Simple Question (Direct)
Simple Question
Q21113084
P702
Q863908
USER
What encodes Choline transporter-like protein 5 ?
(Q21113084,P702,c(Q863908))
action filter_type
action find
entity Q21113084
relation P702
type Q863908
['Q21113084', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?o WHERE { resource:Q21113084 property:P702 ?o . ?o rdf:type ontology:Q863908 }
Choline transporter-like protein 5
action filter_type
action find
entity Choline transporter-like protein 5
relation encoded by
type nucleic acid sequence
['Choline transporter-like protein 5', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?o WHERE { resource:Choline_transporter-like_protein_5 property:encoded_by ?o . ?o rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18053307
SYSTEM
SLC44A5
Q18053307
(Q21113084,P702,c(Q863908))
action filter_type
action find
entity Q21113084
relation P702
type Q863908
[ANSWER] encodes Choline transporter-like protein 5
['Q21113084', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?o WHERE { resource:Q21113084 property:P702 ?o . ?o rdf:type ontology:Q863908 }
SLC44A5
SLC44A5 encodes Choline transporter-like protein 5
SLC44A5
action filter_type
action find
entity Choline transporter-like protein 5
relation encoded by
type nucleic acid sequence
['Choline transporter-like protein 5', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?o WHERE { resource:Choline_transporter-like_protein_5 property:encoded_by ?o . ?o rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21113084
P688
Q863908
USER
Which nucleic acid sequence encodes Choline transporter-like protein 5 ?
(c(Q863908),P688,Q21113084)
action filter_type
action find_reverse
entity Q21113084
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q21113084']
SELECT DISTINCT ?i WHERE { ?i property:P688 resource:Q21113084 . ?i rdf:type ontology:Q863908 }
Choline transporter-like protein 5
action filter_type
action find_reverse
entity Choline transporter-like protein 5
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Choline transporter-like protein 5']
SELECT DISTINCT ?i WHERE { ?i property:encodes resource:Choline_transporter-like_protein_5 . ?i rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18053307
SYSTEM
SLC44A5
Q18053307
(c(Q863908),P688,Q21113084)
action filter_type
action find_reverse
entity Q21113084
relation P688
type Q863908
[ANSWER] encodes Choline transporter-like protein 5
[{'concept': 'Q863908'}, 'P688', 'Q21113084']
SELECT DISTINCT ?i WHERE { ?i property:P688 resource:Q21113084 . ?i rdf:type ontology:Q863908 }
SLC44A5
SLC44A5 encodes Choline transporter-like protein 5
SLC44A5
action filter_type
action find_reverse
entity Choline transporter-like protein 5
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Choline transporter-like protein 5']
SELECT DISTINCT ?i WHERE { ?i property:encodes resource:Choline_transporter-like_protein_5 . ?i rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18053307
P684
Q863908
USER
What is an otrhologus gene for that one ?
(Q18053307,P684,c(Q863908))
action filter_type
action find
entity Q18053307
relation P684
type Q863908
['Q18053307', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?q WHERE { resource:Q18053307 property:P684 ?q . ?q rdf:type ontology:Q863908 }
SLC44A5
action filter_type
action find
entity SLC44A5
relation ortholog
type nucleic acid sequence
['SLC44A5', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?q WHERE { resource:SLC44A5 property:ortholog ?q . ?q rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18299019
SYSTEM
Slc44a5
Q18299019
(Q18053307,P684,c(Q863908))
action filter_type
action find
entity Q18053307
relation P684
type Q863908
An otrhologus gene for that one is the [ANSWER]
['Q18053307', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?q WHERE { resource:Q18053307 property:P684 ?q . ?q rdf:type ontology:Q863908 }
Slc44a5
An otrhologus gene for that one is the Slc44a5
Slc44a5
action filter_type
action find
entity SLC44A5
relation ortholog
type nucleic acid sequence
['SLC44A5', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?q WHERE { resource:SLC44A5 property:ortholog ?q . ?q rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q18053307
P703
Q16521
USER
Which taxon is SLC44A5 found in ?
(Q18053307,P703,c(Q16521))
action filter_type
action find
entity Q18053307
relation P703
type Q16521
['Q18053307', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?z WHERE { resource:Q18053307 property:P703 ?z . ?z rdf:type ontology:Q16521 }
SLC44A5
action filter_type
action find
entity SLC44A5
relation found in taxon
type taxon
['SLC44A5', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?z WHERE { resource:SLC44A5 property:found_in_taxon ?z . ?z rdf:type ontology:taxon }
[]
taxon
Q15978631
SYSTEM
Homo sapiens
Q15978631
(Q18053307,P703,c(Q16521))
action filter_type
action find
entity Q18053307
relation P703
type Q16521
SLC44 A5 is found in [ANSWER]
['Q18053307', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?z WHERE { resource:Q18053307 property:P703 ?z . ?z rdf:type ontology:Q16521 }
Homo sapiens
SLC44 A5 is found in Homo sapiens
Homo sapiens
action filter_type
action find
entity SLC44A5
relation found in taxon
type taxon
['SLC44A5', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?z WHERE { resource:SLC44A5 property:found_in_taxon ?z . ?z rdf:type ontology:taxon }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q15978631 Q7836550
P703
Q181394
USER
Is Treacle protein found in the taxon that one ?
(Q7836550,P703,Q15978631)
action is_in
entity Q15978631
action find
entity Q7836550
relation P703
['Q7836550', 'P703', 'Q15978631']
ASK WHERE { resource:Q7836550 property:P703 resource:Q15978631 }
Homo sapiens Treacle protein
action is_in
entity Homo sapiens
action find
entity Treacle protein
relation found in taxon
['Treacle protein', 'found in taxon', 'Homo sapiens']
ASK WHERE { resource:Treacle_protein property:found_in_taxon resource:Homo_sapiens }
[]
nutrient
SYSTEM
YES
(Q7836550,P703,Q15978631)
action is_in
entity Q15978631
action find
entity Q7836550
relation P703
[ANSWER]
['Q7836550', 'P703', 'Q15978631']
ASK WHERE { resource:Q7836550 property:P703 resource:Q15978631 }
Yes
action is_in
entity Homo sapiens
action find
entity Treacle protein
relation found in taxon
['Treacle protein', 'found in taxon', 'Homo sapiens']
ASK WHERE { resource:Treacle_protein property:found_in_taxon resource:Homo_sapiens }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23469962
P681
Q15989253
USER
Which is the cell component of heat shock protein GrpE    CT1485 ?
(Q23469962,P681,c(Q15989253))
action filter_type
action find
entity Q23469962
relation P681
type Q15989253
['Q23469962', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:Q15989253 . resource:Q23469962 property:P681 ?b }
heat shock protein GrpE    CT1485
action filter_type
action find
entity heat shock protein GrpE    CT1485
relation cell component
type part
['heat shock protein GrpE    CT1485', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:part . resource:heat_shock_protein_GrpE____CT1485 property:cell_component ?b }
[]
part
Q79899
SYSTEM
cytoplasm
Q79899
(Q23469962,P681,c(Q15989253))
action filter_type
action find
entity Q23469962
relation P681
type Q15989253
The cell component of heat shock protein GrpE CT1485 is a [ANSWER]
['Q23469962', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:Q15989253 . resource:Q23469962 property:P681 ?b }
cytoplasm
The cell component of heat shock protein GrpE CT1485 is a cytoplasm
cytoplasm
action filter_type
action find
entity heat shock protein GrpE    CT1485
relation cell component
type part
['heat shock protein GrpE    CT1485', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:part . resource:heat_shock_protein_GrpE____CT1485 property:cell_component ?b }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23469962
P682
Q2996394
USER
Which biological process is that nutrient involved in ?
(Q79899,P682,c(Q2996394))
action filter_type
action find
entity Q23469962
relation P682
type Q2996394
['Q79899', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?q WHERE { ?q rdf:type ontology:Q2996394 . resource:Q23469962 property:P682 ?q }
heat shock protein GrpE    CT1485
action filter_type
action find
entity heat shock protein GrpE    CT1485
relation biological process
type biological process
['cytoplasm', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?q WHERE { ?q rdf:type ontology:biological_process . resource:heat_shock_protein_GrpE____CT1485 property:biological_process ?q }
[]
biological process
Q847556
SYSTEM
protein folding
Q847556
(Q79899,P682,c(Q2996394))
action filter_type
action find
entity Q23469962
relation P682
type Q2996394
That nutrient is involved in [ANSWER]
['Q79899', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?q WHERE { ?q rdf:type ontology:Q2996394 . resource:Q23469962 property:P682 ?q }
protein folding
That nutrient is involved in protein folding
protein folding
action filter_type
action find
entity heat shock protein GrpE    CT1485
relation biological process
type biological process
['cytoplasm', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?q WHERE { ?q rdf:type ontology:biological_process . resource:heat_shock_protein_GrpE____CT1485 property:biological_process ?q }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Logical operators
Q15978631
P703
Q8386 Q11173
USER
How many drugs or chemical compounds are found in Homo sapiens ?
(c(Q8386),P703,Q15978631) (c(Q11173),P703,Q15978631)
action count
action union
action filter_type
action find_reverse
entity Q15978631
relation P703
type Q8386
action filter_type
action find_reverse
entity Q15978631
relation P703
type Q11173
[{'concept': 'Q8386'}, 'P703', 'Q15978631'] [{'concept': 'Q11173'}, 'P703', 'Q15978631']
SELECT DISTINCT ( COUNT ( ?h ) AS ?p ) WHERE { { ?h property:P703 resource:Q15978631 . ?h rdf:type ontology:Q8386 } UNION { ?h property:P703 resource:Q15978631 . ?h rdf:type ontology:Q11173 } }
Homo sapiens
action count
action union
action filter_type
action find_reverse
entity Homo sapiens
relation found in taxon
type drug
action filter_type
action find_reverse
entity Homo sapiens
relation found in taxon
type chemical compound
[{'concept': 'drug'}, 'found in taxon', 'Homo sapiens'] [{'concept': 'chemical compound'}, 'found in taxon', 'Homo sapiens']
SELECT DISTINCT ( COUNT ( ?h ) AS ?p ) WHERE { { ?h property:found_in_taxon resource:Homo_sapiens . ?h rdf:type ontology:drug } UNION { ?h property:found_in_taxon resource:Homo_sapiens . ?h rdf:type ontology:chemical_compound } }
[]
drug chemical compound
SYSTEM
14
Q407172 Q208360 Q183011 Q292982 Q200774 Q190875 Q407972 Q367700 Q6718329 Q24726011 Q39798 Q118551 Q417169 Q13645602
(c(Q8386),P703,Q15978631) (c(Q11173),P703,Q15978631)
action count
action union
action filter_type
action find_reverse
entity Q15978631
relation P703
type Q8386
action filter_type
action find_reverse
entity Q15978631
relation P703
type Q11173
[ANSWER]
[{'concept': 'Q8386'}, 'P703', 'Q15978631'] [{'concept': 'Q11173'}, 'P703', 'Q15978631']
SELECT DISTINCT ( COUNT ( ?h ) AS ?p ) WHERE { { ?h property:P703 resource:Q15978631 . ?h rdf:type ontology:Q8386 } UNION { ?h property:P703 resource:Q15978631 . ?h rdf:type ontology:Q11173 } }
Chorionic gonadotropin Lutropin alfa vasopressin Alpha-1-antitrypsin Follitropin beta cortisol chlorpromazine Cyclosporine MT-RNR1 Thyrotropin-releasing hormone Insulin Clarithromycin Urokinase MT-RNR2
14
action count
action union
action filter_type
action find_reverse
entity Homo sapiens
relation found in taxon
type drug
action filter_type
action find_reverse
entity Homo sapiens
relation found in taxon
type chemical compound
[{'concept': 'drug'}, 'found in taxon', 'Homo sapiens'] [{'concept': 'chemical compound'}, 'found in taxon', 'Homo sapiens']
SELECT DISTINCT ( COUNT ( ?h ) AS ?p ) WHERE { { ?h property:found_in_taxon resource:Homo_sapiens . ?h rdf:type ontology:drug } UNION { ?h property:found_in_taxon resource:Homo_sapiens . ?h rdf:type ontology:chemical_compound } }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Single entity type
Q14902079
P361
Q2996394 Q2996394
USER
How many biological processes are more number of biological processes a part of than T cell mediated cytotoxicity ?
(c(Q2996394),P361,c(Q2996394))
action count
action greater
action find_reverse_tuple_counts
relation P361
type Q2996394
type Q2996394
action count
action filter_type
action find
entity Q14902079
relation P361
type Q2996394
[{'concept': 'Q2996394'}, 'P361', {'concept': 'Q2996394'}]
SELECT DISTINCT ( COUNT ( ?k ) AS ?g ) WHERE { { SELECT DISTINCT ( COUNT ( ?s ) AS ?e ) WHERE { resource:Q14902079 property:P361 ?s . ?s rdf:type ontology:Q2996394 } } . FILTER ( ?j > ?e ) . { SELECT DISTINCT ?k ( COUNT ( ?x ) AS ?j ) WHERE { ?k rdf:type ontology:Q2996394 . ?x rdf:type ontology:Q2996394 . ?x property:P361 ?k } GROUP BY ?k } }
T cell mediated cytotoxicity
action count
action greater
action find_reverse_tuple_counts
relation part of
type biological process
type biological process
action count
action filter_type
action find
entity T cell mediated cytotoxicity
relation part of
type biological process
[{'concept': 'biological process'}, 'part of', {'concept': 'biological process'}]
SELECT DISTINCT ( COUNT ( ?k ) AS ?g ) WHERE { { SELECT DISTINCT ( COUNT ( ?s ) AS ?e ) WHERE { resource:T_cell_mediated_cytotoxicity property:part_of ?s . ?s rdf:type ontology:biological_process } } . FILTER ( ?j > ?e ) . { SELECT DISTINCT ?k ( COUNT ( ?x ) AS ?j ) WHERE { ?k rdf:type ontology:biological_process . ?x rdf:type ontology:biological_process . ?x property:part_of ?k } GROUP BY ?k } }
[]
biological process biological process
SYSTEM
20
Q14863467 Q21758676 Q14864210 Q163261 Q22294463 Q22289309 Q14904771 Q22271536 Q14860201 Q14863388 Q22270405 Q21104832 Q21122953 Q21104990 Q14864005 Q14863664 Q22279515 Q14645719 Q14897640 Q22299432
(c(Q2996394),P361,c(Q2996394))
action count
action greater
action find_reverse_tuple_counts
relation P361
type Q2996394
type Q2996394
action count
action filter_type
action find
entity Q14902079
relation P361
type Q2996394
[ANSWER]
[{'concept': 'Q2996394'}, 'P361', {'concept': 'Q2996394'}]
SELECT DISTINCT ( COUNT ( ?k ) AS ?g ) WHERE { { SELECT DISTINCT ( COUNT ( ?s ) AS ?e ) WHERE { resource:Q14902079 property:P361 ?s . ?s rdf:type ontology:Q2996394 } } . FILTER ( ?j > ?e ) . { SELECT DISTINCT ?k ( COUNT ( ?x ) AS ?j ) WHERE { ?k rdf:type ontology:Q2996394 . ?x rdf:type ontology:Q2996394 . ?x property:P361 ?k } GROUP BY ?k } }
immune system development carbon utilization anatomical structure morphogenesis acrosome reaction sperm chromatin decondensation oocyte nucleus localization involved in oocyte dorsal/ventral axis specification sperm chromatin condensation response to pheromone involved in conjugation with cellular fusion anatomical structure development response to external stimulus localization of cell synaptic vesicle exocytosis male pronucleus assembly spermatid nucleus differentiation ovulation cycle neurotransmitter secretion gene conversion at mating-type locus locomotory behavior synaptic vesicle docking nitrogen utilization
20
action count
action greater
action find_reverse_tuple_counts
relation part of
type biological process
type biological process
action count
action filter_type
action find
entity T cell mediated cytotoxicity
relation part of
type biological process
[{'concept': 'biological process'}, 'part of', {'concept': 'biological process'}]
SELECT DISTINCT ( COUNT ( ?k ) AS ?g ) WHERE { { SELECT DISTINCT ( COUNT ( ?s ) AS ?e ) WHERE { resource:T_cell_mediated_cytotoxicity property:part_of ?s . ?s rdf:type ontology:biological_process } } . FILTER ( ?j > ?e ) . { SELECT DISTINCT ?k ( COUNT ( ?x ) AS ?j ) WHERE { ?k rdf:type ontology:biological_process . ?x rdf:type ontology:biological_process . ?x property:part_of ?k } GROUP BY ?k } }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Single entity type|Incomplete
Q1914636
P361
Q2996394 Q2996394
USER
And how about activity?
(c(Q2996394),P361,c(Q2996394))
action count
action greater
action find_reverse_tuple_counts
relation P361
type Q2996394
type Q2996394
action count
action filter_type
action find
entity Q1914636
relation P361
type Q2996394
[{'concept': 'Q2996394'}, 'P361', {'concept': 'Q2996394'}]
SELECT DISTINCT ( COUNT ( ?h ) AS ?x ) WHERE { { SELECT DISTINCT ?h ( COUNT ( ?r ) AS ?z ) WHERE { ?r property:P361 ?h . ?h rdf:type ontology:Q2996394 . ?r rdf:type ontology:Q2996394 } GROUP BY ?h } . { SELECT DISTINCT ( COUNT ( ?y ) AS ?t ) WHERE { resource:Q1914636 property:P361 ?y . ?y rdf:type ontology:Q2996394 } } . FILTER ( ?z > ?t ) }
activity
action count
action greater
action find_reverse_tuple_counts
relation part of
type biological process
type biological process
action count
action filter_type
action find
entity activity
relation part of
type biological process
[{'concept': 'biological process'}, 'part of', {'concept': 'biological process'}]
SELECT DISTINCT ( COUNT ( ?h ) AS ?x ) WHERE { { SELECT DISTINCT ?h ( COUNT ( ?r ) AS ?z ) WHERE { ?r property:part_of ?h . ?h rdf:type ontology:biological_process . ?r rdf:type ontology:biological_process } GROUP BY ?h } . { SELECT DISTINCT ( COUNT ( ?y ) AS ?t ) WHERE { resource:activity property:part_of ?y . ?y rdf:type ontology:biological_process } } . FILTER ( ?z > ?t ) }
[]
biological process biological process
SYSTEM
20
Q14863467 Q21758676 Q14864210 Q163261 Q22294463 Q22289309 Q14904771 Q22271536 Q14860201 Q14863388 Q22270405 Q21104832 Q21122953 Q21104990 Q14864005 Q14863664 Q22279515 Q14645719 Q14897640 Q22299432
(c(Q2996394),P361,c(Q2996394))
action count
action greater
action find_reverse_tuple_counts
relation P361
type Q2996394
type Q2996394
action count
action filter_type
action find
entity Q1914636
relation P361
type Q2996394
[ANSWER]
[{'concept': 'Q2996394'}, 'P361', {'concept': 'Q2996394'}]
SELECT DISTINCT ( COUNT ( ?h ) AS ?x ) WHERE { { SELECT DISTINCT ?h ( COUNT ( ?r ) AS ?z ) WHERE { ?r property:P361 ?h . ?h rdf:type ontology:Q2996394 . ?r rdf:type ontology:Q2996394 } GROUP BY ?h } . { SELECT DISTINCT ( COUNT ( ?y ) AS ?t ) WHERE { resource:Q1914636 property:P361 ?y . ?y rdf:type ontology:Q2996394 } } . FILTER ( ?z > ?t ) }
immune system development carbon utilization anatomical structure morphogenesis acrosome reaction sperm chromatin decondensation oocyte nucleus localization involved in oocyte dorsal/ventral axis specification sperm chromatin condensation response to pheromone involved in conjugation with cellular fusion anatomical structure development response to external stimulus localization of cell synaptic vesicle exocytosis male pronucleus assembly spermatid nucleus differentiation ovulation cycle neurotransmitter secretion gene conversion at mating-type locus locomotory behavior synaptic vesicle docking nitrogen utilization
20
action count
action greater
action find_reverse_tuple_counts
relation part of
type biological process
type biological process
action count
action filter_type
action find
entity activity
relation part of
type biological process
[{'concept': 'biological process'}, 'part of', {'concept': 'biological process'}]
SELECT DISTINCT ( COUNT ( ?h ) AS ?x ) WHERE { { SELECT DISTINCT ?h ( COUNT ( ?r ) AS ?z ) WHERE { ?r property:part_of ?h . ?h rdf:type ontology:biological_process . ?r rdf:type ontology:biological_process } GROUP BY ?h } . { SELECT DISTINCT ( COUNT ( ?y ) AS ?t ) WHERE { resource:activity property:part_of ?y . ?y rdf:type ontology:biological_process } } . FILTER ( ?z > ?t ) }
[]