Simple Question (Direct)
Simple Question
Q21114264
P703
Q16521
USER
Where is Dedicator of cytokinesis protein 3 found ?
(Q21114264,P703,c(Q16521))
action filter_type
action find
entity Q21114264
relation P703
type Q16521
['Q21114264', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?o WHERE { resource:Q21114264 property:P703 ?o . ?o rdf:type ontology:Q16521 }
Dedicator of cytokinesis protein 3
action filter_type
action find
entity Dedicator of cytokinesis protein 3
relation found in taxon
type taxon
['Dedicator of cytokinesis protein 3', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?o WHERE { resource:Dedicator_of_cytokinesis_protein_3 property:found_in_taxon ?o . ?o rdf:type ontology:taxon }
[]
taxon
Q15978631
SYSTEM
Homo sapiens
Q15978631
(Q21114264,P703,c(Q16521))
action filter_type
action find
entity Q21114264
relation P703
type Q16521
Dedicator of cytokinesis protein 3 is found in [ANSWER]
['Q21114264', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?o WHERE { resource:Q21114264 property:P703 ?o . ?o rdf:type ontology:Q16521 }
Homo sapiens
Dedicator of cytokinesis protein 3 is found in Homo sapiens
Homo sapiens
action filter_type
action find
entity Dedicator of cytokinesis protein 3
relation found in taxon
type taxon
['Dedicator of cytokinesis protein 3', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?o WHERE { resource:Dedicator_of_cytokinesis_protein_3 property:found_in_taxon ?o . ?o rdf:type ontology:taxon }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21114264
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(c(Q863908),P688,Q15978631)
action filter_type
action find_reverse
entity Q21114264
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q15978631']
SELECT DISTINCT ?p WHERE { ?p property:P688 resource:Q21114264 . ?p rdf:type ontology:Q863908 }
Dedicator of cytokinesis protein 3
action filter_type
action find_reverse
entity Dedicator of cytokinesis protein 3
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Homo sapiens']
SELECT DISTINCT ?p WHERE { ?p property:encodes resource:Dedicator_of_cytokinesis_protein_3 . ?p rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q17914050
SYSTEM
DOCK3
Q17914050
(c(Q863908),P688,Q15978631)
action filter_type
action find_reverse
entity Q21114264
relation P688
type Q863908
[ANSWER] encodes that nutrient
[{'concept': 'Q863908'}, 'P688', 'Q15978631']
SELECT DISTINCT ?p WHERE { ?p property:P688 resource:Q21114264 . ?p rdf:type ontology:Q863908 }
DOCK3
DOCK3 encodes that nutrient
DOCK3
action filter_type
action find_reverse
entity Dedicator of cytokinesis protein 3
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Homo sapiens']
SELECT DISTINCT ?p WHERE { ?p property:encodes resource:Dedicator_of_cytokinesis_protein_3 . ?p rdf:type ontology:nucleic_acid_sequence }
[]
Logical Reasoning (All)
Logical|Intersection|Multiple_Relation
Q15978631 Q21114264
P703 P688
Q863908
USER
Which nucleic acid sequences encodes Dedicator of cytokinesis protein 3 and species belongs to the taxon Homo sapiens ?
AND((c(Q863908),P688,Q21114264), (c(Q863908),P703,Q15978631))
action filter_type
action intersection
action find_reverse
entity Q21114264
relation P688
action find_reverse
entity Q15978631
relation P703
type Q863908
{'AND': [[{'concept': 'Q863908'}, 'P688', 'Q21114264'], [{'concept': 'Q863908'}, 'P703', 'Q15978631']]}
SELECT DISTINCT ?m WHERE { ?m property:P688 resource:Q21114264 . ?m property:P703 resource:Q15978631 . ?m rdf:type ontology:Q863908 }
Homo sapiens Dedicator of cytokinesis protein 3
action filter_type
action intersection
action find_reverse
entity Dedicator of cytokinesis protein 3
relation encodes
action find_reverse
entity Homo sapiens
relation found in taxon
type nucleic acid sequence
{'AND': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'Dedicator of cytokinesis protein 3'], [{'concept': 'nucleic acid sequence'}, 'found in taxon', 'Homo sapiens']]}
SELECT DISTINCT ?m WHERE { ?m property:encodes resource:Dedicator_of_cytokinesis_protein_3 . ?m property:found_in_taxon resource:Homo_sapiens . ?m rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q17914050
SYSTEM
DOCK3
Q17914050
AND((c(Q863908),P688,Q21114264), (c(Q863908),P703,Q15978631))
action filter_type
action intersection
action find_reverse
entity Q21114264
relation P688
action find_reverse
entity Q15978631
relation P703
type Q863908
[ANSWER] encodes Dedicator of cytokinesis protein 3 and species belongs to the taxon Homo sapiens
{'AND': [[{'concept': 'Q863908'}, 'P688', 'Q21114264'], [{'concept': 'Q863908'}, 'P703', 'Q15978631']]}
SELECT DISTINCT ?m WHERE { ?m property:P688 resource:Q21114264 . ?m property:P703 resource:Q15978631 . ?m rdf:type ontology:Q863908 }
DOCK3
DOCK3 encodes Dedicator of cytokinesis protein 3 and species belongs to the taxon Homo sapiens
DOCK3
action filter_type
action intersection
action find_reverse
entity Dedicator of cytokinesis protein 3
relation encodes
action find_reverse
entity Homo sapiens
relation found in taxon
type nucleic acid sequence
{'AND': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'Dedicator of cytokinesis protein 3'], [{'concept': 'nucleic acid sequence'}, 'found in taxon', 'Homo sapiens']]}
SELECT DISTINCT ?m WHERE { ?m property:encodes resource:Dedicator_of_cytokinesis_protein_3 . ?m property:found_in_taxon resource:Homo_sapiens . ?m rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|3 entities, 2 direct, 2(direct) are query entities, subject is indirect
Q17914050 Q3080319 Q180614
P2293
Q2057971
USER
Is that nucleic acid sequence genetically associated with penicilliosis and melanoma ?
(Q17914050,P2293,Q3080319) (Q17914050,P2293,Q180614)
action is_in
entity Q17914050
action intersection
action find_reverse
entity Q3080319
relation P2293
action find_reverse
entity Q180614
relation P2293
['Q17914050', 'P2293', 'Q3080319'] ['Q17914050', 'P2293', 'Q180614']
ASK WHERE { resource:Q17914050 property:P2293 resource:Q3080319 . resource:Q17914050 property:P2293 resource:Q180614 }
DOCK3 penicilliosis melanoma
action is_in
entity DOCK3
action intersection
action find_reverse
entity penicilliosis
relation genetic association
action find_reverse
entity melanoma
relation genetic association
['DOCK3', 'genetic association', 'penicilliosis'] ['DOCK3', 'genetic association', 'melanoma']
ASK WHERE { resource:DOCK3 property:genetic_association resource:penicilliosis . resource:DOCK3 property:genetic_association resource:melanoma }
[]
health problem
SYSTEM
NO and YES respectively
(Q17914050,P2293,Q3080319) (Q17914050,P2293,Q180614)
action is_in
entity Q17914050
action intersection
action find_reverse
entity Q3080319
relation P2293
action find_reverse
entity Q180614
relation P2293
[ANSWER]
['Q17914050', 'P2293', 'Q3080319'] ['Q17914050', 'P2293', 'Q180614']
ASK WHERE { resource:Q17914050 property:P2293 resource:Q3080319 . resource:Q17914050 property:P2293 resource:Q180614 }
NO and YES respectively
action is_in
entity DOCK3
action intersection
action find_reverse
entity penicilliosis
relation genetic association
action find_reverse
entity melanoma
relation genetic association
['DOCK3', 'genetic association', 'penicilliosis'] ['DOCK3', 'genetic association', 'melanoma']
ASK WHERE { resource:DOCK3 property:genetic_association resource:penicilliosis . resource:DOCK3 property:genetic_association resource:melanoma }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q17914050
P684
Q863908
USER
Which nucleic acid sequence is an orthologous gene for that one ?
action filter_type
action find
entity Q17914050
relation P684
type Q863908
SELECT DISTINCT ?u WHERE { resource:Q17914050 property:P684 ?u . ?u rdf:type ontology:Q863908 }
DOCK3
action filter_type
action find
entity DOCK3
relation ortholog
type nucleic acid sequence
SELECT DISTINCT ?u WHERE { resource:DOCK3 property:ortholog ?u . ?u rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18296104
SYSTEM
Dock3
Q18296104
action filter_type
action find
entity Q17914050
relation P684
type Q863908
[ANSWER] is an orthologous gene for that one
SELECT DISTINCT ?u WHERE { resource:Q17914050 property:P684 ?u . ?u rdf:type ontology:Q863908 }
Dock3
Dock3 is an orthologous gene for that one
Dock3
action filter_type
action find
entity DOCK3
relation ortholog
type nucleic acid sequence
SELECT DISTINCT ?u WHERE { resource:DOCK3 property:ortholog ?u . ?u rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|3 entities, 2 direct, 2(direct) are query entities, subject is indirect
Q18296104 Q21688028 Q17914050
P684
Q863908
USER
Does that nucleic acid sequence have polynucleotide phosphorylase/polyadenylase    TTHA1139 and DOCK3 as its orthologous gene ?
(Q18296104,P684,Q21688028) (Q18296104,P684,Q17914050)
action is_in
entity Q18296104
action intersection
action find_reverse
entity Q21688028
relation P684
action find_reverse
entity Q17914050
relation P684
['Q18296104', 'P684', 'Q21688028'] ['Q18296104', 'P684', 'Q17914050']
ASK WHERE { resource:Q18296104 property:P684 resource:Q21688028 . resource:Q18296104 property:P684 resource:Q17914050 }
Dock3 polynucleotide phosphorylase/polyadenylase    TTHA1139 DOCK3
action is_in
entity Dock3
action intersection
action find_reverse
entity polynucleotide phosphorylase/polyadenylase    TTHA1139
relation ortholog
action find_reverse
entity DOCK3
relation ortholog
['Dock3', 'ortholog', 'polynucleotide phosphorylase/polyadenylase    TTHA1139'] ['Dock3', 'ortholog', 'DOCK3']
ASK WHERE { resource:Dock3 property:ortholog resource:polynucleotide_phosphorylase/polyadenylase____TTHA1139 . resource:Dock3 property:ortholog resource:DOCK3 }
[]
nucleic acid sequence
SYSTEM
NO and YES respectively
(Q18296104,P684,Q21688028) (Q18296104,P684,Q17914050)
action is_in
entity Q18296104
action intersection
action find_reverse
entity Q21688028
relation P684
action find_reverse
entity Q17914050
relation P684
[ANSWER]
['Q18296104', 'P684', 'Q21688028'] ['Q18296104', 'P684', 'Q17914050']
ASK WHERE { resource:Q18296104 property:P684 resource:Q21688028 . resource:Q18296104 property:P684 resource:Q17914050 }
NO and YES respectively
action is_in
entity Dock3
action intersection
action find_reverse
entity polynucleotide phosphorylase/polyadenylase    TTHA1139
relation ortholog
action find_reverse
entity DOCK3
relation ortholog
['Dock3', 'ortholog', 'polynucleotide phosphorylase/polyadenylase    TTHA1139'] ['Dock3', 'ortholog', 'DOCK3']
ASK WHERE { resource:Dock3 property:ortholog resource:polynucleotide_phosphorylase/polyadenylase____TTHA1139 . resource:Dock3 property:ortholog resource:DOCK3 }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q18049302 Q17914050
P2293
Q2057971
USER
Which health problems are genetically connected with DOCK3 or PARD3B ?
OR((c(Q2057971),P2293,Q17914050), (c(Q2057971),P2293,Q18049302))
action filter_type
action union
action find_reverse
entity Q17914050
relation P2293
action find_reverse
entity Q18049302
relation P2293
type Q2057971
{'OR': [[{'concept': 'Q2057971'}, 'P2293', 'Q17914050'], [{'concept': 'Q2057971'}, 'P2293', 'Q18049302']]}
SELECT DISTINCT ?q WHERE { { VALUES ( ?x ) { ( resource:Q17914050 ) ( resource:Q18049302 ) } . ?q property:P2293 ?x } . ?q rdf:type ontology:Q2057971 }
PARD3B DOCK3
action filter_type
action union
action find_reverse
entity DOCK3
relation genetic association
action find_reverse
entity PARD3B
relation genetic association
type health problem
{'OR': [[{'concept': 'health problem'}, 'genetic association', 'DOCK3'], [{'concept': 'health problem'}, 'genetic association', 'PARD3B']]}
SELECT DISTINCT ?q WHERE { { VALUES ( ?x ) { ( resource:DOCK3 ) ( resource:PARD3B ) } . ?q property:genetic_association ?x } . ?q rdf:type ontology:health_problem }
[]
health problem
Q180614 Q62736 Q12199 Q38404
SYSTEM
melanoma, osteoarthritis/osteodystrophy, acquired immunodeficiency syndrome, autism
Q180614 Q62736 Q12199 Q38404
OR((c(Q2057971),P2293,Q17914050), (c(Q2057971),P2293,Q18049302))
action filter_type
action union
action find_reverse
entity Q17914050
relation P2293
action find_reverse
entity Q18049302
relation P2293
type Q2057971
[ANSWERS] are genetically connected with DOCK3 or PARD3B
{'OR': [[{'concept': 'Q2057971'}, 'P2293', 'Q17914050'], [{'concept': 'Q2057971'}, 'P2293', 'Q18049302']]}
SELECT DISTINCT ?q WHERE { { VALUES ( ?x ) { ( resource:Q17914050 ) ( resource:Q18049302 ) } . ?q property:P2293 ?x } . ?q rdf:type ontology:Q2057971 }
melanoma osteoarthritis/osteodystrophy acquired immunodeficiency syndrome autism
Melanoma, osteoarthritis/osteodystrophy, acquired immunodeficiency syndrome and autism are genetically connected with DOCK3 or PARD3B
melanoma osteoarthritis/osteodystrophy acquired immunodeficiency syndrome autism
action filter_type
action union
action find_reverse
entity DOCK3
relation genetic association
action find_reverse
entity PARD3B
relation genetic association
type health problem
{'OR': [[{'concept': 'health problem'}, 'genetic association', 'DOCK3'], [{'concept': 'health problem'}, 'genetic association', 'PARD3B']]}
SELECT DISTINCT ?q WHERE { { VALUES ( ?x ) { ( resource:DOCK3 ) ( resource:PARD3B ) } . ?q property:genetic_association ?x } . ?q rdf:type ontology:health_problem }
[]
Simple Question (Coreferenced)
Simple Question|Mult. Entity
Q180614 Q62736 Q12199 Q38404
P2293
Q863908
USER
Which nucleic acid sequences are genetically linked with those health problems ?
(c(Q863908),P2293,Q180614) (c(Q863908),P2293,Q62736) (c(Q863908),P2293,Q12199) (c(Q863908),P2293,Q38404)
action filter_type
action find
entity prev_answer
relation P2293
type Q863908
[{'concept': 'Q863908'}, 'P2293', 'Q180614'] [{'concept': 'Q863908'}, 'P2293', 'Q62736'] [{'concept': 'Q863908'}, 'P2293', 'Q12199'] [{'concept': 'Q863908'}, 'P2293', 'Q38404']
SELECT DISTINCT ?g WHERE { ?y property:P2293 ?g . ?g rdf:type ontology:Q863908 . VALUES ( ?y ) { ( resource:Q180614 ) ( resource:Q62736 ) ( resource:Q12199 ) } }
melanoma osteoarthritis/osteodystrophy acquired immunodeficiency syndrome autism
action filter_type
action find
entity prev_answer
relation genetic association
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'genetic association', 'melanoma'] [{'concept': 'nucleic acid sequence'}, 'genetic association', 'osteoarthritis/osteodystrophy'] [{'concept': 'nucleic acid sequence'}, 'genetic association', 'acquired immunodeficiency syndrome'] [{'concept': 'nucleic acid sequence'}, 'genetic association', 'autism']
SELECT DISTINCT ?g WHERE { ?y property:genetic_association ?g . ?g rdf:type ontology:nucleic_acid_sequence . VALUES ( ?y ) { ( resource:melanoma ) ( resource:osteoarthritis/osteodystrophy ) ( resource:acquired_immunodeficiency_syndrome ) } }
[]
nucleic acid sequence
Q14912501 Q14912501 Q18050946
SYSTEM
MACROD2 for 3rd, FTO for 1st, 2nd
Q17914050 Q18032913 Q14872807 Q18041257 Q17710375 Q18032890 Q14912501 Q18040047 Q14865358 Q18029688 Q18055650 Q18036088 Q14912501 Q18049302 Q18055508 Q18047604 Q18035408 Q17855655 Q18037046 Q18053064 Q18031338 Q18049302 Q18034058 Q18033881 Q18049302 Q18033732 Q18030727 Q18050946
(c(Q863908),P2293,Q180614) (c(Q863908),P2293,Q62736) (c(Q863908),P2293,Q12199) (c(Q863908),P2293,Q38404)
action filter_type
action find
entity prev_answer
relation P2293
type Q863908
[ANSWERS]
[{'concept': 'Q863908'}, 'P2293', 'Q180614'] [{'concept': 'Q863908'}, 'P2293', 'Q62736'] [{'concept': 'Q863908'}, 'P2293', 'Q12199'] [{'concept': 'Q863908'}, 'P2293', 'Q38404']
SELECT DISTINCT ?g WHERE { ?y property:P2293 ?g . ?g rdf:type ontology:Q863908 . VALUES ( ?y ) { ( resource:Q180614 ) ( resource:Q62736 ) ( resource:Q12199 ) } }
DOCK3 ANXA9 ATM TET2 PARP1 PLA2G6 FTO SLC45A2 TYR MX2 EYS DUS4L FTO PARD3B NACA2 DOT1L COG5 CAMK2B MCF2L DNAH10 RXRG PARD3B TGFBRAP1 DGKI PARD3B TAF1C PPP2R5C MACROD2
FTO, FTO and MACROD2 are genetically linked with those health problems
FTO FTO MACROD2
action filter_type
action find
entity prev_answer
relation genetic association
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'genetic association', 'melanoma'] [{'concept': 'nucleic acid sequence'}, 'genetic association', 'osteoarthritis/osteodystrophy'] [{'concept': 'nucleic acid sequence'}, 'genetic association', 'acquired immunodeficiency syndrome'] [{'concept': 'nucleic acid sequence'}, 'genetic association', 'autism']
SELECT DISTINCT ?g WHERE { ?y property:genetic_association ?g . ?g rdf:type ontology:nucleic_acid_sequence . VALUES ( ?y ) { ( resource:melanoma ) ( resource:osteoarthritis/osteodystrophy ) ( resource:acquired_immunodeficiency_syndrome ) } }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q14901300
Q863908
USER
And what about Ntrk3?
(Q14901300,P684,c(Q863908))
action filter_type
action find
entity Q14901300
relation P684
type Q863908
['Q14901300', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?a WHERE { resource:Q14901300 property:P684 ?a . ?a rdf:type ontology:Q863908 }
Ntrk3
action filter_type
action find
entity Ntrk3
relation ortholog
type nucleic acid sequence
['Ntrk3', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?a WHERE { resource:Ntrk3 property:ortholog ?a . ?a rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q24397346
SYSTEM
Ntrk3
Q24397346
(Q14901300,P684,c(Q863908))
action filter_type
action find
entity Q14901300
relation P684
type Q863908
[ANSWER]
['Q14901300', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?a WHERE { resource:Q14901300 property:P684 ?a . ?a rdf:type ontology:Q863908 }
Ntrk3
Ntrk3
action filter_type
action find
entity Ntrk3
relation ortholog
type nucleic acid sequence
['Ntrk3', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?a WHERE { resource:Ntrk3 property:ortholog ?a . ?a rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, subject is indirect
Q24397346 Q24600176
P684
Q863908
USER
Is RDH11 an orthologous gene for that one ?
(Q24397346,P684,Q24600176)
action is_in
entity Q24600176
action find
entity Q24397346
relation P684
['Q24397346', 'P684', 'Q24600176']
ASK WHERE { resource:Q24397346 property:P684 resource:Q24600176 }
Ntrk3 RDH11
action is_in
entity RDH11
action find
entity Ntrk3
relation ortholog
['Ntrk3', 'ortholog', 'RDH11']
ASK WHERE { resource:Ntrk3 property:ortholog resource:RDH11 }
[]
nucleic acid sequence
SYSTEM
NO
(Q24397346,P684,Q24600176)
action is_in
entity Q24600176
action find
entity Q24397346
relation P684
[ANSWER]
['Q24397346', 'P684', 'Q24600176']
ASK WHERE { resource:Q24397346 property:P684 resource:Q24600176 }
No
action is_in
entity RDH11
action find
entity Ntrk3
relation ortholog
['Ntrk3', 'ortholog', 'RDH11']
ASK WHERE { resource:Ntrk3 property:ortholog resource:RDH11 }
[]