Simple Question (Direct)
Simple Question
Q21498545
P682
Q1057
USER
Which metabolic process is Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4 involved in ?
(Q21498545,P682,c(Q1057))
action filter_type
action find
entity Q21498545
relation P682
type Q1057
['Q21498545', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?r WHERE { ?r rdf:type ontology:Q1057 . resource:Q21498545 property:P682 ?r }
Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4
action filter_type
action find
entity Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4
relation biological process
type metabolic process
['Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?r WHERE { ?r rdf:type ontology:metabolic_process . resource:Very-long-chain_(3R)-3-hydroxyacyl-CoA_dehydratase_4 property:biological_process ?r }
[]
metabolic process
Q14349667
SYSTEM
lipid metabolic process
Q14349667
(Q21498545,P682,c(Q1057))
action filter_type
action find
entity Q21498545
relation P682
type Q1057
[ANSWER] is Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4 involved in
['Q21498545', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?r WHERE { ?r rdf:type ontology:Q1057 . resource:Q21498545 property:P682 ?r }
lipid metabolic process
Lipid metabolic process is Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4 involved in
lipid metabolic process
action filter_type
action find
entity Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4
relation biological process
type metabolic process
['Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?r WHERE { ?r rdf:type ontology:metabolic_process . resource:Very-long-chain_(3R)-3-hydroxyacyl-CoA_dehydratase_4 property:biological_process ?r }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21498545
P681
Q15989253
USER
What is a component of Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4 ?
(Q21498545,P681,c(Q15989253))
action filter_type
action find
entity Q21498545
relation P681
type Q15989253
['Q21498545', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?v WHERE { resource:Q21498545 property:P681 ?v . ?v rdf:type ontology:Q15989253 }
Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4
action filter_type
action find
entity Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4
relation cell component
type part
['Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?v WHERE { resource:Very-long-chain_(3R)-3-hydroxyacyl-CoA_dehydratase_4 property:cell_component ?v . ?v rdf:type ontology:part }
[]
part
Q14349455
SYSTEM
membrane
Q14349455
(Q21498545,P681,c(Q15989253))
action filter_type
action find
entity Q21498545
relation P681
type Q15989253
A component of Very-long-chain ( 3R )-3-hydroxyacyl-CoA dehydratase 4 is a [ANSWER]
['Q21498545', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?v WHERE { resource:Q21498545 property:P681 ?v . ?v rdf:type ontology:Q15989253 }
membrane
A component of Very-long-chain ( 3R )-3-hydroxyacyl-CoA dehydratase 4 is a membrane
membrane
action filter_type
action find
entity Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4
relation cell component
type part
['Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?v WHERE { resource:Very-long-chain_(3R)-3-hydroxyacyl-CoA_dehydratase_4 property:cell_component ?v . ?v rdf:type ontology:part }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21498545
P702
Q863908
USER
Which nucleic acid sequence encodes Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4 ?
(Q21498545,P702,c(Q863908))
action filter_type
action find
entity Q21498545
relation P702
type Q863908
['Q21498545', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?n WHERE { resource:Q21498545 property:P702 ?n . ?n rdf:type ontology:Q863908 }
Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4
action filter_type
action find
entity Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4
relation encoded by
type nucleic acid sequence
['Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?n WHERE { resource:Very-long-chain_(3R)-3-hydroxyacyl-CoA_dehydratase_4 property:encoded_by ?n . ?n rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18262061
SYSTEM
Hacd4
Q18262061
(Q21498545,P702,c(Q863908))
action filter_type
action find
entity Q21498545
relation P702
type Q863908
[ANSWER] encodes Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4
['Q21498545', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?n WHERE { resource:Q21498545 property:P702 ?n . ?n rdf:type ontology:Q863908 }
Hacd4
Hacd4 encodes Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4
Hacd4
action filter_type
action find
entity Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4
relation encoded by
type nucleic acid sequence
['Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?n WHERE { resource:Very-long-chain_(3R)-3-hydroxyacyl-CoA_dehydratase_4 property:encoded_by ?n . ?n rdf:type ontology:nucleic_acid_sequence }
[]
Logical Reasoning (All)
Logical|Intersection|Multiple_Relation
Q83310 Q21498545
P703 P688
Q863908
USER
Which nucleic acid sequences encode Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4 and are found in the taxon Mus musculus ?
AND((c(Q863908),P688,Q21498545), (c(Q863908),P703,Q83310))
action filter_type
action intersection
action find_reverse
entity Q21498545
relation P688
action find_reverse
entity Q83310
relation P703
type Q863908
{'AND': [[{'concept': 'Q863908'}, 'P688', 'Q21498545'], [{'concept': 'Q863908'}, 'P703', 'Q83310']]}
SELECT DISTINCT ?j WHERE { ?j property:P703 resource:Q83310 . ?j property:P688 resource:Q21498545 . ?j rdf:type ontology:Q863908 }
Mus musculus Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4
action filter_type
action intersection
action find_reverse
entity Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4
relation encodes
action find_reverse
entity Mus musculus
relation found in taxon
type nucleic acid sequence
{'AND': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4'], [{'concept': 'nucleic acid sequence'}, 'found in taxon', 'Mus musculus']]}
SELECT DISTINCT ?j WHERE { ?j property:found_in_taxon resource:Mus_musculus . ?j property:encodes resource:Very-long-chain_(3R)-3-hydroxyacyl-CoA_dehydratase_4 . ?j rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18262061
SYSTEM
Hacd4
Q18262061
AND((c(Q863908),P688,Q21498545), (c(Q863908),P703,Q83310))
action filter_type
action intersection
action find_reverse
entity Q21498545
relation P688
action find_reverse
entity Q83310
relation P703
type Q863908
[ANSWER] encode Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4 and are found in the taxon Mus musculus
{'AND': [[{'concept': 'Q863908'}, 'P688', 'Q21498545'], [{'concept': 'Q863908'}, 'P703', 'Q83310']]}
SELECT DISTINCT ?j WHERE { ?j property:P703 resource:Q83310 . ?j property:P688 resource:Q21498545 . ?j rdf:type ontology:Q863908 }
Hacd4
Hacd4 encode Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4 and are found in the taxon Mus musculus
Hacd4
action filter_type
action intersection
action find_reverse
entity Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4
relation encodes
action find_reverse
entity Mus musculus
relation found in taxon
type nucleic acid sequence
{'AND': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4'], [{'concept': 'nucleic acid sequence'}, 'found in taxon', 'Mus musculus']]}
SELECT DISTINCT ?j WHERE { ?j property:found_in_taxon resource:Mus_musculus . ?j property:encodes resource:Very-long-chain_(3R)-3-hydroxyacyl-CoA_dehydratase_4 . ?j rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q18262061 Q21498545
P702
Q181394
USER
Is Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4 the gene that is encoded by that nucleic acid sequence ?
(Q21498545,P702,Q18262061)
action is_in
entity Q18262061
action find
entity Q21498545
relation P702
['Q21498545', 'P702', 'Q18262061']
ASK WHERE { resource:Q21498545 property:P702 resource:Q18262061 }
Hacd4 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4
action is_in
entity Hacd4
action find
entity Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4
relation encoded by
['Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4', 'encoded by', 'Hacd4']
ASK WHERE { resource:Very-long-chain_(3R)-3-hydroxyacyl-CoA_dehydratase_4 property:encoded_by resource:Hacd4 }
[]
nutrient
SYSTEM
YES
(Q21498545,P702,Q18262061)
action is_in
entity Q18262061
action find
entity Q21498545
relation P702
[ANSWER]
['Q21498545', 'P702', 'Q18262061']
ASK WHERE { resource:Q21498545 property:P702 resource:Q18262061 }
Yes
action is_in
entity Hacd4
action find
entity Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4
relation encoded by
['Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4', 'encoded by', 'Hacd4']
ASK WHERE { resource:Very-long-chain_(3R)-3-hydroxyacyl-CoA_dehydratase_4 property:encoded_by resource:Hacd4 }
[]
Verification (Boolean) (All)
Verification|3 entities, all direct, 2 are query entities
Q21498545 Q14329032 Q79927
P681
Q5058355
USER
Is endoplasmic reticulum membrane and endoplasmic reticulum a cell component of Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4 ?
(Q21498545,P681,Q14329032) (Q21498545,P681,Q79927)
action is_in
entity Q21498545
action intersection
action find_reverse
entity Q14329032
relation P681
action find_reverse
entity Q79927
relation P681
['Q21498545', 'P681', 'Q14329032'] ['Q21498545', 'P681', 'Q79927']
ASK WHERE { resource:Q21498545 property:P681 resource:Q14329032 . resource:Q21498545 property:P681 resource:Q79927 }
Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4 endoplasmic reticulum membrane endoplasmic reticulum
action is_in
entity Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4
action intersection
action find_reverse
entity endoplasmic reticulum membrane
relation cell component
action find_reverse
entity endoplasmic reticulum
relation cell component
['Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4', 'cell component', 'endoplasmic reticulum membrane'] ['Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4', 'cell component', 'endoplasmic reticulum']
ASK WHERE { resource:Very-long-chain_(3R)-3-hydroxyacyl-CoA_dehydratase_4 property:cell_component resource:endoplasmic_reticulum_membrane . resource:Very-long-chain_(3R)-3-hydroxyacyl-CoA_dehydratase_4 property:cell_component resource:endoplasmic_reticulum }
[]
cellular component
SYSTEM
YES
(Q21498545,P681,Q14329032) (Q21498545,P681,Q79927)
action is_in
entity Q21498545
action intersection
action find_reverse
entity Q14329032
relation P681
action find_reverse
entity Q79927
relation P681
[ANSWER]
['Q21498545', 'P681', 'Q14329032'] ['Q21498545', 'P681', 'Q79927']
ASK WHERE { resource:Q21498545 property:P681 resource:Q14329032 . resource:Q21498545 property:P681 resource:Q79927 }
Yes
action is_in
entity Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4
action intersection
action find_reverse
entity endoplasmic reticulum membrane
relation cell component
action find_reverse
entity endoplasmic reticulum
relation cell component
['Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4', 'cell component', 'endoplasmic reticulum membrane'] ['Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4', 'cell component', 'endoplasmic reticulum']
ASK WHERE { resource:Very-long-chain_(3R)-3-hydroxyacyl-CoA_dehydratase_4 property:cell_component resource:endoplasmic_reticulum_membrane . resource:Very-long-chain_(3R)-3-hydroxyacyl-CoA_dehydratase_4 property:cell_component resource:endoplasmic_reticulum }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q181394 Q181394 Q8386
USER
How many nutrients do atleast 17 nutrients and drugs collaborate with ?
(c(Q181394)|c(Q8386),P129,c(Q181394))
action count
action atleast
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
value 17
[[{'concept': 'Q181394'}, {'concept': 'Q8386'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?f ) AS ?r ) WHERE { { SELECT DISTINCT ( COUNT ( ?d ) AS ?o ) ?f WHERE { { ?d property:P129 ?f . ?f rdf:type ontology:Q181394 . ?d rdf:type ontology:Q181394 } UNION { ?d property:P129 ?f . ?f rdf:type ontology:Q181394 . ?d rdf:type ontology:Q8386 } } GROUP BY ?f } . FILTER ( ?o >= 17 ) }
action count
action atleast
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
value 17
[[{'concept': 'nutrient'}, {'concept': 'drug'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?f ) AS ?r ) WHERE { { SELECT DISTINCT ( COUNT ( ?d ) AS ?o ) ?f WHERE { { ?d property:physically_interacts_with ?f . ?f rdf:type ontology:nutrient . ?d rdf:type ontology:nutrient } UNION { ?d property:physically_interacts_with ?f . ?f rdf:type ontology:nutrient . ?d rdf:type ontology:drug } } GROUP BY ?f } . FILTER ( ?o >= 17 ) }
[]
nutrient nutrient drug
SYSTEM
28
Q7050954 Q309513 Q308856 Q287961 Q2663095 Q5123372 Q410142 Q288797 Q287958 Q21126810 Q4639596 Q4734884 Q4734887 Q4734886 Q21115051 Q21115052 Q415364 Q21109355 Q4734894 Q21110872 Q4734892 Q21108118 Q4734891 Q21115046 Q21115043 Q1949517 Q21109363 Q2034004
(c(Q181394)|c(Q8386),P129,c(Q181394))
action count
action atleast
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
value 17
[ANSWER]
[[{'concept': 'Q181394'}, {'concept': 'Q8386'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?f ) AS ?r ) WHERE { { SELECT DISTINCT ( COUNT ( ?d ) AS ?o ) ?f WHERE { { ?d property:P129 ?f . ?f rdf:type ontology:Q181394 . ?d rdf:type ontology:Q181394 } UNION { ?d property:P129 ?f . ?f rdf:type ontology:Q181394 . ?d rdf:type ontology:Q8386 } } GROUP BY ?f } . FILTER ( ?o >= 17 ) }
Sodium-dependent noradrenaline transporter Histamine H1 receptor D(4) dopamine receptor Beta-2 adrenergic receptor Glucocorticoid receptor Mu-type opioid receptor Sodium-dependent serotonin transporter 5-hydroxytryptamine receptor 1B Beta-1 adrenergic receptor Prostaglandin G/H synthase 1 5-hydroxytryptamine receptor 2B Alpha-1A adrenergic receptor Alpha-1D adrenergic receptor Alpha-1B adrenergic receptor 5-hydroxytryptamine receptor 1E 5-hydroxytryptamine receptor 1F Prostaglandin G/H synthase 2 5-hydroxytryptamine receptor 7 Alpha-2B adrenergic receptor D(3) dopamine receptor Alpha-2A adrenergic receptor 5-hydroxytryptamine receptor 2C Alpha-2C adrenergic receptor 5-hydroxytryptamine receptor 1D 5-hydroxytryptamine receptor 1A 5-hydroxytryptamine receptor 2A 5-hydroxytryptamine receptor 6 D(2) dopamine receptor
28
action count
action atleast
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
value 17
[[{'concept': 'nutrient'}, {'concept': 'drug'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?f ) AS ?r ) WHERE { { SELECT DISTINCT ( COUNT ( ?d ) AS ?o ) ?f WHERE { { ?d property:physically_interacts_with ?f . ?f rdf:type ontology:nutrient . ?d rdf:type ontology:nutrient } UNION { ?d property:physically_interacts_with ?f . ?f rdf:type ontology:nutrient . ?d rdf:type ontology:drug } } GROUP BY ?f } . FILTER ( ?o >= 17 ) }
[]
Logical Reasoning (All)
Logical|Intersection|Single_Relation
Q27548258 Q21498545
P681
Q5058355
USER
Which cellular components are components of Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4 and hypothetical protein YMR010W ?
AND((Q21498545,P681,c(Q5058355)), (Q27548258,P681,c(Q5058355)))
action filter_type
action intersection
action find
entity Q21498545
relation P681
action find
entity Q27548258
relation P681
type Q5058355
{'AND': [['Q21498545', 'P681', {'concept': 'Q5058355'}], ['Q27548258', 'P681', {'concept': 'Q5058355'}]]}
SELECT DISTINCT ?l WHERE { resource:Q21498545 property:P681 ?l . resource:Q27548258 property:P681 ?l . ?l rdf:type ontology:Q5058355 }
hypothetical protein YMR010W Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4
action filter_type
action intersection
action find
entity Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4
relation cell component
action find
entity hypothetical protein YMR010W
relation cell component
type cellular component
{'AND': [['Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4', 'cell component', {'concept': 'cellular component'}], ['hypothetical protein YMR010W', 'cell component', {'concept': 'cellular component'}]]}
SELECT DISTINCT ?l WHERE { resource:Very-long-chain_(3R)-3-hydroxyacyl-CoA_dehydratase_4 property:cell_component ?l . resource:hypothetical_protein_YMR010W property:cell_component ?l . ?l rdf:type ontology:cellular_component }
[]
cellular component
Q79927
SYSTEM
endoplasmic reticulum
Q79927
AND((Q21498545,P681,c(Q5058355)), (Q27548258,P681,c(Q5058355)))
action filter_type
action intersection
action find
entity Q21498545
relation P681
action find
entity Q27548258
relation P681
type Q5058355
The [ANSWER] is components of Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4 and hypothetical protein YMR010W
{'AND': [['Q21498545', 'P681', {'concept': 'Q5058355'}], ['Q27548258', 'P681', {'concept': 'Q5058355'}]]}
SELECT DISTINCT ?l WHERE { resource:Q21498545 property:P681 ?l . resource:Q27548258 property:P681 ?l . ?l rdf:type ontology:Q5058355 }
endoplasmic reticulum
The endoplasmic reticulum is components of Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4 and hypothetical protein YMR010W
endoplasmic reticulum
action filter_type
action intersection
action find
entity Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4
relation cell component
action find
entity hypothetical protein YMR010W
relation cell component
type cellular component
{'AND': [['Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4', 'cell component', {'concept': 'cellular component'}], ['hypothetical protein YMR010W', 'cell component', {'concept': 'cellular component'}]]}
SELECT DISTINCT ?l WHERE { resource:Very-long-chain_(3R)-3-hydroxyacyl-CoA_dehydratase_4 property:cell_component ?l . resource:hypothetical_protein_YMR010W property:cell_component ?l . ?l rdf:type ontology:cellular_component }
[]