Simple Question (Direct)
Simple Question
Q23514643
P703
Q631147
USER
What is the taxon to which N-acetyltransferase YokL    BSU21550 belongs to ?
(Q23514643,P703,c(Q631147))
action filter_type
action find
entity Q23514643
relation P703
type Q631147
['Q23514643', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?n WHERE { resource:Q23514643 property:P703 ?n . ?n rdf:type ontology:Q631147 }
N-acetyltransferase YokL    BSU21550
action filter_type
action find
entity N-acetyltransferase YokL    BSU21550
relation found in taxon
type infraspecific name
['N-acetyltransferase YokL    BSU21550', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?n WHERE { resource:N-acetyltransferase_YokL____BSU21550 property:found_in_taxon ?n . ?n rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102971
SYSTEM
Bacillus subtilis subsp. subtilis str. 168
Q21102971
(Q23514643,P703,c(Q631147))
action filter_type
action find
entity Q23514643
relation P703
type Q631147
[ANSWER]
['Q23514643', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?n WHERE { resource:Q23514643 property:P703 ?n . ?n rdf:type ontology:Q631147 }
Bacillus subtilis subsp. subtilis str. 168
Bacillus subtilis subsp. subtilis str. 168
Bacillus subtilis subsp. subtilis str. 168
action filter_type
action find
entity N-acetyltransferase YokL    BSU21550
relation found in taxon
type infraspecific name
['N-acetyltransferase YokL    BSU21550', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?n WHERE { resource:N-acetyltransferase_YokL____BSU21550 property:found_in_taxon ?n . ?n rdf:type ontology:infraspecific_name }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23514643
P702
Q863908
USER
What encodes N-acetyltransferase YokL    BSU21550 ?
(Q23514643,P702,c(Q863908))
action filter_type
action find
entity Q23514643
relation P702
type Q863908
['Q23514643', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?b WHERE { resource:Q23514643 property:P702 ?b . ?b rdf:type ontology:Q863908 }
N-acetyltransferase YokL    BSU21550
action filter_type
action find
entity N-acetyltransferase YokL    BSU21550
relation encoded by
type nucleic acid sequence
['N-acetyltransferase YokL    BSU21550', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?b WHERE { resource:N-acetyltransferase_YokL____BSU21550 property:encoded_by ?b . ?b rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23349211
SYSTEM
N-acetyltransferase YokL    BSU21550
Q23349211
(Q23514643,P702,c(Q863908))
action filter_type
action find
entity Q23514643
relation P702
type Q863908
N-acetyltransferase YokL BSU21550 encodes N-acetyltransferase YokL BSU21550
['Q23514643', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?b WHERE { resource:Q23514643 property:P702 ?b . ?b rdf:type ontology:Q863908 }
N-acetyltransferase YokL    BSU21550
N-acetyltransferase YokL BSU21550 encodes N-acetyltransferase YokL BSU21550
N-acetyltransferase YokL    BSU21550
action filter_type
action find
entity N-acetyltransferase YokL    BSU21550
relation encoded by
type nucleic acid sequence
['N-acetyltransferase YokL    BSU21550', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?b WHERE { resource:N-acetyltransferase_YokL____BSU21550 property:encoded_by ?b . ?b rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|3 entities, 2 direct, 2(direct) are query entities, subject is indirect
Q23349211 Q21985455 Q23616213
P688
Q181394
USER
Does that nucleic acid sequence encodes Probable E3 ubiquitin-protein ligase HERC4 and 3-isopropylmalate dehydrogenase    SRU_2148 ?
(Q23349211,P688,Q21985455) (Q23349211,P688,Q23616213)
action is_in
entity Q23349211
action intersection
action find_reverse
entity Q21985455
relation P688
action find_reverse
entity Q23616213
relation P688
['Q23349211', 'P688', 'Q21985455'] ['Q23349211', 'P688', 'Q23616213']
ASK WHERE { resource:Q23349211 property:P688 resource:Q21985455 . resource:Q23349211 property:P688 resource:Q23616213 }
N-acetyltransferase YokL    BSU21550 Probable E3 ubiquitin-protein ligase HERC4 3-isopropylmalate dehydrogenase    SRU_2148
action is_in
entity N-acetyltransferase YokL    BSU21550
action intersection
action find_reverse
entity Probable E3 ubiquitin-protein ligase HERC4
relation encodes
action find_reverse
entity 3-isopropylmalate dehydrogenase    SRU_2148
relation encodes
['N-acetyltransferase YokL    BSU21550', 'encodes', 'Probable E3 ubiquitin-protein ligase HERC4'] ['N-acetyltransferase YokL    BSU21550', 'encodes', '3-isopropylmalate dehydrogenase    SRU_2148']
ASK WHERE { resource:N-acetyltransferase_YokL____BSU21550 property:encodes resource:Probable_E3_ubiquitin-protein_ligase_HERC4 . resource:N-acetyltransferase_YokL____BSU21550 property:encodes resource:3-isopropylmalate_dehydrogenase____SRU_2148 }
[]
nutrient
SYSTEM
NO
(Q23349211,P688,Q21985455) (Q23349211,P688,Q23616213)
action is_in
entity Q23349211
action intersection
action find_reverse
entity Q21985455
relation P688
action find_reverse
entity Q23616213
relation P688
[ANSWER]
['Q23349211', 'P688', 'Q21985455'] ['Q23349211', 'P688', 'Q23616213']
ASK WHERE { resource:Q23349211 property:P688 resource:Q21985455 . resource:Q23349211 property:P688 resource:Q23616213 }
No
action is_in
entity N-acetyltransferase YokL    BSU21550
action intersection
action find_reverse
entity Probable E3 ubiquitin-protein ligase HERC4
relation encodes
action find_reverse
entity 3-isopropylmalate dehydrogenase    SRU_2148
relation encodes
['N-acetyltransferase YokL    BSU21550', 'encodes', 'Probable E3 ubiquitin-protein ligase HERC4'] ['N-acetyltransferase YokL    BSU21550', 'encodes', '3-isopropylmalate dehydrogenase    SRU_2148']
ASK WHERE { resource:N-acetyltransferase_YokL____BSU21550 property:encodes resource:Probable_E3_ubiquitin-protein_ligase_HERC4 . resource:N-acetyltransferase_YokL____BSU21550 property:encodes resource:3-isopropylmalate_dehydrogenase____SRU_2148 }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q23403492
Q181394
USER
And also tell me about ankyrin repeat-containing protein    SSA_1336?
(Q23403492,P688,c(Q181394))
action filter_type
action find
entity Q23403492
relation P688
type Q181394
['Q23403492', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?f WHERE { resource:Q23403492 property:P688 ?f . ?f rdf:type ontology:Q181394 }
ankyrin repeat-containing protein    SSA_1336
action filter_type
action find
entity ankyrin repeat-containing protein    SSA_1336
relation encodes
type nutrient
['ankyrin repeat-containing protein    SSA_1336', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?f WHERE { resource:ankyrin_repeat-containing_protein____SSA_1336 property:encodes ?f . ?f rdf:type ontology:nutrient }
[]
nutrient
Q23487628
SYSTEM
ankyrin repeat-containing protein    SSA_1336
Q23487628
(Q23403492,P688,c(Q181394))
action filter_type
action find
entity Q23403492
relation P688
type Q181394
[ANSWER]
['Q23403492', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?f WHERE { resource:Q23403492 property:P688 ?f . ?f rdf:type ontology:Q181394 }
ankyrin repeat-containing protein    SSA_1336
ankyrin repeat-containing protein    SSA_1336
action filter_type
action find
entity ankyrin repeat-containing protein    SSA_1336
relation encodes
type nutrient
['ankyrin repeat-containing protein    SSA_1336', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?f WHERE { resource:ankyrin_repeat-containing_protein____SSA_1336 property:encodes ?f . ?f rdf:type ontology:nutrient }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q23487628 Q23416744
P688
Q863908
USER
Does sensor kinase protein    BN117_1864 encode that nutrient ?
(Q23416744,P688,Q23487628)
action is_in
entity Q23416744
action find
entity Q23487628
relation P688
['Q23416744', 'P688', 'Q23487628']
ASK WHERE { resource:Q23487628 property:P688 resource:Q23416744 }
ankyrin repeat-containing protein    SSA_1336 sensor kinase protein    BN117_1864
action is_in
entity sensor kinase protein    BN117_1864
action find
entity ankyrin repeat-containing protein    SSA_1336
relation encodes
['sensor kinase protein    BN117_1864', 'encodes', 'ankyrin repeat-containing protein    SSA_1336']
ASK WHERE { resource:ankyrin_repeat-containing_protein____SSA_1336 property:encodes resource:sensor_kinase_protein____BN117_1864 }
[]
nucleic acid sequence
SYSTEM
NO
(Q23416744,P688,Q23487628)
action is_in
entity Q23416744
action find
entity Q23487628
relation P688
[ANSWER]
['Q23416744', 'P688', 'Q23487628']
ASK WHERE { resource:Q23487628 property:P688 resource:Q23416744 }
No
action is_in
entity sensor kinase protein    BN117_1864
action find
entity ankyrin repeat-containing protein    SSA_1336
relation encodes
['sensor kinase protein    BN117_1864', 'encodes', 'ankyrin repeat-containing protein    SSA_1336']
ASK WHERE { resource:ankyrin_repeat-containing_protein____SSA_1336 property:encodes resource:sensor_kinase_protein____BN117_1864 }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type
Q23487628
P688
Q863908
USER
How many nucleic acid sequences encode ankyrin repeat-containing protein    SSA_1336 ?
(c(Q863908),P688,Q23487628)
action count
action filter_type
action find_reverse
entity Q23487628
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q23487628']
SELECT DISTINCT ( COUNT ( ?e ) AS ?m ) WHERE { ?e property:P688 resource:Q23487628 . ?e rdf:type ontology:Q863908 }
ankyrin repeat-containing protein    SSA_1336
action count
action filter_type
action find_reverse
entity ankyrin repeat-containing protein    SSA_1336
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'ankyrin repeat-containing protein    SSA_1336']
SELECT DISTINCT ( COUNT ( ?e ) AS ?m ) WHERE { ?e property:encodes resource:ankyrin_repeat-containing_protein____SSA_1336 . ?e rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
SYSTEM
1
Q23403492
(c(Q863908),P688,Q23487628)
action count
action filter_type
action find_reverse
entity Q23487628
relation P688
type Q863908
[ANSWER]
[{'concept': 'Q863908'}, 'P688', 'Q23487628']
SELECT DISTINCT ( COUNT ( ?e ) AS ?m ) WHERE { ?e property:P688 resource:Q23487628 . ?e rdf:type ontology:Q863908 }
ankyrin repeat-containing protein    SSA_1336
1
action count
action filter_type
action find_reverse
entity ankyrin repeat-containing protein    SSA_1336
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'ankyrin repeat-containing protein    SSA_1336']
SELECT DISTINCT ( COUNT ( ?e ) AS ?m ) WHERE { ?e property:encodes resource:ankyrin_repeat-containing_protein____SSA_1336 . ?e rdf:type ontology:nucleic_acid_sequence }
[]