Simple Question (Direct)
Simple Question
Q21989491
P703
Q16521
USER
Where is DNA-binding protein SATB1 found ?
(Q21989491,P703,c(Q16521))
action filter_type
action find
entity Q21989491
relation P703
type Q16521
['Q21989491', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?r WHERE { ?r rdf:type ontology:Q16521 . resource:Q21989491 property:P703 ?r }
DNA-binding protein SATB1
action filter_type
action find
entity DNA-binding protein SATB1
relation found in taxon
type taxon
['DNA-binding protein SATB1', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?r WHERE { ?r rdf:type ontology:taxon . resource:DNA-binding_protein_SATB1 property:found_in_taxon ?r }
[]
taxon
Q83310
SYSTEM
Mus musculus
Q83310
(Q21989491,P703,c(Q16521))
action filter_type
action find
entity Q21989491
relation P703
type Q16521
DNA-binding protein SATB 1 is found in [ANSWER]
['Q21989491', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?r WHERE { ?r rdf:type ontology:Q16521 . resource:Q21989491 property:P703 ?r }
Mus musculus
DNA-binding protein SATB 1 is found in Mus musculus
Mus musculus
action filter_type
action find
entity DNA-binding protein SATB1
relation found in taxon
type taxon
['DNA-binding protein SATB1', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?r WHERE { ?r rdf:type ontology:taxon . resource:DNA-binding_protein_SATB1 property:found_in_taxon ?r }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21989491
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(c(Q863908),P688,Q83310)
action filter_type
action find_reverse
entity Q21989491
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q83310']
SELECT DISTINCT ?w WHERE { ?w property:P688 resource:Q21989491 . ?w rdf:type ontology:Q863908 }
DNA-binding protein SATB1
action filter_type
action find_reverse
entity DNA-binding protein SATB1
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Mus musculus']
SELECT DISTINCT ?w WHERE { ?w property:encodes resource:DNA-binding_protein_SATB1 . ?w rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18253929
SYSTEM
Satb1
Q18253929
(c(Q863908),P688,Q83310)
action filter_type
action find_reverse
entity Q21989491
relation P688
type Q863908
[ANSWER] encodes that nutrient
[{'concept': 'Q863908'}, 'P688', 'Q83310']
SELECT DISTINCT ?w WHERE { ?w property:P688 resource:Q21989491 . ?w rdf:type ontology:Q863908 }
Satb1
Satb1 encodes that nutrient
Satb1
action filter_type
action find_reverse
entity DNA-binding protein SATB1
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Mus musculus']
SELECT DISTINCT ?w WHERE { ?w property:encodes resource:DNA-binding_protein_SATB1 . ?w rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, subject is indirect
Q18253929 Q21989491
P688
Q181394
USER
Is DNA-binding protein SATB1 encoded by that nucleic acid sequence ?
(Q18253929,P688,Q21989491)
action is_in
entity Q21989491
action find
entity Q18253929
relation P688
['Q18253929', 'P688', 'Q21989491']
ASK WHERE { resource:Q18253929 property:P688 resource:Q21989491 }
Satb1 DNA-binding protein SATB1
action is_in
entity DNA-binding protein SATB1
action find
entity Satb1
relation encodes
['Satb1', 'encodes', 'DNA-binding protein SATB1']
ASK WHERE { resource:Satb1 property:encodes resource:DNA-binding_protein_SATB1 }
[]
nutrient
SYSTEM
YES
(Q18253929,P688,Q21989491)
action is_in
entity Q21989491
action find
entity Q18253929
relation P688
[ANSWER]
['Q18253929', 'P688', 'Q21989491']
ASK WHERE { resource:Q18253929 property:P688 resource:Q21989491 }
Yes
action is_in
entity DNA-binding protein SATB1
action find
entity Satb1
relation encodes
['Satb1', 'encodes', 'DNA-binding protein SATB1']
ASK WHERE { resource:Satb1 property:encodes resource:DNA-binding_protein_SATB1 }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18253929
P684
Q863908
USER
What is an otrhologus gene for that one ?
action filter_type
action find
entity Q18253929
relation P684
type Q863908
SELECT DISTINCT ?z WHERE { resource:Q18253929 property:P684 ?z . ?z rdf:type ontology:Q863908 }
Satb1
action filter_type
action find
entity Satb1
relation ortholog
type nucleic acid sequence
SELECT DISTINCT ?z WHERE { resource:Satb1 property:ortholog ?z . ?z rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18031378
SYSTEM
SATB1
Q18031378
action filter_type
action find
entity Q18253929
relation P684
type Q863908
An otrhologus gene for that one is the [ANSWER]
SELECT DISTINCT ?z WHERE { resource:Q18253929 property:P684 ?z . ?z rdf:type ontology:Q863908 }
SATB1
An otrhologus gene for that one is the SATB1
SATB1
action filter_type
action find
entity Satb1
relation ortholog
type nucleic acid sequence
SELECT DISTINCT ?z WHERE { resource:Satb1 property:ortholog ?z . ?z rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q18031378 Q27550420
P702
Q181394
USER
Is F1F0 ATP synthase subunit h YLR295C the gene that is encoded by that nucleic acid sequence ?
(Q27550420,P702,Q18031378)
action is_in
entity Q27550420
action find
entity Q18031378
relation P702
['Q27550420', 'P702', 'Q18031378']
ASK WHERE { resource:Q18031378 property:P702 resource:Q27550420 }
SATB1 F1F0 ATP synthase subunit h YLR295C
action is_in
entity F1F0 ATP synthase subunit h YLR295C
action find
entity SATB1
relation encoded by
['F1F0 ATP synthase subunit h YLR295C', 'encoded by', 'SATB1']
ASK WHERE { resource:SATB1 property:encoded_by resource:F1F0_ATP_synthase_subunit_h_YLR295C }
[]
nutrient
SYSTEM
NO
(Q27550420,P702,Q18031378)
action is_in
entity Q27550420
action find
entity Q18031378
relation P702
[ANSWER]
['Q27550420', 'P702', 'Q18031378']
ASK WHERE { resource:Q18031378 property:P702 resource:Q27550420 }
No
action is_in
entity F1F0 ATP synthase subunit h YLR295C
action find
entity SATB1
relation encoded by
['F1F0 ATP synthase subunit h YLR295C', 'encoded by', 'SATB1']
ASK WHERE { resource:SATB1 property:encoded_by resource:F1F0_ATP_synthase_subunit_h_YLR295C }
[]
Verification (Boolean) (All)
Verification|3 entities, all direct, 2 are query entities
Q21989491 Q18253929 Q23178368
P702
Q863908
USER
Does Satb1 and hypothetical protein    EF1262 encode DNA-binding protein SATB1 ?
(Q21989491,P702,Q18253929) (Q21989491,P702,Q23178368)
action is_in
entity Q21989491
action intersection
action find_reverse
entity Q18253929
relation P702
action find_reverse
entity Q23178368
relation P702
['Q21989491', 'P702', 'Q18253929'] ['Q21989491', 'P702', 'Q23178368']
ASK WHERE { resource:Q21989491 property:P702 resource:Q23178368 . resource:Q21989491 property:P702 resource:Q18253929 }
DNA-binding protein SATB1 Satb1 hypothetical protein    EF1262
action is_in
entity DNA-binding protein SATB1
action intersection
action find_reverse
entity Satb1
relation encoded by
action find_reverse
entity hypothetical protein    EF1262
relation encoded by
['DNA-binding protein SATB1', 'encoded by', 'Satb1'] ['DNA-binding protein SATB1', 'encoded by', 'hypothetical protein    EF1262']
ASK WHERE { resource:DNA-binding_protein_SATB1 property:encoded_by resource:hypothetical_protein____EF1262 . resource:DNA-binding_protein_SATB1 property:encoded_by resource:Satb1 }
[]
nucleic acid sequence
SYSTEM
YES and NO respectively
(Q21989491,P702,Q18253929) (Q21989491,P702,Q23178368)
action is_in
entity Q21989491
action intersection
action find_reverse
entity Q18253929
relation P702
action find_reverse
entity Q23178368
relation P702
[ANSWER]
['Q21989491', 'P702', 'Q18253929'] ['Q21989491', 'P702', 'Q23178368']
ASK WHERE { resource:Q21989491 property:P702 resource:Q23178368 . resource:Q21989491 property:P702 resource:Q18253929 }
YES and NO respectively
action is_in
entity DNA-binding protein SATB1
action intersection
action find_reverse
entity Satb1
relation encoded by
action find_reverse
entity hypothetical protein    EF1262
relation encoded by
['DNA-binding protein SATB1', 'encoded by', 'Satb1'] ['DNA-binding protein SATB1', 'encoded by', 'hypothetical protein    EF1262']
ASK WHERE { resource:DNA-binding_protein_SATB1 property:encoded_by resource:hypothetical_protein____EF1262 . resource:DNA-binding_protein_SATB1 property:encoded_by resource:Satb1 }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21989491
P681
Q5058355
USER
Which is the cell component of that nutrient ?
action filter_type
action find
entity Q21989491
relation P681
type Q5058355
SELECT DISTINCT ?y WHERE { resource:Q21989491 property:P681 ?y . ?y rdf:type ontology:Q5058355 }
DNA-binding protein SATB1
action filter_type
action find
entity DNA-binding protein SATB1
relation cell component
type cellular component
SELECT DISTINCT ?y WHERE { resource:DNA-binding_protein_SATB1 property:cell_component ?y . ?y rdf:type ontology:cellular_component }
[]
cellular component
Q180951
SYSTEM
chromatin
Q180951
action filter_type
action find
entity Q21989491
relation P681
type Q5058355
[ANSWER] is the cell component of that nutrient
SELECT DISTINCT ?y WHERE { resource:Q21989491 property:P681 ?y . ?y rdf:type ontology:Q5058355 }
chromatin
Chromatin is the cell component of that nutrient
chromatin
action filter_type
action find
entity DNA-binding protein SATB1
relation cell component
type cellular component
SELECT DISTINCT ?y WHERE { resource:DNA-binding_protein_SATB1 property:cell_component ?y . ?y rdf:type ontology:cellular_component }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation|Incomplete
Q21497692 Q21989491
P681
Q5058355
USER
Or Protein FAM69C?
OR((Q21989491,P681,c(Q5058355)), (Q21497692,P681,c(Q5058355)))
action filter_type
action union
action find
entity Q21989491
relation P681
action find
entity Q21497692
relation P681
type Q5058355
{'OR': [['Q21989491', 'P681', {'concept': 'Q5058355'}], ['Q21497692', 'P681', {'concept': 'Q5058355'}]]}
SELECT DISTINCT ?h WHERE { { { resource:Q21989491 property:P681 ?h } UNION { resource:Q21497692 property:P681 ?h } } . ?h rdf:type ontology:Q5058355 }
Protein FAM69C DNA-binding protein SATB1
action filter_type
action union
action find
entity DNA-binding protein SATB1
relation cell component
action find
entity Protein FAM69C
relation cell component
type cellular component
{'OR': [['DNA-binding protein SATB1', 'cell component', {'concept': 'cellular component'}], ['Protein FAM69C', 'cell component', {'concept': 'cellular component'}]]}
SELECT DISTINCT ?h WHERE { { { resource:DNA-binding_protein_SATB1 property:cell_component ?h } UNION { resource:Protein_FAM69C property:cell_component ?h } } . ?h rdf:type ontology:cellular_component }
[]
cellular component
Q79927 Q14329032 Q180951
SYSTEM
endoplasmic reticulum, endoplasmic reticulum membrane, chromatin
Q79927 Q14329032 Q180951
OR((Q21989491,P681,c(Q5058355)), (Q21497692,P681,c(Q5058355)))
action filter_type
action union
action find
entity Q21989491
relation P681
action find
entity Q21497692
relation P681
type Q5058355
[ANSWERS]
{'OR': [['Q21989491', 'P681', {'concept': 'Q5058355'}], ['Q21497692', 'P681', {'concept': 'Q5058355'}]]}
SELECT DISTINCT ?h WHERE { { { resource:Q21989491 property:P681 ?h } UNION { resource:Q21497692 property:P681 ?h } } . ?h rdf:type ontology:Q5058355 }
endoplasmic reticulum endoplasmic reticulum membrane chromatin
endoplasmic reticulum endoplasmic reticulum membrane chromatin
action filter_type
action union
action find
entity DNA-binding protein SATB1
relation cell component
action find
entity Protein FAM69C
relation cell component
type cellular component
{'OR': [['DNA-binding protein SATB1', 'cell component', {'concept': 'cellular component'}], ['Protein FAM69C', 'cell component', {'concept': 'cellular component'}]]}
SELECT DISTINCT ?h WHERE { { { resource:DNA-binding_protein_SATB1 property:cell_component ?h } UNION { resource:Protein_FAM69C property:cell_component ?h } } . ?h rdf:type ontology:cellular_component }
[]