Simple Question (Direct)
Simple Question
Q23571155
P682
Q2996394
USER
What is the biological process that ammonium transporter    glr3061 is involved in ?
(Q23571155,P682,c(Q2996394))
action filter_type
action find
entity Q23571155
relation P682
type Q2996394
['Q23571155', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?y WHERE { resource:Q23571155 property:P682 ?y . ?y rdf:type ontology:Q2996394 }
ammonium transporter    glr3061
action filter_type
action find
entity ammonium transporter    glr3061
relation biological process
type biological process
['ammonium transporter    glr3061', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?y WHERE { resource:ammonium_transporter____glr3061 property:biological_process ?y . ?y rdf:type ontology:biological_process }
[]
biological process
Q22299432
SYSTEM
nitrogen utilization
Q22299432
(Q23571155,P682,c(Q2996394))
action filter_type
action find
entity Q23571155
relation P682
type Q2996394
The biological process that ammonium transporter glr3061 is involved in is h [ANSWER]
['Q23571155', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?y WHERE { resource:Q23571155 property:P682 ?y . ?y rdf:type ontology:Q2996394 }
nitrogen utilization
The biological process that ammonium transporter glr3061 is involved in is h nitrogen utilization
nitrogen utilization
action filter_type
action find
entity ammonium transporter    glr3061
relation biological process
type biological process
['ammonium transporter    glr3061', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?y WHERE { resource:ammonium_transporter____glr3061 property:biological_process ?y . ?y rdf:type ontology:biological_process }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23571155
P681
Q15989253
USER
Which is the cell component of that nutrient ?
(Q22299432,P681,c(Q15989253))
action filter_type
action find
entity Q23571155
relation P681
type Q15989253
['Q22299432', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:Q15989253 . resource:Q23571155 property:P681 ?j }
ammonium transporter    glr3061
action filter_type
action find
entity ammonium transporter    glr3061
relation cell component
type part
['nitrogen utilization', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:part . resource:ammonium_transporter____glr3061 property:cell_component ?j }
[]
part
Q14349455
SYSTEM
membrane
Q14349455
(Q22299432,P681,c(Q15989253))
action filter_type
action find
entity Q23571155
relation P681
type Q15989253
The [ANSWER] is the cell component of that nutrient
['Q22299432', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:Q15989253 . resource:Q23571155 property:P681 ?j }
membrane
The membrane is the cell component of that nutrient
membrane
action filter_type
action find
entity ammonium transporter    glr3061
relation cell component
type part
['nitrogen utilization', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:part . resource:ammonium_transporter____glr3061 property:cell_component ?j }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q21111805 Q23571155
P702
Q863908
USER
Which nucleic acid sequences genes encode ammonium transporter    glr3061 or Proteasome activator complex subunit 4 ?
OR((Q23571155,P702,c(Q863908)), (Q21111805,P702,c(Q863908)))
action filter_type
action union
action find
entity Q23571155
relation P702
action find
entity Q21111805
relation P702
type Q863908
{'OR': [['Q23571155', 'P702', {'concept': 'Q863908'}], ['Q21111805', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?w WHERE { { ?v property:P702 ?w . VALUES ( ?v ) { ( resource:Q23571155 ) ( resource:Q21111805 ) } } . ?w rdf:type ontology:Q863908 }
Proteasome activator complex subunit 4 ammonium transporter    glr3061
action filter_type
action union
action find
entity ammonium transporter    glr3061
relation encoded by
action find
entity Proteasome activator complex subunit 4
relation encoded by
type nucleic acid sequence
{'OR': [['ammonium transporter    glr3061', 'encoded by', {'concept': 'nucleic acid sequence'}], ['Proteasome activator complex subunit 4', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?w WHERE { { ?v property:encoded_by ?w . VALUES ( ?v ) { ( resource:ammonium_transporter____glr3061 ) ( resource:Proteasome_activator_complex_subunit_4 ) } } . ?w rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18036988 Q23268998
SYSTEM
PSME4, ammonium transporter    glr3061
Q18036988 Q23268998
OR((Q23571155,P702,c(Q863908)), (Q21111805,P702,c(Q863908)))
action filter_type
action union
action find
entity Q23571155
relation P702
action find
entity Q21111805
relation P702
type Q863908
[ANSWERS]
{'OR': [['Q23571155', 'P702', {'concept': 'Q863908'}], ['Q21111805', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?w WHERE { { ?v property:P702 ?w . VALUES ( ?v ) { ( resource:Q23571155 ) ( resource:Q21111805 ) } } . ?w rdf:type ontology:Q863908 }
PSME4 ammonium transporter    glr3061
PSME4 and ammonium transporter glr3061 encode ammonium transporter glr3061 or Proteasome activator complex subunit 4
PSME4 ammonium transporter    glr3061
action filter_type
action union
action find
entity ammonium transporter    glr3061
relation encoded by
action find
entity Proteasome activator complex subunit 4
relation encoded by
type nucleic acid sequence
{'OR': [['ammonium transporter    glr3061', 'encoded by', {'concept': 'nucleic acid sequence'}], ['Proteasome activator complex subunit 4', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?w WHERE { { ?v property:encoded_by ?w . VALUES ( ?v ) { ( resource:ammonium_transporter____glr3061 ) ( resource:Proteasome_activator_complex_subunit_4 ) } } . ?w rdf:type ontology:nucleic_acid_sequence }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type
Q23571155
P702
Q863908
USER
How many nucleic acid sequences are the gene that encodes ammonium transporter    glr3061 ?
(Q23571155,P702,c(Q863908))
action count
action filter_type
action find
entity Q23571155
relation P702
type Q863908
['Q23571155', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ( COUNT ( ?l ) AS ?k ) WHERE { resource:Q23571155 property:P702 ?l . ?l rdf:type ontology:Q863908 }
ammonium transporter    glr3061
action count
action filter_type
action find
entity ammonium transporter    glr3061
relation encoded by
type nucleic acid sequence
['ammonium transporter    glr3061', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ( COUNT ( ?l ) AS ?k ) WHERE { resource:ammonium_transporter____glr3061 property:encoded_by ?l . ?l rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
SYSTEM
1
Q23268998
(Q23571155,P702,c(Q863908))
action count
action filter_type
action find
entity Q23571155
relation P702
type Q863908
[ANSWER]
['Q23571155', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ( COUNT ( ?l ) AS ?k ) WHERE { resource:Q23571155 property:P702 ?l . ?l rdf:type ontology:Q863908 }
ammonium transporter    glr3061
1
action count
action filter_type
action find
entity ammonium transporter    glr3061
relation encoded by
type nucleic acid sequence
['ammonium transporter    glr3061', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ( COUNT ( ?l ) AS ?k ) WHERE { resource:ammonium_transporter____glr3061 property:encoded_by ?l . ?l rdf:type ontology:nucleic_acid_sequence }
[]
Quantitative Reasoning (Count) (All)
Incomplete count-based ques
Q21171837
Q863908
USER
And what about Dehydrogenase/reductase SDR family member 1?
(Q21171837,P702,c(Q863908))
action count
action filter_type
action find
entity Q21171837
relation P702
type Q863908
['Q21171837', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ( COUNT ( ?r ) AS ?f ) WHERE { resource:Q21171837 property:P702 ?r . ?r rdf:type ontology:Q863908 }
Dehydrogenase/reductase SDR family member 1
action count
action filter_type
action find
entity Dehydrogenase/reductase SDR family member 1
relation encoded by
type nucleic acid sequence
['Dehydrogenase/reductase SDR family member 1', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ( COUNT ( ?r ) AS ?f ) WHERE { resource:Dehydrogenase/reductase_SDR_family_member_1 property:encoded_by ?r . ?r rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
SYSTEM
1
(Q21171837,P702,c(Q863908))
action count
action filter_type
action find
entity Q21171837
relation P702
type Q863908
[ANSWER]
['Q21171837', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ( COUNT ( ?r ) AS ?f ) WHERE { resource:Q21171837 property:P702 ?r . ?r rdf:type ontology:Q863908 }
1
action count
action filter_type
action find
entity Dehydrogenase/reductase SDR family member 1
relation encoded by
type nucleic acid sequence
['Dehydrogenase/reductase SDR family member 1', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ( COUNT ( ?r ) AS ?f ) WHERE { resource:Dehydrogenase/reductase_SDR_family_member_1 property:encoded_by ?r . ?r rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21171837
P703
Q16521
USER
Where is that nutrient found ?
action filter_type
action find
entity Q21171837
relation P703
type Q16521
SELECT DISTINCT ?g WHERE { resource:Q21171837 property:P703 ?g . ?g rdf:type ontology:Q16521 }
Dehydrogenase/reductase SDR family member 1
action filter_type
action find
entity Dehydrogenase/reductase SDR family member 1
relation found in taxon
type taxon
SELECT DISTINCT ?g WHERE { resource:Dehydrogenase/reductase_SDR_family_member_1 property:found_in_taxon ?g . ?g rdf:type ontology:taxon }
[]
taxon
Q15978631
SYSTEM
Homo sapiens
Q15978631
action filter_type
action find
entity Q21171837
relation P703
type Q16521
That nutrient is found in [ANSWER]
SELECT DISTINCT ?g WHERE { resource:Q21171837 property:P703 ?g . ?g rdf:type ontology:Q16521 }
Homo sapiens
That nutrient is found in Homo sapiens
Homo sapiens
action filter_type
action find
entity Dehydrogenase/reductase SDR family member 1
relation found in taxon
type taxon
SELECT DISTINCT ?g WHERE { resource:Dehydrogenase/reductase_SDR_family_member_1 property:found_in_taxon ?g . ?g rdf:type ontology:taxon }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21171837
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(c(Q863908),P688,Q15978631)
action filter_type
action find_reverse
entity Q21171837
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q15978631']
SELECT DISTINCT ?p WHERE { ?p property:P688 resource:Q21171837 . ?p rdf:type ontology:Q863908 }
Dehydrogenase/reductase SDR family member 1
action filter_type
action find_reverse
entity Dehydrogenase/reductase SDR family member 1
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Homo sapiens']
SELECT DISTINCT ?p WHERE { ?p property:encodes resource:Dehydrogenase/reductase_SDR_family_member_1 . ?p rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18049179
SYSTEM
DHRS1
Q18049179
(c(Q863908),P688,Q15978631)
action filter_type
action find_reverse
entity Q21171837
relation P688
type Q863908
[ANSWER] encodes that nutrient
[{'concept': 'Q863908'}, 'P688', 'Q15978631']
SELECT DISTINCT ?p WHERE { ?p property:P688 resource:Q21171837 . ?p rdf:type ontology:Q863908 }
DHRS1
DHRS1 encodes that nutrient
DHRS1
action filter_type
action find_reverse
entity Dehydrogenase/reductase SDR family member 1
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Homo sapiens']
SELECT DISTINCT ?p WHERE { ?p property:encodes resource:Dehydrogenase/reductase_SDR_family_member_1 . ?p rdf:type ontology:nucleic_acid_sequence }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type
Q18036988
P702
Q181394
USER
How many nutrients are encoded by PSME4 ?
(c(Q181394),P702,Q18036988)
action count
action filter_type
action find_reverse
entity Q18036988
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q18036988']
SELECT DISTINCT ( COUNT ( ?w ) AS ?p ) WHERE { ?w property:P702 resource:Q18036988 . ?w rdf:type ontology:Q181394 }
PSME4
action count
action filter_type
action find_reverse
entity PSME4
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'PSME4']
SELECT DISTINCT ( COUNT ( ?w ) AS ?p ) WHERE { ?w property:encoded_by resource:PSME4 . ?w rdf:type ontology:nutrient }
[]
nutrient
SYSTEM
1
Q21111805
(c(Q181394),P702,Q18036988)
action count
action filter_type
action find_reverse
entity Q18036988
relation P702
type Q181394
[ANSWER]
[{'concept': 'Q181394'}, 'P702', 'Q18036988']
SELECT DISTINCT ( COUNT ( ?w ) AS ?p ) WHERE { ?w property:P702 resource:Q18036988 . ?w rdf:type ontology:Q181394 }
Proteasome activator complex subunit 4
1
action count
action filter_type
action find_reverse
entity PSME4
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'PSME4']
SELECT DISTINCT ( COUNT ( ?w ) AS ?p ) WHERE { ?w property:encoded_by resource:PSME4 . ?w rdf:type ontology:nutrient }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18036988
P684
Q863908
USER
Which nucleic acid sequence is an orthologous gene for that one ?
action filter_type
action find
entity Q18036988
relation P684
type Q863908
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:Q863908 . resource:Q18036988 property:P684 ?m }
PSME4
action filter_type
action find
entity PSME4
relation ortholog
type nucleic acid sequence
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:nucleic_acid_sequence . resource:PSME4 property:ortholog ?m }
[]
nucleic acid sequence
Q18271705
SYSTEM
Psme4
Q18271705
action filter_type
action find
entity Q18036988
relation P684
type Q863908
[ANSWER] is an orthologous gene for that one
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:Q863908 . resource:Q18036988 property:P684 ?m }
Psme4
Psme4 is an orthologous gene for that one
Psme4
action filter_type
action find
entity PSME4
relation ortholog
type nucleic acid sequence
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:nucleic_acid_sequence . resource:PSME4 property:ortholog ?m }
[]