Simple Question (Direct)
Simple Question
Q23436324
P703
Q631147
USER
Where is ketodeoxygluconokinase    VF_A0988 found ?
(Q23436324,P703,c(Q631147))
action filter_type
action find
entity Q23436324
relation P703
type Q631147
['Q23436324', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?a WHERE { ?a rdf:type ontology:Q631147 . resource:Q23436324 property:P703 ?a }
ketodeoxygluconokinase    VF_A0988
action filter_type
action find
entity ketodeoxygluconokinase    VF_A0988
relation found in taxon
type infraspecific name
['ketodeoxygluconokinase    VF_A0988', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?a WHERE { ?a rdf:type ontology:infraspecific_name . resource:ketodeoxygluconokinase____VF_A0988 property:found_in_taxon ?a }
[]
infraspecific name
Q21102946
SYSTEM
Vibrio fischeri ES114
Q21102946
(Q23436324,P703,c(Q631147))
action filter_type
action find
entity Q23436324
relation P703
type Q631147
Ketodeoxygluconokinase VF_A0988 is found in [ANSWER]
['Q23436324', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?a WHERE { ?a rdf:type ontology:Q631147 . resource:Q23436324 property:P703 ?a }
Vibrio fischeri ES114
Ketodeoxygluconokinase VF_A0988 is found in Vibrio fischeri ES114
Vibrio fischeri ES114
action filter_type
action find
entity ketodeoxygluconokinase    VF_A0988
relation found in taxon
type infraspecific name
['ketodeoxygluconokinase    VF_A0988', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?a WHERE { ?a rdf:type ontology:infraspecific_name . resource:ketodeoxygluconokinase____VF_A0988 property:found_in_taxon ?a }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23436324
P688
Q863908
USER
Which nucleic acid sequence encodes ketodeoxygluconokinase    VF_A0988 ?
(c(Q863908),P688,Q23436324)
action filter_type
action find_reverse
entity Q23436324
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q23436324']
SELECT DISTINCT ?o WHERE { ?o rdf:type ontology:Q863908 . ?o property:P688 resource:Q23436324 }
ketodeoxygluconokinase    VF_A0988
action filter_type
action find_reverse
entity ketodeoxygluconokinase    VF_A0988
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'ketodeoxygluconokinase    VF_A0988']
SELECT DISTINCT ?o WHERE { ?o rdf:type ontology:nucleic_acid_sequence . ?o property:encodes resource:ketodeoxygluconokinase____VF_A0988 }
[]
nucleic acid sequence
Q23147417
SYSTEM
ketodeoxygluconokinase    VF_A0988
Q23147417
(c(Q863908),P688,Q23436324)
action filter_type
action find_reverse
entity Q23436324
relation P688
type Q863908
Ketodeoxygluconokinase VF A0988 encodes ketodeoxygluconokinase VF_A0988
[{'concept': 'Q863908'}, 'P688', 'Q23436324']
SELECT DISTINCT ?o WHERE { ?o rdf:type ontology:Q863908 . ?o property:P688 resource:Q23436324 }
ketodeoxygluconokinase    VF_A0988
Ketodeoxygluconokinase VF A0988 encodes ketodeoxygluconokinase VF_A0988
ketodeoxygluconokinase    VF_A0988
action filter_type
action find_reverse
entity ketodeoxygluconokinase    VF_A0988
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'ketodeoxygluconokinase    VF_A0988']
SELECT DISTINCT ?o WHERE { ?o rdf:type ontology:nucleic_acid_sequence . ?o property:encodes resource:ketodeoxygluconokinase____VF_A0988 }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q23147417 Q23621390
P702
Q181394
USER
Is LacI-type transcriptional regulator    BL0838 encoded by that nucleic acid sequence ?
(Q23621390,P702,Q23147417)
action is_in
entity Q23621390
action find
entity Q23147417
relation P702
['Q23621390', 'P702', 'Q23147417']
ASK WHERE { resource:Q23147417 property:P702 resource:Q23621390 }
ketodeoxygluconokinase    VF_A0988 LacI-type transcriptional regulator    BL0838
action is_in
entity LacI-type transcriptional regulator    BL0838
action find
entity ketodeoxygluconokinase    VF_A0988
relation encoded by
['LacI-type transcriptional regulator    BL0838', 'encoded by', 'ketodeoxygluconokinase    VF_A0988']
ASK WHERE { resource:ketodeoxygluconokinase____VF_A0988 property:encoded_by resource:LacI-type_transcriptional_regulator____BL0838 }
[]
nutrient
SYSTEM
NO
(Q23621390,P702,Q23147417)
action is_in
entity Q23621390
action find
entity Q23147417
relation P702
[ANSWER]
['Q23621390', 'P702', 'Q23147417']
ASK WHERE { resource:Q23147417 property:P702 resource:Q23621390 }
No
action is_in
entity LacI-type transcriptional regulator    BL0838
action find
entity ketodeoxygluconokinase    VF_A0988
relation encoded by
['LacI-type transcriptional regulator    BL0838', 'encoded by', 'ketodeoxygluconokinase    VF_A0988']
ASK WHERE { resource:ketodeoxygluconokinase____VF_A0988 property:encoded_by resource:LacI-type_transcriptional_regulator____BL0838 }
[]
Quantitative Reasoning (All)
Quantitative|Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q181394 Q181394 Q79529
USER
Which nutrients do exactly 9 nutrients or chemical substances communicate with ?
(c(Q181394)|c(Q79529),P129,c(Q181394))
action equal
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
value 9
[[{'concept': 'Q181394'}, {'concept': 'Q79529'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?w WHERE { { SELECT DISTINCT ( COUNT ( ?f ) AS ?t ) ?w WHERE { { ?f property:P129 ?w . ?w rdf:type ontology:Q181394 . ?f rdf:type ontology:Q79529 } UNION { ?f property:P129 ?w . ?w rdf:type ontology:Q181394 . ?f rdf:type ontology:Q181394 } } GROUP BY ?w } . FILTER ( ?t = 9 ) }
action equal
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
value 9
[[{'concept': 'nutrient'}, {'concept': 'chemical substance'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?w WHERE { { SELECT DISTINCT ( COUNT ( ?f ) AS ?t ) ?w WHERE { { ?f property:physically_interacts_with ?w . ?w rdf:type ontology:nutrient . ?f rdf:type ontology:chemical_substance } UNION { ?f property:physically_interacts_with ?w . ?w rdf:type ontology:nutrient . ?f rdf:type ontology:nutrient } } GROUP BY ?w } . FILTER ( ?t = 9 ) }
[]
nutrient nutrient chemical substance
Q413209 Q309513 Q21114585
SYSTEM
Transient receptor potential cation channel subfamily V member 1, Histamine H1 receptor, Gamma-aminobutyric acid receptor subunit alpha-6
Q309513 Q413209 Q21109365 Q21114585
(c(Q181394)|c(Q79529),P129,c(Q181394))
action equal
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
value 9
The [ANSWERS] exactly 9 nutrients or chemical substances communicate with
[[{'concept': 'Q181394'}, {'concept': 'Q79529'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?w WHERE { { SELECT DISTINCT ( COUNT ( ?f ) AS ?t ) ?w WHERE { { ?f property:P129 ?w . ?w rdf:type ontology:Q181394 . ?f rdf:type ontology:Q79529 } UNION { ?f property:P129 ?w . ?w rdf:type ontology:Q181394 . ?f rdf:type ontology:Q181394 } } GROUP BY ?w } . FILTER ( ?t = 9 ) }
Histamine H1 receptor Transient receptor potential cation channel subfamily V member 1 5-hydroxytryptamine receptor 4 Gamma-aminobutyric acid receptor subunit alpha-6
The Transient receptor potential cation channel subfamily V member 1, Histamine H1 receptor and Gamma-aminobutyric acid receptor subunit alpha-6 exactly 9 nutrients or chemical substances communicate with
Transient receptor potential cation channel subfamily V member 1 Histamine H1 receptor Gamma-aminobutyric acid receptor subunit alpha-6
action equal
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
value 9
[[{'concept': 'nutrient'}, {'concept': 'chemical substance'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?w WHERE { { SELECT DISTINCT ( COUNT ( ?f ) AS ?t ) ?w WHERE { { ?f property:physically_interacts_with ?w . ?w rdf:type ontology:nutrient . ?f rdf:type ontology:chemical_substance } UNION { ?f property:physically_interacts_with ?w . ?w rdf:type ontology:nutrient . ?f rdf:type ontology:nutrient } } GROUP BY ?w } . FILTER ( ?t = 9 ) }
[]
Clarification
Comparative|Count over More/Less|Single entity type|Indirect
P129
Q181394 Q181394
USER
How many nutrients do more number of nutrients communicate with than that nutrient ?
(c(Q181394),P129,c(Q181394))
[{'concept': 'Q181394'}, 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { ?z property:P129 ?z . ?z rdf:type ontology:Q181394 }
[{'concept': 'nutrient'}, 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { ?z property:physically_interacts_with ?z . ?z rdf:type ontology:nutrient }
[]
nutrient nutrient
Comparative|Count over More/Less|Single entity type|Clarification
Q21114585
SYSTEM
Did you mean Gamma-aminobutyric acid receptor subunit alpha-6 ?
(c(Q181394),P129,c(Q181394))
[ANSWER]
[{'concept': 'Q181394'}, 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { ?z property:P129 ?z . ?z rdf:type ontology:Q181394 }
Did you mean Gamma-aminobutyric acid receptor subunit alpha-6 ?
Gamma-aminobutyric acid receptor subunit alpha-6
[{'concept': 'nutrient'}, 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { ?z property:physically_interacts_with ?z . ?z rdf:type ontology:nutrient }
[]
Comparative Reasoning (Count) (All)
USER
Yes
(c(Q181394),P129,c(Q181394))
[{'concept': 'Q181394'}, 'P129', {'concept': 'Q181394'}]
[{'concept': 'nutrient'}, 'physically interacts with', {'concept': 'nutrient'}]
[]
SYSTEM
4
Q423510 Q3931282 Q315860 Q1979313
(c(Q181394),P129,c(Q181394))
[ANSWER]
[{'concept': 'Q181394'}, 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { ?z property:P129 ?z . ?z rdf:type ontology:Q181394 }
Amyloid beta A4 protein Calcitonin receptor Calcitonin Very low-density lipoprotein receptor
4
[{'concept': 'nutrient'}, 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { ?z property:physically_interacts_with ?z . ?z rdf:type ontology:nutrient }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q413209
P682
Q1057
USER
Which metabolic process is Transient receptor potential cation channel subfamily V member 1 involved in ?
(Q413209,P682,c(Q1057))
action filter_type
action find
entity Q413209
relation P682
type Q1057
['Q413209', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?b WHERE { resource:Q413209 property:P682 ?b . ?b rdf:type ontology:Q1057 }
Transient receptor potential cation channel subfamily V member 1
action filter_type
action find
entity Transient receptor potential cation channel subfamily V member 1
relation biological process
type metabolic process
['Transient receptor potential cation channel subfamily V member 1', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?b WHERE { resource:Transient_receptor_potential_cation_channel_subfamily_V_member_1 property:biological_process ?b . ?b rdf:type ontology:metabolic_process }
[]
metabolic process
Q14349667
SYSTEM
lipid metabolic process
Q14349667
(Q413209,P682,c(Q1057))
action filter_type
action find
entity Q413209
relation P682
type Q1057
The [ANSWER] is Transient receptor potential cation channel subfamily V member 1 involved in
['Q413209', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?b WHERE { resource:Q413209 property:P682 ?b . ?b rdf:type ontology:Q1057 }
lipid metabolic process
The lipid metabolic process is Transient receptor potential cation channel subfamily V member 1 involved in
lipid metabolic process
action filter_type
action find
entity Transient receptor potential cation channel subfamily V member 1
relation biological process
type metabolic process
['Transient receptor potential cation channel subfamily V member 1', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?b WHERE { resource:Transient_receptor_potential_cation_channel_subfamily_V_member_1 property:biological_process ?b . ?b rdf:type ontology:metabolic_process }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q413209
P681
Q5058355
USER
Which cellular components are the components of Transient receptor potential cation channel subfamily V member 1 ?
(Q413209,P681,c(Q5058355))
action filter_type
action find
entity Q413209
relation P681
type Q5058355
['Q413209', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?u WHERE { resource:Q413209 property:P681 ?u . ?u rdf:type ontology:Q5058355 }
Transient receptor potential cation channel subfamily V member 1
action filter_type
action find
entity Transient receptor potential cation channel subfamily V member 1
relation cell component
type cellular component
['Transient receptor potential cation channel subfamily V member 1', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?u WHERE { resource:Transient_receptor_potential_cation_channel_subfamily_V_member_1 property:cell_component ?u . ?u rdf:type ontology:cellular_component }
[]
cellular component
Q29548 Q14353100
SYSTEM
plasma membrane, cell projection
Q29548 Q14353100
(Q413209,P681,c(Q5058355))
action filter_type
action find
entity Q413209
relation P681
type Q5058355
The [ANSWERS] are the components of Transient receptor potential cation channel subfamily V member 1
['Q413209', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?u WHERE { resource:Q413209 property:P681 ?u . ?u rdf:type ontology:Q5058355 }
plasma membrane cell projection
The plasma membrane and cell projection are the components of Transient receptor potential cation channel subfamily V member 1
plasma membrane cell projection
action filter_type
action find
entity Transient receptor potential cation channel subfamily V member 1
relation cell component
type cellular component
['Transient receptor potential cation channel subfamily V member 1', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?u WHERE { resource:Transient_receptor_potential_cation_channel_subfamily_V_member_1 property:cell_component ?u . ?u rdf:type ontology:cellular_component }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P361
Q5058355 Q15989253 Q5058355
USER
How many cellular components are a component of approximately 3 cellular components and parts ?
(c(Q5058355),P361,c(Q5058355)|c(Q15989253))
action count
action approx
action union
action find_tuple_counts
relation P361
type Q5058355
type Q5058355
action find_tuple_counts
relation P361
type Q5058355
type Q15989253
value 3
[{'concept': 'Q5058355'}, 'P361', [{'concept': 'Q5058355'}, {'concept': 'Q15989253'}]]
SELECT DISTINCT ( COUNT ( ?f ) AS ?n ) WHERE { { SELECT DISTINCT ( COUNT ( ?j ) AS ?l ) ?f WHERE { { ?f property:P361 ?j . ?f rdf:type ontology:Q5058355 . ?j rdf:type ontology:Q5058355 } UNION { ?f property:P361 ?j . ?f rdf:type ontology:Q5058355 . ?j rdf:type ontology:Q15989253 } } GROUP BY ?f } . FILTER ( ?l = 3 ) }
action count
action approx
action union
action find_tuple_counts
relation part of
type cellular component
type cellular component
action find_tuple_counts
relation part of
type cellular component
type part
value 3
[{'concept': 'cellular component'}, 'part of', [{'concept': 'cellular component'}, {'concept': 'part'}]]
SELECT DISTINCT ( COUNT ( ?f ) AS ?n ) WHERE { { SELECT DISTINCT ( COUNT ( ?j ) AS ?l ) ?f WHERE { { ?f property:part_of ?j . ?f rdf:type ontology:cellular_component . ?j rdf:type ontology:cellular_component } UNION { ?f property:part_of ?j . ?f rdf:type ontology:cellular_component . ?j rdf:type ontology:part } } GROUP BY ?f } . FILTER ( ?l = 3 ) }
[]
cellular component part cellular component
SYSTEM
1
Q29548
(c(Q5058355),P361,c(Q5058355)|c(Q15989253))
action count
action approx
action union
action find_tuple_counts
relation P361
type Q5058355
type Q5058355
action find_tuple_counts
relation P361
type Q5058355
type Q15989253
value 3
[ANSWER]
[{'concept': 'Q5058355'}, 'P361', [{'concept': 'Q5058355'}, {'concept': 'Q15989253'}]]
SELECT DISTINCT ( COUNT ( ?f ) AS ?n ) WHERE { { SELECT DISTINCT ( COUNT ( ?j ) AS ?l ) ?f WHERE { { ?f property:P361 ?j . ?f rdf:type ontology:Q5058355 . ?j rdf:type ontology:Q5058355 } UNION { ?f property:P361 ?j . ?f rdf:type ontology:Q5058355 . ?j rdf:type ontology:Q15989253 } } GROUP BY ?f } . FILTER ( ?l = 3 ) }
plasma membrane
1
action count
action approx
action union
action find_tuple_counts
relation part of
type cellular component
type cellular component
action find_tuple_counts
relation part of
type cellular component
type part
value 3
[{'concept': 'cellular component'}, 'part of', [{'concept': 'cellular component'}, {'concept': 'part'}]]
SELECT DISTINCT ( COUNT ( ?f ) AS ?n ) WHERE { { SELECT DISTINCT ( COUNT ( ?j ) AS ?l ) ?f WHERE { { ?f property:part_of ?j . ?f rdf:type ontology:cellular_component . ?j rdf:type ontology:cellular_component } UNION { ?f property:part_of ?j . ?f rdf:type ontology:cellular_component . ?j rdf:type ontology:part } } GROUP BY ?f } . FILTER ( ?l = 3 ) }
[]