Simple Question (Direct)
Simple Question
Q27762724
P702
Q863908
USER
What is the gene that encodes tRNA pseudouridine synthase ACD    TM1574 ?
(Q27762724,P702,c(Q863908))
action filter_type
action find
entity Q27762724
relation P702
type Q863908
['Q27762724', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:Q863908 . resource:Q27762724 property:P702 ?j }
tRNA pseudouridine synthase ACD    TM1574
action filter_type
action find
entity tRNA pseudouridine synthase ACD    TM1574
relation encoded by
type nucleic acid sequence
['tRNA pseudouridine synthase ACD    TM1574', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:nucleic_acid_sequence . resource:tRNA_pseudouridine_synthase_ACD____TM1574 property:encoded_by ?j }
[]
nucleic acid sequence
Q23300418
SYSTEM
tRNA pseudouridine synthase ACD    TM1574
Q23300418
(Q27762724,P702,c(Q863908))
action filter_type
action find
entity Q27762724
relation P702
type Q863908
The gene that encodes tRNA pseudouridine synthase ACD TM 1574 is codes tRNA pseudouridine synthase ACD TM1574
['Q27762724', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:Q863908 . resource:Q27762724 property:P702 ?j }
tRNA pseudouridine synthase ACD    TM1574
The gene that encodes tRNA pseudouridine synthase ACD TM 1574 is codes tRNA pseudouridine synthase ACD TM1574
tRNA pseudouridine synthase ACD    TM1574
action filter_type
action find
entity tRNA pseudouridine synthase ACD    TM1574
relation encoded by
type nucleic acid sequence
['tRNA pseudouridine synthase ACD    TM1574', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:nucleic_acid_sequence . resource:tRNA_pseudouridine_synthase_ACD____TM1574 property:encoded_by ?j }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q27762724
P703
Q631147
USER
Which taxon is that nutrient a part of ?
(Q23300418,P703,c(Q631147))
action filter_type
action find
entity Q27762724
relation P703
type Q631147
['Q23300418', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?w WHERE { resource:Q27762724 property:P703 ?w . ?w rdf:type ontology:Q631147 }
tRNA pseudouridine synthase ACD    TM1574
action filter_type
action find
entity tRNA pseudouridine synthase ACD    TM1574
relation found in taxon
type infraspecific name
['tRNA pseudouridine synthase ACD    TM1574', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?w WHERE { resource:tRNA_pseudouridine_synthase_ACD____TM1574 property:found_in_taxon ?w . ?w rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102991
SYSTEM
Thermotoga maritima MSB8
Q21102991
(Q23300418,P703,c(Q631147))
action filter_type
action find
entity Q27762724
relation P703
type Q631147
Which taxon is that nutrient a part of
['Q23300418', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?w WHERE { resource:Q27762724 property:P703 ?w . ?w rdf:type ontology:Q631147 }
Thermotoga maritima MSB8
Which taxon is that nutrient a part of
Thermotoga maritima MSB8
action filter_type
action find
entity tRNA pseudouridine synthase ACD    TM1574
relation found in taxon
type infraspecific name
['tRNA pseudouridine synthase ACD    TM1574', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?w WHERE { resource:tRNA_pseudouridine_synthase_ACD____TM1574 property:found_in_taxon ?w . ?w rdf:type ontology:infraspecific_name }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q23151661
Q631147
USER
And also tell me about ATPase    Psyr_4025?
(Q23151661,P703,c(Q631147))
action filter_type
action find
entity Q23151661
relation P703
type Q631147
['Q23151661', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?s WHERE { resource:Q23151661 property:P703 ?s . ?s rdf:type ontology:Q631147 }
ATPase    Psyr_4025
action filter_type
action find
entity ATPase    Psyr_4025
relation found in taxon
type infraspecific name
['ATPase    Psyr_4025', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?s WHERE { resource:ATPase____Psyr_4025 property:found_in_taxon ?s . ?s rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21079490
SYSTEM
Pseudomonas syringae pv. syringae B728a
Q21079490
(Q23151661,P703,c(Q631147))
action filter_type
action find
entity Q23151661
relation P703
type Q631147
[ANSWER]
['Q23151661', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?s WHERE { resource:Q23151661 property:P703 ?s . ?s rdf:type ontology:Q631147 }
Pseudomonas syringae pv. syringae B728a
Pseudomonas syringae pv. syringae B728a
action filter_type
action find
entity ATPase    Psyr_4025
relation found in taxon
type infraspecific name
['ATPase    Psyr_4025', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?s WHERE { resource:ATPase____Psyr_4025 property:found_in_taxon ?s . ?s rdf:type ontology:infraspecific_name }
[]
Quantitative Reasoning (All)
Quantitative|Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q181394 Q8386 Q181394
USER
Which nutrients do exactly 17 drugs or nutrients interact with ?
(c(Q8386)|c(Q181394),P129,c(Q181394))
action equal
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
value 17
[[{'concept': 'Q8386'}, {'concept': 'Q181394'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?z WHERE { { SELECT DISTINCT ( COUNT ( ?m ) AS ?i ) ?z WHERE { ?m rdf:type ?d . VALUES ( ?d ) { ( ontology:Q8386 ) ( ontology:Q181394 ) } } GROUP BY ?z } . FILTER ( ?i = 17 ) }
action equal
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
value 17
[[{'concept': 'drug'}, {'concept': 'nutrient'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?z WHERE { { SELECT DISTINCT ( COUNT ( ?m ) AS ?i ) ?z WHERE { ?m rdf:type ?d . VALUES ( ?d ) { ( ontology:drug ) ( ontology:nutrient ) } } GROUP BY ?z } . FILTER ( ?i = 17 ) }
[]
nutrient drug nutrient
Q2663095 Q21115052
SYSTEM
Glucocorticoid receptor, 5-hydroxytryptamine receptor 1F
Q2663095 Q21115052
(c(Q8386)|c(Q181394),P129,c(Q181394))
action equal
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
value 17
Exactly 17 drugs or nutrients interact with [ANSWERS]
[[{'concept': 'Q8386'}, {'concept': 'Q181394'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?z WHERE { { SELECT DISTINCT ( COUNT ( ?m ) AS ?i ) ?z WHERE { ?m rdf:type ?d . VALUES ( ?d ) { ( ontology:Q8386 ) ( ontology:Q181394 ) } } GROUP BY ?z } . FILTER ( ?i = 17 ) }
Glucocorticoid receptor 5-hydroxytryptamine receptor 1F
Exactly 17 drugs or nutrients interact with Glucocorticoid receptor and 5-hydroxytryptamine receptor 1F
Glucocorticoid receptor 5-hydroxytryptamine receptor 1F
action equal
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
value 17
[[{'concept': 'drug'}, {'concept': 'nutrient'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?z WHERE { { SELECT DISTINCT ( COUNT ( ?m ) AS ?i ) ?z WHERE { ?m rdf:type ?d . VALUES ( ?d ) { ( ontology:drug ) ( ontology:nutrient ) } } GROUP BY ?z } . FILTER ( ?i = 17 ) }
[]
Quantitative Reasoning (All)
Quantitative|Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q181394 Q181394 Q8386
USER
Which nutrients do approximately 27 nutrients or drugs contact with ?
(c(Q181394)|c(Q8386),P129,c(Q181394))
action approx
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
value 27
[[{'concept': 'Q181394'}, {'concept': 'Q8386'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?s WHERE { { SELECT DISTINCT ( COUNT ( ?o ) AS ?y ) ?s WHERE { VALUES ( ?k ) { ( ontology:Q8386 ) ( ontology:Q181394 ) } . ?o rdf:type ?k } GROUP BY ?s } . FILTER ( ?y = 27 ) }
action approx
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
value 27
[[{'concept': 'nutrient'}, {'concept': 'drug'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?s WHERE { { SELECT DISTINCT ( COUNT ( ?o ) AS ?y ) ?s WHERE { VALUES ( ?k ) { ( ontology:drug ) ( ontology:nutrient ) } . ?o rdf:type ?k } GROUP BY ?s } . FILTER ( ?y = 27 ) }
[]
nutrient nutrient drug
Q4639596 Q415364 Q21110872
SYSTEM
5-hydroxytryptamine receptor 2B, Prostaglandin G/H synthase 2, D(3) dopamine receptor
Q7050954 Q287961 Q410142 Q288797 Q4639596 Q4734884 Q415364 Q21110872 Q4734892 Q21115046 Q21109363
(c(Q181394)|c(Q8386),P129,c(Q181394))
action approx
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
value 27
[ANSWERS]
[[{'concept': 'Q181394'}, {'concept': 'Q8386'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?s WHERE { { SELECT DISTINCT ( COUNT ( ?o ) AS ?y ) ?s WHERE { VALUES ( ?k ) { ( ontology:Q8386 ) ( ontology:Q181394 ) } . ?o rdf:type ?k } GROUP BY ?s } . FILTER ( ?y = 27 ) }
Sodium-dependent noradrenaline transporter Beta-2 adrenergic receptor Sodium-dependent serotonin transporter 5-hydroxytryptamine receptor 1B 5-hydroxytryptamine receptor 2B Alpha-1A adrenergic receptor Prostaglandin G/H synthase 2 D(3) dopamine receptor Alpha-2A adrenergic receptor 5-hydroxytryptamine receptor 1D 5-hydroxytryptamine receptor 6
Which nutrients approximately 27 nutrients or drugs contact with
5-hydroxytryptamine receptor 2B Prostaglandin G/H synthase 2 D(3) dopamine receptor
action approx
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
value 27
[[{'concept': 'nutrient'}, {'concept': 'drug'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?s WHERE { { SELECT DISTINCT ( COUNT ( ?o ) AS ?y ) ?s WHERE { VALUES ( ?k ) { ( ontology:drug ) ( ontology:nutrient ) } . ?o rdf:type ?k } GROUP BY ?s } . FILTER ( ?y = 27 ) }
[]
Clarification
Simple Question|Single Entity|Indirect
Q21110872
P682
Q9332
USER
What biological processes are that nutrient involved in ?
(Q21110872,P682,c(Q9332))
action filter_type
action find
entity Q21110872
relation P682
type Q9332
['Q21110872', 'P682', {'concept': 'Q9332'}]
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:Q9332 . resource:Q21110872 property:P682 ?u }
D(3) dopamine receptor
action filter_type
action find
entity D(3) dopamine receptor
relation biological process
type behavior
['D(3) dopamine receptor', 'biological process', {'concept': 'behavior'}]
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:behavior . resource:D(3)_dopamine_receptor property:biological_process ?u }
[]
behavior
Clarification for simple ques.
Q415364
SYSTEM
Did you mean Prostaglandin G/H synthase 2 ?
Q4639596 Q415364 Q21110872
(Q4639596,P682,c(Q9332)) (Q415364,P682,c(Q9332)) (Q21110872,P682,c(Q9332))
[ANSWER]
['Q4639596', 'P682', {'concept': 'Q9332'}] ['Q415364', 'P682', {'concept': 'Q9332'}] ['Q21110872', 'P682', {'concept': 'Q9332'}]
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:Q9332 . resource:Q21110872 property:P682 ?u }
5-hydroxytryptamine receptor 2B Prostaglandin G/H synthase 2 D(3) dopamine receptor
Did you mean Prostaglandin G/H synthase 2 ?
Prostaglandin G/H synthase 2
['5-hydroxytryptamine receptor 2B', 'biological process', {'concept': 'behavior'}] ['Prostaglandin G/H synthase 2', 'biological process', {'concept': 'behavior'}] ['D(3) dopamine receptor', 'biological process', {'concept': 'behavior'}]
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:behavior . resource:D(3)_dopamine_receptor property:biological_process ?u }
[]
Simple Question (Coreferenced)
USER
No, I meant D(3) dopamine receptor. Could you tell me the answer for that?
(Q21110872,P682,c(Q9332))
Q21110872
['Q21110872', 'P682', {'concept': 'Q9332'}]
['D(3) dopamine receptor', 'biological process', {'concept': 'behavior'}]
[]
Q921513 Q14819853
SYSTEM
social behavior, learning or memory
Q921513 Q14819853
(Q21110872,P682,c(Q9332))
action filter_type
action find
entity Q21110872
relation P682
type Q9332
That nutrient are the [ANSWERS]
['Q21110872', 'P682', {'concept': 'Q9332'}]
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:Q9332 . resource:Q21110872 property:P682 ?u }
social behavior learning or memory
That nutrient are the social behavior and learning or memory
social behavior learning or memory
action filter_type
action find
entity D(3) dopamine receptor
relation biological process
type behavior
['D(3) dopamine receptor', 'biological process', {'concept': 'behavior'}]
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:behavior . resource:D(3)_dopamine_receptor property:biological_process ?u }
[]
Clarification
Simple Question|Single Entity|Indirect
Q14819853
P682
Q181394
USER
Which nutrients are involved in that behavior ?
(c(Q181394),P682,Q14819853)
action filter_type
action find_reverse
entity Q14819853
relation P682
type Q181394
[{'concept': 'Q181394'}, 'P682', 'Q14819853']
SELECT DISTINCT ?r WHERE { ?r property:P682 resource:Q14819853 . ?r rdf:type ontology:Q181394 }
learning or memory
action filter_type
action find_reverse
entity learning or memory
relation biological process
type nutrient
[{'concept': 'nutrient'}, 'biological process', 'learning or memory']
SELECT DISTINCT ?r WHERE { ?r property:biological_process resource:learning_or_memory . ?r rdf:type ontology:nutrient }
[]
nutrient
Clarification for simple ques.
Q14819853
SYSTEM
Did you mean learning or memory ?
Q921513 Q14819853
(c(Q181394),P682,Q921513) (c(Q181394),P682,Q14819853)
[ANSWER]
[{'concept': 'Q181394'}, 'P682', 'Q921513'] [{'concept': 'Q181394'}, 'P682', 'Q14819853']
SELECT DISTINCT ?r WHERE { ?r property:P682 resource:Q14819853 . ?r rdf:type ontology:Q181394 }
social behavior learning or memory
Did you mean learning or memory ?
learning or memory
[{'concept': 'nutrient'}, 'biological process', 'social behavior'] [{'concept': 'nutrient'}, 'biological process', 'learning or memory']
SELECT DISTINCT ?r WHERE { ?r property:biological_process resource:learning_or_memory . ?r rdf:type ontology:nutrient }
[]
Simple Question (Coreferenced)
USER
Yes
(c(Q181394),P682,Q14819853)
[{'concept': 'Q181394'}, 'P682', 'Q14819853']
[{'concept': 'nutrient'}, 'biological process', 'learning or memory']
[]
Q424401 Q587961 Q416356
SYSTEM
Epidermal growth factor receptor, Tyrosine-protein kinase ABL1, Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN
Q4442399 Q21112658 Q21496048 Q1982330 Q21136618 Q21110872 Q21118600 Q21494920 Q5572289 Q21496848 Q15319474 Q21125134 Q21110296 Q21498748 Q4051790 Q14881308 Q21498352 Q21984343 Q21111198 Q21096129 Q21110775 Q424401 Q14882525 Q21114845 Q21992423 Q21985118 Q21118717 Q21985592 Q21493960 Q416356 Q14865772 Q904550 Q587961 Q21419014 Q21986746 Q21989397 Q21988250 Q21108021 Q4377404 Q21420559 Q21115915 Q21986929 Q21118862 Q21201294 Q21986759 Q21111308 Q21137315 Q14916447 Q21981692 Q21116351 Q21981591 Q21107840 Q21497956 Q21985095 Q14914138 Q5049057 Q386664 Q14874000 Q21499490 Q14901156 Q21110295 Q22676971 Q21115502 Q21986777 Q21988549 Q21498710 Q21125418 Q21110101 Q21982906 Q21982905 Q418097 Q21499308 Q21990747 Q14878408 Q21494634 Q14819916 Q7799751 Q21988969 Q21983452 Q21121418 Q5205645 Q21119191 Q21115815 Q21115816 Q22677261 Q21496912 Q14863333
(c(Q181394),P682,Q14819853)
action filter_type
action find_reverse
entity Q14819853
relation P682
type Q181394
[ANSWERS] are involved in that behavior
[{'concept': 'Q181394'}, 'P682', 'Q14819853']
SELECT DISTINCT ?r WHERE { ?r property:P682 resource:Q14819853 . ?r rdf:type ontology:Q181394 }
Steryl-sulfatase E3 ubiquitin-protein ligase AMFR Glutamate receptor ionotropic, NMDA 2B Platelet-activating factor acetylhydrolase IB subunit alpha Zinc finger protein 385A D(3) dopamine receptor LIM/homeobox protein Lhx8 Calbindin Glucagon-like peptide 1 receptor AF4/FMR2 family member 2 Platelet-activating factor acetylhydrolase IB subunit alpha Ganglioside GM2 activator Galanin receptor type 3 Abl interactor 2 High affinity nerve growth factor receptor Major prion protein E3 SUMO-protein ligase EGR2 Protein kinase C gamma type Adenylate cyclase type 8 Major prion protein Corticotropin-releasing factor-binding protein Epidermal growth factor receptor Huntingtin Protein kinase C gamma type Zinc finger protein 385A Myocyte-specific enhancer factor 2C Myocyte-specific enhancer factor 2C cAMP-dependent protein kinase type I-beta regulatory subunit Protein BHLHb9 Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN Glucose-6-phosphate isomerase Urocortin Tyrosine-protein kinase ABL1 Dyslexia susceptibility 1 candidate gene 1 protein homolog Protein S100-B Receptor-type tyrosine-protein phosphatase zeta Lysosomal alpha-mannosidase Protein S100-B Presenilin-1 Glucagon-like peptide 1 receptor Frizzled-9 Thyroid hormone receptor alpha Glutamate receptor ionotropic, NMDA 1 Cannabinoid receptor 1 Protein O-mannose kinase Receptor-type tyrosine-protein phosphatase zeta Phosphatase and tensin-like protein Urocortin Epidermal growth factor receptor AF4/FMR2 family member 2 Frizzled-9 Voltage-gated potassium channel subunit beta-1 Acyl-CoA-binding protein LIM/homeobox protein Lhx8 Natural resistance-associated macrophage protein 2 Caspase-3 Corticoliberin Tyrosine-protein kinase ABL1 E3 ubiquitin-protein ligase AMFR High affinity nerve growth factor receptor Galanin receptor type 2 Calbindin Protein BHLHb9 SH3 and multiple ankyrin repeat domains protein 3 Ganglioside GM2 activator SHC-transforming protein 3 Tropomodulin-2 E3 SUMO-protein ligase EGR2 Glutamate receptor ionotropic, NMDA 1 Glutamate receptor ionotropic, NMDA 2A Glucose-6-phosphate isomerase Cannabinoid receptor 1 Tropomodulin-2 Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN Voltage-gated potassium channel subunit beta-1 Corticoliberin Thyroid hormone receptor alpha Presenilin-2 Laminin subunit beta-1 Protein O-mannose kinase Natural resistance-associated macrophage protein 2 cAMP-dependent protein kinase type I-beta regulatory subunit Glutamate receptor ionotropic, NMDA 2A Glutamate receptor ionotropic, NMDA 2B SHC-transforming protein 3 Presenilin-1 Brain-derived neurotrophic factor
Epidermal growth factor receptor, Tyrosine-protein kinase ABL1 and Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN are involved in that behavior
Epidermal growth factor receptor Tyrosine-protein kinase ABL1 Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN
action filter_type
action find_reverse
entity learning or memory
relation biological process
type nutrient
[{'concept': 'nutrient'}, 'biological process', 'learning or memory']
SELECT DISTINCT ?r WHERE { ?r property:biological_process resource:learning_or_memory . ?r rdf:type ontology:nutrient }
[]