Simple Question (Direct)
Simple Question
Q22259339
P702
Q863908
USER
Which nucleic acid sequence encodes 30S ribosomal protein S12    LBA0287 ?
(Q22259339,P702,c(Q863908))
action filter_type
action find
entity Q22259339
relation P702
type Q863908
['Q22259339', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?x WHERE { resource:Q22259339 property:P702 ?x . ?x rdf:type ontology:Q863908 }
30S ribosomal protein S12    LBA0287
action filter_type
action find
entity 30S ribosomal protein S12    LBA0287
relation encoded by
type nucleic acid sequence
['30S ribosomal protein S12    LBA0287', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?x WHERE { resource:30S_ribosomal_protein_S12____LBA0287 property:encoded_by ?x . ?x rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q22240230
SYSTEM
30S ribosomal protein S12    LBA0287
Q22240230
(Q22259339,P702,c(Q863908))
action filter_type
action find
entity Q22259339
relation P702
type Q863908
Protein 30S ribosomal protein S12 LBA0287 encodes 30S ribosomal protein S12 LBA0287
['Q22259339', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?x WHERE { resource:Q22259339 property:P702 ?x . ?x rdf:type ontology:Q863908 }
30S ribosomal protein S12    LBA0287
Protein 30S ribosomal protein S12 LBA0287 encodes 30S ribosomal protein S12 LBA0287
30S ribosomal protein S12    LBA0287
action filter_type
action find
entity 30S ribosomal protein S12    LBA0287
relation encoded by
type nucleic acid sequence
['30S ribosomal protein S12    LBA0287', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?x WHERE { resource:30S_ribosomal_protein_S12____LBA0287 property:encoded_by ?x . ?x rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q22259339
P681
Q15989253
USER
Which part is a component of 30S ribosomal protein S12    LBA0287 ?
(Q22259339,P681,c(Q15989253))
action filter_type
action find
entity Q22259339
relation P681
type Q15989253
['Q22259339', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:Q15989253 . resource:Q22259339 property:P681 ?m }
30S ribosomal protein S12    LBA0287
action filter_type
action find
entity 30S ribosomal protein S12    LBA0287
relation cell component
type part
['30S ribosomal protein S12    LBA0287', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:part . resource:30S_ribosomal_protein_S12____LBA0287 property:cell_component ?m }
[]
part
Q42244
SYSTEM
ribosome
Q42244
(Q22259339,P681,c(Q15989253))
action filter_type
action find
entity Q22259339
relation P681
type Q15989253
The [ANSWER] is a component of 30S ribosomal protein S12 LBA0287
['Q22259339', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:Q15989253 . resource:Q22259339 property:P681 ?m }
ribosome
The ribosome is a component of 30S ribosomal protein S12 LBA0287
ribosome
action filter_type
action find
entity 30S ribosomal protein S12    LBA0287
relation cell component
type part
['30S ribosomal protein S12    LBA0287', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:part . resource:30S_ribosomal_protein_S12____LBA0287 property:cell_component ?m }
[]
Simple Question (Ellipsis)
Incomplete|object parent is changed, subject and predicate remain same
Q22259339
Q5058355
USER
And which cellular component?
(Q22259339,P681,c(Q5058355))
action filter_type
action find
entity Q22259339
relation P681
type Q5058355
['Q22259339', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?v WHERE { resource:Q22259339 property:P681 ?v . ?v rdf:type ontology:Q5058355 }
30S ribosomal protein S12    LBA0287
action filter_type
action find
entity 30S ribosomal protein S12    LBA0287
relation cell component
type cellular component
['30S ribosomal protein S12    LBA0287', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?v WHERE { resource:30S_ribosomal_protein_S12____LBA0287 property:cell_component ?v . ?v rdf:type ontology:cellular_component }
[]
cellular component
Q3824358
SYSTEM
intracellular
Q3824358
(Q22259339,P681,c(Q5058355))
action filter_type
action find
entity Q22259339
relation P681
type Q5058355
[ANSWER]
['Q22259339', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?v WHERE { resource:Q22259339 property:P681 ?v . ?v rdf:type ontology:Q5058355 }
intracellular
intracellular
action filter_type
action find
entity 30S ribosomal protein S12    LBA0287
relation cell component
type cellular component
['30S ribosomal protein S12    LBA0287', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?v WHERE { resource:30S_ribosomal_protein_S12____LBA0287 property:cell_component ?v . ?v rdf:type ontology:cellular_component }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q22259339
P688
Q863908
USER
Which nucleic acid sequence encodes 30S ribosomal protein S12    LBA0287 ?
(c(Q863908),P688,Q22259339)
action filter_type
action find_reverse
entity Q22259339
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q22259339']
SELECT DISTINCT ?l WHERE { ?l property:P688 resource:Q22259339 . ?l rdf:type ontology:Q863908 }
30S ribosomal protein S12    LBA0287
action filter_type
action find_reverse
entity 30S ribosomal protein S12    LBA0287
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', '30S ribosomal protein S12    LBA0287']
SELECT DISTINCT ?l WHERE { ?l property:encodes resource:30S_ribosomal_protein_S12____LBA0287 . ?l rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q22240230
SYSTEM
30S ribosomal protein S12    LBA0287
Q22240230
(c(Q863908),P688,Q22259339)
action filter_type
action find_reverse
entity Q22259339
relation P688
type Q863908
Protein 30S ribosomal protein S12 LBA0287 encodes 30S ribosomal protein S12 LBA0287
[{'concept': 'Q863908'}, 'P688', 'Q22259339']
SELECT DISTINCT ?l WHERE { ?l property:P688 resource:Q22259339 . ?l rdf:type ontology:Q863908 }
30S ribosomal protein S12    LBA0287
Protein 30S ribosomal protein S12 LBA0287 encodes 30S ribosomal protein S12 LBA0287
30S ribosomal protein S12    LBA0287
action filter_type
action find_reverse
entity 30S ribosomal protein S12    LBA0287
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', '30S ribosomal protein S12    LBA0287']
SELECT DISTINCT ?l WHERE { ?l property:encodes resource:30S_ribosomal_protein_S12____LBA0287 . ?l rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q22240230
P703
Q631147
USER
Where is that nucleic acid sequence found ?
(Q22240230,P703,c(Q631147))
action filter_type
action find
entity Q22240230
relation P703
type Q631147
['Q22240230', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:Q631147 . resource:Q22240230 property:P703 ?s }
30S ribosomal protein S12    LBA0287
action filter_type
action find
entity 30S ribosomal protein S12    LBA0287
relation found in taxon
type infraspecific name
['30S ribosomal protein S12    LBA0287', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:infraspecific_name . resource:30S_ribosomal_protein_S12____LBA0287 property:found_in_taxon ?s }
[]
infraspecific name
Q21102977
SYSTEM
Lactobacillus acidophilus NCFM
Q21102977
(Q22240230,P703,c(Q631147))
action filter_type
action find
entity Q22240230
relation P703
type Q631147
That nucleic acid sequence is found in [ANSWER]
['Q22240230', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:Q631147 . resource:Q22240230 property:P703 ?s }
Lactobacillus acidophilus NCFM
That nucleic acid sequence is found in Lactobacillus acidophilus NCFM
Lactobacillus acidophilus NCFM
action filter_type
action find
entity 30S ribosomal protein S12    LBA0287
relation found in taxon
type infraspecific name
['30S ribosomal protein S12    LBA0287', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:infraspecific_name . resource:30S_ribosomal_protein_S12____LBA0287 property:found_in_taxon ?s }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation|Incomplete
Q23151841 Q22240230
P703
Q631147
USER
Or ribonuclease H    ECUMN_0211?
OR((Q22240230,P703,c(Q631147)), (Q23151841,P703,c(Q631147)))
action filter_type
action union
action find
entity Q22240230
relation P703
action find
entity Q23151841
relation P703
type Q631147
{'OR': [['Q22240230', 'P703', {'concept': 'Q631147'}], ['Q23151841', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?h WHERE { { { resource:Q23151841 property:P703 ?h } UNION { resource:Q22240230 property:P703 ?h } } . ?h rdf:type ontology:Q631147 }
ribonuclease H    ECUMN_0211 30S ribosomal protein S12    LBA0287
action filter_type
action union
action find
entity 30S ribosomal protein S12    LBA0287
relation found in taxon
action find
entity ribonuclease H    ECUMN_0211
relation found in taxon
type infraspecific name
{'OR': [['30S ribosomal protein S12    LBA0287', 'found in taxon', {'concept': 'infraspecific name'}], ['ribonuclease H    ECUMN_0211', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?h WHERE { { { resource:ribonuclease_H____ECUMN_0211 property:found_in_taxon ?h } UNION { resource:30S_ribosomal_protein_S12____LBA0287 property:found_in_taxon ?h } } . ?h rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102977 Q21102931
SYSTEM
Lactobacillus acidophilus NCFM, Escherichia coli UMN026
Q21102977 Q21102931
OR((Q22240230,P703,c(Q631147)), (Q23151841,P703,c(Q631147)))
action filter_type
action union
action find
entity Q22240230
relation P703
action find
entity Q23151841
relation P703
type Q631147
[ANSWERS]
{'OR': [['Q22240230', 'P703', {'concept': 'Q631147'}], ['Q23151841', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?h WHERE { { { resource:Q23151841 property:P703 ?h } UNION { resource:Q22240230 property:P703 ?h } } . ?h rdf:type ontology:Q631147 }
Lactobacillus acidophilus NCFM Escherichia coli UMN026
Lactobacillus acidophilus NCFM Escherichia coli UMN026
action filter_type
action union
action find
entity 30S ribosomal protein S12    LBA0287
relation found in taxon
action find
entity ribonuclease H    ECUMN_0211
relation found in taxon
type infraspecific name
{'OR': [['30S ribosomal protein S12    LBA0287', 'found in taxon', {'concept': 'infraspecific name'}], ['ribonuclease H    ECUMN_0211', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?h WHERE { { { resource:ribonuclease_H____ECUMN_0211 property:found_in_taxon ?h } UNION { resource:30S_ribosomal_protein_S12____LBA0287 property:found_in_taxon ?h } } . ?h rdf:type ontology:infraspecific_name }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q23406895
Q631147
USER
And also tell me about ABC transporter permease    CLC_1896?
(Q23406895,P703,c(Q631147))
action filter_type
action find
entity Q23406895
relation P703
type Q631147
['Q23406895', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?s WHERE { resource:Q23406895 property:P703 ?s . ?s rdf:type ontology:Q631147 }
ABC transporter permease    CLC_1896
action filter_type
action find
entity ABC transporter permease    CLC_1896
relation found in taxon
type infraspecific name
['ABC transporter permease    CLC_1896', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?s WHERE { resource:ABC_transporter_permease____CLC_1896 property:found_in_taxon ?s . ?s rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102974
SYSTEM
Clostridium botulinum A str. Hall
Q21102974
(Q23406895,P703,c(Q631147))
action filter_type
action find
entity Q23406895
relation P703
type Q631147
[ANSWER]
['Q23406895', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?s WHERE { resource:Q23406895 property:P703 ?s . ?s rdf:type ontology:Q631147 }
Clostridium botulinum A str. Hall
Clostridium botulinum A str. Hall
action filter_type
action find
entity ABC transporter permease    CLC_1896
relation found in taxon
type infraspecific name
['ABC transporter permease    CLC_1896', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?s WHERE { resource:ABC_transporter_permease____CLC_1896 property:found_in_taxon ?s . ?s rdf:type ontology:infraspecific_name }
[]
Comparative Reasoning (All)
Comparative|More/Less|Mult. entity type|Indirect
P703
Q631147 Q181394 Q863908
USER
Which infraspecific names are more number of nutrients and nucleic acid sequences a part of than that infraspecific name ?
(c(Q181394)|c(Q863908),P703,c(Q631147))
action greater
action union
action find_reverse_tuple_counts
relation P703
type Q631147
type Q181394
action find_reverse_tuple_counts
relation P703
type Q631147
type Q863908
action count
action filter_multi_types
action find_reverse
entity Q21102974
relation P703
type Q181394
type Q863908
[[{'concept': 'Q181394'}, {'concept': 'Q863908'}], 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?q WHERE { { SELECT DISTINCT ?q ( COUNT ( ?b ) AS ?e ) WHERE { { ?b property:P703 ?q . ?q rdf:type ontology:Q631147 . ?b rdf:type ontology:Q181394 } UNION { ?b property:P703 ?q . ?q rdf:type ontology:Q631147 . ?b rdf:type ontology:Q863908 } } GROUP BY ?q } . { SELECT DISTINCT ( COUNT ( ?y ) AS ?j ) WHERE { ?y property:P703 resource:Q21102974 . { { ?y rdf:type ontology:Q181394 } UNION { ?y rdf:type ontology:Q863908 } } } } . FILTER ( ?e > ?j ) }
action greater
action union
action find_reverse_tuple_counts
relation found in taxon
type infraspecific name
type nutrient
action find_reverse_tuple_counts
relation found in taxon
type infraspecific name
type nucleic acid sequence
action count
action filter_multi_types
action find_reverse
entity Clostridium botulinum A str. Hall
relation found in taxon
type nutrient
type nucleic acid sequence
[[{'concept': 'nutrient'}, {'concept': 'nucleic acid sequence'}], 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?q WHERE { { SELECT DISTINCT ?q ( COUNT ( ?b ) AS ?e ) WHERE { { ?b property:found_in_taxon ?q . ?q rdf:type ontology:infraspecific_name . ?b rdf:type ontology:nutrient } UNION { ?b property:found_in_taxon ?q . ?q rdf:type ontology:infraspecific_name . ?b rdf:type ontology:nucleic_acid_sequence } } GROUP BY ?q } . { SELECT DISTINCT ( COUNT ( ?y ) AS ?j ) WHERE { ?y property:found_in_taxon resource:Clostridium_botulinum_A_str._Hall . { { ?y rdf:type ontology:nutrient } UNION { ?y rdf:type ontology:nucleic_acid_sequence } } } } . FILTER ( ?e > ?j ) }
[]
infraspecific name nutrient nucleic acid sequence
Q21102919 Q21079559 Q21102993
SYSTEM
Legionella pneumophila subsp. pneumophila str. Philadelphia 1, Salinibacter ruber DSM 13855, Burkholderia mallei ATCC 23344
Q21102993 Q21102995 Q21102996 Q21102997 Q21102998 Q21102999 Q27510868 Q21065229 Q21079489 Q21102919 Q21102943 Q21102942 Q21102941 Q21102940 Q21102947 Q21102946 Q21102920 Q21102965 Q21102966 Q21102930 Q21102987 Q21102925 Q21102924 Q21102927 Q21102986 Q21102928 Q21102918 Q21102988 Q21079490 Q21079491 Q21102984 Q21102981 Q21102973 Q21102944 Q21102954 Q21102955 Q21102956 Q21102950 Q21102953 Q21102976 Q23309229 Q21102972 Q21102959 Q21102970 Q21102971 Q21064863 Q21102931 Q21102937 Q21102934 Q21102979 Q21079559 Q21102938 Q21102939
(c(Q181394)|c(Q863908),P703,c(Q631147))
action greater
action union
action find_reverse_tuple_counts
relation P703
type Q631147
type Q181394
action find_reverse_tuple_counts
relation P703
type Q631147
type Q863908
action count
action filter_multi_types
action find_reverse
entity Q21102974
relation P703
type Q181394
type Q863908
[ANSWERS] are more number of nutrients and nucleic acid sequences a part of than that infraspecific name
[[{'concept': 'Q181394'}, {'concept': 'Q863908'}], 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?q WHERE { { SELECT DISTINCT ?q ( COUNT ( ?b ) AS ?e ) WHERE { { ?b property:P703 ?q . ?q rdf:type ontology:Q631147 . ?b rdf:type ontology:Q181394 } UNION { ?b property:P703 ?q . ?q rdf:type ontology:Q631147 . ?b rdf:type ontology:Q863908 } } GROUP BY ?q } . { SELECT DISTINCT ( COUNT ( ?y ) AS ?j ) WHERE { ?y property:P703 resource:Q21102974 . { { ?y rdf:type ontology:Q181394 } UNION { ?y rdf:type ontology:Q863908 } } } } . FILTER ( ?e > ?j ) }
Burkholderia mallei ATCC 23344 Burkholderia pseudomallei K96243 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Salmonella enterica subsp. enterica serovar Typhi str. CT18 Amycolatopsis mediterranei U32 Geobacter sulfurreducens PCA Saccharomyces cerevisiae S288c Leptospira interrogans serovar Lai str. 56601 Pseudomonas putida KT2440 Legionella pneumophila subsp. pneumophila str. Philadelphia 1 Yersinia pestis CO92 Yersinia enterocolitica subsp. enterocolitica 8081 Shigella flexneri 2a str. 301 Shigella dysenteriae Sd197 Vibrio parahaemolyticus RIMD 2210633 Vibrio fischeri ES114 Acinetobacter pittii PHEA-2 Enterococcus faecalis V583 Enterococcus faecium DO Escherichia coli O157:H7 str. Sakai Mycobacterium tuberculosis H37Rv Bordetella pertussis Tohama I Bordetella bronchiseptica 253 Enterobacter aerogenes KCTC 2190 Mycobacterium smegmatis str. MC2 155 Enterobacter cloacae subsp. cloacae ATCC 13047 Sinorhizobium meliloti 1021 Streptomyces coelicolor A3(2) Pseudomonas syringae pv. syringae B728a Xanthomonas campestris pv. campestris str. ATCC 33913 Mycobacterium bovis AF2122/97 Listeria monocytogenes EGD-e Clostridium acetobutylicum ATCC 824 Aeromonas hydrophila subsp. hydrophila ATCC 7966 Rhodospirillum rubrum ATCC 11170 Chloroflexus aurantiacus J-10-fl Staphylococcus aureus subsp. aureus NCTC 8325 Bacteroides fragilis YCH46 Rhodobacter sphaeroides 2.4.1 Peptoclostridium difficile 630 Sinorhizobium fredii NGR234 Bacillus thuringiensis serovar konkukian str. 97-27 Deinococcus radiodurans R1 Bacillus cereus ATCC 14579 Bacillus subtilis subsp. subtilis str. 168 Bordetella parapertussis Bpp5 Escherichia coli UMN026 Escherichia coli O104:H4 str. 2011C-3493 Escherichia coli O83:H1 str. NRG 857C Lactobacillus plantarum WCFS1 Salinibacter ruber DSM 13855 Escherichia coli str. K-12 substr. MG1655 Klebsiella pneumoniae subsp. pneumoniae HS11286
Legionella pneumophila subsp. pneumophila str. Philadelphia 1, Salinibacter ruber DSM 13855 and Burkholderia mallei ATCC 23344 are more number of nutrients and nucleic acid sequences a part of than that infraspecific name
Legionella pneumophila subsp. pneumophila str. Philadelphia 1 Salinibacter ruber DSM 13855 Burkholderia mallei ATCC 23344
action greater
action union
action find_reverse_tuple_counts
relation found in taxon
type infraspecific name
type nutrient
action find_reverse_tuple_counts
relation found in taxon
type infraspecific name
type nucleic acid sequence
action count
action filter_multi_types
action find_reverse
entity Clostridium botulinum A str. Hall
relation found in taxon
type nutrient
type nucleic acid sequence
[[{'concept': 'nutrient'}, {'concept': 'nucleic acid sequence'}], 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?q WHERE { { SELECT DISTINCT ?q ( COUNT ( ?b ) AS ?e ) WHERE { { ?b property:found_in_taxon ?q . ?q rdf:type ontology:infraspecific_name . ?b rdf:type ontology:nutrient } UNION { ?b property:found_in_taxon ?q . ?q rdf:type ontology:infraspecific_name . ?b rdf:type ontology:nucleic_acid_sequence } } GROUP BY ?q } . { SELECT DISTINCT ( COUNT ( ?y ) AS ?j ) WHERE { ?y property:found_in_taxon resource:Clostridium_botulinum_A_str._Hall . { { ?y rdf:type ontology:nutrient } UNION { ?y rdf:type ontology:nucleic_acid_sequence } } } } . FILTER ( ?e > ?j ) }
[]