Simple Question (Direct)
Simple Question
Q27553169
P681
Q5058355
USER
Which is the cell component of Sag1p YJR004C ?
(Q27553169,P681,c(Q5058355))
action filter_type
action find
entity Q27553169
relation P681
type Q5058355
['Q27553169', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?f WHERE { resource:Q27553169 property:P681 ?f . ?f rdf:type ontology:Q5058355 }
Sag1p YJR004C
action filter_type
action find
entity Sag1p YJR004C
relation cell component
type cellular component
['Sag1p YJR004C', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?f WHERE { resource:Sag1p_YJR004C property:cell_component ?f . ?f rdf:type ontology:cellular_component }
[]
cellular component
Q14864171
SYSTEM
cell periphery
Q14864171
(Q27553169,P681,c(Q5058355))
action filter_type
action find
entity Q27553169
relation P681
type Q5058355
The cell component of Sag1p YJR004C is a [ANSWER]
['Q27553169', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?f WHERE { resource:Q27553169 property:P681 ?f . ?f rdf:type ontology:Q5058355 }
cell periphery
The cell component of Sag1p YJR004C is a cell periphery
cell periphery
action filter_type
action find
entity Sag1p YJR004C
relation cell component
type cellular component
['Sag1p YJR004C', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?f WHERE { resource:Sag1p_YJR004C property:cell_component ?f . ?f rdf:type ontology:cellular_component }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q27553169
P688
Q863908
USER
Which nucleic acid sequence encodes Sag1p YJR004C ?
(c(Q863908),P688,Q27553169)
action filter_type
action find_reverse
entity Q27553169
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q27553169']
SELECT DISTINCT ?f WHERE { ?f property:P688 resource:Q27553169 . ?f rdf:type ontology:Q863908 }
Sag1p YJR004C
action filter_type
action find_reverse
entity Sag1p YJR004C
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Sag1p YJR004C']
SELECT DISTINCT ?f WHERE { ?f property:encodes resource:Sag1p_YJR004C . ?f rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q27546086
SYSTEM
Sag1p YJR004C
Q27546086
(c(Q863908),P688,Q27553169)
action filter_type
action find_reverse
entity Q27553169
relation P688
type Q863908
[ANSWER] encodes [ANSWER]
[{'concept': 'Q863908'}, 'P688', 'Q27553169']
SELECT DISTINCT ?f WHERE { ?f property:P688 resource:Q27553169 . ?f rdf:type ontology:Q863908 }
Sag1p YJR004C
Sag1p YJR004C encodes Sag1p YJR004C
Sag1p YJR004C
action filter_type
action find_reverse
entity Sag1p YJR004C
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Sag1p YJR004C']
SELECT DISTINCT ?f WHERE { ?f property:encodes resource:Sag1p_YJR004C . ?f rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q27546086
P702
Q181394
USER
Which nutrient is encoded by that nucleic acid sequence ?
(c(Q181394),P702,Q27546086)
action filter_type
action find_reverse
entity Q27546086
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q27546086']
SELECT DISTINCT ?b WHERE { ?b property:P702 resource:Q27546086 . ?b rdf:type ontology:Q181394 }
Sag1p YJR004C
action filter_type
action find_reverse
entity Sag1p YJR004C
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'Sag1p YJR004C']
SELECT DISTINCT ?b WHERE { ?b property:encoded_by resource:Sag1p_YJR004C . ?b rdf:type ontology:nutrient }
[]
nutrient
Q27553169
SYSTEM
Sag1p YJR004C
Q27553169
(c(Q181394),P702,Q27546086)
action filter_type
action find_reverse
entity Q27546086
relation P702
type Q181394
Gene [ANSWER] is encoded by that nucleic acid sequence
[{'concept': 'Q181394'}, 'P702', 'Q27546086']
SELECT DISTINCT ?b WHERE { ?b property:P702 resource:Q27546086 . ?b rdf:type ontology:Q181394 }
Sag1p YJR004C
Gene Sag1p YJR004C is encoded by that nucleic acid sequence
Sag1p YJR004C
action filter_type
action find_reverse
entity Sag1p YJR004C
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'Sag1p YJR004C']
SELECT DISTINCT ?b WHERE { ?b property:encoded_by resource:Sag1p_YJR004C . ?b rdf:type ontology:nutrient }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q27546086
P703
Q631147
USER
Which taxon is Sag1p YJR004C a part of ?
(Q27546086,P703,c(Q631147))
action filter_type
action find
entity Q27546086
relation P703
type Q631147
['Q27546086', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?g WHERE { resource:Q27546086 property:P703 ?g . ?g rdf:type ontology:Q631147 }
Sag1p YJR004C
action filter_type
action find
entity Sag1p YJR004C
relation found in taxon
type infraspecific name
['Sag1p YJR004C', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?g WHERE { resource:Sag1p_YJR004C property:found_in_taxon ?g . ?g rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q27510868
SYSTEM
Saccharomyces cerevisiae S288c
Q27510868
(Q27546086,P703,c(Q631147))
action filter_type
action find
entity Q27546086
relation P703
type Q631147
E [ANSWER] is Sag1p YJR004C a part of
['Q27546086', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?g WHERE { resource:Q27546086 property:P703 ?g . ?g rdf:type ontology:Q631147 }
Saccharomyces cerevisiae S288c
E Saccharomyces cerevisiae S288c is Sag1p YJR004C a part of
Saccharomyces cerevisiae S288c
action filter_type
action find
entity Sag1p YJR004C
relation found in taxon
type infraspecific name
['Sag1p YJR004C', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?g WHERE { resource:Sag1p_YJR004C property:found_in_taxon ?g . ?g rdf:type ontology:infraspecific_name }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Single entity type
P682
Q1057 Q181394
USER
How many metabolic processes are a biological processes that atmost 8645 nutrients are involved in ?
(c(Q181394),P682,c(Q1057))
action count
action atmost
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
value 8645
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ( COUNT ( ?f ) AS ?n ) WHERE { { SELECT DISTINCT ?f ( COUNT ( ?h ) AS ?k ) WHERE { ?h property:P682 ?f . ?h rdf:type ontology:Q181394 . ?f rdf:type ontology:Q1057 } GROUP BY ?f } . FILTER ( ?k <= 8645 ) }
action count
action atmost
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
value 8645
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ( COUNT ( ?f ) AS ?n ) WHERE { { SELECT DISTINCT ?f ( COUNT ( ?h ) AS ?k ) WHERE { ?h property:biological_process ?f . ?h rdf:type ontology:nutrient . ?f rdf:type ontology:metabolic_process } GROUP BY ?f } . FILTER ( ?k <= 8645 ) }
[]
metabolic process nutrient
SYSTEM
78
Q14864889 Q14907628 Q14913194 Q22274727 Q22251129 Q14905693 Q14860777 Q21134382 Q21097138 Q14819379 Q21759902 Q21133617 Q133895 Q21157940 Q21116483 Q14863351 Q21102358 Q21114210 Q14907178 Q21121151 Q14880758 Q21761098 Q14762260 Q22275051 Q21100626 Q14913439 Q14916189 Q14349667 Q21159531 Q21111970 Q898365 Q22274640 Q22279483 Q21119973 Q14865941 Q22282595 Q14907180 Q14907181 Q14905125 Q21096256 Q14863432 Q14902250 Q21124879 Q14909347 Q15313450 Q179924 Q21101220 Q21095286 Q14863986 Q14358591 Q838181 Q21116485 Q14859896 Q21103172 Q22276072 Q14914233 Q14897831 Q14645736 Q14864262 Q14859628 Q14819787 Q21119193 Q22274791 Q14819781 Q22279537 Q22283508 Q14327719 Q22279533 Q21124620 Q14860507 Q21112195 Q14890104 Q14864417 Q14864414 Q21759328 Q900386 Q14912265 Q21760838
(c(Q181394),P682,c(Q1057))
action count
action atmost
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
value 8645
[ANSWER]
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ( COUNT ( ?f ) AS ?n ) WHERE { { SELECT DISTINCT ?f ( COUNT ( ?h ) AS ?k ) WHERE { ?h property:P682 ?f . ?h rdf:type ontology:Q181394 . ?f rdf:type ontology:Q1057 } GROUP BY ?f } . FILTER ( ?k <= 8645 ) }
cellular aromatic compound metabolic process multicellular organism metabolic process cellular ketone body metabolic process secondary metabolic process proteolysis in other organism translational initiation hormone biosynthetic process cofactor metabolic process cellular aldehyde metabolic process one-carbon metabolic process carbon fixation actin modification tricarboxylic acid cycle nitrobenzene metabolic process lymphotoxin A biosynthetic process signal transduction by protein phosphorylation sulfur compound metabolic process regulation of translational initiation by eIF2 alpha dephosphorylation interleukin-2 biosynthetic process reactive nitrogen species metabolic process nucleobase-containing compound metabolic process photosynthesis carbohydrate metabolic process halogenated hydrocarbon metabolic process peptidyl-lysine modification to peptidyl-hypusine organophosphate metabolic process organic acid metabolic process lipid metabolic process selenium compound metabolic process reactive oxygen species biosynthetic process glycosylation cellular biosynthetic process cellular macromolecule metabolic process oxygen metabolic process connective tissue growth factor biosynthetic process ketone body metabolic process interleukin-13 biosynthetic process granulocyte macrophage colony-stimulating factor biosynthetic process neurotransmitter metabolic process cellular carbohydrate metabolic process reactive oxygen species metabolic process telomere maintenance via semi-conservative replication interleukin-8 biosynthetic process flavonoid metabolic process methylation-dependent chromatin silencing bioluminescence wax biosynthetic process amyloid fibril formation hormone catabolic process xenobiotic metabolic process respiratory burst interleukin-6 biosynthetic process cellular amino acid metabolic process DNA protection glycosyl compound metabolic process phosphatidic acid metabolic process isotype switching thyroid hormone metabolic process protein metabolic process cellular lipid metabolic process peptide hormone processing cellular modified amino acid metabolic process organic cyclic compound metabolic process generation of precursor metabolites and energy viral RNA genome replication IRES-dependent viral translational initiation small molecule metabolic process transposon integration transposition, DNA-mediated receptor internalization patched ligand maturation toxin metabolic process heterocycle metabolic process drug metabolic process cellular catabolic process demethylation cellular ketone metabolic process phosphorus metabolic process
78
action count
action atmost
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
value 8645
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ( COUNT ( ?f ) AS ?n ) WHERE { { SELECT DISTINCT ?f ( COUNT ( ?h ) AS ?k ) WHERE { ?h property:biological_process ?f . ?h rdf:type ontology:nutrient . ?f rdf:type ontology:metabolic_process } GROUP BY ?f } . FILTER ( ?k <= 8645 ) }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q27551158 Q27553169
P702
Q863908
USER
Which nucleic acid sequences are the gene that encodes Sag1p YJR004C or pyruvate kinase PYK2 YOR347C ?
OR((Q27553169,P702,c(Q863908)), (Q27551158,P702,c(Q863908)))
action filter_type
action union
action find
entity Q27553169
relation P702
action find
entity Q27551158
relation P702
type Q863908
{'OR': [['Q27553169', 'P702', {'concept': 'Q863908'}], ['Q27551158', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?i WHERE { { ?r property:P702 ?i . VALUES ( ?r ) { ( resource:Q27553169 ) ( resource:Q27551158 ) } } . ?i rdf:type ontology:Q863908 }
pyruvate kinase PYK2 YOR347C Sag1p YJR004C
action filter_type
action union
action find
entity Sag1p YJR004C
relation encoded by
action find
entity pyruvate kinase PYK2 YOR347C
relation encoded by
type nucleic acid sequence
{'OR': [['Sag1p YJR004C', 'encoded by', {'concept': 'nucleic acid sequence'}], ['pyruvate kinase PYK2 YOR347C', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?i WHERE { { ?r property:encoded_by ?i . VALUES ( ?r ) { ( resource:Sag1p_YJR004C ) ( resource:pyruvate_kinase_PYK2_YOR347C ) } } . ?i rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q27544095 Q27546086
SYSTEM
pyruvate kinase PYK2 YOR347C, Sag1p YJR004C
Q27544095 Q27546086
OR((Q27553169,P702,c(Q863908)), (Q27551158,P702,c(Q863908)))
action filter_type
action union
action find
entity Q27553169
relation P702
action find
entity Q27551158
relation P702
type Q863908
[ANSWERS] are the gene that encodes Sag1p YJR004C or pyruvate kinase PYK2 YOR347C
{'OR': [['Q27553169', 'P702', {'concept': 'Q863908'}], ['Q27551158', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?i WHERE { { ?r property:P702 ?i . VALUES ( ?r ) { ( resource:Q27553169 ) ( resource:Q27551158 ) } } . ?i rdf:type ontology:Q863908 }
pyruvate kinase PYK2 YOR347C Sag1p YJR004C
Pyruvate kinase PYK2 YOR347C and Sag1p YJR004C are the gene that encodes Sag1p YJR004C or pyruvate kinase PYK2 YOR347C
pyruvate kinase PYK2 YOR347C Sag1p YJR004C
action filter_type
action union
action find
entity Sag1p YJR004C
relation encoded by
action find
entity pyruvate kinase PYK2 YOR347C
relation encoded by
type nucleic acid sequence
{'OR': [['Sag1p YJR004C', 'encoded by', {'concept': 'nucleic acid sequence'}], ['pyruvate kinase PYK2 YOR347C', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?i WHERE { { ?r property:encoded_by ?i . VALUES ( ?r ) { ( resource:Sag1p_YJR004C ) ( resource:pyruvate_kinase_PYK2_YOR347C ) } } . ?i rdf:type ontology:nucleic_acid_sequence }
[]