Simple Question (Direct)
Simple Question
Q21630504
P702
Q863908
USER
Which gene encodes DNA excision repair protein subunit A    FTT_1312c ?
(Q21630504,P702,c(Q863908))
action filter_type
action find
entity Q21630504
relation P702
type Q863908
['Q21630504', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?o WHERE { ?o rdf:type ontology:Q863908 . resource:Q21630504 property:P702 ?o }
DNA excision repair protein subunit A    FTT_1312c
action filter_type
action find
entity DNA excision repair protein subunit A    FTT_1312c
relation encoded by
type nucleic acid sequence
['DNA excision repair protein subunit A    FTT_1312c', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?o WHERE { ?o rdf:type ontology:nucleic_acid_sequence . resource:DNA_excision_repair_protein_subunit_A____FTT_1312c property:encoded_by ?o }
[]
nucleic acid sequence
Q21627162
SYSTEM
DNA excision repair protein subunit A    FTT_1312c
Q21627162
(Q21630504,P702,c(Q863908))
action filter_type
action find
entity Q21630504
relation P702
type Q863908
DNA excision repair protein subunit A FTT 1312c encodes DNA excision repair protein subunit A FTT_1312c
['Q21630504', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?o WHERE { ?o rdf:type ontology:Q863908 . resource:Q21630504 property:P702 ?o }
DNA excision repair protein subunit A    FTT_1312c
DNA excision repair protein subunit A FTT 1312c encodes DNA excision repair protein subunit A FTT_1312c
DNA excision repair protein subunit A    FTT_1312c
action filter_type
action find
entity DNA excision repair protein subunit A    FTT_1312c
relation encoded by
type nucleic acid sequence
['DNA excision repair protein subunit A    FTT_1312c', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?o WHERE { ?o rdf:type ontology:nucleic_acid_sequence . resource:DNA_excision_repair_protein_subunit_A____FTT_1312c property:encoded_by ?o }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21630504
P681
Q15989253
USER
Which part is a component of DNA excision repair protein subunit A    FTT_1312c ?
(Q21630504,P681,c(Q15989253))
action filter_type
action find
entity Q21630504
relation P681
type Q15989253
['Q21630504', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?x WHERE { resource:Q21630504 property:P681 ?x . ?x rdf:type ontology:Q15989253 }
DNA excision repair protein subunit A    FTT_1312c
action filter_type
action find
entity DNA excision repair protein subunit A    FTT_1312c
relation cell component
type part
['DNA excision repair protein subunit A    FTT_1312c', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?x WHERE { resource:DNA_excision_repair_protein_subunit_A____FTT_1312c property:cell_component ?x . ?x rdf:type ontology:part }
[]
part
Q79899
SYSTEM
cytoplasm
Q79899
(Q21630504,P681,c(Q15989253))
action filter_type
action find
entity Q21630504
relation P681
type Q15989253
[ANSWER] is a component of DNA excision repair protein subunit A FTT_1312c
['Q21630504', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?x WHERE { resource:Q21630504 property:P681 ?x . ?x rdf:type ontology:Q15989253 }
cytoplasm
Cytoplasm is a component of DNA excision repair protein subunit A FTT_1312c
cytoplasm
action filter_type
action find
entity DNA excision repair protein subunit A    FTT_1312c
relation cell component
type part
['DNA excision repair protein subunit A    FTT_1312c', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?x WHERE { resource:DNA_excision_repair_protein_subunit_A____FTT_1312c property:cell_component ?x . ?x rdf:type ontology:part }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21630504
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(c(Q863908),P688,Q79899)
action filter_type
action find_reverse
entity Q21630504
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q79899']
SELECT DISTINCT ?h WHERE { ?h property:P688 resource:Q21630504 . ?h rdf:type ontology:Q863908 }
DNA excision repair protein subunit A    FTT_1312c
action filter_type
action find_reverse
entity DNA excision repair protein subunit A    FTT_1312c
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'cytoplasm']
SELECT DISTINCT ?h WHERE { ?h property:encodes resource:DNA_excision_repair_protein_subunit_A____FTT_1312c . ?h rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q21627162
SYSTEM
DNA excision repair protein subunit A    FTT_1312c
Q21627162
(c(Q863908),P688,Q79899)
action filter_type
action find_reverse
entity Q21630504
relation P688
type Q863908
De DNA excision repair protein subunit A FTT 1312c encodes that nutrient
[{'concept': 'Q863908'}, 'P688', 'Q79899']
SELECT DISTINCT ?h WHERE { ?h property:P688 resource:Q21630504 . ?h rdf:type ontology:Q863908 }
DNA excision repair protein subunit A    FTT_1312c
De DNA excision repair protein subunit A FTT 1312c encodes that nutrient
DNA excision repair protein subunit A    FTT_1312c
action filter_type
action find_reverse
entity DNA excision repair protein subunit A    FTT_1312c
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'cytoplasm']
SELECT DISTINCT ?h WHERE { ?h property:encodes resource:DNA_excision_repair_protein_subunit_A____FTT_1312c . ?h rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q21627162 Q23548558
P702
Q181394
USER
Is ABC transporter substrate-binding lipoprotein    smi_0738 the gene that is encoded by that nucleic acid sequence ?
(Q23548558,P702,Q21627162)
action is_in
entity Q23548558
action find
entity Q21627162
relation P702
['Q23548558', 'P702', 'Q21627162']
ASK WHERE { resource:Q21627162 property:P702 resource:Q23548558 }
DNA excision repair protein subunit A    FTT_1312c ABC transporter substrate-binding lipoprotein    smi_0738
action is_in
entity ABC transporter substrate-binding lipoprotein    smi_0738
action find
entity DNA excision repair protein subunit A    FTT_1312c
relation encoded by
['ABC transporter substrate-binding lipoprotein    smi_0738', 'encoded by', 'DNA excision repair protein subunit A    FTT_1312c']
ASK WHERE { resource:DNA_excision_repair_protein_subunit_A____FTT_1312c property:encoded_by resource:ABC_transporter_substrate-binding_lipoprotein____smi_0738 }
[]
nutrient
SYSTEM
NO
(Q23548558,P702,Q21627162)
action is_in
entity Q23548558
action find
entity Q21627162
relation P702
[ANSWER]
['Q23548558', 'P702', 'Q21627162']
ASK WHERE { resource:Q21627162 property:P702 resource:Q23548558 }
No
action is_in
entity ABC transporter substrate-binding lipoprotein    smi_0738
action find
entity DNA excision repair protein subunit A    FTT_1312c
relation encoded by
['ABC transporter substrate-binding lipoprotein    smi_0738', 'encoded by', 'DNA excision repair protein subunit A    FTT_1312c']
ASK WHERE { resource:DNA_excision_repair_protein_subunit_A____FTT_1312c property:encoded_by resource:ABC_transporter_substrate-binding_lipoprotein____smi_0738 }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21627162
P703
Q16521
USER
Where is that nucleic acid sequence found ?
action filter_type
action find
entity Q21627162
relation P703
type Q16521
SELECT DISTINCT ?e WHERE { resource:Q21627162 property:P703 ?e . ?e rdf:type ontology:Q16521 }
DNA excision repair protein subunit A    FTT_1312c
action filter_type
action find
entity DNA excision repair protein subunit A    FTT_1312c
relation found in taxon
type taxon
SELECT DISTINCT ?e WHERE { resource:DNA_excision_repair_protein_subunit_A____FTT_1312c property:found_in_taxon ?e . ?e rdf:type ontology:taxon }
[]
taxon
Q21065232
SYSTEM
Francisella tularensis subsp. tularensis SCHU S4
Q21065232
action filter_type
action find
entity Q21627162
relation P703
type Q16521
That nucleic acid sequence is found in [ANSWER]
SELECT DISTINCT ?e WHERE { resource:Q21627162 property:P703 ?e . ?e rdf:type ontology:Q16521 }
Francisella tularensis subsp. tularensis SCHU S4
That nucleic acid sequence is found in Francisella tularensis subsp. tularensis SCHU S4
Francisella tularensis subsp. tularensis SCHU S4
action filter_type
action find
entity DNA excision repair protein subunit A    FTT_1312c
relation found in taxon
type taxon
SELECT DISTINCT ?e WHERE { resource:DNA_excision_repair_protein_subunit_A____FTT_1312c property:found_in_taxon ?e . ?e rdf:type ontology:taxon }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q21065232 Q21627809
P703
Q863908
USER
Is hypothetical protein    FTT_1153c found in the taxon that one ?
(Q21627809,P703,Q21065232)
action is_in
entity Q21065232
action find
entity Q21627809
relation P703
['Q21627809', 'P703', 'Q21065232']
ASK WHERE { resource:Q21627809 property:P703 resource:Q21065232 }
Francisella tularensis subsp. tularensis SCHU S4 hypothetical protein    FTT_1153c
action is_in
entity Francisella tularensis subsp. tularensis SCHU S4
action find
entity hypothetical protein    FTT_1153c
relation found in taxon
['hypothetical protein    FTT_1153c', 'found in taxon', 'Francisella tularensis subsp. tularensis SCHU S4']
ASK WHERE { resource:hypothetical_protein____FTT_1153c property:found_in_taxon resource:Francisella_tularensis_subsp._tularensis_SCHU_S4 }
[]
nucleic acid sequence
SYSTEM
YES
(Q21627809,P703,Q21065232)
action is_in
entity Q21065232
action find
entity Q21627809
relation P703
[ANSWER]
['Q21627809', 'P703', 'Q21065232']
ASK WHERE { resource:Q21627809 property:P703 resource:Q21065232 }
Yes
action is_in
entity Francisella tularensis subsp. tularensis SCHU S4
action find
entity hypothetical protein    FTT_1153c
relation found in taxon
['hypothetical protein    FTT_1153c', 'found in taxon', 'Francisella tularensis subsp. tularensis SCHU S4']
ASK WHERE { resource:hypothetical_protein____FTT_1153c property:found_in_taxon resource:Francisella_tularensis_subsp._tularensis_SCHU_S4 }
[]
Quantitative Reasoning (All)
Quantitative|Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q79529 Q181394 Q181394
USER
Which nutrients can communicate with around 44 chemical substances and nutrients ?
(c(Q181394),P129,c(Q79529)|c(Q181394))
action approx
action union
action find_tuple_counts
relation P129
type Q181394
type Q79529
action find_tuple_counts
relation P129
type Q181394
type Q181394
value 44
[{'concept': 'Q181394'}, 'P129', [{'concept': 'Q79529'}, {'concept': 'Q181394'}]]
SELECT DISTINCT ?v WHERE { { SELECT DISTINCT ( COUNT ( ?j ) AS ?r ) ?v WHERE { { ?v rdf:type ontology:Q181394 . ?j rdf:type ontology:Q79529 . ?v property:P129 ?j } UNION { ?j rdf:type ontology:Q181394 . ?v rdf:type ontology:Q181394 . ?v property:P129 ?j } } GROUP BY ?v } . FILTER ( ?r = 44 ) }
action approx
action union
action find_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
action find_tuple_counts
relation physically interacts with
type nutrient
type nutrient
value 44
[{'concept': 'nutrient'}, 'physically interacts with', [{'concept': 'chemical substance'}, {'concept': 'nutrient'}]]
SELECT DISTINCT ?v WHERE { { SELECT DISTINCT ( COUNT ( ?j ) AS ?r ) ?v WHERE { { ?v rdf:type ontology:nutrient . ?j rdf:type ontology:chemical_substance . ?v property:physically_interacts_with ?j } UNION { ?j rdf:type ontology:nutrient . ?v rdf:type ontology:nutrient . ?v property:physically_interacts_with ?j } } GROUP BY ?v } . FILTER ( ?r = 44 ) }
[]
chemical substance nutrient nutrient
Q1949517 Q4639596 Q21108118
SYSTEM
5-hydroxytryptamine receptor 2A, 5-hydroxytryptamine receptor 2B, 5-hydroxytryptamine receptor 2C
Q4639596 Q21108118 Q21115043 Q1949517
(c(Q181394),P129,c(Q79529)|c(Q181394))
action approx
action union
action find_tuple_counts
relation P129
type Q181394
type Q79529
action find_tuple_counts
relation P129
type Q181394
type Q181394
value 44
[ANSWERS] can communicate with around 44 chemical substances and nutrients
[{'concept': 'Q181394'}, 'P129', [{'concept': 'Q79529'}, {'concept': 'Q181394'}]]
SELECT DISTINCT ?v WHERE { { SELECT DISTINCT ( COUNT ( ?j ) AS ?r ) ?v WHERE { { ?v rdf:type ontology:Q181394 . ?j rdf:type ontology:Q79529 . ?v property:P129 ?j } UNION { ?j rdf:type ontology:Q181394 . ?v rdf:type ontology:Q181394 . ?v property:P129 ?j } } GROUP BY ?v } . FILTER ( ?r = 44 ) }
5-hydroxytryptamine receptor 2B 5-hydroxytryptamine receptor 2C 5-hydroxytryptamine receptor 1A 5-hydroxytryptamine receptor 2A
5-hydroxytryptamine receptor 2A, 5-hydroxytryptamine receptor 2B and 5-hydroxytryptamine receptor 2C can communicate with around 44 chemical substances and nutrients
5-hydroxytryptamine receptor 2A 5-hydroxytryptamine receptor 2B 5-hydroxytryptamine receptor 2C
action approx
action union
action find_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
action find_tuple_counts
relation physically interacts with
type nutrient
type nutrient
value 44
[{'concept': 'nutrient'}, 'physically interacts with', [{'concept': 'chemical substance'}, {'concept': 'nutrient'}]]
SELECT DISTINCT ?v WHERE { { SELECT DISTINCT ( COUNT ( ?j ) AS ?r ) ?v WHERE { { ?v rdf:type ontology:nutrient . ?j rdf:type ontology:chemical_substance . ?v property:physically_interacts_with ?j } UNION { ?j rdf:type ontology:nutrient . ?v rdf:type ontology:nutrient . ?v property:physically_interacts_with ?j } } GROUP BY ?v } . FILTER ( ?r = 44 ) }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23121849 Q21627162
P688
Q181394
USER
Which nutrients do DNA excision repair protein subunit A    FTT_1312c or (Fe-S)-binding protein    AHA_0918 encode ?
OR((Q21627162,P688,c(Q181394)), (Q23121849,P688,c(Q181394)))
action filter_type
action union
action find
entity Q21627162
relation P688
action find
entity Q23121849
relation P688
type Q181394
{'OR': [['Q21627162', 'P688', {'concept': 'Q181394'}], ['Q23121849', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?w WHERE { { { resource:Q21627162 property:P688 ?w } UNION { resource:Q23121849 property:P688 ?w } } . ?w rdf:type ontology:Q181394 }
(Fe-S)-binding protein    AHA_0918 DNA excision repair protein subunit A    FTT_1312c
action filter_type
action union
action find
entity DNA excision repair protein subunit A    FTT_1312c
relation encodes
action find
entity (Fe-S)-binding protein    AHA_0918
relation encodes
type nutrient
{'OR': [['DNA excision repair protein subunit A    FTT_1312c', 'encodes', {'concept': 'nutrient'}], ['(Fe-S)-binding protein    AHA_0918', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?w WHERE { { { resource:DNA_excision_repair_protein_subunit_A____FTT_1312c property:encodes ?w } UNION { resource:(Fe-S)-binding_protein____AHA_0918 property:encodes ?w } } . ?w rdf:type ontology:nutrient }
[]
nutrient
Q21630504 Q23431675
SYSTEM
DNA excision repair protein subunit A    FTT_1312c, (Fe-S)-binding protein    AHA_0918
Q21630504 Q23431675
OR((Q21627162,P688,c(Q181394)), (Q23121849,P688,c(Q181394)))
action filter_type
action union
action find
entity Q21627162
relation P688
action find
entity Q23121849
relation P688
type Q181394
[ANSWERS]
{'OR': [['Q21627162', 'P688', {'concept': 'Q181394'}], ['Q23121849', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?w WHERE { { { resource:Q21627162 property:P688 ?w } UNION { resource:Q23121849 property:P688 ?w } } . ?w rdf:type ontology:Q181394 }
DNA excision repair protein subunit A    FTT_1312c (Fe-S)-binding protein    AHA_0918
DNA excision repair protein subunit A FTT 1312c and (Fe-S)-binding protein AHA 0918 DNA excision repair protein subunit A FTT_1312c or (Fe-S)-binding protein AHA_0918 encode
DNA excision repair protein subunit A    FTT_1312c (Fe-S)-binding protein    AHA_0918
action filter_type
action union
action find
entity DNA excision repair protein subunit A    FTT_1312c
relation encodes
action find
entity (Fe-S)-binding protein    AHA_0918
relation encodes
type nutrient
{'OR': [['DNA excision repair protein subunit A    FTT_1312c', 'encodes', {'concept': 'nutrient'}], ['(Fe-S)-binding protein    AHA_0918', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?w WHERE { { { resource:DNA_excision_repair_protein_subunit_A____FTT_1312c property:encodes ?w } UNION { resource:(Fe-S)-binding_protein____AHA_0918 property:encodes ?w } } . ?w rdf:type ontology:nutrient }
[]
Simple Question (Direct)
Simple Question|Mult. Entity|Indirect
Q21630504 Q23431675
P680
Q44424
USER
What represents the molecular function of DNA excision repair protein subunit A    FTT_1312c and (Fe-S)-binding protein    AHA_0918 ?
(Q21630504,P680,c(Q44424)) (Q23431675,P680,c(Q44424))
action union
action filter_type
action find
entity Q21630504
relation P680
type Q44424
action filter_type
action find
entity Q23431675
relation P680
type Q44424
['Q21630504', 'P680', {'concept': 'Q44424'}] ['Q23431675', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?m WHERE { { ?m rdf:type ontology:Q44424 . resource:Q21630504 property:P680 ?m } UNION { ?m rdf:type ontology:Q44424 . resource:Q23431675 property:P680 ?m } }
DNA excision repair protein subunit A    FTT_1312c (Fe-S)-binding protein    AHA_0918
action union
action filter_type
action find
entity DNA excision repair protein subunit A    FTT_1312c
relation molecular function
type chemical bond
action filter_type
action find
entity (Fe-S)-binding protein    AHA_0918
relation molecular function
type chemical bond
['DNA excision repair protein subunit A    FTT_1312c', 'molecular function', {'concept': 'chemical bond'}] ['(Fe-S)-binding protein    AHA_0918', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?m WHERE { { ?m rdf:type ontology:chemical_bond . resource:DNA_excision_repair_protein_subunit_A____FTT_1312c property:molecular_function ?m } UNION { ?m rdf:type ontology:chemical_bond . resource:(Fe-S)-binding_protein____AHA_0918 property:molecular_function ?m } }
[]
chemical bond
Q13667380 Q14633865 Q13667380
SYSTEM
zinc ion binding for 2nd, metal ion binding for 1st, 3rd
Q13667380 Q14633865 Q13667380
(Q21630504,P680,c(Q44424)) (Q23431675,P680,c(Q44424))
action union
action filter_type
action find
entity Q21630504
relation P680
type Q44424
action filter_type
action find
entity Q23431675
relation P680
type Q44424
[ANSWERS]
['Q21630504', 'P680', {'concept': 'Q44424'}] ['Q23431675', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?m WHERE { { ?m rdf:type ontology:Q44424 . resource:Q21630504 property:P680 ?m } UNION { ?m rdf:type ontology:Q44424 . resource:Q23431675 property:P680 ?m } }
metal ion binding zinc ion binding metal ion binding
Metal ion binding, zinc ion binding and metal ion binding represent the molecular function of DNA excision repair protein subunit A FTT_1312c and (Fe-S)-binding protein AHA_0918
metal ion binding zinc ion binding metal ion binding
action union
action filter_type
action find
entity DNA excision repair protein subunit A    FTT_1312c
relation molecular function
type chemical bond
action filter_type
action find
entity (Fe-S)-binding protein    AHA_0918
relation molecular function
type chemical bond
['DNA excision repair protein subunit A    FTT_1312c', 'molecular function', {'concept': 'chemical bond'}] ['(Fe-S)-binding protein    AHA_0918', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?m WHERE { { ?m rdf:type ontology:chemical_bond . resource:DNA_excision_repair_protein_subunit_A____FTT_1312c property:molecular_function ?m } UNION { ?m rdf:type ontology:chemical_bond . resource:(Fe-S)-binding_protein____AHA_0918 property:molecular_function ?m } }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q23530422
Q44424
USER
And what about MRP protein-like protein    CLC_0135?
(Q23530422,P680,c(Q44424))
action filter_type
action find
entity Q23530422
relation P680
type Q44424
['Q23530422', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?y WHERE { resource:Q23530422 property:P680 ?y . ?y rdf:type ontology:Q44424 }
MRP protein-like protein    CLC_0135
action filter_type
action find
entity MRP protein-like protein    CLC_0135
relation molecular function
type chemical bond
['MRP protein-like protein    CLC_0135', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?y WHERE { resource:MRP_protein-like_protein____CLC_0135 property:molecular_function ?y . ?y rdf:type ontology:chemical_bond }
[]
chemical bond
Q13667380
SYSTEM
metal ion binding
Q13667380
(Q23530422,P680,c(Q44424))
action filter_type
action find
entity Q23530422
relation P680
type Q44424
[ANSWER]
['Q23530422', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?y WHERE { resource:Q23530422 property:P680 ?y . ?y rdf:type ontology:Q44424 }
metal ion binding
metal ion binding
action filter_type
action find
entity MRP protein-like protein    CLC_0135
relation molecular function
type chemical bond
['MRP protein-like protein    CLC_0135', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?y WHERE { resource:MRP_protein-like_protein____CLC_0135 property:molecular_function ?y . ?y rdf:type ontology:chemical_bond }
[]