Simple Question (Direct)
Simple Question
Q23478695
P681
Q15989253
USER
Which is the cell component of hypothetical protein    SAOUHSC_01312 ?
(Q23478695,P681,c(Q15989253))
action filter_type
action find
entity Q23478695
relation P681
type Q15989253
['Q23478695', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?e WHERE { resource:Q23478695 property:P681 ?e . ?e rdf:type ontology:Q15989253 }
hypothetical protein    SAOUHSC_01312
action filter_type
action find
entity hypothetical protein    SAOUHSC_01312
relation cell component
type part
['hypothetical protein    SAOUHSC_01312', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?e WHERE { resource:hypothetical_protein____SAOUHSC_01312 property:cell_component ?e . ?e rdf:type ontology:part }
[]
part
Q14349455
SYSTEM
membrane
Q14349455
(Q23478695,P681,c(Q15989253))
action filter_type
action find
entity Q23478695
relation P681
type Q15989253
[ANSWER] is the cell component of hypothetical protein SAOUHSC_01312
['Q23478695', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?e WHERE { resource:Q23478695 property:P681 ?e . ?e rdf:type ontology:Q15989253 }
membrane
Membrane is the cell component of hypothetical protein SAOUHSC_01312
membrane
action filter_type
action find
entity hypothetical protein    SAOUHSC_01312
relation cell component
type part
['hypothetical protein    SAOUHSC_01312', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?e WHERE { resource:hypothetical_protein____SAOUHSC_01312 property:cell_component ?e . ?e rdf:type ontology:part }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23478695
P703
Q631147
USER
Which taxon does hypothetical protein    SAOUHSC_01312 belong to ?
(Q23478695,P703,c(Q631147))
action filter_type
action find
entity Q23478695
relation P703
type Q631147
['Q23478695', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?h WHERE { ?h rdf:type ontology:Q631147 . resource:Q23478695 property:P703 ?h }
hypothetical protein    SAOUHSC_01312
action filter_type
action find
entity hypothetical protein    SAOUHSC_01312
relation found in taxon
type infraspecific name
['hypothetical protein    SAOUHSC_01312', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?h WHERE { ?h rdf:type ontology:infraspecific_name . resource:hypothetical_protein____SAOUHSC_01312 property:found_in_taxon ?h }
[]
infraspecific name
Q21102956
SYSTEM
Staphylococcus aureus subsp. aureus NCTC 8325
Q21102956
(Q23478695,P703,c(Q631147))
action filter_type
action find
entity Q23478695
relation P703
type Q631147
Hypothetical protein SAOUHSC_01312 belongs to [ANSWER]
['Q23478695', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?h WHERE { ?h rdf:type ontology:Q631147 . resource:Q23478695 property:P703 ?h }
Staphylococcus aureus subsp. aureus NCTC 8325
Hypothetical protein SAOUHSC_01312 belongs to Staphylococcus aureus subsp. aureus NCTC 8325
Staphylococcus aureus subsp. aureus NCTC 8325
action filter_type
action find
entity hypothetical protein    SAOUHSC_01312
relation found in taxon
type infraspecific name
['hypothetical protein    SAOUHSC_01312', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?h WHERE { ?h rdf:type ontology:infraspecific_name . resource:hypothetical_protein____SAOUHSC_01312 property:found_in_taxon ?h }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23478695
P688
Q863908
USER
Which nucleic acid sequence encodes hypothetical protein    SAOUHSC_01312 ?
(c(Q863908),P688,Q23478695)
action filter_type
action find_reverse
entity Q23478695
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q23478695']
SELECT DISTINCT ?r WHERE { ?r property:P688 resource:Q23478695 . ?r rdf:type ontology:Q863908 }
hypothetical protein    SAOUHSC_01312
action filter_type
action find_reverse
entity hypothetical protein    SAOUHSC_01312
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'hypothetical protein    SAOUHSC_01312']
SELECT DISTINCT ?r WHERE { ?r property:encodes resource:hypothetical_protein____SAOUHSC_01312 . ?r rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23173835
SYSTEM
hypothetical protein    SAOUHSC_01312
Q23173835
(c(Q863908),P688,Q23478695)
action filter_type
action find_reverse
entity Q23478695
relation P688
type Q863908
Hypothetical protein SAOUHSC 01312 encodes hypothetical protein SAOUHSC_01312
[{'concept': 'Q863908'}, 'P688', 'Q23478695']
SELECT DISTINCT ?r WHERE { ?r property:P688 resource:Q23478695 . ?r rdf:type ontology:Q863908 }
hypothetical protein    SAOUHSC_01312
Hypothetical protein SAOUHSC 01312 encodes hypothetical protein SAOUHSC_01312
hypothetical protein    SAOUHSC_01312
action filter_type
action find_reverse
entity hypothetical protein    SAOUHSC_01312
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'hypothetical protein    SAOUHSC_01312']
SELECT DISTINCT ?r WHERE { ?r property:encodes resource:hypothetical_protein____SAOUHSC_01312 . ?r rdf:type ontology:nucleic_acid_sequence }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation|Incomplete
Q21984410 Q23478695
P688
Q863908
USER
Or Cysteine and glycine-rich protein 3?
OR((c(Q863908),P688,Q23478695), (c(Q863908),P688,Q21984410))
action filter_type
action union
action find_reverse
entity Q23478695
relation P688
action find_reverse
entity Q21984410
relation P688
type Q863908
{'OR': [[{'concept': 'Q863908'}, 'P688', 'Q23478695'], [{'concept': 'Q863908'}, 'P688', 'Q21984410']]}
SELECT DISTINCT ?v WHERE { ?v rdf:type ontology:Q863908 . { ?v property:P688 ?w . VALUES ( ?w ) { ( resource:Q23478695 ) ( resource:Q21984410 ) } } }
Cysteine and glycine-rich protein 3 hypothetical protein    SAOUHSC_01312
action filter_type
action union
action find_reverse
entity hypothetical protein    SAOUHSC_01312
relation encodes
action find_reverse
entity Cysteine and glycine-rich protein 3
relation encodes
type nucleic acid sequence
{'OR': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'hypothetical protein    SAOUHSC_01312'], [{'concept': 'nucleic acid sequence'}, 'encodes', 'Cysteine and glycine-rich protein 3']]}
SELECT DISTINCT ?v WHERE { ?v rdf:type ontology:nucleic_acid_sequence . { ?v property:encodes ?w . VALUES ( ?w ) { ( resource:hypothetical_protein____SAOUHSC_01312 ) ( resource:Cysteine_and_glycine-rich_protein_3 ) } } }
[]
nucleic acid sequence
Q23173835 Q18248566
SYSTEM
hypothetical protein    SAOUHSC_01312, Csrp3
Q23173835 Q18248566
OR((c(Q863908),P688,Q23478695), (c(Q863908),P688,Q21984410))
action filter_type
action union
action find_reverse
entity Q23478695
relation P688
action find_reverse
entity Q21984410
relation P688
type Q863908
[ANSWERS]
{'OR': [[{'concept': 'Q863908'}, 'P688', 'Q23478695'], [{'concept': 'Q863908'}, 'P688', 'Q21984410']]}
SELECT DISTINCT ?v WHERE { ?v rdf:type ontology:Q863908 . { ?v property:P688 ?w . VALUES ( ?w ) { ( resource:Q23478695 ) ( resource:Q21984410 ) } } }
hypothetical protein    SAOUHSC_01312 Csrp3
hypothetical protein    SAOUHSC_01312 Csrp3
action filter_type
action union
action find_reverse
entity hypothetical protein    SAOUHSC_01312
relation encodes
action find_reverse
entity Cysteine and glycine-rich protein 3
relation encodes
type nucleic acid sequence
{'OR': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'hypothetical protein    SAOUHSC_01312'], [{'concept': 'nucleic acid sequence'}, 'encodes', 'Cysteine and glycine-rich protein 3']]}
SELECT DISTINCT ?v WHERE { ?v rdf:type ontology:nucleic_acid_sequence . { ?v property:encodes ?w . VALUES ( ?w ) { ( resource:hypothetical_protein____SAOUHSC_01312 ) ( resource:Cysteine_and_glycine-rich_protein_3 ) } } }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q24153046 Q21984410
P702
Q863908
USER
Which nucleic acid sequences encode Cysteine and glycine-rich protein 3 or FimG protein    NRG857_21790 ?
OR((Q21984410,P702,c(Q863908)), (Q24153046,P702,c(Q863908)))
action filter_type
action union
action find
entity Q21984410
relation P702
action find
entity Q24153046
relation P702
type Q863908
{'OR': [['Q21984410', 'P702', {'concept': 'Q863908'}], ['Q24153046', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?y WHERE { { VALUES ( ?w ) { ( resource:Q21984410 ) ( resource:Q24153046 ) } . ?w property:P702 ?y } . ?y rdf:type ontology:Q863908 }
FimG protein    NRG857_21790 Cysteine and glycine-rich protein 3
action filter_type
action union
action find
entity Cysteine and glycine-rich protein 3
relation encoded by
action find
entity FimG protein    NRG857_21790
relation encoded by
type nucleic acid sequence
{'OR': [['Cysteine and glycine-rich protein 3', 'encoded by', {'concept': 'nucleic acid sequence'}], ['FimG protein    NRG857_21790', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?y WHERE { { VALUES ( ?w ) { ( resource:Cysteine_and_glycine-rich_protein_3 ) ( resource:FimG_protein____NRG857_21790 ) } . ?w property:encoded_by ?y } . ?y rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18248566 Q23102459
SYSTEM
Csrp3, FimG protein    NRG857_21790
Q18248566 Q23102459
OR((Q21984410,P702,c(Q863908)), (Q24153046,P702,c(Q863908)))
action filter_type
action union
action find
entity Q21984410
relation P702
action find
entity Q24153046
relation P702
type Q863908
[ANSWERS]
{'OR': [['Q21984410', 'P702', {'concept': 'Q863908'}], ['Q24153046', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?y WHERE { { VALUES ( ?w ) { ( resource:Q21984410 ) ( resource:Q24153046 ) } . ?w property:P702 ?y } . ?y rdf:type ontology:Q863908 }
Csrp3 FimG protein    NRG857_21790
Csrp3 and FimG protein NRG857 21790 encode Cysteine and glycine-rich protein 3 or FimG protein NRG857_21790
Csrp3 FimG protein    NRG857_21790
action filter_type
action union
action find
entity Cysteine and glycine-rich protein 3
relation encoded by
action find
entity FimG protein    NRG857_21790
relation encoded by
type nucleic acid sequence
{'OR': [['Cysteine and glycine-rich protein 3', 'encoded by', {'concept': 'nucleic acid sequence'}], ['FimG protein    NRG857_21790', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?y WHERE { { VALUES ( ?w ) { ( resource:Cysteine_and_glycine-rich_protein_3 ) ( resource:FimG_protein____NRG857_21790 ) } . ?w property:encoded_by ?y } . ?y rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Mult. Entity
Q18248566 Q23102459
P702
Q181394
USER
What are the gene that are encoded by those nucleic acid sequences ?
(c(Q181394),P702,Q18248566) (c(Q181394),P702,Q23102459)
action filter_type
action find_reverse
entity prev_answer
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q18248566'] [{'concept': 'Q181394'}, 'P702', 'Q23102459']
SELECT DISTINCT ?o WHERE { ?o rdf:type ontology:Q181394 . VALUES ( ?v ) { ( resource:Q18248566 ) ( resource:Q23102459 ) } . ?o property:P702 ?v }
Csrp3 FimG protein    NRG857_21790
action filter_type
action find_reverse
entity prev_answer
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'Csrp3'] [{'concept': 'nutrient'}, 'encoded by', 'FimG protein    NRG857_21790']
SELECT DISTINCT ?o WHERE { ?o rdf:type ontology:nutrient . VALUES ( ?v ) { ( resource:Csrp3 ) ( resource:FimG_protein____NRG857_21790 ) } . ?o property:encoded_by ?v }
[]
nutrient
Q21984410 Q24153046
SYSTEM
Cysteine and glycine-rich protein 3, FimG protein    NRG857_21790
Q21984410 Q24153046
(c(Q181394),P702,Q18248566) (c(Q181394),P702,Q23102459)
action filter_type
action find_reverse
entity prev_answer
relation P702
type Q181394
[ANSWERS]
[{'concept': 'Q181394'}, 'P702', 'Q18248566'] [{'concept': 'Q181394'}, 'P702', 'Q23102459']
SELECT DISTINCT ?o WHERE { ?o rdf:type ontology:Q181394 . VALUES ( ?v ) { ( resource:Q18248566 ) ( resource:Q23102459 ) } . ?o property:P702 ?v }
Cysteine and glycine-rich protein 3 FimG protein    NRG857_21790
The gene that are encoded by those nucleic acid sequences are Cysteine and glycine-rich protein 3 and FimG protein NRG857 21790
Cysteine and glycine-rich protein 3 FimG protein    NRG857_21790
action filter_type
action find_reverse
entity prev_answer
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'Csrp3'] [{'concept': 'nutrient'}, 'encoded by', 'FimG protein    NRG857_21790']
SELECT DISTINCT ?o WHERE { ?o rdf:type ontology:nutrient . VALUES ( ?v ) { ( resource:Csrp3 ) ( resource:FimG_protein____NRG857_21790 ) } . ?o property:encoded_by ?v }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21984410
P680
Q44424
USER
Which the chemical bonds that represents the molecular function of Cysteine and glycine-rich protein 3 ?
(Q21984410,P680,c(Q44424))
action filter_type
action find
entity Q21984410
relation P680
type Q44424
['Q21984410', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?n WHERE { resource:Q21984410 property:P680 ?n . ?n rdf:type ontology:Q44424 }
Cysteine and glycine-rich protein 3
action filter_type
action find
entity Cysteine and glycine-rich protein 3
relation molecular function
type chemical bond
['Cysteine and glycine-rich protein 3', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?n WHERE { resource:Cysteine_and_glycine-rich_protein_3 property:molecular_function ?n . ?n rdf:type ontology:chemical_bond }
[]
chemical bond
Q14633865 Q13667380
SYSTEM
zinc ion binding, metal ion binding
Q14633865 Q13667380
(Q21984410,P680,c(Q44424))
action filter_type
action find
entity Q21984410
relation P680
type Q44424
Represents The [ANSWERS]
['Q21984410', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?n WHERE { resource:Q21984410 property:P680 ?n . ?n rdf:type ontology:Q44424 }
zinc ion binding metal ion binding
Represents The zinc ion binding and metal ion binding
zinc ion binding metal ion binding
action filter_type
action find
entity Cysteine and glycine-rich protein 3
relation molecular function
type chemical bond
['Cysteine and glycine-rich protein 3', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?n WHERE { resource:Cysteine_and_glycine-rich_protein_3 property:molecular_function ?n . ?n rdf:type ontology:chemical_bond }
[]
Verification (Boolean) (All)
Verification|one entity, multiple entities (as object) referred indirectly
Q24140746
P680
Q181394
USER
Are periplasmic folding chaperone, has an inactive PPIase domain    b0441 the gene that have those chemical bonds as the molecular function ?
(Q24140746,P680,Q14633865) (Q24140746,P680,Q13667380)
action is_in
entity prev_answer
action find
entity Q24140746
relation P680
['Q24140746', 'P680', 'Q14633865'] ['Q24140746', 'P680', 'Q13667380']
ASK WHERE { resource:Q24140746 property:P680 ?k . VALUES ( ?k ) { ( resource:Q14633865 ) ( resource:Q13667380 ) } }
periplasmic folding chaperone, has an inactive PPIase domain    b0441
action is_in
entity prev_answer
action find
entity periplasmic folding chaperone, has an inactive PPIase domain    b0441
relation molecular function
['periplasmic folding chaperone, has an inactive PPIase domain    b0441', 'molecular function', 'zinc ion binding'] ['periplasmic folding chaperone, has an inactive PPIase domain    b0441', 'molecular function', 'metal ion binding']
ASK WHERE { resource:periplasmic_folding_chaperone,_has_an_inactive_PPIase_domain____b0441 property:molecular_function ?k . VALUES ( ?k ) { ( resource:zinc_ion_binding ) ( resource:metal_ion_binding ) } }
[]
nutrient
SYSTEM
NO
(Q24140746,P680,Q14633865) (Q24140746,P680,Q13667380)
action is_in
entity prev_answer
action find
entity Q24140746
relation P680
[ANSWER]
['Q24140746', 'P680', 'Q14633865'] ['Q24140746', 'P680', 'Q13667380']
ASK WHERE { resource:Q24140746 property:P680 ?k . VALUES ( ?k ) { ( resource:Q14633865 ) ( resource:Q13667380 ) } }
No
action is_in
entity prev_answer
action find
entity periplasmic folding chaperone, has an inactive PPIase domain    b0441
relation molecular function
['periplasmic folding chaperone, has an inactive PPIase domain    b0441', 'molecular function', 'zinc ion binding'] ['periplasmic folding chaperone, has an inactive PPIase domain    b0441', 'molecular function', 'metal ion binding']
ASK WHERE { resource:periplasmic_folding_chaperone,_has_an_inactive_PPIase_domain____b0441 property:molecular_function ?k . VALUES ( ?k ) { ( resource:zinc_ion_binding ) ( resource:metal_ion_binding ) } }
[]