Simple Question (Direct)
Simple Question
Q23588645
P681
Q15989253
USER
Which is the part that is a component of Putative transcriptional regulator, WhiB family    MAB_3726 ?
(Q23588645,P681,c(Q15989253))
action filter_type
action find
entity Q23588645
relation P681
type Q15989253
['Q23588645', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:Q15989253 . resource:Q23588645 property:P681 ?m }
Putative transcriptional regulator, WhiB family    MAB_3726
action filter_type
action find
entity Putative transcriptional regulator, WhiB family    MAB_3726
relation cell component
type part
['Putative transcriptional regulator, WhiB family    MAB_3726', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:part . resource:Putative_transcriptional_regulator,_WhiB_family____MAB_3726 property:cell_component ?m }
[]
part
Q79899
SYSTEM
cytoplasm
Q79899
(Q23588645,P681,c(Q15989253))
action filter_type
action find
entity Q23588645
relation P681
type Q15989253
[ANSWER] is the part that is a component of Putative transcriptional regulator, WhiB family MAB_3726
['Q23588645', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:Q15989253 . resource:Q23588645 property:P681 ?m }
cytoplasm
Cytoplasm is the part that is a component of Putative transcriptional regulator, WhiB family MAB_3726
cytoplasm
action filter_type
action find
entity Putative transcriptional regulator, WhiB family    MAB_3726
relation cell component
type part
['Putative transcriptional regulator, WhiB family    MAB_3726', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:part . resource:Putative_transcriptional_regulator,_WhiB_family____MAB_3726 property:cell_component ?m }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23588645
P680
Q44424
USER
What represents the molecular function of Putative transcriptional regulator, WhiB family    MAB_3726 ?
(Q23588645,P680,c(Q44424))
action filter_type
action find
entity Q23588645
relation P680
type Q44424
['Q23588645', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?e WHERE { resource:Q23588645 property:P680 ?e . ?e rdf:type ontology:Q44424 }
Putative transcriptional regulator, WhiB family    MAB_3726
action filter_type
action find
entity Putative transcriptional regulator, WhiB family    MAB_3726
relation molecular function
type chemical bond
['Putative transcriptional regulator, WhiB family    MAB_3726', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?e WHERE { resource:Putative_transcriptional_regulator,_WhiB_family____MAB_3726 property:molecular_function ?e . ?e rdf:type ontology:chemical_bond }
[]
chemical bond
Q13667380
SYSTEM
metal ion binding
Q13667380
(Q23588645,P680,c(Q44424))
action filter_type
action find
entity Q23588645
relation P680
type Q44424
The [ANSWER] represents the molecular function of Putative transcriptional regulator, WhiB family MAB_3726
['Q23588645', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?e WHERE { resource:Q23588645 property:P680 ?e . ?e rdf:type ontology:Q44424 }
metal ion binding
The metal ion binding represents the molecular function of Putative transcriptional regulator, WhiB family MAB_3726
metal ion binding
action filter_type
action find
entity Putative transcriptional regulator, WhiB family    MAB_3726
relation molecular function
type chemical bond
['Putative transcriptional regulator, WhiB family    MAB_3726', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?e WHERE { resource:Putative_transcriptional_regulator,_WhiB_family____MAB_3726 property:molecular_function ?e . ?e rdf:type ontology:chemical_bond }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23588645
P703
Q16521
USER
Which taxon is Putative transcriptional regulator, WhiB family    MAB_3726 found in ?
(Q23588645,P703,c(Q16521))
action filter_type
action find
entity Q23588645
relation P703
type Q16521
['Q23588645', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?g WHERE { resource:Q23588645 property:P703 ?g . ?g rdf:type ontology:Q16521 }
Putative transcriptional regulator, WhiB family    MAB_3726
action filter_type
action find
entity Putative transcriptional regulator, WhiB family    MAB_3726
relation found in taxon
type taxon
['Putative transcriptional regulator, WhiB family    MAB_3726', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?g WHERE { resource:Putative_transcriptional_regulator,_WhiB_family____MAB_3726 property:found_in_taxon ?g . ?g rdf:type ontology:taxon }
[]
taxon
Q6946978
SYSTEM
Mycobacterium abscessus
Q6946978
(Q23588645,P703,c(Q16521))
action filter_type
action find
entity Q23588645
relation P703
type Q16521
[ANSWER] is Putative transcriptional regulator, WhiB family MAB_3726 found in
['Q23588645', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?g WHERE { resource:Q23588645 property:P703 ?g . ?g rdf:type ontology:Q16521 }
Mycobacterium abscessus
Mycobacterium abscessus is Putative transcriptional regulator, WhiB family MAB_3726 found in
Mycobacterium abscessus
action filter_type
action find
entity Putative transcriptional regulator, WhiB family    MAB_3726
relation found in taxon
type taxon
['Putative transcriptional regulator, WhiB family    MAB_3726', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?g WHERE { resource:Putative_transcriptional_regulator,_WhiB_family____MAB_3726 property:found_in_taxon ?g . ?g rdf:type ontology:taxon }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q6946978 Q23587594
P703
Q181394
USER
Is Probable RNA polymerase sigma-D factor    MAB_3724c found in the taxon that one ?
(Q23587594,P703,Q6946978)
action is_in
entity Q6946978
action find
entity Q23587594
relation P703
['Q23587594', 'P703', 'Q6946978']
ASK WHERE { resource:Q23587594 property:P703 resource:Q6946978 }
Mycobacterium abscessus Probable RNA polymerase sigma-D factor    MAB_3724c
action is_in
entity Mycobacterium abscessus
action find
entity Probable RNA polymerase sigma-D factor    MAB_3724c
relation found in taxon
['Probable RNA polymerase sigma-D factor    MAB_3724c', 'found in taxon', 'Mycobacterium abscessus']
ASK WHERE { resource:Probable_RNA_polymerase_sigma-D_factor____MAB_3724c property:found_in_taxon resource:Mycobacterium_abscessus }
[]
nutrient
SYSTEM
YES
(Q23587594,P703,Q6946978)
action is_in
entity Q6946978
action find
entity Q23587594
relation P703
[ANSWER]
['Q23587594', 'P703', 'Q6946978']
ASK WHERE { resource:Q23587594 property:P703 resource:Q6946978 }
Yes
action is_in
entity Mycobacterium abscessus
action find
entity Probable RNA polymerase sigma-D factor    MAB_3724c
relation found in taxon
['Probable RNA polymerase sigma-D factor    MAB_3724c', 'found in taxon', 'Mycobacterium abscessus']
ASK WHERE { resource:Probable_RNA_polymerase_sigma-D_factor____MAB_3724c property:found_in_taxon resource:Mycobacterium_abscessus }
[]
Comparative Reasoning (All)
Comparative|More/Less|Single entity type
Q15554168
P566
Q82799 Q16521
USER
Which names are a basionyms of greater number of taxons than Salsola dendroides ?
(c(Q16521),P566,c(Q82799))
action greater
action find_reverse_tuple_counts
relation P566
type Q82799
type Q16521
action count
action filter_type
action find
entity Q15554168
relation P566
type Q82799
[{'concept': 'Q16521'}, 'P566', {'concept': 'Q82799'}]
SELECT DISTINCT ?m WHERE { { SELECT DISTINCT ?m ( COUNT ( ?j ) AS ?x ) WHERE { ?m rdf:type ontology:Q82799 . ?j rdf:type ontology:Q16521 . ?j property:P566 ?m } GROUP BY ?m } . FILTER ( ?x > ?s ) . { SELECT DISTINCT ( COUNT ( ?i ) AS ?s ) WHERE { ?i rdf:type ontology:Q82799 . resource:Q15554168 property:P566 ?i } } }
Salsola dendroides
action greater
action find_reverse_tuple_counts
relation basionym
type name
type taxon
action count
action filter_type
action find
entity Salsola dendroides
relation basionym
type name
[{'concept': 'taxon'}, 'basionym', {'concept': 'name'}]
SELECT DISTINCT ?m WHERE { { SELECT DISTINCT ?m ( COUNT ( ?j ) AS ?x ) WHERE { ?m rdf:type ontology:name . ?j rdf:type ontology:taxon . ?j property:basionym ?m } GROUP BY ?m } . FILTER ( ?x > ?s ) . { SELECT DISTINCT ( COUNT ( ?i ) AS ?s ) WHERE { ?i rdf:type ontology:name . resource:Salsola_dendroides property:basionym ?i } } }
[]
name taxon
Q11079289 Q17244388
SYSTEM
Salsola brachiata, Atriplex portulacoides
Q11079289 Q17244388
(c(Q16521),P566,c(Q82799))
action greater
action find_reverse_tuple_counts
relation P566
type Q82799
type Q16521
action count
action filter_type
action find
entity Q15554168
relation P566
type Q82799
[ANSWERS] are a basionyms of greater number of taxons than Salsola dendroides
[{'concept': 'Q16521'}, 'P566', {'concept': 'Q82799'}]
SELECT DISTINCT ?m WHERE { { SELECT DISTINCT ?m ( COUNT ( ?j ) AS ?x ) WHERE { ?m rdf:type ontology:Q82799 . ?j rdf:type ontology:Q16521 . ?j property:P566 ?m } GROUP BY ?m } . FILTER ( ?x > ?s ) . { SELECT DISTINCT ( COUNT ( ?i ) AS ?s ) WHERE { ?i rdf:type ontology:Q82799 . resource:Q15554168 property:P566 ?i } } }
Salsola brachiata Atriplex portulacoides
Salsola brachiata and Atriplex portulacoides are a basionyms of greater number of taxons than Salsola dendroides
Salsola brachiata Atriplex portulacoides
action greater
action find_reverse_tuple_counts
relation basionym
type name
type taxon
action count
action filter_type
action find
entity Salsola dendroides
relation basionym
type name
[{'concept': 'taxon'}, 'basionym', {'concept': 'name'}]
SELECT DISTINCT ?m WHERE { { SELECT DISTINCT ?m ( COUNT ( ?j ) AS ?x ) WHERE { ?m rdf:type ontology:name . ?j rdf:type ontology:taxon . ?j property:basionym ?m } GROUP BY ?m } . FILTER ( ?x > ?s ) . { SELECT DISTINCT ( COUNT ( ?i ) AS ?s ) WHERE { ?i rdf:type ontology:name . resource:Salsola_dendroides property:basionym ?i } } }
[]
Clarification
Comparative|More/Less|Mult. entity type|Indirect
P566
Q82799 Q16521 Q82799
USER
Which names are a basionyms of around the same number of taxons and names as that name ?
(c(Q16521)|c(Q82799),P566,c(Q82799))
[[{'concept': 'Q16521'}, {'concept': 'Q82799'}], 'P566', {'concept': 'Q82799'}]
SELECT DISTINCT ?y WHERE { { { ?z property:Q810198 ?y } UNION { ?y property:Q810198 ?y } } . ?z rdf:type ontology:Q16521 . ?y rdf:type ontology:Q82799 }
[[{'concept': 'taxon'}, {'concept': 'name'}], 'basionym', {'concept': 'name'}]
SELECT DISTINCT ?y WHERE { { { ?z property:basionym ?y } UNION { ?y property:basionym ?y } } . ?z rdf:type ontology:taxon . ?y rdf:type ontology:name }
[]
name taxon name
Comparative|More/Less|Mult. entity type|Clarification
Q17244388
SYSTEM
Did you mean Atriplex portulacoides ?
(c(Q16521)|c(Q82799),P566,c(Q82799))
[ANSWER]
[[{'concept': 'Q16521'}, {'concept': 'Q82799'}], 'P566', {'concept': 'Q82799'}]
SELECT DISTINCT ?y WHERE { { { ?z property:Q810198 ?y } UNION { ?y property:Q810198 ?y } } . ?z rdf:type ontology:Q16521 . ?y rdf:type ontology:Q82799 }
Did you mean Atriplex portulacoides ?
Atriplex portulacoides
[[{'concept': 'taxon'}, {'concept': 'name'}], 'basionym', {'concept': 'name'}]
SELECT DISTINCT ?y WHERE { { { ?z property:basionym ?y } UNION { ?y property:basionym ?y } } . ?z rdf:type ontology:taxon . ?y rdf:type ontology:name }
[]
Comparative Reasoning (All)
USER
No, I meant Salsola brachiata. Could you tell me the answer for that?
(c(Q16521)|c(Q82799),P566,c(Q82799))
Q11079289
[[{'concept': 'Q16521'}, {'concept': 'Q82799'}], 'P566', {'concept': 'Q82799'}]
[[{'concept': 'taxon'}, {'concept': 'name'}], 'basionym', {'concept': 'name'}]
[]
Q17243481 Q23455986 Q23764842
SYSTEM
Rhagodia hastata, Hyacinthus nanus, Apicra rubriflora
Q17243481 Q23455986 Q23764842 Q19849746 Q22665879 Q11079289 Q23764973 Q24056509 Q2110890 Q10898709 Q10891753 Q21876720 Q8964445 Q21876734 Q21877025 Q134609 Q10906008 Q17244388 Q21872305 Q24006173
(c(Q16521)|c(Q82799),P566,c(Q82799))
[ANSWERS] are a basionyms of around the same number of taxons and names as that name
[[{'concept': 'Q16521'}, {'concept': 'Q82799'}], 'P566', {'concept': 'Q82799'}]
SELECT DISTINCT ?y WHERE { { { ?z property:Q810198 ?y } UNION { ?y property:Q810198 ?y } } . ?z rdf:type ontology:Q16521 . ?y rdf:type ontology:Q82799 }
Rhagodia hastata Hyacinthus nanus Apicra rubriflora Kochia californica Polygonum alpinum Salsola brachiata Polyporus pes-caprae Agaricus inquilinus Polygonum sagittatum Chenopodium aristatum Kochia krylovii Polygonum arifolium Gnaphalium luteoalbum Polygonum articulatum Polygonum viviparum Cynara scolymus Serratula chinensis Atriplex portulacoides Chenopodium hirsutum Convolvulus corymbosus
Rhagodia hastata, Hyacinthus nanus and Apicra rubriflora are a basionyms of around the same number of taxons and names as that name
Rhagodia hastata Hyacinthus nanus Apicra rubriflora
[[{'concept': 'taxon'}, {'concept': 'name'}], 'basionym', {'concept': 'name'}]
SELECT DISTINCT ?y WHERE { { { ?z property:basionym ?y } UNION { ?y property:basionym ?y } } . ?z rdf:type ontology:taxon . ?y rdf:type ontology:name }
[]