Simple Question (Direct)
Simple Question
Q23602145
P703
Q16521
USER
Where is Two-component system sensor histidine kinase RprX    FP1827 found ?
(Q23602145,P703,c(Q16521))
action filter_type
action find
entity Q23602145
relation P703
type Q16521
['Q23602145', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?m WHERE { resource:Q23602145 property:P703 ?m . ?m rdf:type ontology:Q16521 }
Two-component system sensor histidine kinase RprX    FP1827
action filter_type
action find
entity Two-component system sensor histidine kinase RprX    FP1827
relation found in taxon
type taxon
['Two-component system sensor histidine kinase RprX    FP1827', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?m WHERE { resource:Two-component_system_sensor_histidine_kinase_RprX____FP1827 property:found_in_taxon ?m . ?m rdf:type ontology:taxon }
[]
taxon
Q21398021
SYSTEM
Flavobacterium psychrophilum JIP02/86
Q21398021
(Q23602145,P703,c(Q16521))
action filter_type
action find
entity Q23602145
relation P703
type Q16521
[ANSWER]
['Q23602145', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?m WHERE { resource:Q23602145 property:P703 ?m . ?m rdf:type ontology:Q16521 }
Flavobacterium psychrophilum JIP02/86
Flavobacterium psychrophilum JIP02/86
action filter_type
action find
entity Two-component system sensor histidine kinase RprX    FP1827
relation found in taxon
type taxon
['Two-component system sensor histidine kinase RprX    FP1827', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?m WHERE { resource:Two-component_system_sensor_histidine_kinase_RprX____FP1827 property:found_in_taxon ?m . ?m rdf:type ontology:taxon }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23602145
P681
Q15989253
USER
What is a component of that nutrient ?
(Q21398021,P681,c(Q15989253))
action filter_type
action find
entity Q23602145
relation P681
type Q15989253
['Q21398021', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?x WHERE { resource:Q23602145 property:P681 ?x . ?x rdf:type ontology:Q15989253 }
Two-component system sensor histidine kinase RprX    FP1827
action filter_type
action find
entity Two-component system sensor histidine kinase RprX    FP1827
relation cell component
type part
['Flavobacterium psychrophilum JIP02/86', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?x WHERE { resource:Two-component_system_sensor_histidine_kinase_RprX____FP1827 property:cell_component ?x . ?x rdf:type ontology:part }
[]
part
Q14349455
SYSTEM
membrane
Q14349455
(Q21398021,P681,c(Q15989253))
action filter_type
action find
entity Q23602145
relation P681
type Q15989253
[ANSWER]
['Q21398021', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?x WHERE { resource:Q23602145 property:P681 ?x . ?x rdf:type ontology:Q15989253 }
membrane
membrane
action filter_type
action find
entity Two-component system sensor histidine kinase RprX    FP1827
relation cell component
type part
['Flavobacterium psychrophilum JIP02/86', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?x WHERE { resource:Two-component_system_sensor_histidine_kinase_RprX____FP1827 property:cell_component ?x . ?x rdf:type ontology:part }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q14349455 Q23429310
P681
Q181394
USER
Does methyl-accepting chemotaxis protein    AHA_1039 have that part as its cell component ?
(Q23429310,P681,Q14349455)
action is_in
entity Q14349455
action find
entity Q23429310
relation P681
['Q23429310', 'P681', 'Q14349455']
ASK WHERE { resource:Q23429310 property:P681 resource:Q14349455 }
membrane methyl-accepting chemotaxis protein    AHA_1039
action is_in
entity membrane
action find
entity methyl-accepting chemotaxis protein    AHA_1039
relation cell component
['methyl-accepting chemotaxis protein    AHA_1039', 'cell component', 'membrane']
ASK WHERE { resource:methyl-accepting_chemotaxis_protein____AHA_1039 property:cell_component resource:membrane }
[]
nutrient
SYSTEM
YES
(Q23429310,P681,Q14349455)
action is_in
entity Q14349455
action find
entity Q23429310
relation P681
[ANSWER]
['Q23429310', 'P681', 'Q14349455']
ASK WHERE { resource:Q23429310 property:P681 resource:Q14349455 }
Yes
action is_in
entity membrane
action find
entity methyl-accepting chemotaxis protein    AHA_1039
relation cell component
['methyl-accepting chemotaxis protein    AHA_1039', 'cell component', 'membrane']
ASK WHERE { resource:methyl-accepting_chemotaxis_protein____AHA_1039 property:cell_component resource:membrane }
[]
Logical Reasoning (All)
Logical|Intersection|Single_Relation
Q27746793 Q23602145
P681
Q5058355
USER
Which cellular components are the cell components of Two-component system sensor histidine kinase RprX    FP1827 and histidine kinase    MSMEG_0993 ?
AND((Q23602145,P681,c(Q5058355)), (Q27746793,P681,c(Q5058355)))
action filter_type
action intersection
action find
entity Q23602145
relation P681
action find
entity Q27746793
relation P681
type Q5058355
{'AND': [['Q23602145', 'P681', {'concept': 'Q5058355'}], ['Q27746793', 'P681', {'concept': 'Q5058355'}]]}
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:Q5058355 . resource:Q23602145 property:P681 ?j . resource:Q27746793 property:P681 ?j }
histidine kinase    MSMEG_0993 Two-component system sensor histidine kinase RprX    FP1827
action filter_type
action intersection
action find
entity Two-component system sensor histidine kinase RprX    FP1827
relation cell component
action find
entity histidine kinase    MSMEG_0993
relation cell component
type cellular component
{'AND': [['Two-component system sensor histidine kinase RprX    FP1827', 'cell component', {'concept': 'cellular component'}], ['histidine kinase    MSMEG_0993', 'cell component', {'concept': 'cellular component'}]]}
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:cellular_component . resource:Two-component_system_sensor_histidine_kinase_RprX____FP1827 property:cell_component ?j . resource:histidine_kinase____MSMEG_0993 property:cell_component ?j }
[]
cellular component
Q3824358
SYSTEM
intracellular
Q3824358
AND((Q23602145,P681,c(Q5058355)), (Q27746793,P681,c(Q5058355)))
action filter_type
action intersection
action find
entity Q23602145
relation P681
action find
entity Q27746793
relation P681
type Q5058355
[ANSWER]
{'AND': [['Q23602145', 'P681', {'concept': 'Q5058355'}], ['Q27746793', 'P681', {'concept': 'Q5058355'}]]}
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:Q5058355 . resource:Q23602145 property:P681 ?j . resource:Q27746793 property:P681 ?j }
intracellular
intracellular
action filter_type
action intersection
action find
entity Two-component system sensor histidine kinase RprX    FP1827
relation cell component
action find
entity histidine kinase    MSMEG_0993
relation cell component
type cellular component
{'AND': [['Two-component system sensor histidine kinase RprX    FP1827', 'cell component', {'concept': 'cellular component'}], ['histidine kinase    MSMEG_0993', 'cell component', {'concept': 'cellular component'}]]}
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:cellular_component . resource:Two-component_system_sensor_histidine_kinase_RprX____FP1827 property:cell_component ?j . resource:histidine_kinase____MSMEG_0993 property:cell_component ?j }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P361
Q5058355 Q15989253 Q5058355
USER
How many cellular components are a portion of exactly 2 cellular components and parts ?
(c(Q5058355),P361,c(Q5058355)|c(Q15989253))
action count
action equal
action union
action find_tuple_counts
relation P361
type Q5058355
type Q5058355
action find_tuple_counts
relation P361
type Q5058355
type Q15989253
value 2
[{'concept': 'Q5058355'}, 'P361', [{'concept': 'Q5058355'}, {'concept': 'Q15989253'}]]
SELECT DISTINCT ( COUNT ( ?s ) AS ?h ) WHERE { { SELECT DISTINCT ( COUNT ( ?v ) AS ?m ) ?s WHERE { { ?s property:P361 ?v . ?s rdf:type ontology:Q5058355 . ?v rdf:type ontology:Q5058355 } UNION { ?v rdf:type ontology:Q15989253 . ?s rdf:type ontology:Q5058355 . ?s property:P361 ?v } } GROUP BY ?s } . FILTER ( ?m = 2 ) }
action count
action equal
action union
action find_tuple_counts
relation part of
type cellular component
type cellular component
action find_tuple_counts
relation part of
type cellular component
type part
value 2
[{'concept': 'cellular component'}, 'part of', [{'concept': 'cellular component'}, {'concept': 'part'}]]
SELECT DISTINCT ( COUNT ( ?s ) AS ?h ) WHERE { { SELECT DISTINCT ( COUNT ( ?v ) AS ?m ) ?s WHERE { { ?s property:part_of ?v . ?s rdf:type ontology:cellular_component . ?v rdf:type ontology:cellular_component } UNION { ?v rdf:type ontology:part . ?s rdf:type ontology:cellular_component . ?s property:part_of ?v } } GROUP BY ?s } . FILTER ( ?m = 2 ) }
[]
cellular component part cellular component
SYSTEM
5
Q22329451 Q21107992 Q22329159 Q22327531 Q22327518
(c(Q5058355),P361,c(Q5058355)|c(Q15989253))
action count
action equal
action union
action find_tuple_counts
relation P361
type Q5058355
type Q5058355
action find_tuple_counts
relation P361
type Q5058355
type Q15989253
value 2
[ANSWER]
[{'concept': 'Q5058355'}, 'P361', [{'concept': 'Q5058355'}, {'concept': 'Q15989253'}]]
SELECT DISTINCT ( COUNT ( ?s ) AS ?h ) WHERE { { SELECT DISTINCT ( COUNT ( ?v ) AS ?m ) ?s WHERE { { ?s property:P361 ?v . ?s rdf:type ontology:Q5058355 . ?v rdf:type ontology:Q5058355 } UNION { ?v rdf:type ontology:Q15989253 . ?s rdf:type ontology:Q5058355 . ?s property:P361 ?v } } GROUP BY ?s } . FILTER ( ?m = 2 ) }
basolateral part of cell ER ubiquitin ligase complex ventral disc microtubule array clathrin coat of synaptic vesicle plasma membrane region
5
action count
action equal
action union
action find_tuple_counts
relation part of
type cellular component
type cellular component
action find_tuple_counts
relation part of
type cellular component
type part
value 2
[{'concept': 'cellular component'}, 'part of', [{'concept': 'cellular component'}, {'concept': 'part'}]]
SELECT DISTINCT ( COUNT ( ?s ) AS ?h ) WHERE { { SELECT DISTINCT ( COUNT ( ?v ) AS ?m ) ?s WHERE { { ?s property:part_of ?v . ?s rdf:type ontology:cellular_component . ?v rdf:type ontology:cellular_component } UNION { ?v rdf:type ontology:part . ?s rdf:type ontology:cellular_component . ?s property:part_of ?v } } GROUP BY ?s } . FILTER ( ?m = 2 ) }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23602145
P682
Q1057
USER
What is the metabolic process that Two-component system sensor histidine kinase RprX    FP1827 is involved in ?
(Q23602145,P682,c(Q1057))
action filter_type
action find
entity Q23602145
relation P682
type Q1057
['Q23602145', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?o WHERE { resource:Q23602145 property:P682 ?o . ?o rdf:type ontology:Q1057 }
Two-component system sensor histidine kinase RprX    FP1827
action filter_type
action find
entity Two-component system sensor histidine kinase RprX    FP1827
relation biological process
type metabolic process
['Two-component system sensor histidine kinase RprX    FP1827', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?o WHERE { resource:Two-component_system_sensor_histidine_kinase_RprX____FP1827 property:biological_process ?o . ?o rdf:type ontology:metabolic_process }
[]
metabolic process
Q14863351
SYSTEM
signal transduction by protein phosphorylation
Q14863351
(Q23602145,P682,c(Q1057))
action filter_type
action find
entity Q23602145
relation P682
type Q1057
[ANSWER]
['Q23602145', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?o WHERE { resource:Q23602145 property:P682 ?o . ?o rdf:type ontology:Q1057 }
signal transduction by protein phosphorylation
signal transduction by protein phosphorylation
action filter_type
action find
entity Two-component system sensor histidine kinase RprX    FP1827
relation biological process
type metabolic process
['Two-component system sensor histidine kinase RprX    FP1827', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?o WHERE { resource:Two-component_system_sensor_histidine_kinase_RprX____FP1827 property:biological_process ?o . ?o rdf:type ontology:metabolic_process }
[]
Logical Reasoning (All)
Logical|Intersection|Single_Relation|Incomplete
Q24101664 Q23602145
P682
Q1057
USER
And also two component sensor kinase    NGR_c07610
AND((Q23602145,P682,c(Q1057)), (Q24101664,P682,c(Q1057)))
action filter_type
action intersection
action find
entity Q23602145
relation P682
action find
entity Q24101664
relation P682
type Q1057
{'AND': [['Q23602145', 'P682', {'concept': 'Q1057'}], ['Q24101664', 'P682', {'concept': 'Q1057'}]]}
SELECT DISTINCT ?o WHERE { resource:Q24101664 property:P682 ?o . resource:Q23602145 property:P682 ?o . ?o rdf:type ontology:Q1057 }
two component sensor kinase    NGR_c07610 Two-component system sensor histidine kinase RprX    FP1827
action filter_type
action intersection
action find
entity Two-component system sensor histidine kinase RprX    FP1827
relation biological process
action find
entity two component sensor kinase    NGR_c07610
relation biological process
type metabolic process
{'AND': [['Two-component system sensor histidine kinase RprX    FP1827', 'biological process', {'concept': 'metabolic process'}], ['two component sensor kinase    NGR_c07610', 'biological process', {'concept': 'metabolic process'}]]}
SELECT DISTINCT ?o WHERE { resource:two_component_sensor_kinase____NGR_c07610 property:biological_process ?o . resource:Two-component_system_sensor_histidine_kinase_RprX____FP1827 property:biological_process ?o . ?o rdf:type ontology:metabolic_process }
[]
metabolic process
Q14863351
SYSTEM
signal transduction by protein phosphorylation
Q14863351
AND((Q23602145,P682,c(Q1057)), (Q24101664,P682,c(Q1057)))
action filter_type
action intersection
action find
entity Q23602145
relation P682
action find
entity Q24101664
relation P682
type Q1057
[ANSWER]
{'AND': [['Q23602145', 'P682', {'concept': 'Q1057'}], ['Q24101664', 'P682', {'concept': 'Q1057'}]]}
SELECT DISTINCT ?o WHERE { resource:Q24101664 property:P682 ?o . resource:Q23602145 property:P682 ?o . ?o rdf:type ontology:Q1057 }
signal transduction by protein phosphorylation
signal transduction by protein phosphorylation
action filter_type
action intersection
action find
entity Two-component system sensor histidine kinase RprX    FP1827
relation biological process
action find
entity two component sensor kinase    NGR_c07610
relation biological process
type metabolic process
{'AND': [['Two-component system sensor histidine kinase RprX    FP1827', 'biological process', {'concept': 'metabolic process'}], ['two component sensor kinase    NGR_c07610', 'biological process', {'concept': 'metabolic process'}]]}
SELECT DISTINCT ?o WHERE { resource:two_component_sensor_kinase____NGR_c07610 property:biological_process ?o . resource:Two-component_system_sensor_histidine_kinase_RprX____FP1827 property:biological_process ?o . ?o rdf:type ontology:metabolic_process }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type
Q24101664
P702
Q863908
USER
How many nucleic acid sequences encodes two component sensor kinase    NGR_c07610 ?
(Q24101664,P702,c(Q863908))
action count
action filter_type
action find
entity Q24101664
relation P702
type Q863908
['Q24101664', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ( COUNT ( ?s ) AS ?u ) WHERE { resource:Q24101664 property:P702 ?s . ?s rdf:type ontology:Q863908 }
two component sensor kinase    NGR_c07610
action count
action filter_type
action find
entity two component sensor kinase    NGR_c07610
relation encoded by
type nucleic acid sequence
['two component sensor kinase    NGR_c07610', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ( COUNT ( ?s ) AS ?u ) WHERE { resource:two_component_sensor_kinase____NGR_c07610 property:encoded_by ?s . ?s rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
SYSTEM
1
Q23314069
(Q24101664,P702,c(Q863908))
action count
action filter_type
action find
entity Q24101664
relation P702
type Q863908
[ANSWER]
['Q24101664', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ( COUNT ( ?s ) AS ?u ) WHERE { resource:Q24101664 property:P702 ?s . ?s rdf:type ontology:Q863908 }
two component sensor kinase    NGR_c07610
1
action count
action filter_type
action find
entity two component sensor kinase    NGR_c07610
relation encoded by
type nucleic acid sequence
['two component sensor kinase    NGR_c07610', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ( COUNT ( ?s ) AS ?u ) WHERE { resource:two_component_sensor_kinase____NGR_c07610 property:encoded_by ?s . ?s rdf:type ontology:nucleic_acid_sequence }
[]
Quantitative Reasoning (Count) (All)
Incomplete count-based ques
Q24108090
Q863908
USER
And also tell me about hypothetical protein    SMa1197?
(Q24108090,P702,c(Q863908))
action count
action filter_type
action find
entity Q24108090
relation P702
type Q863908
['Q24108090', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?j ) WHERE { resource:Q24108090 property:P702 ?y . ?y rdf:type ontology:Q863908 }
hypothetical protein    SMa1197
action count
action filter_type
action find
entity hypothetical protein    SMa1197
relation encoded by
type nucleic acid sequence
['hypothetical protein    SMa1197', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?j ) WHERE { resource:hypothetical_protein____SMa1197 property:encoded_by ?y . ?y rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
SYSTEM
1
(Q24108090,P702,c(Q863908))
action count
action filter_type
action find
entity Q24108090
relation P702
type Q863908
[ANSWER]
['Q24108090', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?j ) WHERE { resource:Q24108090 property:P702 ?y . ?y rdf:type ontology:Q863908 }
1
action count
action filter_type
action find
entity hypothetical protein    SMa1197
relation encoded by
type nucleic acid sequence
['hypothetical protein    SMa1197', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?j ) WHERE { resource:hypothetical_protein____SMa1197 property:encoded_by ?y . ?y rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q24108090
P688
Q863908
USER
Which nucleic acid sequence encodes hypothetical protein    SMa1197 ?
(c(Q863908),P688,Q24108090)
action filter_type
action find_reverse
entity Q24108090
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q24108090']
SELECT DISTINCT ?i WHERE { ?i property:P688 resource:Q24108090 . ?i rdf:type ontology:Q863908 }
hypothetical protein    SMa1197
action filter_type
action find_reverse
entity hypothetical protein    SMa1197
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'hypothetical protein    SMa1197']
SELECT DISTINCT ?i WHERE { ?i property:encodes resource:hypothetical_protein____SMa1197 . ?i rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23165366
SYSTEM
hypothetical protein    SMa1197
Q23165366
(c(Q863908),P688,Q24108090)
action filter_type
action find_reverse
entity Q24108090
relation P688
type Q863908
[ANSWER]
[{'concept': 'Q863908'}, 'P688', 'Q24108090']
SELECT DISTINCT ?i WHERE { ?i property:P688 resource:Q24108090 . ?i rdf:type ontology:Q863908 }
hypothetical protein    SMa1197
hypothetical protein    SMa1197
action filter_type
action find_reverse
entity hypothetical protein    SMa1197
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'hypothetical protein    SMa1197']
SELECT DISTINCT ?i WHERE { ?i property:encodes resource:hypothetical_protein____SMa1197 . ?i rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q23165366 Q24108090
P688
Q181394
USER
Does hypothetical protein    SMa1197 encode hypothetical protein    SMa1197 ?
(Q23165366,P688,Q24108090)
action is_in
entity Q24108090
action find
entity Q23165366
relation P688
['Q23165366', 'P688', 'Q24108090']
ASK WHERE { resource:Q23165366 property:P688 resource:Q24108090 }
hypothetical protein    SMa1197 hypothetical protein    SMa1197
action is_in
entity hypothetical protein    SMa1197
action find
entity hypothetical protein    SMa1197
relation encodes
['hypothetical protein    SMa1197', 'encodes', 'hypothetical protein    SMa1197']
ASK WHERE { resource:hypothetical_protein____SMa1197 property:encodes resource:hypothetical_protein____SMa1197 }
[]
nutrient
SYSTEM
YES
(Q23165366,P688,Q24108090)
action is_in
entity Q24108090
action find
entity Q23165366
relation P688
[ANSWER]
['Q23165366', 'P688', 'Q24108090']
ASK WHERE { resource:Q23165366 property:P688 resource:Q24108090 }
Yes
action is_in
entity hypothetical protein    SMa1197
action find
entity hypothetical protein    SMa1197
relation encodes
['hypothetical protein    SMa1197', 'encodes', 'hypothetical protein    SMa1197']
ASK WHERE { resource:hypothetical_protein____SMa1197 property:encodes resource:hypothetical_protein____SMa1197 }
[]