Simple Question (Direct)
Simple Question
Q23469325
P702
Q863908
USER
Which gene encodes GTP-dependent nucleic acid-binding protein EngD    Rru_A3748 ?
(Q23469325,P702,c(Q863908))
action filter_type
action find
entity Q23469325
relation P702
type Q863908
['Q23469325', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?t WHERE { resource:Q23469325 property:P702 ?t . ?t rdf:type ontology:Q863908 }
GTP-dependent nucleic acid-binding protein EngD    Rru_A3748
action filter_type
action find
entity GTP-dependent nucleic acid-binding protein EngD    Rru_A3748
relation encoded by
type nucleic acid sequence
['GTP-dependent nucleic acid-binding protein EngD    Rru_A3748', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?t WHERE { resource:GTP-dependent_nucleic_acid-binding_protein_EngD____Rru_A3748 property:encoded_by ?t . ?t rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23376721
SYSTEM
GTP-dependent nucleic acid-binding protein EngD    Rru_A3748
Q23376721
(Q23469325,P702,c(Q863908))
action filter_type
action find
entity Q23469325
relation P702
type Q863908
GTP-dependent nucleic acid-binding protein EngD Rru A3748 encodes GTP-dependent nucleic acid-binding protein EngD Rru_A3748
['Q23469325', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?t WHERE { resource:Q23469325 property:P702 ?t . ?t rdf:type ontology:Q863908 }
GTP-dependent nucleic acid-binding protein EngD    Rru_A3748
GTP-dependent nucleic acid-binding protein EngD Rru A3748 encodes GTP-dependent nucleic acid-binding protein EngD Rru_A3748
GTP-dependent nucleic acid-binding protein EngD    Rru_A3748
action filter_type
action find
entity GTP-dependent nucleic acid-binding protein EngD    Rru_A3748
relation encoded by
type nucleic acid sequence
['GTP-dependent nucleic acid-binding protein EngD    Rru_A3748', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?t WHERE { resource:GTP-dependent_nucleic_acid-binding_protein_EngD____Rru_A3748 property:encoded_by ?t . ?t rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23469325
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(c(Q863908),P688,Q23376721)
action filter_type
action find_reverse
entity Q23469325
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q23376721']
SELECT DISTINCT ?u WHERE { ?u property:P688 resource:Q23469325 . ?u rdf:type ontology:Q863908 }
GTP-dependent nucleic acid-binding protein EngD    Rru_A3748
action filter_type
action find_reverse
entity GTP-dependent nucleic acid-binding protein EngD    Rru_A3748
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'GTP-dependent nucleic acid-binding protein EngD    Rru_A3748']
SELECT DISTINCT ?u WHERE { ?u property:encodes resource:GTP-dependent_nucleic_acid-binding_protein_EngD____Rru_A3748 . ?u rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23376721
SYSTEM
GTP-dependent nucleic acid-binding protein EngD    Rru_A3748
Q23376721
(c(Q863908),P688,Q23376721)
action filter_type
action find_reverse
entity Q23469325
relation P688
type Q863908
The GTP-dependent nucleic acid-binding protein EngD Rru A3748 encodes that nutrient
[{'concept': 'Q863908'}, 'P688', 'Q23376721']
SELECT DISTINCT ?u WHERE { ?u property:P688 resource:Q23469325 . ?u rdf:type ontology:Q863908 }
GTP-dependent nucleic acid-binding protein EngD    Rru_A3748
The GTP-dependent nucleic acid-binding protein EngD Rru A3748 encodes that nutrient
GTP-dependent nucleic acid-binding protein EngD    Rru_A3748
action filter_type
action find_reverse
entity GTP-dependent nucleic acid-binding protein EngD    Rru_A3748
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'GTP-dependent nucleic acid-binding protein EngD    Rru_A3748']
SELECT DISTINCT ?u WHERE { ?u property:encodes resource:GTP-dependent_nucleic_acid-binding_protein_EngD____Rru_A3748 . ?u rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23469325
P703
Q631147
USER
Which infraspecific name is that nutrient found in ?
(Q23376721,P703,c(Q631147))
action filter_type
action find
entity Q23469325
relation P703
type Q631147
['Q23376721', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:Q631147 . resource:Q23469325 property:P703 ?b }
GTP-dependent nucleic acid-binding protein EngD    Rru_A3748
action filter_type
action find
entity GTP-dependent nucleic acid-binding protein EngD    Rru_A3748
relation found in taxon
type infraspecific name
['GTP-dependent nucleic acid-binding protein EngD    Rru_A3748', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:infraspecific_name . resource:GTP-dependent_nucleic_acid-binding_protein_EngD____Rru_A3748 property:found_in_taxon ?b }
[]
infraspecific name
Q21102954
SYSTEM
Rhodospirillum rubrum ATCC 11170
Q21102954
(Q23376721,P703,c(Q631147))
action filter_type
action find
entity Q23469325
relation P703
type Q631147
[ANSWER] is that nutrient found in
['Q23376721', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:Q631147 . resource:Q23469325 property:P703 ?b }
Rhodospirillum rubrum ATCC 11170
Rhodospirillum rubrum ATCC 11170 is that nutrient found in
Rhodospirillum rubrum ATCC 11170
action filter_type
action find
entity GTP-dependent nucleic acid-binding protein EngD    Rru_A3748
relation found in taxon
type infraspecific name
['GTP-dependent nucleic acid-binding protein EngD    Rru_A3748', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:infraspecific_name . resource:GTP-dependent_nucleic_acid-binding_protein_EngD____Rru_A3748 property:found_in_taxon ?b }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation|Incomplete
Q23144515 Q23469325
P703
Q631147
USER
Or L-aspartate oxidase    SDY_2815?
OR((Q23469325,P703,c(Q631147)), (Q23144515,P703,c(Q631147)))
action filter_type
action union
action find
entity Q23469325
relation P703
action find
entity Q23144515
relation P703
type Q631147
{'OR': [['Q23469325', 'P703', {'concept': 'Q631147'}], ['Q23144515', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?m WHERE { { VALUES ( ?x ) { ( resource:Q23144515 ) ( resource:Q23469325 ) } . ?x property:P703 ?m } . ?m rdf:type ontology:Q631147 }
L-aspartate oxidase    SDY_2815 GTP-dependent nucleic acid-binding protein EngD    Rru_A3748
action filter_type
action union
action find
entity GTP-dependent nucleic acid-binding protein EngD    Rru_A3748
relation found in taxon
action find
entity L-aspartate oxidase    SDY_2815
relation found in taxon
type infraspecific name
{'OR': [['GTP-dependent nucleic acid-binding protein EngD    Rru_A3748', 'found in taxon', {'concept': 'infraspecific name'}], ['L-aspartate oxidase    SDY_2815', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?m WHERE { { VALUES ( ?x ) { ( resource:L-aspartate_oxidase____SDY_2815 ) ( resource:GTP-dependent_nucleic_acid-binding_protein_EngD____Rru_A3748 ) } . ?x property:found_in_taxon ?m } . ?m rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102954 Q21102940
SYSTEM
Rhodospirillum rubrum ATCC 11170, Shigella dysenteriae Sd197
Q21102954 Q21102940
OR((Q23469325,P703,c(Q631147)), (Q23144515,P703,c(Q631147)))
action filter_type
action union
action find
entity Q23469325
relation P703
action find
entity Q23144515
relation P703
type Q631147
[ANSWERS]
{'OR': [['Q23469325', 'P703', {'concept': 'Q631147'}], ['Q23144515', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?m WHERE { { VALUES ( ?x ) { ( resource:Q23144515 ) ( resource:Q23469325 ) } . ?x property:P703 ?m } . ?m rdf:type ontology:Q631147 }
Rhodospirillum rubrum ATCC 11170 Shigella dysenteriae Sd197
Rhodospirillum rubrum ATCC 11170 Shigella dysenteriae Sd197
action filter_type
action union
action find
entity GTP-dependent nucleic acid-binding protein EngD    Rru_A3748
relation found in taxon
action find
entity L-aspartate oxidase    SDY_2815
relation found in taxon
type infraspecific name
{'OR': [['GTP-dependent nucleic acid-binding protein EngD    Rru_A3748', 'found in taxon', {'concept': 'infraspecific name'}], ['L-aspartate oxidase    SDY_2815', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?m WHERE { { VALUES ( ?x ) { ( resource:L-aspartate_oxidase____SDY_2815 ) ( resource:GTP-dependent_nucleic_acid-binding_protein_EngD____Rru_A3748 ) } . ?x property:found_in_taxon ?m } . ?m rdf:type ontology:infraspecific_name }
[]
Clarification
Comparative|Count over More/Less|Single entity type|Indirect
P703
Q631147 Q863908
USER
How many infraspecific names are greater number of nucleic acid sequences found than that infraspecific name ?
(c(Q863908),P703,c(Q631147))
[{'concept': 'Q863908'}, 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?x ) WHERE { ?z property:P703 ?y . ?z rdf:type ontology:Q863908 . ?y rdf:type ontology:Q631147 }
[{'concept': 'nucleic acid sequence'}, 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?x ) WHERE { ?z property:found_in_taxon ?y . ?z rdf:type ontology:nucleic_acid_sequence . ?y rdf:type ontology:infraspecific_name }
[]
infraspecific name nucleic acid sequence
Comparative|Count over More/Less|Single entity type|Clarification
Q21102940
SYSTEM
Did you mean Shigella dysenteriae Sd197 ?
(c(Q863908),P703,c(Q631147))
[ANSWER]
[{'concept': 'Q863908'}, 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?x ) WHERE { ?z property:P703 ?y . ?z rdf:type ontology:Q863908 . ?y rdf:type ontology:Q631147 }
Did you mean Shigella dysenteriae Sd197 ?
Shigella dysenteriae Sd197
[{'concept': 'nucleic acid sequence'}, 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?x ) WHERE { ?z property:found_in_taxon ?y . ?z rdf:type ontology:nucleic_acid_sequence . ?y rdf:type ontology:infraspecific_name }
[]
Comparative Reasoning (Count) (All)
USER
Yes
(c(Q863908),P703,c(Q631147))
[{'concept': 'Q863908'}, 'P703', {'concept': 'Q631147'}]
[{'concept': 'nucleic acid sequence'}, 'found in taxon', {'concept': 'infraspecific name'}]
[]
SYSTEM
31
Q21102993 Q21102995 Q21102996 Q21102997 Q21102998 Q27510868 Q21079489 Q21102941 Q21102947 Q21102930 Q21102924 Q21102927 Q21102986 Q21102928 Q21102918 Q21102988 Q21079490 Q21079491 Q21102944 Q21102950 Q21102953 Q23309229 Q21102972 Q21102970 Q21102971 Q21064863 Q21102931 Q21102937 Q21102934 Q21102938 Q21102939
(c(Q863908),P703,c(Q631147))
[ANSWER]
[{'concept': 'Q863908'}, 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?x ) WHERE { ?z property:P703 ?y . ?z rdf:type ontology:Q863908 . ?y rdf:type ontology:Q631147 }
Burkholderia mallei ATCC 23344 Burkholderia pseudomallei K96243 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Salmonella enterica subsp. enterica serovar Typhi str. CT18 Amycolatopsis mediterranei U32 Saccharomyces cerevisiae S288c Pseudomonas putida KT2440 Shigella flexneri 2a str. 301 Vibrio parahaemolyticus RIMD 2210633 Escherichia coli O157:H7 str. Sakai Bordetella bronchiseptica 253 Enterobacter aerogenes KCTC 2190 Mycobacterium smegmatis str. MC2 155 Enterobacter cloacae subsp. cloacae ATCC 13047 Sinorhizobium meliloti 1021 Streptomyces coelicolor A3(2) Pseudomonas syringae pv. syringae B728a Xanthomonas campestris pv. campestris str. ATCC 33913 Aeromonas hydrophila subsp. hydrophila ATCC 7966 Bacteroides fragilis YCH46 Rhodobacter sphaeroides 2.4.1 Sinorhizobium fredii NGR234 Bacillus thuringiensis serovar konkukian str. 97-27 Bacillus cereus ATCC 14579 Bacillus subtilis subsp. subtilis str. 168 Bordetella parapertussis Bpp5 Escherichia coli UMN026 Escherichia coli O104:H4 str. 2011C-3493 Escherichia coli O83:H1 str. NRG 857C Escherichia coli str. K-12 substr. MG1655 Klebsiella pneumoniae subsp. pneumoniae HS11286
31
[{'concept': 'nucleic acid sequence'}, 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?x ) WHERE { ?z property:found_in_taxon ?y . ?z rdf:type ontology:nucleic_acid_sequence . ?y rdf:type ontology:infraspecific_name }
[]
Quantitative Reasoning (Count) (All)
Incomplete count-based ques
Q23518458
Q631147
USER
And also tell me about lipoprotein    BSU09150?
(Q23518458,P703,c(Q631147))
action count
action filter_type
action find
entity Q23518458
relation P703
type Q631147
['Q23518458', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?p ) WHERE { resource:Q23518458 property:P703 ?y . ?y rdf:type ontology:Q631147 }
lipoprotein    BSU09150
action count
action filter_type
action find
entity lipoprotein    BSU09150
relation found in taxon
type infraspecific name
['lipoprotein    BSU09150', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?p ) WHERE { resource:lipoprotein____BSU09150 property:found_in_taxon ?y . ?y rdf:type ontology:infraspecific_name }
[]
infraspecific name
SYSTEM
1
(Q23518458,P703,c(Q631147))
action count
action filter_type
action find
entity Q23518458
relation P703
type Q631147
[ANSWER]
['Q23518458', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?p ) WHERE { resource:Q23518458 property:P703 ?y . ?y rdf:type ontology:Q631147 }
1
action count
action filter_type
action find
entity lipoprotein    BSU09150
relation found in taxon
type infraspecific name
['lipoprotein    BSU09150', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?p ) WHERE { resource:lipoprotein____BSU09150 property:found_in_taxon ?y . ?y rdf:type ontology:infraspecific_name }
[]