Simple Question (Direct)
Simple Question
Q23494750
P702
Q863908
USER
What is the gene that encodes type I restriction-modification system M subunit    spr0790 ?
(Q23494750,P702,c(Q863908))
action filter_type
action find
entity Q23494750
relation P702
type Q863908
['Q23494750', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?w WHERE { resource:Q23494750 property:P702 ?w . ?w rdf:type ontology:Q863908 }
type I restriction-modification system M subunit    spr0790
action filter_type
action find
entity type I restriction-modification system M subunit    spr0790
relation encoded by
type nucleic acid sequence
['type I restriction-modification system M subunit    spr0790', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?w WHERE { resource:type_I_restriction-modification_system_M_subunit____spr0790 property:encoded_by ?w . ?w rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23228416
SYSTEM
type I restriction-modification system M subunit    spr0790
Q23228416
(Q23494750,P702,c(Q863908))
action filter_type
action find
entity Q23494750
relation P702
type Q863908
The gene that encodes type I restriction-modification system M subunit spr0790 is in type I restriction-modification system M subunit spr0790
['Q23494750', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?w WHERE { resource:Q23494750 property:P702 ?w . ?w rdf:type ontology:Q863908 }
type I restriction-modification system M subunit    spr0790
The gene that encodes type I restriction-modification system M subunit spr0790 is in type I restriction-modification system M subunit spr0790
type I restriction-modification system M subunit    spr0790
action filter_type
action find
entity type I restriction-modification system M subunit    spr0790
relation encoded by
type nucleic acid sequence
['type I restriction-modification system M subunit    spr0790', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?w WHERE { resource:type_I_restriction-modification_system_M_subunit____spr0790 property:encoded_by ?w . ?w rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23494750
P688
Q863908
USER
Which nucleic acid sequence encodes type I restriction-modification system M subunit    spr0790 ?
(c(Q863908),P688,Q23494750)
action filter_type
action find_reverse
entity Q23494750
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q23494750']
SELECT DISTINCT ?s WHERE { ?s property:P688 resource:Q23494750 . ?s rdf:type ontology:Q863908 }
type I restriction-modification system M subunit    spr0790
action filter_type
action find_reverse
entity type I restriction-modification system M subunit    spr0790
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'type I restriction-modification system M subunit    spr0790']
SELECT DISTINCT ?s WHERE { ?s property:encodes resource:type_I_restriction-modification_system_M_subunit____spr0790 . ?s rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23228416
SYSTEM
type I restriction-modification system M subunit    spr0790
Q23228416
(c(Q863908),P688,Q23494750)
action filter_type
action find_reverse
entity Q23494750
relation P688
type Q863908
Type I restriction-modification system M subunit spr0790 encodes type I restriction-modification system M subunit spr0790
[{'concept': 'Q863908'}, 'P688', 'Q23494750']
SELECT DISTINCT ?s WHERE { ?s property:P688 resource:Q23494750 . ?s rdf:type ontology:Q863908 }
type I restriction-modification system M subunit    spr0790
Type I restriction-modification system M subunit spr0790 encodes type I restriction-modification system M subunit spr0790
type I restriction-modification system M subunit    spr0790
action filter_type
action find_reverse
entity type I restriction-modification system M subunit    spr0790
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'type I restriction-modification system M subunit    spr0790']
SELECT DISTINCT ?s WHERE { ?s property:encodes resource:type_I_restriction-modification_system_M_subunit____spr0790 . ?s rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|3 entities, all direct, 2 are query entities
Q23228416 Q24280653 Q23494750
P688
Q181394
USER
Does type I restriction-modification system M subunit    spr0790 encode citrate lyase subunit gamma    O3K_18505 and type I restriction-modification system M subunit    spr0790 ?
(Q23228416,P688,Q24280653) (Q23228416,P688,Q23494750)
action is_in
entity Q23228416
action intersection
action find_reverse
entity Q24280653
relation P688
action find_reverse
entity Q23494750
relation P688
['Q23228416', 'P688', 'Q24280653'] ['Q23228416', 'P688', 'Q23494750']
ASK WHERE { resource:Q23228416 property:P688 resource:Q24280653 . resource:Q23228416 property:P688 resource:Q23494750 }
type I restriction-modification system M subunit    spr0790 citrate lyase subunit gamma    O3K_18505 type I restriction-modification system M subunit    spr0790
action is_in
entity type I restriction-modification system M subunit    spr0790
action intersection
action find_reverse
entity citrate lyase subunit gamma    O3K_18505
relation encodes
action find_reverse
entity type I restriction-modification system M subunit    spr0790
relation encodes
['type I restriction-modification system M subunit    spr0790', 'encodes', 'citrate lyase subunit gamma    O3K_18505'] ['type I restriction-modification system M subunit    spr0790', 'encodes', 'type I restriction-modification system M subunit    spr0790']
ASK WHERE { resource:type_I_restriction-modification_system_M_subunit____spr0790 property:encodes resource:citrate_lyase_subunit_gamma____O3K_18505 . resource:type_I_restriction-modification_system_M_subunit____spr0790 property:encodes resource:type_I_restriction-modification_system_M_subunit____spr0790 }
[]
nutrient
SYSTEM
NO and YES respectively
(Q23228416,P688,Q24280653) (Q23228416,P688,Q23494750)
action is_in
entity Q23228416
action intersection
action find_reverse
entity Q24280653
relation P688
action find_reverse
entity Q23494750
relation P688
[ANSWER]
['Q23228416', 'P688', 'Q24280653'] ['Q23228416', 'P688', 'Q23494750']
ASK WHERE { resource:Q23228416 property:P688 resource:Q24280653 . resource:Q23228416 property:P688 resource:Q23494750 }
NO and YES respectively
action is_in
entity type I restriction-modification system M subunit    spr0790
action intersection
action find_reverse
entity citrate lyase subunit gamma    O3K_18505
relation encodes
action find_reverse
entity type I restriction-modification system M subunit    spr0790
relation encodes
['type I restriction-modification system M subunit    spr0790', 'encodes', 'citrate lyase subunit gamma    O3K_18505'] ['type I restriction-modification system M subunit    spr0790', 'encodes', 'type I restriction-modification system M subunit    spr0790']
ASK WHERE { resource:type_I_restriction-modification_system_M_subunit____spr0790 property:encodes resource:citrate_lyase_subunit_gamma____O3K_18505 . resource:type_I_restriction-modification_system_M_subunit____spr0790 property:encodes resource:type_I_restriction-modification_system_M_subunit____spr0790 }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type
Q23228416
P688
Q181394
USER
How many nutrients are encoded by type I restriction-modification system M subunit    spr0790 ?
(Q23228416,P688,c(Q181394))
action count
action filter_type
action find
entity Q23228416
relation P688
type Q181394
['Q23228416', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?j ) AS ?t ) WHERE { resource:Q23228416 property:P688 ?j . ?j rdf:type ontology:Q181394 }
type I restriction-modification system M subunit    spr0790
action count
action filter_type
action find
entity type I restriction-modification system M subunit    spr0790
relation encodes
type nutrient
['type I restriction-modification system M subunit    spr0790', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?j ) AS ?t ) WHERE { resource:type_I_restriction-modification_system_M_subunit____spr0790 property:encodes ?j . ?j rdf:type ontology:nutrient }
[]
nutrient
SYSTEM
1
Q23494750
(Q23228416,P688,c(Q181394))
action count
action filter_type
action find
entity Q23228416
relation P688
type Q181394
[ANSWER]
['Q23228416', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?j ) AS ?t ) WHERE { resource:Q23228416 property:P688 ?j . ?j rdf:type ontology:Q181394 }
type I restriction-modification system M subunit    spr0790
1
action count
action filter_type
action find
entity type I restriction-modification system M subunit    spr0790
relation encodes
type nutrient
['type I restriction-modification system M subunit    spr0790', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?j ) AS ?t ) WHERE { resource:type_I_restriction-modification_system_M_subunit____spr0790 property:encodes ?j . ?j rdf:type ontology:nutrient }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q27540460
P703
Q631147
USER
What is the taxon to which mRNA splicing protein SME1 YOR159C belongs to ?
(Q27540460,P703,c(Q631147))
action filter_type
action find
entity Q27540460
relation P703
type Q631147
['Q27540460', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?p WHERE { ?p rdf:type ontology:Q631147 . resource:Q27540460 property:P703 ?p }
mRNA splicing protein SME1 YOR159C
action filter_type
action find
entity mRNA splicing protein SME1 YOR159C
relation found in taxon
type infraspecific name
['mRNA splicing protein SME1 YOR159C', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?p WHERE { ?p rdf:type ontology:infraspecific_name . resource:mRNA_splicing_protein_SME1_YOR159C property:found_in_taxon ?p }
[]
infraspecific name
Q27510868
SYSTEM
Saccharomyces cerevisiae S288c
Q27510868
(Q27540460,P703,c(Q631147))
action filter_type
action find
entity Q27540460
relation P703
type Q631147
[ANSWER]
['Q27540460', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?p WHERE { ?p rdf:type ontology:Q631147 . resource:Q27540460 property:P703 ?p }
Saccharomyces cerevisiae S288c
Saccharomyces cerevisiae S288c
Saccharomyces cerevisiae S288c
action filter_type
action find
entity mRNA splicing protein SME1 YOR159C
relation found in taxon
type infraspecific name
['mRNA splicing protein SME1 YOR159C', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?p WHERE { ?p rdf:type ontology:infraspecific_name . resource:mRNA_splicing_protein_SME1_YOR159C property:found_in_taxon ?p }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q181394 Q181394 Q79529
USER
How many nutrients do exactly 10 nutrients and chemical substances contact with ?
(c(Q181394)|c(Q79529),P129,c(Q181394))
action count
action equal
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
value 10
[[{'concept': 'Q181394'}, {'concept': 'Q79529'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?e ) AS ?u ) WHERE { { SELECT DISTINCT ( COUNT ( ?l ) AS ?p ) ?e WHERE { VALUES ( ?k ) { ( ontology:Q181394 ) ( ontology:Q79529 ) } . ?l rdf:type ?k } GROUP BY ?e } . FILTER ( ?p = 10 ) }
action count
action equal
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
value 10
[[{'concept': 'nutrient'}, {'concept': 'chemical substance'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?e ) AS ?u ) WHERE { { SELECT DISTINCT ( COUNT ( ?l ) AS ?p ) ?e WHERE { VALUES ( ?k ) { ( ontology:nutrient ) ( ontology:chemical_substance ) } . ?l rdf:type ?k } GROUP BY ?e } . FILTER ( ?p = 10 ) }
[]
nutrient nutrient chemical substance
SYSTEM
6
Q21154358 Q7673856 Q21115962 Q12746120 Q5629167 Q21497939
(c(Q181394)|c(Q79529),P129,c(Q181394))
action count
action equal
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
value 10
[ANSWER]
[[{'concept': 'Q181394'}, {'concept': 'Q79529'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?e ) AS ?u ) WHERE { { SELECT DISTINCT ( COUNT ( ?l ) AS ?p ) ?e WHERE { VALUES ( ?k ) { ( ontology:Q181394 ) ( ontology:Q79529 ) } . ?l rdf:type ?k } GROUP BY ?e } . FILTER ( ?p = 10 ) }
Histone deacetylase 3 Substance-P receptor Glutamate receptor 2 Muscarinic acetylcholine receptor M5 Histone deacetylase 1 5-hydroxytryptamine receptor 7
6
action count
action equal
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
value 10
[[{'concept': 'nutrient'}, {'concept': 'chemical substance'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?e ) AS ?u ) WHERE { { SELECT DISTINCT ( COUNT ( ?l ) AS ?p ) ?e WHERE { VALUES ( ?k ) { ( ontology:nutrient ) ( ontology:chemical_substance ) } . ?l rdf:type ?k } GROUP BY ?e } . FILTER ( ?p = 10 ) }
[]