Simple Question (Direct)
Simple Question
Q27549165
P681
Q15989253
USER
Which are the parts that are a component of uroporphyrinogen decarboxylase HEM12 YDR047W ?
(Q27549165,P681,c(Q15989253))
action filter_type
action find
entity Q27549165
relation P681
type Q15989253
['Q27549165', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?t WHERE { resource:Q27549165 property:P681 ?t . ?t rdf:type ontology:Q15989253 }
uroporphyrinogen decarboxylase HEM12 YDR047W
action filter_type
action find
entity uroporphyrinogen decarboxylase HEM12 YDR047W
relation cell component
type part
['uroporphyrinogen decarboxylase HEM12 YDR047W', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?t WHERE { resource:uroporphyrinogen_decarboxylase_HEM12_YDR047W property:cell_component ?t . ?t rdf:type ontology:part }
[]
part
Q79899 Q40260
SYSTEM
cytoplasm, nucleus
Q79899 Q40260
(Q27549165,P681,c(Q15989253))
action filter_type
action find
entity Q27549165
relation P681
type Q15989253
The parts that are a component of uroporphyrinogen decarboxylase HEM12 YDR047 W are the [ANSWERS]
['Q27549165', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?t WHERE { resource:Q27549165 property:P681 ?t . ?t rdf:type ontology:Q15989253 }
cytoplasm nucleus
The parts that are a component of uroporphyrinogen decarboxylase HEM12 YDR047 W are the cytoplasm and nucleus
cytoplasm nucleus
action filter_type
action find
entity uroporphyrinogen decarboxylase HEM12 YDR047W
relation cell component
type part
['uroporphyrinogen decarboxylase HEM12 YDR047W', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?t WHERE { resource:uroporphyrinogen_decarboxylase_HEM12_YDR047W property:cell_component ?t . ?t rdf:type ontology:part }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q27549165
P688
Q863908
USER
What is the nucleic acid sequence that is encoded by uroporphyrinogen decarboxylase HEM12 YDR047W ?
(c(Q863908),P688,Q27549165)
action filter_type
action find_reverse
entity Q27549165
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q27549165']
SELECT DISTINCT ?i WHERE { ?i rdf:type ontology:Q863908 . ?i property:P688 resource:Q27549165 }
uroporphyrinogen decarboxylase HEM12 YDR047W
action filter_type
action find_reverse
entity uroporphyrinogen decarboxylase HEM12 YDR047W
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'uroporphyrinogen decarboxylase HEM12 YDR047W']
SELECT DISTINCT ?i WHERE { ?i rdf:type ontology:nucleic_acid_sequence . ?i property:encodes resource:uroporphyrinogen_decarboxylase_HEM12_YDR047W }
[]
nucleic acid sequence
Q27542049
SYSTEM
uroporphyrinogen decarboxylase HEM12 YDR047W
Q27542049
(c(Q863908),P688,Q27549165)
action filter_type
action find_reverse
entity Q27549165
relation P688
type Q863908
The nucleic acid sequence that is encoded by uroporphyrinogen decarboxylase HEM12 YDR047 W is by [ANSWER]
[{'concept': 'Q863908'}, 'P688', 'Q27549165']
SELECT DISTINCT ?i WHERE { ?i rdf:type ontology:Q863908 . ?i property:P688 resource:Q27549165 }
uroporphyrinogen decarboxylase HEM12 YDR047W
The nucleic acid sequence that is encoded by uroporphyrinogen decarboxylase HEM12 YDR047 W is by uroporphyrinogen decarboxylase HEM12 YDR047W
uroporphyrinogen decarboxylase HEM12 YDR047W
action filter_type
action find_reverse
entity uroporphyrinogen decarboxylase HEM12 YDR047W
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'uroporphyrinogen decarboxylase HEM12 YDR047W']
SELECT DISTINCT ?i WHERE { ?i rdf:type ontology:nucleic_acid_sequence . ?i property:encodes resource:uroporphyrinogen_decarboxylase_HEM12_YDR047W }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q27542049
P703
Q631147
USER
Where is that nucleic acid sequence found ?
(Q27542049,P703,c(Q631147))
action filter_type
action find
entity Q27542049
relation P703
type Q631147
['Q27542049', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?u WHERE { resource:Q27542049 property:P703 ?u . ?u rdf:type ontology:Q631147 }
uroporphyrinogen decarboxylase HEM12 YDR047W
action filter_type
action find
entity uroporphyrinogen decarboxylase HEM12 YDR047W
relation found in taxon
type infraspecific name
['uroporphyrinogen decarboxylase HEM12 YDR047W', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?u WHERE { resource:uroporphyrinogen_decarboxylase_HEM12_YDR047W property:found_in_taxon ?u . ?u rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q27510868
SYSTEM
Saccharomyces cerevisiae S288c
Q27510868
(Q27542049,P703,c(Q631147))
action filter_type
action find
entity Q27542049
relation P703
type Q631147
That nucleic acid sequence is found in [ANSWER]
['Q27542049', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?u WHERE { resource:Q27542049 property:P703 ?u . ?u rdf:type ontology:Q631147 }
Saccharomyces cerevisiae S288c
That nucleic acid sequence is found in Saccharomyces cerevisiae S288c
Saccharomyces cerevisiae S288c
action filter_type
action find
entity uroporphyrinogen decarboxylase HEM12 YDR047W
relation found in taxon
type infraspecific name
['uroporphyrinogen decarboxylase HEM12 YDR047W', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?u WHERE { resource:uroporphyrinogen_decarboxylase_HEM12_YDR047W property:found_in_taxon ?u . ?u rdf:type ontology:infraspecific_name }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q27542049
P702
Q181394
USER
Which nutrient does uroporphyrinogen decarboxylase HEM12 YDR047W encode ?
(c(Q181394),P702,Q27542049)
action filter_type
action find_reverse
entity Q27542049
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q27542049']
SELECT DISTINCT ?u WHERE { ?u property:P702 resource:Q27542049 . ?u rdf:type ontology:Q181394 }
uroporphyrinogen decarboxylase HEM12 YDR047W
action filter_type
action find_reverse
entity uroporphyrinogen decarboxylase HEM12 YDR047W
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'uroporphyrinogen decarboxylase HEM12 YDR047W']
SELECT DISTINCT ?u WHERE { ?u property:encoded_by resource:uroporphyrinogen_decarboxylase_HEM12_YDR047W . ?u rdf:type ontology:nutrient }
[]
nutrient
Q27549165
SYSTEM
uroporphyrinogen decarboxylase HEM12 YDR047W
Q27549165
(c(Q181394),P702,Q27542049)
action filter_type
action find_reverse
entity Q27542049
relation P702
type Q181394
Uroporphyrinogen decarboxylases [ANSWER]
[{'concept': 'Q181394'}, 'P702', 'Q27542049']
SELECT DISTINCT ?u WHERE { ?u property:P702 resource:Q27542049 . ?u rdf:type ontology:Q181394 }
uroporphyrinogen decarboxylase HEM12 YDR047W
Uroporphyrinogen decarboxylases uroporphyrinogen decarboxylase HEM12 YDR047W
uroporphyrinogen decarboxylase HEM12 YDR047W
action filter_type
action find_reverse
entity uroporphyrinogen decarboxylase HEM12 YDR047W
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'uroporphyrinogen decarboxylase HEM12 YDR047W']
SELECT DISTINCT ?u WHERE { ?u property:encoded_by resource:uroporphyrinogen_decarboxylase_HEM12_YDR047W . ?u rdf:type ontology:nutrient }
[]
Quantitative Reasoning (All)
Quantitative|Atleast/ Atmost/ Approx. the same/Equal|Single entity type
P682
Q1057 Q181394
USER
Which metabolic processes are a biological processes that atmost 18 nutrients are involved in ?
(c(Q181394),P682,c(Q1057))
action atmost
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
value 18
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?z WHERE { { SELECT DISTINCT ?z ( COUNT ( ?x ) AS ?h ) WHERE { ?x rdf:type ontology:Q181394 . ?z rdf:type ontology:Q1057 . ?x property:P682 ?z } GROUP BY ?z } . FILTER ( ?h <= 18 ) }
action atmost
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
value 18
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?z WHERE { { SELECT DISTINCT ?z ( COUNT ( ?x ) AS ?h ) WHERE { ?x rdf:type ontology:nutrient . ?z rdf:type ontology:metabolic_process . ?x property:biological_process ?z } GROUP BY ?z } . FILTER ( ?h <= 18 ) }
[]
metabolic process nutrient
Q22251129 Q21116483 Q14907178
SYSTEM
proteolysis in other organism, lymphotoxin A biosynthetic process, interleukin-2 biosynthetic process
Q14907628 Q14913194 Q22274727 Q22251129 Q21134382 Q21133617 Q21157940 Q21116483 Q21114210 Q14907178 Q21121151 Q22275051 Q21100626 Q14913439 Q21159531 Q21111970 Q898365 Q22279483 Q21119973 Q14865941 Q22282595 Q14907180 Q14907181 Q14905125 Q14902250 Q21124879 Q14909347 Q21101220 Q21095286 Q14863986 Q838181 Q21116485 Q21103172 Q14914233 Q14645736 Q21119193 Q22274791 Q22279537 Q22283508 Q14327719 Q22279533 Q21112195 Q14864417 Q21759328 Q900386 Q14912265
(c(Q181394),P682,c(Q1057))
action atmost
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
value 18
[ANSWERS] are a biological processes that atmost 18 nutrients are involved in
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?z WHERE { { SELECT DISTINCT ?z ( COUNT ( ?x ) AS ?h ) WHERE { ?x rdf:type ontology:Q181394 . ?z rdf:type ontology:Q1057 . ?x property:P682 ?z } GROUP BY ?z } . FILTER ( ?h <= 18 ) }
multicellular organism metabolic process cellular ketone body metabolic process secondary metabolic process proteolysis in other organism cofactor metabolic process actin modification nitrobenzene metabolic process lymphotoxin A biosynthetic process regulation of translational initiation by eIF2 alpha dephosphorylation interleukin-2 biosynthetic process reactive nitrogen species metabolic process halogenated hydrocarbon metabolic process peptidyl-lysine modification to peptidyl-hypusine organophosphate metabolic process selenium compound metabolic process reactive oxygen species biosynthetic process glycosylation cellular macromolecule metabolic process oxygen metabolic process connective tissue growth factor biosynthetic process ketone body metabolic process interleukin-13 biosynthetic process granulocyte macrophage colony-stimulating factor biosynthetic process neurotransmitter metabolic process telomere maintenance via semi-conservative replication interleukin-8 biosynthetic process flavonoid metabolic process wax biosynthetic process amyloid fibril formation hormone catabolic process respiratory burst interleukin-6 biosynthetic process DNA protection phosphatidic acid metabolic process thyroid hormone metabolic process cellular modified amino acid metabolic process organic cyclic compound metabolic process viral RNA genome replication IRES-dependent viral translational initiation small molecule metabolic process transposon integration patched ligand maturation heterocycle metabolic process cellular catabolic process demethylation cellular ketone metabolic process
Proteolysis in other organism, lymphotoxin A biosynthetic process and interleukin-2 biosynthetic process are a biological processes that atmost 18 nutrients are involved in
proteolysis in other organism lymphotoxin A biosynthetic process interleukin-2 biosynthetic process
action atmost
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
value 18
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?z WHERE { { SELECT DISTINCT ?z ( COUNT ( ?x ) AS ?h ) WHERE { ?x rdf:type ontology:nutrient . ?z rdf:type ontology:metabolic_process . ?x property:biological_process ?z } GROUP BY ?z } . FILTER ( ?h <= 18 ) }
[]
Simple Question (Direct)
Simple Question|Mult. Entity|Indirect
Q22251129 Q21116483 Q14907178
P682
Q181394
USER
Which nutrients are involved in the biologicail process proteolysis in other organism, lymphotoxin A biosynthetic process and interleukin-2 biosynthetic process ?
(c(Q181394),P682,Q22251129) (c(Q181394),P682,Q21116483) (c(Q181394),P682,Q14907178)
action union
action filter_type
action find_reverse
entity Q22251129
relation P682
type Q181394
action filter_type
action find_reverse
entity Q21116483
relation P682
type Q181394
action filter_type
action find_reverse
entity Q14907178
relation P682
type Q181394
[{'concept': 'Q181394'}, 'P682', 'Q22251129'] [{'concept': 'Q181394'}, 'P682', 'Q21116483'] [{'concept': 'Q181394'}, 'P682', 'Q14907178']
SELECT DISTINCT ?x WHERE { { ?x property:P682 resource:Q22251129 . ?x rdf:type ontology:Q181394 } UNION { ?x property:P682 resource:Q21116483 . ?x rdf:type ontology:Q181394 } }
proteolysis in other organism lymphotoxin A biosynthetic process interleukin-2 biosynthetic process
action union
action filter_type
action find_reverse
entity proteolysis in other organism
relation biological process
type nutrient
action filter_type
action find_reverse
entity lymphotoxin A biosynthetic process
relation biological process
type nutrient
action filter_type
action find_reverse
entity interleukin-2 biosynthetic process
relation biological process
type nutrient
[{'concept': 'nutrient'}, 'biological process', 'proteolysis in other organism'] [{'concept': 'nutrient'}, 'biological process', 'lymphotoxin A biosynthetic process'] [{'concept': 'nutrient'}, 'biological process', 'interleukin-2 biosynthetic process']
SELECT DISTINCT ?x WHERE { { ?x property:biological_process resource:proteolysis_in_other_organism . ?x rdf:type ontology:nutrient } UNION { ?x property:biological_process resource:lymphotoxin_A_biosynthetic_process . ?x rdf:type ontology:nutrient } }
[]
nutrient
Q21100360 Q21116488 Q21116665
SYSTEM
Dual specificity mitogen-activated protein kinase kinase 1, B-cell lymphoma/leukemia 10, Dual specificity mitogen-activated protein kinase kinase 2
Q21172396 Q21104645 Q21100360 Q21116665 Q21109744 Q21107535 Q21495878 Q21116488 Q21120649 Q21495875 Q2657109 Q21110969 Q21173882 Q21495150
(c(Q181394),P682,Q22251129) (c(Q181394),P682,Q21116483) (c(Q181394),P682,Q14907178)
action union
action filter_type
action find_reverse
entity Q22251129
relation P682
type Q181394
action filter_type
action find_reverse
entity Q21116483
relation P682
type Q181394
action filter_type
action find_reverse
entity Q14907178
relation P682
type Q181394
[ANSWERS]
[{'concept': 'Q181394'}, 'P682', 'Q22251129'] [{'concept': 'Q181394'}, 'P682', 'Q21116483'] [{'concept': 'Q181394'}, 'P682', 'Q14907178']
SELECT DISTINCT ?x WHERE { { ?x property:P682 resource:Q22251129 . ?x rdf:type ontology:Q181394 } UNION { ?x property:P682 resource:Q21116483 . ?x rdf:type ontology:Q181394 } }
Dual specificity mitogen-activated protein kinase kinase 3 Dual specificity mitogen-activated protein kinase kinase 4 Dual specificity mitogen-activated protein kinase kinase 1 Dual specificity mitogen-activated protein kinase kinase 2 Dual specificity mitogen-activated protein kinase kinase 7 Dual specificity mitogen-activated protein kinase kinase 6 Interleukin-17F B-cell lymphoma/leukemia 10 Interleukin-17F Interleukin-1 receptor accessory protein Interleukin-18 PRKC apoptosis WT1 regulator protein Interleukin-1 receptor accessory protein PRKC apoptosis WT1 regulator protein
Dual specificity mitogen-activated protein 1, B-cell lymphoma/leukemia 10 and Dual specificity mitogen-activated protein kinase kinase 2 are involved in the biologicail process proteolysis in other organism, lymphotoxin A biosynthetic process and interleukin-2 biosynthetic process
Dual specificity mitogen-activated protein kinase kinase 1 B-cell lymphoma/leukemia 10 Dual specificity mitogen-activated protein kinase kinase 2
action union
action filter_type
action find_reverse
entity proteolysis in other organism
relation biological process
type nutrient
action filter_type
action find_reverse
entity lymphotoxin A biosynthetic process
relation biological process
type nutrient
action filter_type
action find_reverse
entity interleukin-2 biosynthetic process
relation biological process
type nutrient
[{'concept': 'nutrient'}, 'biological process', 'proteolysis in other organism'] [{'concept': 'nutrient'}, 'biological process', 'lymphotoxin A biosynthetic process'] [{'concept': 'nutrient'}, 'biological process', 'interleukin-2 biosynthetic process']
SELECT DISTINCT ?x WHERE { { ?x property:biological_process resource:proteolysis_in_other_organism . ?x rdf:type ontology:nutrient } UNION { ?x property:biological_process resource:lymphotoxin_A_biosynthetic_process . ?x rdf:type ontology:nutrient } }
[]
Simple Question (Coreferenced)
Simple Question|Mult. Entity
Q21100360 Q21116488 Q21116665
P688
Q863908
USER
Which nucleic acid sequences encode those nutrients ?
(c(Q863908),P688,Q21100360) (c(Q863908),P688,Q21116488) (c(Q863908),P688,Q21116665)
action filter_type
action find_reverse
entity prev_answer
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q21100360'] [{'concept': 'Q863908'}, 'P688', 'Q21116488'] [{'concept': 'Q863908'}, 'P688', 'Q21116665']
SELECT DISTINCT ?a WHERE { ?a property:P688 ?c . VALUES ( ?c ) { ( resource:Q21172396 ) ( resource:Q21104645 ) ( resource:Q21100360 ) } . ?a rdf:type ontology:Q863908 }
Dual specificity mitogen-activated protein kinase kinase 1 B-cell lymphoma/leukemia 10 Dual specificity mitogen-activated protein kinase kinase 2
action filter_type
action find_reverse
entity prev_answer
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Dual specificity mitogen-activated protein kinase kinase 1'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'B-cell lymphoma/leukemia 10'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'Dual specificity mitogen-activated protein kinase kinase 2']
SELECT DISTINCT ?a WHERE { ?a property:encodes ?c . VALUES ( ?c ) { ( resource:Dual_specificity_mitogen-activated_protein_kinase_kinase_3 ) ( resource:Dual_specificity_mitogen-activated_protein_kinase_kinase_4 ) ( resource:Dual_specificity_mitogen-activated_protein_kinase_kinase_1 ) } . ?a rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18030793 Q18033533 Q18030794
SYSTEM
MAP2K1, BCL10, MAP2K2
Q18030793 Q18033533 Q18030794
(c(Q863908),P688,Q21100360) (c(Q863908),P688,Q21116488) (c(Q863908),P688,Q21116665)
action filter_type
action find_reverse
entity prev_answer
relation P688
type Q863908
[ANSWERS] encode those nutrients
[{'concept': 'Q863908'}, 'P688', 'Q21100360'] [{'concept': 'Q863908'}, 'P688', 'Q21116488'] [{'concept': 'Q863908'}, 'P688', 'Q21116665']
SELECT DISTINCT ?a WHERE { ?a property:P688 ?c . VALUES ( ?c ) { ( resource:Q21172396 ) ( resource:Q21104645 ) ( resource:Q21100360 ) } . ?a rdf:type ontology:Q863908 }
MAP2K1 BCL10 MAP2K2
MAP2K1, BCL10 and MAP2K2 encode those nutrients
MAP2K1 BCL10 MAP2K2
action filter_type
action find_reverse
entity prev_answer
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Dual specificity mitogen-activated protein kinase kinase 1'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'B-cell lymphoma/leukemia 10'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'Dual specificity mitogen-activated protein kinase kinase 2']
SELECT DISTINCT ?a WHERE { ?a property:encodes ?c . VALUES ( ?c ) { ( resource:Dual_specificity_mitogen-activated_protein_kinase_kinase_3 ) ( resource:Dual_specificity_mitogen-activated_protein_kinase_kinase_4 ) ( resource:Dual_specificity_mitogen-activated_protein_kinase_kinase_1 ) } . ?a rdf:type ontology:nucleic_acid_sequence }
[]