Simple Question (Direct)
Simple Question
Q14908136
P702
Q863908
USER
Which nucleic acid sequence encodes Neurotrophin-4 ?
(Q14908136,P702,c(Q863908))
action filter_type
action find
entity Q14908136
relation P702
type Q863908
['Q14908136', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?f WHERE { ?f rdf:type ontology:Q863908 . resource:Q14908136 property:P702 ?f }
Neurotrophin-4
action filter_type
action find
entity Neurotrophin-4
relation encoded by
type nucleic acid sequence
['Neurotrophin-4', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?f WHERE { ?f rdf:type ontology:nucleic_acid_sequence . resource:Neurotrophin-4 property:encoded_by ?f }
[]
nucleic acid sequence
Q14908135
SYSTEM
Ntf5
Q14908135
(Q14908136,P702,c(Q863908))
action filter_type
action find
entity Q14908136
relation P702
type Q863908
[ANSWER] encodes Neurotrophin-4
['Q14908136', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?f WHERE { ?f rdf:type ontology:Q863908 . resource:Q14908136 property:P702 ?f }
Ntf5
Ntf5 encodes Neurotrophin-4
Ntf5
action filter_type
action find
entity Neurotrophin-4
relation encoded by
type nucleic acid sequence
['Neurotrophin-4', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?f WHERE { ?f rdf:type ontology:nucleic_acid_sequence . resource:Neurotrophin-4 property:encoded_by ?f }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q14908135
P688
Q181394
USER
What does that nucleic acid sequence encode ?
(Q14908135,P688,c(Q181394))
action filter_type
action find
entity Q14908135
relation P688
type Q181394
['Q14908135', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?x WHERE { resource:Q14908135 property:P688 ?x . ?x rdf:type ontology:Q181394 }
Ntf5
action filter_type
action find
entity Ntf5
relation encodes
type nutrient
['Ntf5', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?x WHERE { resource:Ntf5 property:encodes ?x . ?x rdf:type ontology:nutrient }
[]
nutrient
Q14908136
SYSTEM
Neurotrophin-4
Q14908136
(Q14908135,P688,c(Q181394))
action filter_type
action find
entity Q14908135
relation P688
type Q181394
That nucleic acid sequence encodes [ANSWER]
['Q14908135', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?x WHERE { resource:Q14908135 property:P688 ?x . ?x rdf:type ontology:Q181394 }
Neurotrophin-4
That nucleic acid sequence encodes Neurotrophin-4
Neurotrophin-4
action filter_type
action find
entity Ntf5
relation encodes
type nutrient
['Ntf5', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?x WHERE { resource:Ntf5 property:encodes ?x . ?x rdf:type ontology:nutrient }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q14908136
P681
Q15989253
USER
Which part is a component of that nutrient ?
(Q14908136,P681,c(Q15989253))
action filter_type
action find
entity Q14908136
relation P681
type Q15989253
['Q14908136', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?m WHERE { resource:Q14908136 property:P681 ?m . ?m rdf:type ontology:Q15989253 }
Neurotrophin-4
action filter_type
action find
entity Neurotrophin-4
relation cell component
type part
['Neurotrophin-4', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?m WHERE { resource:Neurotrophin-4 property:cell_component ?m . ?m rdf:type ontology:part }
[]
part
Q14645596
SYSTEM
extracellular region
Q14645596
(Q14908136,P681,c(Q15989253))
action filter_type
action find
entity Q14908136
relation P681
type Q15989253
[ANSWER] is a component of that nutrient
['Q14908136', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?m WHERE { resource:Q14908136 property:P681 ?m . ?m rdf:type ontology:Q15989253 }
extracellular region
Extracellular region is a component of that nutrient
extracellular region
action filter_type
action find
entity Neurotrophin-4
relation cell component
type part
['Neurotrophin-4', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?m WHERE { resource:Neurotrophin-4 property:cell_component ?m . ?m rdf:type ontology:part }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation|Incomplete
Q21111869 Q14908136
P681
Q15989253
USER
Or Calmodulin-like protein 6?
OR((Q14908136,P681,c(Q15989253)), (Q21111869,P681,c(Q15989253)))
action filter_type
action union
action find
entity Q14908136
relation P681
action find
entity Q21111869
relation P681
type Q15989253
{'OR': [['Q14908136', 'P681', {'concept': 'Q15989253'}], ['Q21111869', 'P681', {'concept': 'Q15989253'}]]}
SELECT DISTINCT ?j WHERE { { { resource:Q14908136 property:P681 ?j } UNION { resource:Q21111869 property:P681 ?j } } . ?j rdf:type ontology:Q15989253 }
Calmodulin-like protein 6 Neurotrophin-4
action filter_type
action union
action find
entity Neurotrophin-4
relation cell component
action find
entity Calmodulin-like protein 6
relation cell component
type part
{'OR': [['Neurotrophin-4', 'cell component', {'concept': 'part'}], ['Calmodulin-like protein 6', 'cell component', {'concept': 'part'}]]}
SELECT DISTINCT ?j WHERE { { { resource:Neurotrophin-4 property:cell_component ?j } UNION { resource:Calmodulin-like_protein_6 property:cell_component ?j } } . ?j rdf:type ontology:part }
[]
part
Q79899 Q40260 Q14645596
SYSTEM
cytoplasm, nucleus, extracellular region
Q79899 Q40260 Q14645596
OR((Q14908136,P681,c(Q15989253)), (Q21111869,P681,c(Q15989253)))
action filter_type
action union
action find
entity Q14908136
relation P681
action find
entity Q21111869
relation P681
type Q15989253
[ANSWERS]
{'OR': [['Q14908136', 'P681', {'concept': 'Q15989253'}], ['Q21111869', 'P681', {'concept': 'Q15989253'}]]}
SELECT DISTINCT ?j WHERE { { { resource:Q14908136 property:P681 ?j } UNION { resource:Q21111869 property:P681 ?j } } . ?j rdf:type ontology:Q15989253 }
cytoplasm nucleus extracellular region
cytoplasm nucleus extracellular region
action filter_type
action union
action find
entity Neurotrophin-4
relation cell component
action find
entity Calmodulin-like protein 6
relation cell component
type part
{'OR': [['Neurotrophin-4', 'cell component', {'concept': 'part'}], ['Calmodulin-like protein 6', 'cell component', {'concept': 'part'}]]}
SELECT DISTINCT ?j WHERE { { { resource:Neurotrophin-4 property:cell_component ?j } UNION { resource:Calmodulin-like_protein_6 property:cell_component ?j } } . ?j rdf:type ontology:part }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q14908135
P684
Q863908
USER
Which nucleic acid sequence is an orthologous gene for Ntf5 ?
(Q14908135,P684,c(Q863908))
action filter_type
action find
entity Q14908135
relation P684
type Q863908
['Q14908135', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?d WHERE { resource:Q14908135 property:P684 ?d . ?d rdf:type ontology:Q863908 }
Ntf5
action filter_type
action find
entity Ntf5
relation ortholog
type nucleic acid sequence
['Ntf5', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?d WHERE { resource:Ntf5 property:ortholog ?d . ?d rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q14908134
SYSTEM
NTF4
Q14908134
(Q14908135,P684,c(Q863908))
action filter_type
action find
entity Q14908135
relation P684
type Q863908
[ANSWER] is an orthologous gene for Ntf5
['Q14908135', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?d WHERE { resource:Q14908135 property:P684 ?d . ?d rdf:type ontology:Q863908 }
NTF4
NTF4 is an orthologous gene for Ntf5
NTF4
action filter_type
action find
entity Ntf5
relation ortholog
type nucleic acid sequence
['Ntf5', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?d WHERE { resource:Ntf5 property:ortholog ?d . ?d rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q14908134
P703
Q16521
USER
Which taxon is that nucleic acid sequence found in ?
(Q14908134,P703,c(Q16521))
action filter_type
action find
entity Q14908134
relation P703
type Q16521
['Q14908134', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?y WHERE { resource:Q14908134 property:P703 ?y . ?y rdf:type ontology:Q16521 }
NTF4
action filter_type
action find
entity NTF4
relation found in taxon
type taxon
['NTF4', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?y WHERE { resource:NTF4 property:found_in_taxon ?y . ?y rdf:type ontology:taxon }
[]
taxon
Q15978631
SYSTEM
Homo sapiens
Q15978631
(Q14908134,P703,c(Q16521))
action filter_type
action find
entity Q14908134
relation P703
type Q16521
That nucleic acid sequence is found in [ANSWER]
['Q14908134', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?y WHERE { resource:Q14908134 property:P703 ?y . ?y rdf:type ontology:Q16521 }
Homo sapiens
That nucleic acid sequence is found in Homo sapiens
Homo sapiens
action filter_type
action find
entity NTF4
relation found in taxon
type taxon
['NTF4', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?y WHERE { resource:NTF4 property:found_in_taxon ?y . ?y rdf:type ontology:taxon }
[]
Comparative Reasoning (All)
Comparative|More/Less|Single entity type
Q163351
P566
Q82799 Q16521
USER
Which names are a basionyms of less number of taxons than Potamogeton pectinatus ?
(c(Q16521),P566,c(Q82799))
action less
action find_reverse_tuple_counts
relation P566
type Q82799
type Q16521
action count
action filter_type
action find_reverse
entity Q163351
relation P566
type Q16521
[{'concept': 'Q16521'}, 'P566', {'concept': 'Q82799'}]
SELECT DISTINCT ?j WHERE { { SELECT DISTINCT ?j ( COUNT ( ?d ) AS ?v ) WHERE { ?d rdf:type ontology:Q16521 . ?j rdf:type ontology:Q82799 . ?d property:P566 ?j } GROUP BY ?j } . { SELECT DISTINCT ( COUNT ( ?k ) AS ?t ) WHERE { ?k property:P566 resource:Q163351 . ?k rdf:type ontology:Q16521 } } . FILTER ( ?v < ?t ) }
Potamogeton pectinatus
action less
action find_reverse_tuple_counts
relation basionym
type name
type taxon
action count
action filter_type
action find_reverse
entity Potamogeton pectinatus
relation basionym
type taxon
[{'concept': 'taxon'}, 'basionym', {'concept': 'name'}]
SELECT DISTINCT ?j WHERE { { SELECT DISTINCT ?j ( COUNT ( ?d ) AS ?v ) WHERE { ?d rdf:type ontology:taxon . ?j rdf:type ontology:name . ?d property:basionym ?j } GROUP BY ?j } . { SELECT DISTINCT ( COUNT ( ?k ) AS ?t ) WHERE { ?k property:basionym resource:Potamogeton_pectinatus . ?k rdf:type ontology:taxon } } . FILTER ( ?v < ?t ) }
[]
name taxon
Q15629400 Q12954907 Q22915049
SYSTEM
Dimorphotheca ecklonis, Polygonum bistorta, Polianthes michoacana
Q12954907 Q22915049 Q7226458 Q159107 Q157851 Q15250904 Q16484730 Q7170299 Q11099680 Q15629400 Q134609
(c(Q16521),P566,c(Q82799))
action less
action find_reverse_tuple_counts
relation P566
type Q82799
type Q16521
action count
action filter_type
action find_reverse
entity Q163351
relation P566
type Q16521
[ANSWERS] are a basionyms of less number of taxons than Potamogeton pectinatus
[{'concept': 'Q16521'}, 'P566', {'concept': 'Q82799'}]
SELECT DISTINCT ?j WHERE { { SELECT DISTINCT ?j ( COUNT ( ?d ) AS ?v ) WHERE { ?d rdf:type ontology:Q16521 . ?j rdf:type ontology:Q82799 . ?d property:P566 ?j } GROUP BY ?j } . { SELECT DISTINCT ( COUNT ( ?k ) AS ?t ) WHERE { ?k property:P566 resource:Q163351 . ?k rdf:type ontology:Q16521 } } . FILTER ( ?v < ?t ) }
Polygonum bistorta Polianthes michoacana Polygonum cespitosum Hieracium aurantiacum Glaux maritima Polygonum manshuriense Abutilon striatum Persicaria affinis Polygonum perfoliatum Dimorphotheca ecklonis Cynara scolymus
Dimorphotheca ecklonis, Polygonum bistorta and Polianthes michoacana are a basionyms of less number of taxons than Potamogeton pectinatus
Dimorphotheca ecklonis Polygonum bistorta Polianthes michoacana
action less
action find_reverse_tuple_counts
relation basionym
type name
type taxon
action count
action filter_type
action find_reverse
entity Potamogeton pectinatus
relation basionym
type taxon
[{'concept': 'taxon'}, 'basionym', {'concept': 'name'}]
SELECT DISTINCT ?j WHERE { { SELECT DISTINCT ?j ( COUNT ( ?d ) AS ?v ) WHERE { ?d rdf:type ontology:taxon . ?j rdf:type ontology:name . ?d property:basionym ?j } GROUP BY ?j } . { SELECT DISTINCT ( COUNT ( ?k ) AS ?t ) WHERE { ?k property:basionym resource:Potamogeton_pectinatus . ?k rdf:type ontology:taxon } } . FILTER ( ?v < ?t ) }
[]
Comparative Reasoning (All)
Comparative|More/Less|Single entity type|Incomplete
Q17234595
P566
Q82799 Q16521
USER
And how about Bassia calcarata?
(c(Q16521),P566,c(Q82799))
action less
action find_reverse_tuple_counts
relation P566
type Q82799
type Q16521
action count
action filter_type
action find_reverse
entity Q17234595
relation P566
type Q16521
[{'concept': 'Q16521'}, 'P566', {'concept': 'Q82799'}]
SELECT DISTINCT ?f WHERE { { SELECT DISTINCT ?f ( COUNT ( ?n ) AS ?y ) WHERE { ?n property:P566 ?f . ?f rdf:type ontology:Q82799 . ?n rdf:type ontology:Q16521 } GROUP BY ?f } . { SELECT DISTINCT ( COUNT ( ?h ) AS ?r ) WHERE { ?h property:P566 resource:Q17234595 . ?h rdf:type ontology:Q16521 } } . FILTER ( ?y < ?r ) }
Bassia calcarata
action less
action find_reverse_tuple_counts
relation basionym
type name
type taxon
action count
action filter_type
action find_reverse
entity Bassia calcarata
relation basionym
type taxon
[{'concept': 'taxon'}, 'basionym', {'concept': 'name'}]
SELECT DISTINCT ?f WHERE { { SELECT DISTINCT ?f ( COUNT ( ?n ) AS ?y ) WHERE { ?n property:basionym ?f . ?f rdf:type ontology:name . ?n rdf:type ontology:taxon } GROUP BY ?f } . { SELECT DISTINCT ( COUNT ( ?h ) AS ?r ) WHERE { ?h property:basionym resource:Bassia_calcarata . ?h rdf:type ontology:taxon } } . FILTER ( ?y < ?r ) }
[]
name taxon
Q15629400 Q12954907 Q22915049
SYSTEM
Dimorphotheca ecklonis, Polygonum bistorta, Polianthes michoacana
Q12954907 Q22915049 Q7226458 Q159107 Q157851 Q15250904 Q16484730 Q7170299 Q11099680 Q15629400 Q134609
(c(Q16521),P566,c(Q82799))
action less
action find_reverse_tuple_counts
relation P566
type Q82799
type Q16521
action count
action filter_type
action find_reverse
entity Q17234595
relation P566
type Q16521
[ANSWERS]
[{'concept': 'Q16521'}, 'P566', {'concept': 'Q82799'}]
SELECT DISTINCT ?f WHERE { { SELECT DISTINCT ?f ( COUNT ( ?n ) AS ?y ) WHERE { ?n property:P566 ?f . ?f rdf:type ontology:Q82799 . ?n rdf:type ontology:Q16521 } GROUP BY ?f } . { SELECT DISTINCT ( COUNT ( ?h ) AS ?r ) WHERE { ?h property:P566 resource:Q17234595 . ?h rdf:type ontology:Q16521 } } . FILTER ( ?y < ?r ) }
Polygonum bistorta Polianthes michoacana Polygonum cespitosum Hieracium aurantiacum Glaux maritima Polygonum manshuriense Abutilon striatum Persicaria affinis Polygonum perfoliatum Dimorphotheca ecklonis Cynara scolymus
Dimorphotheca ecklonis Polygonum bistorta Polianthes michoacana
action less
action find_reverse_tuple_counts
relation basionym
type name
type taxon
action count
action filter_type
action find_reverse
entity Bassia calcarata
relation basionym
type taxon
[{'concept': 'taxon'}, 'basionym', {'concept': 'name'}]
SELECT DISTINCT ?f WHERE { { SELECT DISTINCT ?f ( COUNT ( ?n ) AS ?y ) WHERE { ?n property:basionym ?f . ?f rdf:type ontology:name . ?n rdf:type ontology:taxon } GROUP BY ?f } . { SELECT DISTINCT ( COUNT ( ?h ) AS ?r ) WHERE { ?h property:basionym resource:Bassia_calcarata . ?h rdf:type ontology:taxon } } . FILTER ( ?y < ?r ) }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q181394 Q181394 Q8386
USER
How many nutrients do around 12 nutrients or drugs communicate with ?
(c(Q181394)|c(Q8386),P129,c(Q181394))
action count
action approx
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
value 12
[[{'concept': 'Q181394'}, {'concept': 'Q8386'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?j ) AS ?s ) WHERE { { SELECT DISTINCT ?j ( COUNT ( ?m ) AS ?u ) WHERE { { ?m property:P129 ?j . ?j rdf:type ontology:Q181394 . ?m rdf:type ontology:Q181394 } UNION { ?j rdf:type ontology:Q181394 . ?m rdf:type ontology:Q8386 . ?m property:P129 ?j } } GROUP BY ?j } . FILTER ( ?u = 12 ) }
action count
action approx
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
value 12
[[{'concept': 'nutrient'}, {'concept': 'drug'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?j ) AS ?s ) WHERE { { SELECT DISTINCT ?j ( COUNT ( ?m ) AS ?u ) WHERE { { ?m property:physically_interacts_with ?j . ?j rdf:type ontology:nutrient . ?m rdf:type ontology:nutrient } UNION { ?j rdf:type ontology:nutrient . ?m rdf:type ontology:drug . ?m property:physically_interacts_with ?j } } GROUP BY ?j } . FILTER ( ?u = 12 ) }
[]
nutrient nutrient drug
SYSTEM
36
Q4847910 Q2271947 Q2663095 Q21497881 Q21173164 Q21172390 Q1084878 Q415607 Q21110867 Q4847900 Q4847907 Q21116946 Q416601 Q5401858 Q5401857 Q22676679 Q2844056 Q21115334 Q21115052 Q5513985 Q21114578 Q21131500 Q2819188 Q4897175 Q21132915 Q8083989 Q21497878 Q12746120 Q21108125 Q21114582 Q21497939 Q3454531 Q21096394 Q21109359 Q5520260 Q21134814
(c(Q181394)|c(Q8386),P129,c(Q181394))
action count
action approx
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
value 12
[ANSWER]
[[{'concept': 'Q181394'}, {'concept': 'Q8386'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?j ) AS ?s ) WHERE { { SELECT DISTINCT ?j ( COUNT ( ?m ) AS ?u ) WHERE { { ?m property:P129 ?j . ?j rdf:type ontology:Q181394 . ?m rdf:type ontology:Q181394 } UNION { ?j rdf:type ontology:Q181394 . ?m rdf:type ontology:Q8386 . ?m property:P129 ?j } } GROUP BY ?j } . FILTER ( ?u = 12 ) }
Muscarinic acetylcholine receptor M2 Sodium-dependent dopamine transporter Glucocorticoid receptor G protein-activated inward rectifier potassium channel 4 Carbonic anhydrase 1 Vascular endothelial growth factor receptor 2 Peroxisome proliferator-activated receptor gamma 3-hydroxy-3-methylglutaryl-coenzyme A reductase D(1A) dopamine receptor Muscarinic acetylcholine receptor M1 Muscarinic acetylcholine receptor M4 Carbonic anhydrase 12 Androgen receptor Estrogen receptor Estrogen receptor beta Acetylcholinesterase Muscarinic acetylcholine receptor M3 Delta-type opioid receptor 5-hydroxytryptamine receptor 1F Gonadotropin-releasing hormone receptor Gamma-aminobutyric acid receptor subunit alpha-3 D(1B) dopamine receptor Type-1 angiotensin II receptor Beta-3 adrenergic receptor Carbonic anhydrase 7 Kappa-type opioid receptor G protein-activated inward rectifier potassium channel 2 Muscarinic acetylcholine receptor M5 5-hydroxytryptamine receptor 3A Gamma-aminobutyric acid receptor subunit alpha-2 5-hydroxytryptamine receptor 7 Mineralocorticoid receptor Potassium voltage-gated channel subfamily A member 5 5-hydroxytryptamine receptor 5A Gamma-aminobutyric acid receptor subunit alpha-1 Equilibrative nucleoside transporter 4
36
action count
action approx
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
value 12
[[{'concept': 'nutrient'}, {'concept': 'drug'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?j ) AS ?s ) WHERE { { SELECT DISTINCT ?j ( COUNT ( ?m ) AS ?u ) WHERE { { ?m property:physically_interacts_with ?j . ?j rdf:type ontology:nutrient . ?m rdf:type ontology:nutrient } UNION { ?j rdf:type ontology:nutrient . ?m rdf:type ontology:drug . ?m property:physically_interacts_with ?j } } GROUP BY ?j } . FILTER ( ?u = 12 ) }
[]