q181394)), (Q22229095,P688,c(Q181394)))
action filter_type
action union
action find
entity Q18252594
relation P688
action find
entity Q22229095
relation P688
type Q181394
[ANSWERS]
{'OR': [['Q18252594', 'P688', {'concept': 'Q181394'}], ['Q22229095', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:Q181394 . { { resource:Q22229095 property:P688 ?b } UNION { resource:Q18252594 property:P688 ?b } } }
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 DNA-directed RNA polymerase subunit beta    Rv0667
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 and DNA-directed RNA polymerase subunit beta Rv0667 are encoded by Ndufa2 or DNA-directed RNA polymerase subunit beta Rv0667
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 DNA-directed RNA polymerase subunit beta    Rv0667
action filter_type
action union
action find
entity Ndufa2
relation encodes
action find
entity DNA-directed RNA polymerase subunit beta    Rv0667
relation encodes
type nutrient
{'OR': [['Ndufa2', 'encodes', {'concept': 'nutrient'}], ['DNA-directed RNA polymerase subunit beta    Rv0667', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:nutrient . { { resource:DNA-directed_RNA_polymerase_subunit_beta____Rv0667 property:encodes ?b } UNION { resource:Ndufa2 property:encodes ?b } } }
[]
Simple Question (Coreferenced)
Simple Question|Mult. Entity
Q21988745 Q22233663
P681
Q15989253
USER
Which are the cell components of those nutrients ?
(Q21988745,P681,c(Q15989253)) (Q22233663,P681,c(Q15989253))
action filter_type
action find
entity prev_answer
relation P681
type Q15989253
['Q21988745', 'P681', {'concept': 'Q15989253'}] ['Q22233663', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?l WHERE { ?e property:P681 ?l . VALUES ( ?e ) { ( resource:Q21988745 ) ( resource:Q22233663 ) } . ?l rdf:type ontology:Q15989253 }
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 DNA-directed RNA polymerase subunit beta    Rv0667
action filter_type
action find
entity prev_answer
relation cell component
type part
['NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2', 'cell component', {'concept': 'part'}] ['DNA-directed RNA polymerase subunit beta    Rv0667', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?l WHERE { ?e property:cell_component ?l . VALUES ( ?e ) { ( resource:NADH_dehydrogenase_[ubiquinone]_1_alpha_subcomplex_subunit_2 ) ( resource:DNA-directed_RNA_polymerase_subunit_beta____Rv0667 ) } . ?l rdf:type ontology:part }
[]
part
Q14349455 Q39572 Q128700
SYSTEM
membrane, mitochondrion, cell wall
Q14349455 Q39572 Q128700
(Q21988745,P681,c(Q15989253)) (Q22233663,P681,c(Q15989253))
action filter_type
action find
entity prev_answer
relation P681
type Q15989253
The cell components of those nutrients are plasma [ANSWERS]
['Q21988745', 'P681', {'concept': 'Q15989253'}] ['Q22233663', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?l WHERE { ?e property:P681 ?l . VALUES ( ?e ) { ( resource:Q21988745 ) ( resource:Q22233663 ) } . ?l rdf:type ontology:Q15989253 }
membrane mitochondrion cell wall
The cell components of those nutrients are plasma membrane, mitochondrion and cell wall
membrane mitochondrion cell wall
action filter_type
action find
entity prev_answer
relation cell component
type part
['NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2', 'cell component', {'concept': 'part'}] ['DNA-directed RNA polymerase subunit beta    Rv0667', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?l WHERE { ?e property:cell_component ?l . VALUES ( ?e ) { ( resource:NADH_dehydrogenase_[ubiquinone]_1_alpha_subcomplex_subunit_2 ) ( resource:DNA-directed_RNA_polymerase_subunit_beta____Rv0667 ) } . ?l rdf:type ontology:part }
[]