Simple Question (Direct)
Simple Question
Q23501536
P702
Q863908
USER
What is the gene that encodes ABC transporter ATP-binding protein    EF3200 ?
(Q23501536,P702,c(Q863908))
action filter_type
action find
entity Q23501536
relation P702
type Q863908
['Q23501536', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?r WHERE { resource:Q23501536 property:P702 ?r . ?r rdf:type ontology:Q863908 }
ABC transporter ATP-binding protein    EF3200
action filter_type
action find
entity ABC transporter ATP-binding protein    EF3200
relation encoded by
type nucleic acid sequence
['ABC transporter ATP-binding protein    EF3200', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?r WHERE { resource:ABC_transporter_ATP-binding_protein____EF3200 property:encoded_by ?r . ?r rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23176168
SYSTEM
ABC transporter ATP-binding protein    EF3200
Q23176168
(Q23501536,P702,c(Q863908))
action filter_type
action find
entity Q23501536
relation P702
type Q863908
The gene that encodes ABC transporter ATP-binding protein EF3200 is codes ABC transporter ATP-binding protein EF3200
['Q23501536', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?r WHERE { resource:Q23501536 property:P702 ?r . ?r rdf:type ontology:Q863908 }
ABC transporter ATP-binding protein    EF3200
The gene that encodes ABC transporter ATP-binding protein EF3200 is codes ABC transporter ATP-binding protein EF3200
ABC transporter ATP-binding protein    EF3200
action filter_type
action find
entity ABC transporter ATP-binding protein    EF3200
relation encoded by
type nucleic acid sequence
['ABC transporter ATP-binding protein    EF3200', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?r WHERE { resource:ABC_transporter_ATP-binding_protein____EF3200 property:encoded_by ?r . ?r rdf:type ontology:nucleic_acid_sequence }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Mult. entity type
Q23501536 Q21117704
P688
Q863908
USER
How many nucleic acid sequences encode ABC transporter ATP-binding protein    EF3200 or Gap junction protein ?
(c(Q863908),P688,Q23501536) (c(Q863908),P688,Q21117704)
action count
action union
action filter_type
action find_reverse
entity Q23501536
relation P688
type Q863908
action filter_type
action find_reverse
entity Q21117704
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q23501536'] [{'concept': 'Q863908'}, 'P688', 'Q21117704']
SELECT DISTINCT ( COUNT ( ?y ) AS ?x ) WHERE { ?y property:P688 ?r . VALUES ( ?r ) { ( resource:Q21117704 ) ( resource:Q23501536 ) } }
ABC transporter ATP-binding protein    EF3200 Gap junction protein
action count
action union
action filter_type
action find_reverse
entity ABC transporter ATP-binding protein    EF3200
relation encodes
type nucleic acid sequence
action filter_type
action find_reverse
entity Gap junction protein
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'ABC transporter ATP-binding protein    EF3200'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'Gap junction protein']
SELECT DISTINCT ( COUNT ( ?y ) AS ?x ) WHERE { ?y property:encodes ?r . VALUES ( ?r ) { ( resource:Gap_junction_protein ) ( resource:ABC_transporter_ATP-binding_protein____EF3200 ) } }
[]
nucleic acid sequence
SYSTEM
2
Q23176168 Q18025961
(c(Q863908),P688,Q23501536) (c(Q863908),P688,Q21117704)
action count
action union
action filter_type
action find_reverse
entity Q23501536
relation P688
type Q863908
action filter_type
action find_reverse
entity Q21117704
relation P688
type Q863908
[ANSWER]
[{'concept': 'Q863908'}, 'P688', 'Q23501536'] [{'concept': 'Q863908'}, 'P688', 'Q21117704']
SELECT DISTINCT ( COUNT ( ?y ) AS ?x ) WHERE { ?y property:P688 ?r . VALUES ( ?r ) { ( resource:Q21117704 ) ( resource:Q23501536 ) } }
ABC transporter ATP-binding protein    EF3200 GJA5
2
action count
action union
action filter_type
action find_reverse
entity ABC transporter ATP-binding protein    EF3200
relation encodes
type nucleic acid sequence
action filter_type
action find_reverse
entity Gap junction protein
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'ABC transporter ATP-binding protein    EF3200'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'Gap junction protein']
SELECT DISTINCT ( COUNT ( ?y ) AS ?x ) WHERE { ?y property:encodes ?r . VALUES ( ?r ) { ( resource:Gap_junction_protein ) ( resource:ABC_transporter_ATP-binding_protein____EF3200 ) } }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23501536
P703
Q631147
USER
Which taxon is ABC transporter ATP-binding protein    EF3200 a part of ?
(Q23501536,P703,c(Q631147))
action filter_type
action find
entity Q23501536
relation P703
type Q631147
['Q23501536', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?h WHERE { resource:Q23501536 property:P703 ?h . ?h rdf:type ontology:Q631147 }
ABC transporter ATP-binding protein    EF3200
action filter_type
action find
entity ABC transporter ATP-binding protein    EF3200
relation found in taxon
type infraspecific name
['ABC transporter ATP-binding protein    EF3200', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?h WHERE { resource:ABC_transporter_ATP-binding_protein____EF3200 property:found_in_taxon ?h . ?h rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102965
SYSTEM
Enterococcus faecalis V583
Q21102965
(Q23501536,P703,c(Q631147))
action filter_type
action find
entity Q23501536
relation P703
type Q631147
[ANSWER] is ABC transporter ATP-binding protein EF3200 a part of
['Q23501536', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?h WHERE { resource:Q23501536 property:P703 ?h . ?h rdf:type ontology:Q631147 }
Enterococcus faecalis V583
Enterococcus faecalis V583 is ABC transporter ATP-binding protein EF3200 a part of
Enterococcus faecalis V583
action filter_type
action find
entity ABC transporter ATP-binding protein    EF3200
relation found in taxon
type infraspecific name
['ABC transporter ATP-binding protein    EF3200', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?h WHERE { resource:ABC_transporter_ATP-binding_protein____EF3200 property:found_in_taxon ?h . ?h rdf:type ontology:infraspecific_name }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23501536
P681
Q5058355
USER
What is a component of that nutrient ?
(Q21102965,P681,c(Q5058355))
action filter_type
action find
entity Q23501536
relation P681
type Q5058355
['Q21102965', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?n WHERE { resource:Q23501536 property:P681 ?n . ?n rdf:type ontology:Q5058355 }
ABC transporter ATP-binding protein    EF3200
action filter_type
action find
entity ABC transporter ATP-binding protein    EF3200
relation cell component
type cellular component
['Enterococcus faecalis V583', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?n WHERE { resource:ABC_transporter_ATP-binding_protein____EF3200 property:cell_component ?n . ?n rdf:type ontology:cellular_component }
[]
cellular component
Q29548
SYSTEM
plasma membrane
Q29548
(Q21102965,P681,c(Q5058355))
action filter_type
action find
entity Q23501536
relation P681
type Q5058355
A component of that nutrient is the [ANSWER]
['Q21102965', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?n WHERE { resource:Q23501536 property:P681 ?n . ?n rdf:type ontology:Q5058355 }
plasma membrane
A component of that nutrient is the plasma membrane
plasma membrane
action filter_type
action find
entity ABC transporter ATP-binding protein    EF3200
relation cell component
type cellular component
['Enterococcus faecalis V583', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?n WHERE { resource:ABC_transporter_ATP-binding_protein____EF3200 property:cell_component ?n . ?n rdf:type ontology:cellular_component }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Mult. entity type|Indirect
P361
Q5058355 Q5058355 Q15989253
USER
How many cellular components are less number of cellular components and parts a component of than that cellular component ?
(c(Q5058355)|c(Q15989253),P361,c(Q5058355))
action count
action less
action union
action find_reverse_tuple_counts
relation P361
type Q5058355
type Q5058355
action find_reverse_tuple_counts
relation P361
type Q5058355
type Q15989253
action count
action filter_multi_types
action find_reverse
entity Q29548
relation P361
type Q5058355
type Q15989253
[[{'concept': 'Q5058355'}, {'concept': 'Q15989253'}], 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ( COUNT ( ?i ) AS ?g ) WHERE { { SELECT DISTINCT ?i ( COUNT ( ?h ) AS ?t ) WHERE { { ?h property:P361 ?i . ?i rdf:type ontology:Q5058355 . ?h rdf:type ontology:Q5058355 } UNION { ?h property:P361 ?i . ?i rdf:type ontology:Q5058355 . ?h rdf:type ontology:Q15989253 } } GROUP BY ?i } . { SELECT DISTINCT ( COUNT ( ?k ) AS ?b ) WHERE { ?k property:P361 resource:Q29548 . { VALUES ( ?r ) { ( ontology:Q15989253 ) ( ontology:Q5058355 ) } . ?k rdf:type ?r } } } . FILTER ( ?t < ?b ) }
action count
action less
action union
action find_reverse_tuple_counts
relation part of
type cellular component
type cellular component
action find_reverse_tuple_counts
relation part of
type cellular component
type part
action count
action filter_multi_types
action find_reverse
entity plasma membrane
relation part of
type cellular component
type part
[[{'concept': 'cellular component'}, {'concept': 'part'}], 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ( COUNT ( ?i ) AS ?g ) WHERE { { SELECT DISTINCT ?i ( COUNT ( ?h ) AS ?t ) WHERE { { ?h property:part_of ?i . ?i rdf:type ontology:cellular_component . ?h rdf:type ontology:cellular_component } UNION { ?h property:part_of ?i . ?i rdf:type ontology:cellular_component . ?h rdf:type ontology:part } } GROUP BY ?i } . { SELECT DISTINCT ( COUNT ( ?k ) AS ?b ) WHERE { ?k property:part_of resource:plasma_membrane . { VALUES ( ?r ) { ( ontology:part ) ( ontology:cellular_component ) } . ?k rdf:type ?r } } } . FILTER ( ?t < ?b ) }
[]
cellular component cellular component part
SYSTEM
75
Q22329450 Q15320191 Q14912978 Q14864171 Q14876131 Q1604780 Q22327622 Q14860843 Q22327686 Q22327683 Q22330482 Q22326188 Q22330431 Q189094 Q24576572 Q3824358 Q14864391 Q22328085 Q21095183 Q14905221 Q22327411 Q22327418 Q22329159 Q22329397 Q14353100 Q22327884 Q21423046 Q47263 Q22327652 Q22329848 Q180436 Q22329846 Q22329160 Q24570682 Q22330051 Q22327498 Q14911512 Q14819352 Q22327494 Q22327889 Q14762605 Q14864266 Q21750262 Q21198990 Q776995 Q22329401 Q24570673 Q14349538 Q22328884 Q22329076 Q22330231 Q5419646 Q21126899 Q22325459 Q22327714 Q22327805 Q21107481 Q22327505 Q21102478 Q22327502 Q22327500 Q138639 Q22329104 Q21095308 Q14864857 Q1065756 Q79927 Q180951 Q14864520 Q22328105 Q14860546 Q14860540 Q14864866 Q6414172 Q193825
(c(Q5058355)|c(Q15989253),P361,c(Q5058355))
action count
action less
action union
action find_reverse_tuple_counts
relation P361
type Q5058355
type Q5058355
action find_reverse_tuple_counts
relation P361
type Q5058355
type Q15989253
action count
action filter_multi_types
action find_reverse
entity Q29548
relation P361
type Q5058355
type Q15989253
[ANSWER]
[[{'concept': 'Q5058355'}, {'concept': 'Q15989253'}], 'P361', {'concept': 'Q5058355'}]
SELECT DISTINCT ( COUNT ( ?i ) AS ?g ) WHERE { { SELECT DISTINCT ?i ( COUNT ( ?h ) AS ?t ) WHERE { { ?h property:P361 ?i . ?i rdf:type ontology:Q5058355 . ?h rdf:type ontology:Q5058355 } UNION { ?h property:P361 ?i . ?i rdf:type ontology:Q5058355 . ?h rdf:type ontology:Q15989253 } } GROUP BY ?i } . { SELECT DISTINCT ( COUNT ( ?k ) AS ?b ) WHERE { ?k property:P361 resource:Q29548 . { VALUES ( ?r ) { ( ontology:Q15989253 ) ( ontology:Q5058355 ) } . ?k rdf:type ?r } } } . FILTER ( ?t < ?b ) }
lateral part of cell synaptic cleft mitochondrial nucleoid cell periphery compact myelin hemidesmosome side of membrane nuclear outer membrane prospore membrane eisosome ventral disc supernumerary microtubule array aster unencapsulated part of cell cell surface presynaptic endosome membrane intracellular intracellular organelle external encapsulating structure dendritic spine head symbiont-containing vacuole membrane extracellular space of host host ventral disc microtubule array cluster of actin-based cell projections cell projection cellular bud membrane-bounded organelle chloroplast whole membrane icosahedral viral capsid, collar cilium icosahedral viral capsid, neck ventral disc overlap zone spine apparatus membrane dinoflagellate hypocone postsynaptic endocytic zone stereocilium respiratory chain postsynaptic endosome cell trailing edge midbody cell-substrate junction cell division site periplasmic space neuromuscular junction pellicle postsynaptic endosome membrane apical part of cell organellar ribosome plastid nucleoid dinoflagellate epicone excitatory synapse cell tip sperm individualization complex coated membrane photosynthetic membrane site of polarized growth presynaptic endosome other organism cell presynaptic active zone cytoplasmic component presynaptic endocytic zone peroxisome germ tube retromer complex cell leading edge melanosome endoplasmic reticulum chromatin extrinsic component of membrane cell septum basal part of cell clathrin-coated pit cell body kinocilium extracellular matrix
75
action count
action less
action union
action find_reverse_tuple_counts
relation part of
type cellular component
type cellular component
action find_reverse_tuple_counts
relation part of
type cellular component
type part
action count
action filter_multi_types
action find_reverse
entity plasma membrane
relation part of
type cellular component
type part
[[{'concept': 'cellular component'}, {'concept': 'part'}], 'part of', {'concept': 'cellular component'}]
SELECT DISTINCT ( COUNT ( ?i ) AS ?g ) WHERE { { SELECT DISTINCT ?i ( COUNT ( ?h ) AS ?t ) WHERE { { ?h property:part_of ?i . ?i rdf:type ontology:cellular_component . ?h rdf:type ontology:cellular_component } UNION { ?h property:part_of ?i . ?i rdf:type ontology:cellular_component . ?h rdf:type ontology:part } } GROUP BY ?i } . { SELECT DISTINCT ( COUNT ( ?k ) AS ?b ) WHERE { ?k property:part_of resource:plasma_membrane . { VALUES ( ?r ) { ( ontology:part ) ( ontology:cellular_component ) } . ?k rdf:type ?r } } } . FILTER ( ?t < ?b ) }
[]
Quantitative Reasoning (All)
Quantitative|Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q181394 Q79529 Q181394
USER
Which nutrients do exactly 8 chemical substances and nutrients interact with ?
(c(Q79529)|c(Q181394),P129,c(Q181394))
action equal
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
value 8
[[{'concept': 'Q79529'}, {'concept': 'Q181394'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?o WHERE { { SELECT DISTINCT ( COUNT ( ?s ) AS ?u ) ?o WHERE { ?s rdf:type ?c . VALUES ( ?c ) { ( ontology:Q79529 ) ( ontology:Q181394 ) } } GROUP BY ?o } . FILTER ( ?u = 8 ) }
action equal
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
value 8
[[{'concept': 'chemical substance'}, {'concept': 'nutrient'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?o WHERE { { SELECT DISTINCT ( COUNT ( ?s ) AS ?u ) ?o WHERE { ?s rdf:type ?c . VALUES ( ?c ) { ( ontology:chemical_substance ) ( ontology:nutrient ) } } GROUP BY ?o } . FILTER ( ?u = 8 ) }
[]
nutrient chemical substance nutrient
Q21115815 Q21115819 Q21115816
SYSTEM
Glutamate receptor ionotropic, NMDA 2A, Glutamate receptor ionotropic, NMDA 2C, Glutamate receptor ionotropic, NMDA 2B
Q5512777 Q311568 Q21115815 Q21115816 Q21115819 Q21130911 Q15324694 Q21109359 Q15324415
(c(Q79529)|c(Q181394),P129,c(Q181394))
action equal
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
value 8
[ANSWERS]
[[{'concept': 'Q79529'}, {'concept': 'Q181394'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?o WHERE { { SELECT DISTINCT ( COUNT ( ?s ) AS ?u ) ?o WHERE { ?s rdf:type ?c . VALUES ( ?c ) { ( ontology:Q79529 ) ( ontology:Q181394 ) } } GROUP BY ?o } . FILTER ( ?u = 8 ) }
Gamma-aminobutyric acid receptor subunit alpha-4 Histamine H2 receptor Glutamate receptor ionotropic, NMDA 2A Glutamate receptor ionotropic, NMDA 2B Glutamate receptor ionotropic, NMDA 2C Glutamate receptor ionotropic, NMDA 2D Transient receptor potential cation channel subfamily V member 3 5-hydroxytryptamine receptor 5A Transient receptor potential cation channel subfamily M member 8
Which nutrients exactly 8 chemical substances and nutrients interact with
Glutamate receptor ionotropic, NMDA 2A Glutamate receptor ionotropic, NMDA 2C Glutamate receptor ionotropic, NMDA 2B
action equal
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
value 8
[[{'concept': 'chemical substance'}, {'concept': 'nutrient'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?o WHERE { { SELECT DISTINCT ( COUNT ( ?s ) AS ?u ) ?o WHERE { ?s rdf:type ?c . VALUES ( ?c ) { ( ontology:chemical_substance ) ( ontology:nutrient ) } } GROUP BY ?o } . FILTER ( ?u = 8 ) }
[]
Verification (Boolean) (All)
Verification|one entity, multiple entities (as object) referred indirectly
Q15634017
P129
Q79529
USER
Does diprafenone can communicate with those nutrients ?
(Q15634017,P129,Q21115815) (Q15634017,P129,Q21115819) (Q15634017,P129,Q21115816)
action is_in
entity prev_answer
action find
entity Q15634017
relation P129
['Q15634017', 'P129', 'Q21115815'] ['Q15634017', 'P129', 'Q21115819'] ['Q15634017', 'P129', 'Q21115816']
ASK WHERE { VALUES ( ?k ) { ( resource:Q5512777 ) ( resource:Q311568 ) ( resource:Q21115815 ) } . resource:Q15634017 property:P129 ?k }
diprafenone
action is_in
entity prev_answer
action find
entity diprafenone
relation physically interacts with
['diprafenone', 'physically interacts with', 'Glutamate receptor ionotropic, NMDA 2A'] ['diprafenone', 'physically interacts with', 'Glutamate receptor ionotropic, NMDA 2C'] ['diprafenone', 'physically interacts with', 'Glutamate receptor ionotropic, NMDA 2B']
ASK WHERE { VALUES ( ?k ) { ( resource:Gamma-aminobutyric_acid_receptor_subunit_alpha-4 ) ( resource:Histamine_H2_receptor ) ( resource:Glutamate_receptor_ionotropic,_NMDA_2A ) } . resource:diprafenone property:physically_interacts_with ?k }
[]
chemical substance
SYSTEM
NO
(Q15634017,P129,Q21115815) (Q15634017,P129,Q21115819) (Q15634017,P129,Q21115816)
action is_in
entity prev_answer
action find
entity Q15634017
relation P129
[ANSWER]
['Q15634017', 'P129', 'Q21115815'] ['Q15634017', 'P129', 'Q21115819'] ['Q15634017', 'P129', 'Q21115816']
ASK WHERE { VALUES ( ?k ) { ( resource:Q5512777 ) ( resource:Q311568 ) ( resource:Q21115815 ) } . resource:Q15634017 property:P129 ?k }
No
action is_in
entity prev_answer
action find
entity diprafenone
relation physically interacts with
['diprafenone', 'physically interacts with', 'Glutamate receptor ionotropic, NMDA 2A'] ['diprafenone', 'physically interacts with', 'Glutamate receptor ionotropic, NMDA 2C'] ['diprafenone', 'physically interacts with', 'Glutamate receptor ionotropic, NMDA 2B']
ASK WHERE { VALUES ( ?k ) { ( resource:Gamma-aminobutyric_acid_receptor_subunit_alpha-4 ) ( resource:Histamine_H2_receptor ) ( resource:Glutamate_receptor_ionotropic,_NMDA_2A ) } . resource:diprafenone property:physically_interacts_with ?k }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q21115819 Q6841079
P129
Q79529
USER
Does Glutamate receptor ionotropic, NMDA 2C interact with d-CCPene ?
(Q21115819,P129,Q6841079)
action is_in
entity Q6841079
action find
entity Q21115819
relation P129
['Q21115819', 'P129', 'Q6841079']
ASK WHERE { resource:Q21115819 property:P129 resource:Q6841079 }
Glutamate receptor ionotropic, NMDA 2C d-CCPene
action is_in
entity d-CCPene
action find
entity Glutamate receptor ionotropic, NMDA 2C
relation physically interacts with
['Glutamate receptor ionotropic, NMDA 2C', 'physically interacts with', 'd-CCPene']
ASK WHERE { resource:Glutamate_receptor_ionotropic,_NMDA_2C property:physically_interacts_with resource:d-CCPene }
[]
chemical substance
SYSTEM
YES
(Q21115819,P129,Q6841079)
action is_in
entity Q6841079
action find
entity Q21115819
relation P129
[ANSWER]
['Q21115819', 'P129', 'Q6841079']
ASK WHERE { resource:Q21115819 property:P129 resource:Q6841079 }
Yes
action is_in
entity d-CCPene
action find
entity Glutamate receptor ionotropic, NMDA 2C
relation physically interacts with
['Glutamate receptor ionotropic, NMDA 2C', 'physically interacts with', 'd-CCPene']
ASK WHERE { resource:Glutamate_receptor_ionotropic,_NMDA_2C property:physically_interacts_with resource:d-CCPene }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q21115816 Q27453866
P129
Q79529
USER
Does Glutamate receptor ionotropic, NMDA 2B interact with 5-hydroxy-2-[4-(1H-tetrazol-5-yl)phenyl]pyrimidin-4(3H)-one ?
(Q21115816,P129,Q27453866)
action is_in
entity Q27453866
action find
entity Q21115816
relation P129
['Q21115816', 'P129', 'Q27453866']
ASK WHERE { resource:Q21115816 property:P129 resource:Q27453866 }
Glutamate receptor ionotropic, NMDA 2B 5-hydroxy-2-[4-(1H-tetrazol-5-yl)phenyl]pyrimidin-4(3H)-one
action is_in
entity 5-hydroxy-2-[4-(1H-tetrazol-5-yl)phenyl]pyrimidin-4(3H)-one
action find
entity Glutamate receptor ionotropic, NMDA 2B
relation physically interacts with
['Glutamate receptor ionotropic, NMDA 2B', 'physically interacts with', '5-hydroxy-2-[4-(1H-tetrazol-5-yl)phenyl]pyrimidin-4(3H)-one']
ASK WHERE { resource:Glutamate_receptor_ionotropic,_NMDA_2B property:physically_interacts_with resource:5-hydroxy-2-[4-(1H-tetrazol-5-yl)phenyl]pyrimidin-4(3H)-one }
[]
chemical substance
SYSTEM
NO
(Q21115816,P129,Q27453866)
action is_in
entity Q27453866
action find
entity Q21115816
relation P129
[ANSWER]
['Q21115816', 'P129', 'Q27453866']
ASK WHERE { resource:Q21115816 property:P129 resource:Q27453866 }
No
action is_in
entity 5-hydroxy-2-[4-(1H-tetrazol-5-yl)phenyl]pyrimidin-4(3H)-one
action find
entity Glutamate receptor ionotropic, NMDA 2B
relation physically interacts with
['Glutamate receptor ionotropic, NMDA 2B', 'physically interacts with', '5-hydroxy-2-[4-(1H-tetrazol-5-yl)phenyl]pyrimidin-4(3H)-one']
ASK WHERE { resource:Glutamate_receptor_ionotropic,_NMDA_2B property:physically_interacts_with resource:5-hydroxy-2-[4-(1H-tetrazol-5-yl)phenyl]pyrimidin-4(3H)-one }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q24141666 Q21117704
P702
Q863908
USER
Which nucleic acid sequences encodes Gap junction protein or EpaQ    ECs3724 ?
OR((Q21117704,P702,c(Q863908)), (Q24141666,P702,c(Q863908)))
action filter_type
action union
action find
entity Q21117704
relation P702
action find
entity Q24141666
relation P702
type Q863908
{'OR': [['Q21117704', 'P702', {'concept': 'Q863908'}], ['Q24141666', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?k WHERE { ?k rdf:type ontology:Q863908 . { { resource:Q21117704 property:P702 ?k } UNION { resource:Q24141666 property:P702 ?k } } }
EpaQ    ECs3724 Gap junction protein
action filter_type
action union
action find
entity Gap junction protein
relation encoded by
action find
entity EpaQ    ECs3724
relation encoded by
type nucleic acid sequence
{'OR': [['Gap junction protein', 'encoded by', {'concept': 'nucleic acid sequence'}], ['EpaQ    ECs3724', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?k WHERE { ?k rdf:type ontology:nucleic_acid_sequence . { { resource:Gap_junction_protein property:encoded_by ?k } UNION { resource:EpaQ____ECs3724 property:encoded_by ?k } } }
[]
nucleic acid sequence
Q18025961 Q23124868
SYSTEM
GJA5, EpaQ    ECs3724
Q18025961 Q23124868
OR((Q21117704,P702,c(Q863908)), (Q24141666,P702,c(Q863908)))
action filter_type
action union
action find
entity Q21117704
relation P702
action find
entity Q24141666
relation P702
type Q863908
[ANSWERS]
{'OR': [['Q21117704', 'P702', {'concept': 'Q863908'}], ['Q24141666', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?k WHERE { ?k rdf:type ontology:Q863908 . { { resource:Q21117704 property:P702 ?k } UNION { resource:Q24141666 property:P702 ?k } } }
GJA5 EpaQ    ECs3724
GJA5 and EpaQ ECs3724 encode Gap junction protein or EpaQ ECs3724
GJA5 EpaQ    ECs3724
action filter_type
action union
action find
entity Gap junction protein
relation encoded by
action find
entity EpaQ    ECs3724
relation encoded by
type nucleic acid sequence
{'OR': [['Gap junction protein', 'encoded by', {'concept': 'nucleic acid sequence'}], ['EpaQ    ECs3724', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?k WHERE { ?k rdf:type ontology:nucleic_acid_sequence . { { resource:Gap_junction_protein property:encoded_by ?k } UNION { resource:EpaQ____ECs3724 property:encoded_by ?k } } }
[]
Quantitative Reasoning (All)
Quantitative|Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P361
Q5058355 Q15989253 Q5058355
USER
Which cellular components are a component of approximately 2 cellular components and parts ?
(c(Q5058355),P361,c(Q5058355)|c(Q15989253))
action approx
action union
action find_tuple_counts
relation P361
type Q5058355
type Q5058355
action find_tuple_counts
relation P361
type Q5058355
type Q15989253
value 2
[{'concept': 'Q5058355'}, 'P361', [{'concept': 'Q5058355'}, {'concept': 'Q15989253'}]]
SELECT DISTINCT ?m WHERE { { SELECT DISTINCT ( COUNT ( ?w ) AS ?k ) ?m WHERE { { ?m property:P361 ?w . ?m rdf:type ontology:Q5058355 . ?w rdf:type ontology:Q5058355 } UNION { ?m property:P361 ?w . ?m rdf:type ontology:Q5058355 . ?w rdf:type ontology:Q15989253 } } GROUP BY ?m } . FILTER ( ?k = 2 ) }
action approx
action union
action find_tuple_counts
relation part of
type cellular component
type cellular component
action find_tuple_counts
relation part of
type cellular component
type part
value 2
[{'concept': 'cellular component'}, 'part of', [{'concept': 'cellular component'}, {'concept': 'part'}]]
SELECT DISTINCT ?m WHERE { { SELECT DISTINCT ( COUNT ( ?w ) AS ?k ) ?m WHERE { { ?m property:part_of ?w . ?m rdf:type ontology:cellular_component . ?w rdf:type ontology:cellular_component } UNION { ?m property:part_of ?w . ?m rdf:type ontology:cellular_component . ?w rdf:type ontology:part } } GROUP BY ?m } . FILTER ( ?k = 2 ) }
[]
cellular component part cellular component
Q22329451 Q21107992 Q22329159
SYSTEM
basolateral part of cell, ER ubiquitin ligase complex, ventral disc microtubule array
Q22329451 Q21107992 Q22329159 Q22327531 Q22327518
(c(Q5058355),P361,c(Q5058355)|c(Q15989253))
action approx
action union
action find_tuple_counts
relation P361
type Q5058355
type Q5058355
action find_tuple_counts
relation P361
type Q5058355
type Q15989253
value 2
[ANSWERS] are a component of approximately 2 cellular components and parts
[{'concept': 'Q5058355'}, 'P361', [{'concept': 'Q5058355'}, {'concept': 'Q15989253'}]]
SELECT DISTINCT ?m WHERE { { SELECT DISTINCT ( COUNT ( ?w ) AS ?k ) ?m WHERE { { ?m property:P361 ?w . ?m rdf:type ontology:Q5058355 . ?w rdf:type ontology:Q5058355 } UNION { ?m property:P361 ?w . ?m rdf:type ontology:Q5058355 . ?w rdf:type ontology:Q15989253 } } GROUP BY ?m } . FILTER ( ?k = 2 ) }
basolateral part of cell ER ubiquitin ligase complex ventral disc microtubule array clathrin coat of synaptic vesicle plasma membrane region
Basolateral part of cell, ER ubiquitin ligase complex and ventral disc microtubule array are a component of approximately 2 cellular components and parts
basolateral part of cell ER ubiquitin ligase complex ventral disc microtubule array
action approx
action union
action find_tuple_counts
relation part of
type cellular component
type cellular component
action find_tuple_counts
relation part of
type cellular component
type part
value 2
[{'concept': 'cellular component'}, 'part of', [{'concept': 'cellular component'}, {'concept': 'part'}]]
SELECT DISTINCT ?m WHERE { { SELECT DISTINCT ( COUNT ( ?w ) AS ?k ) ?m WHERE { { ?m property:part_of ?w . ?m rdf:type ontology:cellular_component . ?w rdf:type ontology:cellular_component } UNION { ?m property:part_of ?w . ?m rdf:type ontology:cellular_component . ?w rdf:type ontology:part } } GROUP BY ?m } . FILTER ( ?k = 2 ) }
[]
Clarification
Comparative|Count over More/Less|Single entity type|Indirect
P681
Q5058355 Q181394
USER
How many cellular components are the components of around the same number of nutrients as that cellular component ?
(c(Q181394),P681,c(Q5058355))
[{'concept': 'Q181394'}, 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?x ) WHERE { ?z property:P681 ?y . ?z rdf:type ontology:Q181394 . ?y rdf:type ontology:Q5058355 }
[{'concept': 'nutrient'}, 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?x ) WHERE { ?z property:cell_component ?y . ?z rdf:type ontology:nutrient . ?y rdf:type ontology:cellular_component }
[]
cellular component nutrient
Comparative|Count over More/Less|Single entity type|Clarification
Q22329159
SYSTEM
Did you mean ventral disc microtubule array ?
(c(Q181394),P681,c(Q5058355))
[ANSWER]
[{'concept': 'Q181394'}, 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?x ) WHERE { ?z property:P681 ?y . ?z rdf:type ontology:Q181394 . ?y rdf:type ontology:Q5058355 }
Did you mean ventral disc microtubule array ?
ventral disc microtubule array
[{'concept': 'nutrient'}, 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?x ) WHERE { ?z property:cell_component ?y . ?z rdf:type ontology:nutrient . ?y rdf:type ontology:cellular_component }
[]
Comparative Reasoning (Count) (All)
USER
No, I meant ER ubiquitin ligase complex. Could you tell me the answer for that?
(c(Q181394),P681,c(Q5058355))
Q21107992
[{'concept': 'Q181394'}, 'P681', {'concept': 'Q5058355'}]
[{'concept': 'nutrient'}, 'cell component', {'concept': 'cellular component'}]
[]
SYSTEM
144
Q7322268 Q21106124 Q21978575 Q21116315 Q14912978 Q14864171 Q21108229 Q22328732 Q21110192 Q21146508 Q14878067 Q14864978 Q24629101 Q14864977 Q14864971 Q1604780 Q21124326 Q21116899 Q14860843 Q22327688 Q22327479 Q22327686 Q14330626 Q22327683 Q21172343 Q21172341 Q24576567 Q21108045 Q671136 Q22326188 Q21469807 Q14877465 Q189094 Q14876131 Q24629096 Q22328493 Q21120634 Q14864391 Q14864390 Q14914004 Q21095183 Q14873624 Q21199165 Q14905221 Q22326802 Q21199358 Q21759948 Q21097473 Q21105647 Q21198643 Q21106212 Q21423046 Q14864382 Q14353100 Q22326799 Q14911512 Q22325164 Q26253851 Q21136996 Q21103154 Q14863372 Q21181370 Q420927 Q22327404 Q22327654 Q22327015 Q21109092 Q22327525 Q14905147 Q22329412 Q180436 Q22327092 Q21763002 Q15320191 Q21971414 Q21095089 Q22327884 Q14819352 Q21118409 Q14762605 Q14864266 Q21108411 Q21750262 Q21468808 Q21198990 Q21104759 Q14876059 Q21484280 Q21758669 Q22329407 Q22328605 Q14877492 Q14873267 Q22327128 Q21760978 Q21107992 Q22328801 Q5419646 Q21126899 Q14819441 Q1640852 Q21107481 Q21105674 Q21097505 Q22327033 Q14864663 Q14863683 Q21102478 Q14349538 Q22328819 Q138639 Q21120639 Q14330629 Q776995 Q21971286 Q21105988 Q21095308 Q21115425 Q14864857 Q14888035 Q1065756 Q22326843 Q180951 Q7168931 Q14906187 Q22327475 Q14864520 Q21112489 Q22328743 Q22328105 Q14860546 Q14860540 Q14864866 Q22328121 Q899827 Q6414172 Q21109697 Q22327736 Q14906135 Q22326919 Q14882095 Q21095620 Q193825 Q22327423
(c(Q181394),P681,c(Q5058355))
[ANSWER]
[{'concept': 'Q181394'}, 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?x ) WHERE { ?z property:P681 ?y . ?z rdf:type ontology:Q181394 . ?y rdf:type ontology:Q5058355 }
ribbon synapse viral capsid tripartite ATP-independent periplasmic transporter complex viral nucleocapsid mitochondrial nucleoid cell periphery subapical complex Pex17p-Pex14p docking complex organelle membrane contact site mucus layer organelle membrane lipopolysaccharide receptor complex glutamatergic synapse plasma membrane part succinate dehydrogenase complex hemidesmosome protein serine/threonine phosphatase complex complement component C1 complex nuclear outer membrane prospore membrane leading edge presynapse prospore membrane myelin sheath abaxonal region eisosome inner dense plaque of desmosome outer dense plaque of desmosome perisynaptic extracellular matrix molybdopterin synthase complex synaptic vesicle aster dolichyl-phosphate-mannose-protein mannosyltransferase complex receptor complex cell surface compact myelin GABA-ergic synapse cell envelope Sec protein transport complex interleukin-12 complex intracellular organelle synaptic vesicle membrane synaptic membrane dendritic spine head intercellular bridge type III protein secretion system complex symbiont-containing vacuole membrane endoplasmic reticulum palmitoyltransferase complex bacterial nucleoid NADH dehydrogenase complex cell pole transmembrane transporter complex riboflavin synthase complex GPI-anchor transamidase complex membrane-bounded organelle presynaptic active zone cell projection alpha-1,6-mannosyltransferase complex stereocilium protein-lipid complex integral component of spine apparatus membrane immunoglobulin complex, circulating inhibitory synapse myelin sheath outer membrane protein complex ribonucleoprotein complex annulate lamellae photosystem II oxygen evolving complex nuclear outer membrane-endoplasmic reticulum membrane network cytoplasmic side of dendritic spine plasma membrane intrinsic component of membrane cytoophidium cilium protein complex involved in cell adhesion polyphosphate kinase complex synaptic cleft plasma lipoprotein particle blood microparticle cellular bud respiratory chain hyaluranon cable midbody cell-substrate junction CNTFR-CLCF1 complex cell division site retromer, tubulation complex periplasmic space perinuclear endoplasmic reticulum membrane phosphatidylinositol 3-kinase complex retromer, cargo-selective complex type II protein secretion system complex envelope PET complex lateral loop cell-cell junction fatty acid beta-oxidation multienzyme complex type I protein secretion system complex ER ubiquitin ligase complex TRAPPI protein complex excitatory synapse cell tip fibrinogen complex Schmidt-Lanterman incisure site of polarized growth Nem1-Spo7 phosphatase complex dendritic spine neck DNA repair complex transcriptional repressor complex insulin-like growth factor binding protein complex other organism cell apical part of cell HICS complex peroxisome interleukin-23 complex myelin sheath adaxonal region neuromuscular junction oligosaccharyltransferase complex stereocilium membrane retromer complex Ire1 complex cell leading edge protein-DNA complex melanosome Dsc E3 ubiquitin ligase complex chromatin perivitelline space CRLF-CLCF1 complex postsynapse extrinsic component of membrane stereocilium tip RNA cap binding complex cell septum basal part of cell clathrin-coated pit cell body intracellular immature spore endomembrane system kinocilium cyclin-dependent protein kinase 5 holoenzyme complex chaperone-mediated autophagy translocation complex contractile ring aspartate carbamoyltransferase complex angiogenin-PRI complex Flemming body extracellular matrix extracellular organelle
144
[{'concept': 'nutrient'}, 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?x ) WHERE { ?z property:cell_component ?y . ?z rdf:type ontology:nutrient . ?y rdf:type ontology:cellular_component }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21115815
P680
Q44424
USER
Which chemical bonds represent molecular function of Glutamate receptor ionotropic, NMDA 2A ?
(Q21115815,P680,c(Q44424))
action filter_type
action find
entity Q21115815
relation P680
type Q44424
['Q21115815', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?g WHERE { resource:Q21115815 property:P680 ?g . ?g rdf:type ontology:Q44424 }
Glutamate receptor ionotropic, NMDA 2A
action filter_type
action find
entity Glutamate receptor ionotropic, NMDA 2A
relation molecular function
type chemical bond
['Glutamate receptor ionotropic, NMDA 2A', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?g WHERE { resource:Glutamate_receptor_ionotropic,_NMDA_2A property:molecular_function ?g . ?g rdf:type ontology:chemical_bond }
[]
chemical bond
Q14633865 Q13667380
SYSTEM
zinc ion binding, metal ion binding
Q14633865 Q13667380
(Q21115815,P680,c(Q44424))
action filter_type
action find
entity Q21115815
relation P680
type Q44424
The [ANSWERS] represent molecular function of Glutamate receptor ionotropic, NMDA 2A
['Q21115815', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?g WHERE { resource:Q21115815 property:P680 ?g . ?g rdf:type ontology:Q44424 }
zinc ion binding metal ion binding
The zinc ion binding and metal ion binding represent molecular function of Glutamate receptor ionotropic, NMDA 2A
zinc ion binding metal ion binding
action filter_type
action find
entity Glutamate receptor ionotropic, NMDA 2A
relation molecular function
type chemical bond
['Glutamate receptor ionotropic, NMDA 2A', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?g WHERE { resource:Glutamate_receptor_ionotropic,_NMDA_2A property:molecular_function ?g . ?g rdf:type ontology:chemical_bond }
[]