Simple Question (Direct)
Simple Question
Q23449747
P702
Q863908
USER
Which nucleic acid sequence encodes probable cation efflux pump    BF2080 ?
(Q23449747,P702,c(Q863908))
action filter_type
action find
entity Q23449747
relation P702
type Q863908
['Q23449747', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?w WHERE { resource:Q23449747 property:P702 ?w . ?w rdf:type ontology:Q863908 }
probable cation efflux pump    BF2080
action filter_type
action find
entity probable cation efflux pump    BF2080
relation encoded by
type nucleic acid sequence
['probable cation efflux pump    BF2080', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?w WHERE { resource:probable_cation_efflux_pump____BF2080 property:encoded_by ?w . ?w rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23103906
SYSTEM
probable cation efflux pump    BF2080
Q23103906
(Q23449747,P702,c(Q863908))
action filter_type
action find
entity Q23449747
relation P702
type Q863908
Probable cation efflux pump BF2080 encodes probable cation efflux pump BF2080
['Q23449747', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?w WHERE { resource:Q23449747 property:P702 ?w . ?w rdf:type ontology:Q863908 }
probable cation efflux pump    BF2080
Probable cation efflux pump BF2080 encodes probable cation efflux pump BF2080
probable cation efflux pump    BF2080
action filter_type
action find
entity probable cation efflux pump    BF2080
relation encoded by
type nucleic acid sequence
['probable cation efflux pump    BF2080', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?w WHERE { resource:probable_cation_efflux_pump____BF2080 property:encoded_by ?w . ?w rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23103906
P703
Q631147
USER
Which infraspecific name is that nucleic acid sequence found in ?
(Q23103906,P703,c(Q631147))
action filter_type
action find
entity Q23103906
relation P703
type Q631147
['Q23103906', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?g WHERE { resource:Q23103906 property:P703 ?g . ?g rdf:type ontology:Q631147 }
probable cation efflux pump    BF2080
action filter_type
action find
entity probable cation efflux pump    BF2080
relation found in taxon
type infraspecific name
['probable cation efflux pump    BF2080', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?g WHERE { resource:probable_cation_efflux_pump____BF2080 property:found_in_taxon ?g . ?g rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102950
SYSTEM
Bacteroides fragilis YCH46
Q21102950
(Q23103906,P703,c(Q631147))
action filter_type
action find
entity Q23103906
relation P703
type Q631147
That nucleic acid sequence is found in [ANSWER]
['Q23103906', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?g WHERE { resource:Q23103906 property:P703 ?g . ?g rdf:type ontology:Q631147 }
Bacteroides fragilis YCH46
That nucleic acid sequence is found in Bacteroides fragilis YCH46
Bacteroides fragilis YCH46
action filter_type
action find
entity probable cation efflux pump    BF2080
relation found in taxon
type infraspecific name
['probable cation efflux pump    BF2080', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?g WHERE { resource:probable_cation_efflux_pump____BF2080 property:found_in_taxon ?g . ?g rdf:type ontology:infraspecific_name }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23449747
P681
Q15989253
USER
What is a component of probable cation efflux pump    BF2080 ?
(Q23449747,P681,c(Q15989253))
action filter_type
action find
entity Q23449747
relation P681
type Q15989253
['Q23449747', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:Q15989253 . resource:Q23449747 property:P681 ?m }
probable cation efflux pump    BF2080
action filter_type
action find
entity probable cation efflux pump    BF2080
relation cell component
type part
['probable cation efflux pump    BF2080', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:part . resource:probable_cation_efflux_pump____BF2080 property:cell_component ?m }
[]
part
Q14349455
SYSTEM
membrane
Q14349455
(Q23449747,P681,c(Q15989253))
action filter_type
action find
entity Q23449747
relation P681
type Q15989253
A component of probable cation efflux pump BF2080 is a [ANSWER]
['Q23449747', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:Q15989253 . resource:Q23449747 property:P681 ?m }
membrane
A component of probable cation efflux pump BF2080 is a membrane
membrane
action filter_type
action find
entity probable cation efflux pump    BF2080
relation cell component
type part
['probable cation efflux pump    BF2080', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:part . resource:probable_cation_efflux_pump____BF2080 property:cell_component ?m }
[]
Comparative Reasoning (All)
Comparative|More/Less|Mult. entity type|Indirect
P361
Q15989253 Q234460 Q5058355
USER
Which parts are more number of texts or cellular components a component of than that part ?
(c(Q234460)|c(Q5058355),P361,c(Q15989253))
action greater
action union
action find_reverse_tuple_counts
relation P361
type Q15989253
type Q234460
action find_reverse_tuple_counts
relation P361
type Q15989253
type Q5058355
action count
action filter_multi_types
action find_reverse
entity Q14349455
relation P361
type Q234460
type Q5058355
[[{'concept': 'Q234460'}, {'concept': 'Q5058355'}], 'P361', {'concept': 'Q15989253'}]
SELECT DISTINCT ?x WHERE { { SELECT DISTINCT ( COUNT ( ?g ) AS ?z ) ?x WHERE { ?g rdf:type ?d . VALUES ( ?d ) { ( ontology:Q234460 ) ( ontology:Q5058355 ) } } GROUP BY ?x } . { SELECT DISTINCT ( COUNT ( ?e ) AS ?b ) WHERE { ?e property:P361 resource:Q14349455 . { { ?e rdf:type ontology:Q234460 } UNION { ?e rdf:type ontology:Q5058355 } } } } . FILTER ( ?z > ?b ) }
action greater
action union
action find_reverse_tuple_counts
relation part of
type part
type text
action find_reverse_tuple_counts
relation part of
type part
type cellular component
action count
action filter_multi_types
action find_reverse
entity membrane
relation part of
type text
type cellular component
[[{'concept': 'text'}, {'concept': 'cellular component'}], 'part of', {'concept': 'part'}]
SELECT DISTINCT ?x WHERE { { SELECT DISTINCT ( COUNT ( ?g ) AS ?z ) ?x WHERE { ?g rdf:type ?d . VALUES ( ?d ) { ( ontology:text ) ( ontology:cellular_component ) } } GROUP BY ?x } . { SELECT DISTINCT ( COUNT ( ?e ) AS ?b ) WHERE { ?e property:part_of resource:membrane . { { ?e rdf:type ontology:text } UNION { ?e rdf:type ontology:cellular_component } } } } . FILTER ( ?z > ?b ) }
[]
part text cellular component
Q187181 Q14645596
SYSTEM
synapse, extracellular region
Q187181 Q14645596
(c(Q234460)|c(Q5058355),P361,c(Q15989253))
action greater
action union
action find_reverse_tuple_counts
relation P361
type Q15989253
type Q234460
action find_reverse_tuple_counts
relation P361
type Q15989253
type Q5058355
action count
action filter_multi_types
action find_reverse
entity Q14349455
relation P361
type Q234460
type Q5058355
[ANSWERS] are more number of texts or cellular components a component of than that part
[[{'concept': 'Q234460'}, {'concept': 'Q5058355'}], 'P361', {'concept': 'Q15989253'}]
SELECT DISTINCT ?x WHERE { { SELECT DISTINCT ( COUNT ( ?g ) AS ?z ) ?x WHERE { ?g rdf:type ?d . VALUES ( ?d ) { ( ontology:Q234460 ) ( ontology:Q5058355 ) } } GROUP BY ?x } . { SELECT DISTINCT ( COUNT ( ?e ) AS ?b ) WHERE { ?e property:P361 resource:Q14349455 . { { ?e rdf:type ontology:Q234460 } UNION { ?e rdf:type ontology:Q5058355 } } } } . FILTER ( ?z > ?b ) }
synapse extracellular region
Synapse and extracellular region are more number of texts or cellular components a component of than that part
synapse extracellular region
action greater
action union
action find_reverse_tuple_counts
relation part of
type part
type text
action find_reverse_tuple_counts
relation part of
type part
type cellular component
action count
action filter_multi_types
action find_reverse
entity membrane
relation part of
type text
type cellular component
[[{'concept': 'text'}, {'concept': 'cellular component'}], 'part of', {'concept': 'part'}]
SELECT DISTINCT ?x WHERE { { SELECT DISTINCT ( COUNT ( ?g ) AS ?z ) ?x WHERE { ?g rdf:type ?d . VALUES ( ?d ) { ( ontology:text ) ( ontology:cellular_component ) } } GROUP BY ?x } . { SELECT DISTINCT ( COUNT ( ?e ) AS ?b ) WHERE { ?e property:part_of resource:membrane . { { ?e rdf:type ontology:text } UNION { ?e rdf:type ontology:cellular_component } } } } . FILTER ( ?z > ?b ) }
[]
Verification (Boolean) (All)
Verification|one entity, multiple entities (as object) referred indirectly
Q21989100
P681
Q181394
USER
Do Ribonuclease P protein subunit p29 have those parts as their cell component ?
(Q21989100,P681,Q187181) (Q21989100,P681,Q14645596)
action is_in
entity prev_answer
action find
entity Q21989100
relation P681
['Q21989100', 'P681', 'Q187181'] ['Q21989100', 'P681', 'Q14645596']
ASK WHERE { resource:Q21989100 property:P681 ?z . VALUES ( ?z ) { ( resource:Q187181 ) ( resource:Q14645596 ) } }
Ribonuclease P protein subunit p29
action is_in
entity prev_answer
action find
entity Ribonuclease P protein subunit p29
relation cell component
['Ribonuclease P protein subunit p29', 'cell component', 'synapse'] ['Ribonuclease P protein subunit p29', 'cell component', 'extracellular region']
ASK WHERE { resource:Ribonuclease_P_protein_subunit_p29 property:cell_component ?z . VALUES ( ?z ) { ( resource:synapse ) ( resource:extracellular_region ) } }
[]
nutrient
SYSTEM
NO
(Q21989100,P681,Q187181) (Q21989100,P681,Q14645596)
action is_in
entity prev_answer
action find
entity Q21989100
relation P681
[ANSWER]
['Q21989100', 'P681', 'Q187181'] ['Q21989100', 'P681', 'Q14645596']
ASK WHERE { resource:Q21989100 property:P681 ?z . VALUES ( ?z ) { ( resource:Q187181 ) ( resource:Q14645596 ) } }
No
action is_in
entity prev_answer
action find
entity Ribonuclease P protein subunit p29
relation cell component
['Ribonuclease P protein subunit p29', 'cell component', 'synapse'] ['Ribonuclease P protein subunit p29', 'cell component', 'extracellular region']
ASK WHERE { resource:Ribonuclease_P_protein_subunit_p29 property:cell_component ?z . VALUES ( ?z ) { ( resource:synapse ) ( resource:extracellular_region ) } }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23103906
P688
Q181394
USER
What does probable cation efflux pump    BF2080 encode ?
(Q23103906,P688,c(Q181394))
action filter_type
action find
entity Q23103906
relation P688
type Q181394
['Q23103906', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?u WHERE { resource:Q23103906 property:P688 ?u . ?u rdf:type ontology:Q181394 }
probable cation efflux pump    BF2080
action filter_type
action find
entity probable cation efflux pump    BF2080
relation encodes
type nutrient
['probable cation efflux pump    BF2080', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?u WHERE { resource:probable_cation_efflux_pump____BF2080 property:encodes ?u . ?u rdf:type ontology:nutrient }
[]
nutrient
Q23449747
SYSTEM
probable cation efflux pump    BF2080
Q23449747
(Q23103906,P688,c(Q181394))
action filter_type
action find
entity Q23103906
relation P688
type Q181394
Probable cation efflux pump BF 2080 encodes the probable cation efflux pump BF2080
['Q23103906', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?u WHERE { resource:Q23103906 property:P688 ?u . ?u rdf:type ontology:Q181394 }
probable cation efflux pump    BF2080
Probable cation efflux pump BF 2080 encodes the probable cation efflux pump BF2080
probable cation efflux pump    BF2080
action filter_type
action find
entity probable cation efflux pump    BF2080
relation encodes
type nutrient
['probable cation efflux pump    BF2080', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?u WHERE { resource:probable_cation_efflux_pump____BF2080 property:encodes ?u . ?u rdf:type ontology:nutrient }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation|Incomplete
Q18037598 Q23103906
P688
Q181394
USER
Or GABARAPL1?
OR((Q23103906,P688,c(Q181394)), (Q18037598,P688,c(Q181394)))
action filter_type
action union
action find
entity Q23103906
relation P688
action find
entity Q18037598
relation P688
type Q181394
{'OR': [['Q23103906', 'P688', {'concept': 'Q181394'}], ['Q18037598', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?z WHERE { { VALUES ( ?y ) { ( resource:Q23103906 ) ( resource:Q18037598 ) } . ?y property:P688 ?z } . ?z rdf:type ontology:Q181394 }
GABARAPL1 probable cation efflux pump    BF2080
action filter_type
action union
action find
entity probable cation efflux pump    BF2080
relation encodes
action find
entity GABARAPL1
relation encodes
type nutrient
{'OR': [['probable cation efflux pump    BF2080', 'encodes', {'concept': 'nutrient'}], ['GABARAPL1', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?z WHERE { { VALUES ( ?y ) { ( resource:probable_cation_efflux_pump____BF2080 ) ( resource:GABARAPL1 ) } . ?y property:encodes ?z } . ?z rdf:type ontology:nutrient }
[]
nutrient
Q21116481 Q21149740 Q23449747
SYSTEM
Gamma-aminobutyric acid receptor-associated protein-like 1, Gamma-aminobutyric acid receptor-associated protein-like 1, probable cation efflux pump    BF2080
Q21116481 Q21149740 Q23449747
OR((Q23103906,P688,c(Q181394)), (Q18037598,P688,c(Q181394)))
action filter_type
action union
action find
entity Q23103906
relation P688
action find
entity Q18037598
relation P688
type Q181394
[ANSWERS]
{'OR': [['Q23103906', 'P688', {'concept': 'Q181394'}], ['Q18037598', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?z WHERE { { VALUES ( ?y ) { ( resource:Q23103906 ) ( resource:Q18037598 ) } . ?y property:P688 ?z } . ?z rdf:type ontology:Q181394 }
Gamma-aminobutyric acid receptor-associated protein-like 1 Gamma-aminobutyric acid receptor-associated protein-like 1 probable cation efflux pump    BF2080
Gamma-aminobutyric acid receptor-associated protein-like 1 Gamma-aminobutyric acid receptor-associated protein-like 1 probable cation efflux pump    BF2080
action filter_type
action union
action find
entity probable cation efflux pump    BF2080
relation encodes
action find
entity GABARAPL1
relation encodes
type nutrient
{'OR': [['probable cation efflux pump    BF2080', 'encodes', {'concept': 'nutrient'}], ['GABARAPL1', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?z WHERE { { VALUES ( ?y ) { ( resource:probable_cation_efflux_pump____BF2080 ) ( resource:GABARAPL1 ) } . ?y property:encodes ?z } . ?z rdf:type ontology:nutrient }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21116481
P682
Q2996394
USER
Which biological process is Gamma-aminobutyric acid receptor-associated protein-like 1 involved in ?
(Q21116481,P682,c(Q2996394))
action filter_type
action find
entity Q21116481
relation P682
type Q2996394
['Q21116481', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?o WHERE { resource:Q21116481 property:P682 ?o . ?o rdf:type ontology:Q2996394 }
Gamma-aminobutyric acid receptor-associated protein-like 1
action filter_type
action find
entity Gamma-aminobutyric acid receptor-associated protein-like 1
relation biological process
type biological process
['Gamma-aminobutyric acid receptor-associated protein-like 1', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?o WHERE { resource:Gamma-aminobutyric_acid_receptor-associated_protein-like_1 property:biological_process ?o . ?o rdf:type ontology:biological_process }
[]
biological process
Q288322
SYSTEM
autophagy
Q288322
(Q21116481,P682,c(Q2996394))
action filter_type
action find
entity Q21116481
relation P682
type Q2996394
Which biological process is Gamma-aminobutyric acid receptor-associated protein-like 1 involved in
['Q21116481', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?o WHERE { resource:Q21116481 property:P682 ?o . ?o rdf:type ontology:Q2996394 }
autophagy
Which biological process is Gamma-aminobutyric acid receptor-associated protein-like 1 involved in
autophagy
action filter_type
action find
entity Gamma-aminobutyric acid receptor-associated protein-like 1
relation biological process
type biological process
['Gamma-aminobutyric acid receptor-associated protein-like 1', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?o WHERE { resource:Gamma-aminobutyric_acid_receptor-associated_protein-like_1 property:biological_process ?o . ?o rdf:type ontology:biological_process }
[]
Logical Reasoning (All)
Logical|Intersection|Single_Relation
Q27548239 Q21116481
P681
Q15989253
USER
Which parts are the cell components of Gamma-aminobutyric acid receptor-associated protein-like 1 and proteasome core particle subunit beta 3 YER094C ?
AND((Q21116481,P681,c(Q15989253)), (Q27548239,P681,c(Q15989253)))
action filter_type
action intersection
action find
entity Q21116481
relation P681
action find
entity Q27548239
relation P681
type Q15989253
{'AND': [['Q21116481', 'P681', {'concept': 'Q15989253'}], ['Q27548239', 'P681', {'concept': 'Q15989253'}]]}
SELECT DISTINCT ?k WHERE { resource:Q27548239 property:P681 ?k . resource:Q21116481 property:P681 ?k . ?k rdf:type ontology:Q15989253 }
proteasome core particle subunit beta 3 YER094C Gamma-aminobutyric acid receptor-associated protein-like 1
action filter_type
action intersection
action find
entity Gamma-aminobutyric acid receptor-associated protein-like 1
relation cell component
action find
entity proteasome core particle subunit beta 3 YER094C
relation cell component
type part
{'AND': [['Gamma-aminobutyric acid receptor-associated protein-like 1', 'cell component', {'concept': 'part'}], ['proteasome core particle subunit beta 3 YER094C', 'cell component', {'concept': 'part'}]]}
SELECT DISTINCT ?k WHERE { resource:proteasome_core_particle_subunit_beta_3_YER094C property:cell_component ?k . resource:Gamma-aminobutyric_acid_receptor-associated_protein-like_1 property:cell_component ?k . ?k rdf:type ontology:part }
[]
part
Q79899
SYSTEM
cytoplasm
Q79899
AND((Q21116481,P681,c(Q15989253)), (Q27548239,P681,c(Q15989253)))
action filter_type
action intersection
action find
entity Q21116481
relation P681
action find
entity Q27548239
relation P681
type Q15989253
The [ANSWER] is the cell components of Gamma-aminobutyric acid receptor-associated protein-like 1 and proteasome core particle subunit beta 3 YER094C
{'AND': [['Q21116481', 'P681', {'concept': 'Q15989253'}], ['Q27548239', 'P681', {'concept': 'Q15989253'}]]}
SELECT DISTINCT ?k WHERE { resource:Q27548239 property:P681 ?k . resource:Q21116481 property:P681 ?k . ?k rdf:type ontology:Q15989253 }
cytoplasm
The cytoplasm is the cell components of Gamma-aminobutyric acid receptor-associated protein-like 1 and proteasome core particle subunit beta 3 YER094C
cytoplasm
action filter_type
action intersection
action find
entity Gamma-aminobutyric acid receptor-associated protein-like 1
relation cell component
action find
entity proteasome core particle subunit beta 3 YER094C
relation cell component
type part
{'AND': [['Gamma-aminobutyric acid receptor-associated protein-like 1', 'cell component', {'concept': 'part'}], ['proteasome core particle subunit beta 3 YER094C', 'cell component', {'concept': 'part'}]]}
SELECT DISTINCT ?k WHERE { resource:proteasome_core_particle_subunit_beta_3_YER094C property:cell_component ?k . resource:Gamma-aminobutyric_acid_receptor-associated_protein-like_1 property:cell_component ?k . ?k rdf:type ontology:part }
[]