Simple Question (Direct)
Simple Question
Q21986842
P702
Q863908
USER
Which nucleic acid sequence encodes SPARC-related modular calcium-binding protein 2 ?
(Q21986842,P702,c(Q863908))
action filter_type
action find
entity Q21986842
relation P702
type Q863908
['Q21986842', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?b WHERE { resource:Q21986842 property:P702 ?b . ?b rdf:type ontology:Q863908 }
SPARC-related modular calcium-binding protein 2
action filter_type
action find
entity SPARC-related modular calcium-binding protein 2
relation encoded by
type nucleic acid sequence
['SPARC-related modular calcium-binding protein 2', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?b WHERE { resource:SPARC-related_modular_calcium-binding_protein_2 property:encoded_by ?b . ?b rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18261396
SYSTEM
Smoc2
Q18261396
(Q21986842,P702,c(Q863908))
action filter_type
action find
entity Q21986842
relation P702
type Q863908
[ANSWER] encodes SPARC-related modular calcium-binding protein 2
['Q21986842', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?b WHERE { resource:Q21986842 property:P702 ?b . ?b rdf:type ontology:Q863908 }
Smoc2
Smoc2 encodes SPARC-related modular calcium-binding protein 2
Smoc2
action filter_type
action find
entity SPARC-related modular calcium-binding protein 2
relation encoded by
type nucleic acid sequence
['SPARC-related modular calcium-binding protein 2', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?b WHERE { resource:SPARC-related_modular_calcium-binding_protein_2 property:encoded_by ?b . ?b rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18261396
P684
Q863908
USER
Which is the species that has that one as its orthologous gene ?
(c(Q863908),P684,Q18261396)
action filter_type
action find
entity Q18261396
relation P684
type Q863908
[{'concept': 'Q863908'}, 'P684', 'Q18261396']
SELECT DISTINCT ?p WHERE { resource:Q18261396 property:P684 ?p . ?p rdf:type ontology:Q863908 }
Smoc2
action filter_type
action find
entity Smoc2
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'Smoc2']
SELECT DISTINCT ?p WHERE { resource:Smoc2 property:ortholog ?p . ?p rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18045557
SYSTEM
SMOC2
Q18045557
(c(Q863908),P684,Q18261396)
action filter_type
action find
entity Q18261396
relation P684
type Q863908
[ANSWER] is the species that has that one as its orthologous gene
[{'concept': 'Q863908'}, 'P684', 'Q18261396']
SELECT DISTINCT ?p WHERE { resource:Q18261396 property:P684 ?p . ?p rdf:type ontology:Q863908 }
SMOC2
SMOC2 is the species that has that one as its orthologous gene
SMOC2
action filter_type
action find
entity Smoc2
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'Smoc2']
SELECT DISTINCT ?p WHERE { resource:Smoc2 property:ortholog ?p . ?p rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q18056385
P703
Q16521
USER
Where is ILDR2 found ?
(Q18056385,P703,c(Q16521))
action filter_type
action find
entity Q18056385
relation P703
type Q16521
['Q18056385', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?j WHERE { resource:Q18056385 property:P703 ?j . ?j rdf:type ontology:Q16521 }
ILDR2
action filter_type
action find
entity ILDR2
relation found in taxon
type taxon
['ILDR2', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?j WHERE { resource:ILDR2 property:found_in_taxon ?j . ?j rdf:type ontology:taxon }
[]
taxon
Q15978631
SYSTEM
Homo sapiens
Q15978631
(Q18056385,P703,c(Q16521))
action filter_type
action find
entity Q18056385
relation P703
type Q16521
ILDR2 is found in [ANSWER]
['Q18056385', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?j WHERE { resource:Q18056385 property:P703 ?j . ?j rdf:type ontology:Q16521 }
Homo sapiens
ILDR2 is found in Homo sapiens
Homo sapiens
action filter_type
action find
entity ILDR2
relation found in taxon
type taxon
['ILDR2', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?j WHERE { resource:ILDR2 property:found_in_taxon ?j . ?j rdf:type ontology:taxon }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18056385
P688
Q181394
USER
Which nutrient is that nucleic acid sequence an encoding of ?
(Q15978631,P688,c(Q181394))
action filter_type
action find
entity Q18056385
relation P688
type Q181394
['Q15978631', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?x WHERE { resource:Q18056385 property:P688 ?x . ?x rdf:type ontology:Q181394 }
ILDR2
action filter_type
action find
entity ILDR2
relation encodes
type nutrient
['Homo sapiens', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?x WHERE { resource:ILDR2 property:encodes ?x . ?x rdf:type ontology:nutrient }
[]
nutrient
Q21116072
SYSTEM
Immunoglobulin-like domain-containing receptor 2
Q21116072
(Q15978631,P688,c(Q181394))
action filter_type
action find
entity Q18056385
relation P688
type Q181394
The [ANSWER] is that nucleic acid sequence an encoding of
['Q15978631', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?x WHERE { resource:Q18056385 property:P688 ?x . ?x rdf:type ontology:Q181394 }
Immunoglobulin-like domain-containing receptor 2
The Immunoglobulin-like domain-containing receptor 2 is that nucleic acid sequence an encoding of
Immunoglobulin-like domain-containing receptor 2
action filter_type
action find
entity ILDR2
relation encodes
type nutrient
['Homo sapiens', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?x WHERE { resource:ILDR2 property:encodes ?x . ?x rdf:type ontology:nutrient }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q18052179
P2293
Q2057971
USER
Which health problem is genetically linked with CCDC13 ?
(c(Q2057971),P2293,Q18052179)
action filter_type
action find
entity Q18052179
relation P2293
type Q2057971
[{'concept': 'Q2057971'}, 'P2293', 'Q18052179']
SELECT DISTINCT ?k WHERE { ?k rdf:type ontology:Q2057971 . resource:Q18052179 property:P2293 ?k }
CCDC13
action filter_type
action find
entity CCDC13
relation genetic association
type health problem
[{'concept': 'health problem'}, 'genetic association', 'CCDC13']
SELECT DISTINCT ?k WHERE { ?k rdf:type ontology:health_problem . resource:CCDC13 property:genetic_association ?k }
[]
health problem
Q520127
SYSTEM
periodontitis
Q520127
(c(Q2057971),P2293,Q18052179)
action filter_type
action find
entity Q18052179
relation P2293
type Q2057971
In [ANSWER] is genetically linked with CCDC13
[{'concept': 'Q2057971'}, 'P2293', 'Q18052179']
SELECT DISTINCT ?k WHERE { ?k rdf:type ontology:Q2057971 . resource:Q18052179 property:P2293 ?k }
periodontitis
In periodontitis is genetically linked with CCDC13
periodontitis
action filter_type
action find
entity CCDC13
relation genetic association
type health problem
[{'concept': 'health problem'}, 'genetic association', 'CCDC13']
SELECT DISTINCT ?k WHERE { ?k rdf:type ontology:health_problem . resource:CCDC13 property:genetic_association ?k }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q520127
P2175
Q8386
USER
Which drug is used to cure that health problem ?
(c(Q8386),P2175,Q520127)
action filter_type
action find_reverse
entity Q520127
relation P2175
type Q8386
[{'concept': 'Q8386'}, 'P2175', 'Q520127']
SELECT DISTINCT ?m WHERE { ?m property:P2175 resource:Q520127 . ?m rdf:type ontology:Q8386 }
periodontitis
action filter_type
action find_reverse
entity periodontitis
relation medical condition treated
type drug
[{'concept': 'drug'}, 'medical condition treated', 'periodontitis']
SELECT DISTINCT ?m WHERE { ?m property:medical_condition_treated resource:periodontitis . ?m rdf:type ontology:drug }
[]
drug
Q419890
SYSTEM
flurbiprofen
Q419890
(c(Q8386),P2175,Q520127)
action filter_type
action find_reverse
entity Q520127
relation P2175
type Q8386
[ANSWER] is used to cure that health problem
[{'concept': 'Q8386'}, 'P2175', 'Q520127']
SELECT DISTINCT ?m WHERE { ?m property:P2175 resource:Q520127 . ?m rdf:type ontology:Q8386 }
flurbiprofen
Flurbiprofen is used to cure that health problem
flurbiprofen
action filter_type
action find_reverse
entity periodontitis
relation medical condition treated
type drug
[{'concept': 'drug'}, 'medical condition treated', 'periodontitis']
SELECT DISTINCT ?m WHERE { ?m property:medical_condition_treated resource:periodontitis . ?m rdf:type ontology:drug }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21116072
P681
Q5058355
USER
Which are the cell components of Immunoglobulin-like domain-containing receptor 2 ?
(Q21116072,P681,c(Q5058355))
action filter_type
action find
entity Q21116072
relation P681
type Q5058355
['Q21116072', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?v WHERE { resource:Q21116072 property:P681 ?v . ?v rdf:type ontology:Q5058355 }
Immunoglobulin-like domain-containing receptor 2
action filter_type
action find
entity Immunoglobulin-like domain-containing receptor 2
relation cell component
type cellular component
['Immunoglobulin-like domain-containing receptor 2', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?v WHERE { resource:Immunoglobulin-like_domain-containing_receptor_2 property:cell_component ?v . ?v rdf:type ontology:cellular_component }
[]
cellular component
Q79927 Q14329032
SYSTEM
endoplasmic reticulum, endoplasmic reticulum membrane
Q79927 Q14329032
(Q21116072,P681,c(Q5058355))
action filter_type
action find
entity Q21116072
relation P681
type Q5058355
The cell components of Immunoglobulin-like domain-containing receptor 2 are in [ANSWERS]
['Q21116072', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?v WHERE { resource:Q21116072 property:P681 ?v . ?v rdf:type ontology:Q5058355 }
endoplasmic reticulum endoplasmic reticulum membrane
The cell components of Immunoglobulin-like domain-containing receptor 2 are in endoplasmic reticulum and endoplasmic reticulum membrane
endoplasmic reticulum endoplasmic reticulum membrane
action filter_type
action find
entity Immunoglobulin-like domain-containing receptor 2
relation cell component
type cellular component
['Immunoglobulin-like domain-containing receptor 2', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?v WHERE { resource:Immunoglobulin-like_domain-containing_receptor_2 property:cell_component ?v . ?v rdf:type ontology:cellular_component }
[]
Simple Question (Ellipsis)
Incomplete|object parent is changed, subject and predicate remain same
Q21116072
Q15989253
USER
And which part?
(Q21116072,P681,c(Q15989253))
action filter_type
action find
entity Q21116072
relation P681
type Q15989253
['Q21116072', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?w WHERE { resource:Q21116072 property:P681 ?w . ?w rdf:type ontology:Q15989253 }
Immunoglobulin-like domain-containing receptor 2
action filter_type
action find
entity Immunoglobulin-like domain-containing receptor 2
relation cell component
type part
['Immunoglobulin-like domain-containing receptor 2', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?w WHERE { resource:Immunoglobulin-like_domain-containing_receptor_2 property:cell_component ?w . ?w rdf:type ontology:part }
[]
part
Q14349455
SYSTEM
membrane
Q14349455
(Q21116072,P681,c(Q15989253))
action filter_type
action find
entity Q21116072
relation P681
type Q15989253
[ANSWER]
['Q21116072', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?w WHERE { resource:Q21116072 property:P681 ?w . ?w rdf:type ontology:Q15989253 }
membrane
membrane
action filter_type
action find
entity Immunoglobulin-like domain-containing receptor 2
relation cell component
type part
['Immunoglobulin-like domain-containing receptor 2', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?w WHERE { resource:Immunoglobulin-like_domain-containing_receptor_2 property:cell_component ?w . ?w rdf:type ontology:part }
[]
Logical Reasoning (All)
Logical|Intersection|Multiple_Relation
Q14860365 Q79927
P680 P681
Q181394
USER
Which nutrients are endoplasmic reticulum a cell component of and have the molecular function nucleotide binding ?
AND((c(Q181394),P681,Q79927), (c(Q181394),P680,Q14860365))
action filter_type
action intersection
action find_reverse
entity Q79927
relation P681
action find_reverse
entity Q14860365
relation P680
type Q181394
{'AND': [[{'concept': 'Q181394'}, 'P681', 'Q79927'], [{'concept': 'Q181394'}, 'P680', 'Q14860365']]}
SELECT DISTINCT ?x WHERE { ?x property:P681 resource:Q79927 . ?x property:P680 resource:Q14860365 . ?x rdf:type ontology:Q181394 }
nucleotide binding endoplasmic reticulum
action filter_type
action intersection
action find_reverse
entity endoplasmic reticulum
relation cell component
action find_reverse
entity nucleotide binding
relation molecular function
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'cell component', 'endoplasmic reticulum'], [{'concept': 'nutrient'}, 'molecular function', 'nucleotide binding']]}
SELECT DISTINCT ?x WHERE { ?x property:cell_component resource:endoplasmic_reticulum . ?x property:molecular_function resource:nucleotide_binding . ?x rdf:type ontology:nutrient }
[]
nutrient
Q21495082 Q21436193 Q21982764 Q21117866 Q21984953 Q21990182 Q27549844 Q4654263 Q27551578 Q21115427
SYSTEM
Some of them are Ephrin type-A receptor 4, Interferon-inducible GTPase 1, Sodium/potassium-transporting ATPase subunit alpha-3, GTP-binding protein SAR1b, ATP-binding cassette sub-family B member 6, mitochondrial, SRSF protein kinase 1, dynamin-like GTPase SEY1 YOR165W, Mitogen-activated protein kinase kinase kinase 5, riboflavin kinase YDR236C, Serine/threonine-protein kinase/endoribonuclease IRE1
Q21991781 Q21991780 Q21989202 Q21989972 Q21115358 Q5446457 Q21499111 Q21990557 Q21499115 Q21121622 Q21116494 Q27552640 Q21990091 Q15323770 Q21988436 Q21173891 Q21103234 Q27551578 Q21496835 Q27549525 Q409961 Q14913124 Q27553368 Q21495935 Q21172758 Q21135212 Q21985177 Q27550788 Q21986377 Q21136197 Q21121308 Q21115694 Q21433531 Q14912405 Q21986067 Q27549777 Q21097536 Q27548268 Q21113393 Q21115366 Q4654859 Q4654858 Q21106330 Q21499117 Q21985354 Q21134447 Q21097557 Q21982764 Q21154841 Q21131370 Q27548972 Q27551341 Q21985968 Q21118457 Q7671480 Q21992695 Q14905621 Q21106629 Q21495592 Q21121313 Q15329459 Q21426193 Q21136170 Q27549855 Q21130611 Q21984423 Q21496831 Q21495201 Q27551999 Q27552243 Q21135863 Q21097480 Q21496839 Q21496838 Q21992750 Q27548240 Q21115279 Q21116665 Q5009781 Q27548596 Q424401 Q21106340 Q21498996 Q21123657 Q21103047 Q21495187 Q21491045 Q21111368 Q21495585 Q21118396 Q21121458 Q21097491 Q27552388 Q21988437 Q21436193 Q27552011 Q27549736 Q21117866 Q27547524 Q14912658 Q27547480 Q21983247 Q21114159 Q14888940 Q21111895 Q21499477 Q21097472 Q587961 Q21982265 Q21121457 Q21495560 Q21983222 Q21115263 Q21115261 Q21115491 Q21115306 Q21115309 Q21110488 Q21125819 Q21982958 Q21496011 Q21172390 Q21989254 Q21988546 Q21110081 Q21109795 Q15331171 Q21990139 Q21499090 Q27548957 Q25019033 Q21173282 Q21106363 Q21097506 Q21096374 Q21986759 Q27549534 Q21137668 Q21982795 Q21990192 Q21989383 Q21117636 Q1552797 Q21991860 Q21497949 Q21987199 Q21109380 Q21123090 Q21133714 Q21495082 Q14914386 Q21118348 Q4650811 Q21980026 Q21108719 Q21991856 Q21991859 Q21116680 Q22679707 Q21105952 Q21983512 Q21097555 Q21985892 Q21107929 Q21499088 Q21986501 Q21245858 Q21989976 Q21989974 Q27548222 Q21116756 Q21121460 Q21988902 Q21102680 Q21116759 Q21097518 Q21990182 Q21990183 Q21106706 Q27552597 Q21106702 Q21497974 Q21982723 Q21109675 Q21989273 Q27552561 Q21109279 Q21118288 Q14874000 Q4650080 Q21499490 Q27551422 Q7119501 Q21981212 Q21113668 Q21499099 Q21499096 Q21981218 Q4654263 Q21496408 Q21499093 Q27551305 Q21499091 Q27548987 Q9063289 Q21494254 Q21118210 Q27548199 Q21983353 Q21127180 Q21984494 Q27551962 Q21102062 Q27550120 Q27549844 Q21984018 Q21983522 Q21984714 Q27549594 Q27548903 Q21106334 Q14876092 Q21116755 Q21113198 Q4044963 Q21112990 Q21436584 Q6720415 Q21984953 Q21981692 Q21989991 Q27550734 Q21097550 Q21121361 Q27549609 Q21112620 Q21984224 Q21105011 Q27551170 Q27550811 Q21101203 Q21985464 Q21983519 Q21115344 Q21115347 Q21112484 Q21135858 Q21421195 Q21114346 Q21990086 Q15320975 Q21108662 Q21990082 Q21989500 Q21127132 Q21121418 Q21990088 Q21983510 Q21991858 Q21981215 Q27548297 Q21119722 Q21115319 Q21109298 Q7120338 Q21989262 Q21983297 Q21985416 Q21115427 Q2308016 Q285613 Q21497918 Q21121316 Q21416533 Q21110137 Q21100360
AND((c(Q181394),P681,Q79927), (c(Q181394),P680,Q14860365))
action filter_type
action intersection
action find_reverse
entity Q79927
relation P681
action find_reverse
entity Q14860365
relation P680
type Q181394
[ANSWERS]
{'AND': [[{'concept': 'Q181394'}, 'P681', 'Q79927'], [{'concept': 'Q181394'}, 'P680', 'Q14860365']]}
SELECT DISTINCT ?x WHERE { ?x property:P681 resource:Q79927 . ?x property:P680 resource:Q14860365 . ?x rdf:type ontology:Q181394 }
Antigen peptide transporter 2 Antigen peptide transporter 1 Spastin Ras-related protein Rab-2A Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 Fibroblast growth factor receptor 3 Probable phospholipid-transporting ATPase VD GTP-binding protein Rheb Sodium/potassium-transporting ATPase subunit alpha-1 Ras-related protein Rab-32 78 kDa glucose-regulated protein guanine nucleotide exchange factor GET3 YDL100C Long-chain fatty acid transport protein 4 Transient receptor potential cation channel subfamily M member 4 Phosphatidylinositol 5-phosphate 4-kinase type-2 beta Torsin-1A Guanine nucleotide-binding protein G(z) subunit alpha riboflavin kinase YDR236C Long-chain-fatty-acid--CoA ligase 5 Rab family GTPase YPT52 YKR014C Leucine-rich repeat serine/threonine-protein kinase 2 Long-chain-fatty-acid--CoA ligase 6 tetrahydrofolate synthase YOR241W Leukocyte tyrosine kinase receptor Eukaryotic translation initiation factor 2-alpha kinase 3 Ras-related protein Rab-38 2'-5'-oligoadenylate synthase 2 aminophospholipid-translocating P4-type ATPase DNF1 YER166W Ras-related protein Rab-9A Signal recognition particle receptor subunit beta Very long-chain acyl-CoA synthetase Cytoplasmic polyadenylation element-binding protein 4 Immunity-related GTPase family M protein 1 Receptor-type tyrosine-protein kinase FLT3 Ras-related protein Rab-21 Rab family GTPase SEC4 YFL005W Phospholipid-transporting ATPase IG serine/threonine protein kinase YCK1 YHR135C Protein-cysteine N-palmitoyltransferase HHAT Phospholipid-transporting ATPase IA Phospholipid-transporting ATPase IC Copper-transporting ATPase 1 Long-chain-fatty-acid--CoA ligase 4 Manganese-transporting ATPase 13A1 Fibroblast growth factor receptor 4 NADPH oxidase 4 Probable phospholipid-transporting ATPase IF Sodium/potassium-transporting ATPase subunit alpha-3 SRSF protein kinase 1 Endoplasmin aminophospholipid-translocating P4-type ATPase DRS2 YAL026C aminophospholipid-translocating P4-type ATPase DNF3 YMR162C cGMP-dependent 3',5'-cyclic phosphodiesterase Probable ATP-dependent RNA helicase YTHDC2 Transient receptor potential cation channel subfamily M member 4 Serine/threonine-protein kinase VRK2 NACHT, LRR and PYD domains-containing protein 3 Ras-related protein Rab-2B Serine/threonine-protein kinase/endoribonuclease IRE2 Long-chain fatty acid transport protein 4 Protein kinase C delta type ATPase Asna1 Signal recognition particle receptor subunit alpha E2 ubiquitin-conjugating protein UBC6 YER100W Ectonucleoside triphosphate diphosphohydrolase 2 Dual specificity mitogen-activated protein kinase kinase 1 Long-chain-fatty-acid--CoA ligase 1 Probable ATP-dependent RNA helicase DDX41 Rho family GTPase RHO4 YKR055W Signal recognition particle receptor subunit beta YKL154W Ubiquitin-conjugating enzyme E2 J1 Probable phospholipid-transporting ATPase VB Long-chain-fatty-acid--CoA ligase 4 Long-chain-fatty-acid--CoA ligase 3 Probable ATP-dependent RNA helicase YTHDC2 acetyl-CoA carboxylase ACC1 YNR016C Long-chain-fatty-acid--CoA ligase ACSBG1 Dual specificity mitogen-activated protein kinase kinase 2 Receptor-type tyrosine-protein kinase FLT3 acetate--CoA ligase 1 YAL054C Epidermal growth factor receptor Long-chain-fatty-acid--CoA ligase 1 Ras-related protein Rab-38 Ras-related protein Rab-10 Serine/threonine-protein kinase/endoribonuclease IRE2 Stimulator of interferon genes protein Protein kinase C epsilon type Heterogeneous nuclear ribonucleoprotein Q Serine/threonine-protein kinase/endoribonuclease IRE1 Hypoxia up-regulated protein 1 Torsin-2A Sodium/potassium-transporting ATPase subunit alpha-1 Rab family GTPase YPT11 YNL304W Phosphatidylinositol 4-kinase beta Interferon-inducible GTPase 1 bifunctional endoribonuclease/protein kinase IRE1 YHR079C E2 ubiquitin-conjugating protein UBC7 YMR022W GTP-binding protein SAR1b Arf family GTPase SAR1 YPL218W Protein kinase C alpha type putative ATP-dependent permease ADP1 YCR011C Endoplasmin Probable ATP-dependent RNA helicase DDX41 Heat-stable enterotoxin receptor Interferon-induced GTP-binding protein Mx1 Transitional endoplasmic reticulum ATPase Probable phospholipid-transporting ATPase VA Tyrosine-protein kinase ABL1 Protein-cysteine N-palmitoyltransferase HHAT Torsin-1B 78 kDa glucose-regulated protein Myotonin-protein kinase ATP-binding cassette sub-family B member 9 ATP-binding cassette sub-family B member 6, mitochondrial Kinesin-like protein KIF1C Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 Phospholipid-transporting ATPase IK Serine/threonine-protein kinase BRSK2 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial EH domain-containing protein 4 Vascular endothelial growth factor receptor 2 Vascular endothelial growth factor receptor 2 Ubiquitin-conjugating enzyme E2 G2 GTP-binding protein SAR1a Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit beta 2'-5'-oligoadenylate synthase 2 Leucine-rich repeat serine/threonine-protein kinase 2 Serine/threonine-protein kinase Sgk1 Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 cyclin-dependent serine/threonine-protein kinase CDC28 YBR160W ATP-binding cassette sub-family A member 17 Heterogeneous nuclear ribonucleoprotein R Long-chain-fatty-acid--CoA ligase 5 Sodium/potassium-transporting ATPase subunit alpha-3 2'-5'-oligoadenylate synthase 1 Protein O-mannose kinase Rho family GTPase RHO1 YPR165W Fibroblast growth factor receptor 4 Serine/threonine-protein kinase BRSK2 Signal recognition particle receptor subunit alpha Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase GTP-binding protein Rheb Heat-stable enterotoxin receptor Torsin-1B Cytosolic 5'-nucleotidase 3A Large subunit GTPase 1 homolog Cytosolic 5'-nucleotidase 3A Ras-related protein Rab-9A Large subunit GTPase 1 homolog Ephrin type-A receptor 4 Mitogen-activated protein kinase kinase kinase 5 Serine/threonine-protein kinase H1 Long-chain-fatty-acid--CoA ligase 6 Interferon-induced GTP-binding protein Mx1 Heat shock 70 kDa protein 13 Torsin-2A Torsin-1A Ras-related protein R-Ras2 Argininosuccinate synthase Ras-related protein Rab-2A Phospholipid-transporting ATPase ID Probable phospholipid-transporting ATPase VD ATP-dependent (S)-NAD(P)H-hydrate dehydratase LINE-1 retrotransposable element ORF1 protein Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 Serine/threonine-protein kinase LMTK1 APOBEC1 complementation factor Ras-related protein Rab-1A Ras-related protein Rab-2B RNA-binding signal recognition particle subunit SRP54 YPR088C Atlastin-2 Torsin-3A CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial Ras-related protein Rab-21 Atlastin-1 Probable phospholipid-transporting ATPase IH SRSF protein kinase 1 Signal recognition particle receptor subunit beta Antigen peptide transporter 2 aminophospholipid-translocating P4-type ATPase DNF2 YDR093W Antigen peptide transporter 1 Long-chain-fatty-acid--CoA ligase ACSBG1 APOBEC1 complementation factor Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase Ubiquitin-conjugating enzyme E2 J1 long-chain fatty acid-CoA ligase FAA1 YOR317W Transitional endoplasmic reticulum ATPase Phosphatidylinositol 5-phosphate 4-kinase type-2 beta Tyrosine-protein kinase ABL1 Multidrug resistance-associated protein 6 E3 ubiquitin-protein ligase AMFR putative dephospho-CoA kinase YDR196C Protein kinase C alpha type Atlastin-2 ATP-binding cassette sub-family G member 1 Probable phospholipid-transporting ATPase IH Probable phospholipid-transporting ATPase VA Atlastin-3 Mitogen-activated protein kinase kinase kinase 5 GTPase IMAP family member 8 Plasma membrane calcium-transporting ATPase 2 Hsp70 family ATPase KAR2 YJL034W Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 AAA family ATPase VPS4 YPR173C Myotonin-protein kinase Cytoplasmic polyadenylation element-binding protein 4 GTPase IMAP family member 8 bile acid-transporting ATPase YBT1 YLL048C Heat shock 70 kDa protein 13 Serine/threonine-protein kinase Sgk1 Heterogeneous nuclear ribonucleoprotein Q Hsp70 family chaperone LHS1 YKL073W ATPase ASNA1 Rab family GTPase YPT1 YFL038C dynamin-like GTPase SEY1 YOR165W GTPase IMAP family member 1 Phospholipid-transporting ATPase IK Dual specificity mitogen-activated protein kinase kinase 2 ATP-binding cassette bilirubin transporter BPT1 YLL015W Ras family GTPase RSR1 YGR152C Long-chain-fatty-acid--CoA ligase 3 Serine/threonine-protein kinase mTOR Atlastin-3 Ras-related protein Rab-1A NACHT, LRR and PYD domains-containing protein 3 Stimulator of interferon genes protein 2'-5'-oligoadenylate synthase 1A Unconventional myosin-Va ATP-binding cassette sub-family B member 6, mitochondrial Epidermal growth factor receptor Ras-related protein Rab-32 sphinganine kinase LCB4 YOR171C Manganese-transporting ATPase 13A1 Bile acyl-CoA synthetase ion-transporting P-type ATPase SPF1 YEL031W Ubiquitin-conjugating enzyme E2 G2 Eukaryotic translation initiation factor 2-alpha kinase 3 cGMP-dependent 3',5'-cyclic phosphodiesterase putative tRNA 4-demethylwyosine synthase YPL207W Signal recognition particle receptor subunit alpha YDR292C Ephrin type-A receptor 4 Hypoxia up-regulated protein 1 Phospholipid-transporting ATPase IC Phospholipid-transporting ATPase ID Plasma membrane calcium-transporting ATPase 2 Phosphatidylinositol 4-kinase beta Ubiquitin-conjugating enzyme E2 J2 Fibroblast growth factor receptor 3 Serine/threonine-protein kinase VRK2 Bile acyl-CoA synthetase Unconventional myosin-Va GTPase IMAP family member 1 Very long-chain acyl-CoA synthetase GTP-binding protein SAR1b GTP-binding protein SAR1a Protein O-mannose kinase Long-chain fatty acid transport protein 1 Phospholipid-transporting ATPase IA Torsin-3A Atlastin-1 AAA family ATPase CDC48 YDL126C Phosphatidylinositol 5-phosphate 4-kinase type-2 gamma Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 Protein kinase C epsilon type Protein kinase C delta type Ubiquitin-conjugating enzyme E2 J2 Ras-related protein Rab-10 Poly(A) polymerase beta Serine/threonine-protein kinase/endoribonuclease IRE1 Spastin Serine/threonine-protein kinase mTOR Serine/threonine-protein kinase H1 Long-chain fatty acid transport protein 1 Phospholipid-transporting ATPase 11C EH domain-containing protein 4 Dual specificity mitogen-activated protein kinase kinase 1
Ephrin type-A receptor 4, Interferon-inducible GTPase 1, Sodium/potassium-transporting ATPase subunit alpha-3, GTP-binding protein SAR1b, ATP-binding cassette sub-family B member 6, mitochondrial, SRSF protein 1, dynamin-like GTPase SEY1 YOR165W, Mitogen-activated protein kinase kinase kinase 5, riboflavin kinase YDR236C and Serine/threonine-protein kinase/endoribonuclease IRE1 are endoplasmic reticulum a cell component of and have the molecular function nucleotide binding
Ephrin type-A receptor 4 Interferon-inducible GTPase 1 Sodium/potassium-transporting ATPase subunit alpha-3 GTP-binding protein SAR1b ATP-binding cassette sub-family B member 6, mitochondrial SRSF protein kinase 1 dynamin-like GTPase SEY1 YOR165W Mitogen-activated protein kinase kinase kinase 5 riboflavin kinase YDR236C Serine/threonine-protein kinase/endoribonuclease IRE1
action filter_type
action intersection
action find_reverse
entity endoplasmic reticulum
relation cell component
action find_reverse
entity nucleotide binding
relation molecular function
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'cell component', 'endoplasmic reticulum'], [{'concept': 'nutrient'}, 'molecular function', 'nucleotide binding']]}
SELECT DISTINCT ?x WHERE { ?x property:cell_component resource:endoplasmic_reticulum . ?x property:molecular_function resource:nucleotide_binding . ?x rdf:type ontology:nutrient }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type
Q21495082
P681
Q5058355
USER
How many cellular components are the cell components of Ephrin type-A receptor 4 ?
(Q21495082,P681,c(Q5058355))
action count
action filter_type
action find
entity Q21495082
relation P681
type Q5058355
['Q21495082', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ( COUNT ( ?j ) AS ?a ) WHERE { resource:Q21495082 property:P681 ?j . ?j rdf:type ontology:Q5058355 }
Ephrin type-A receptor 4
action count
action filter_type
action find
entity Ephrin type-A receptor 4
relation cell component
type cellular component
['Ephrin type-A receptor 4', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ( COUNT ( ?j ) AS ?a ) WHERE { resource:Ephrin_type-A_receptor_4 property:cell_component ?j . ?j rdf:type ontology:cellular_component }
[]
cellular component
SYSTEM
6
Q189094 Q79927 Q14353100 Q776995 Q29548 Q14864866
(Q21495082,P681,c(Q5058355))
action count
action filter_type
action find
entity Q21495082
relation P681
type Q5058355
[ANSWER]
['Q21495082', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ( COUNT ( ?j ) AS ?a ) WHERE { resource:Q21495082 property:P681 ?j . ?j rdf:type ontology:Q5058355 }
cell surface endoplasmic reticulum cell projection neuromuscular junction plasma membrane cell body
6
action count
action filter_type
action find
entity Ephrin type-A receptor 4
relation cell component
type cellular component
['Ephrin type-A receptor 4', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ( COUNT ( ?j ) AS ?a ) WHERE { resource:Ephrin_type-A_receptor_4 property:cell_component ?j . ?j rdf:type ontology:cellular_component }
[]
Quantitative Reasoning (Count) (All)
Incomplete count-based ques
Q27548087
Q5058355
USER
And how about Hkr1p YDR420W?
(Q27548087,P681,c(Q5058355))
action count
action filter_type
action find
entity Q27548087
relation P681
type Q5058355
['Q27548087', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ( COUNT ( ?f ) AS ?v ) WHERE { resource:Q27548087 property:P681 ?f . ?f rdf:type ontology:Q5058355 }
Hkr1p YDR420W
action count
action filter_type
action find
entity Hkr1p YDR420W
relation cell component
type cellular component
['Hkr1p YDR420W', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ( COUNT ( ?f ) AS ?v ) WHERE { resource:Hkr1p_YDR420W property:cell_component ?f . ?f rdf:type ontology:cellular_component }
[]
cellular component
SYSTEM
2
(Q27548087,P681,c(Q5058355))
action count
action filter_type
action find
entity Q27548087
relation P681
type Q5058355
[ANSWER]
['Q27548087', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ( COUNT ( ?f ) AS ?v ) WHERE { resource:Q27548087 property:P681 ?f . ?f rdf:type ontology:Q5058355 }
2
action count
action filter_type
action find
entity Hkr1p YDR420W
relation cell component
type cellular component
['Hkr1p YDR420W', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ( COUNT ( ?f ) AS ?v ) WHERE { resource:Hkr1p_YDR420W property:cell_component ?f . ?f rdf:type ontology:cellular_component }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q21759465 Q21115427
P702
Q863908
USER
Which nucleic acid sequences are the gene that encodes Serine/threonine-protein kinase/endoribonuclease IRE1 or ferredoxin-NADP reductase    PA3397 ?
OR((Q21115427,P702,c(Q863908)), (Q21759465,P702,c(Q863908)))
action filter_type
action union
action find
entity Q21115427
relation P702
action find
entity Q21759465
relation P702
type Q863908
{'OR': [['Q21115427', 'P702', {'concept': 'Q863908'}], ['Q21759465', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?s WHERE { { { resource:Q21115427 property:P702 ?s } UNION { resource:Q21759465 property:P702 ?s } } . ?s rdf:type ontology:Q863908 }
ferredoxin-NADP reductase    PA3397 Serine/threonine-protein kinase/endoribonuclease IRE1
action filter_type
action union
action find
entity Serine/threonine-protein kinase/endoribonuclease IRE1
relation encoded by
action find
entity ferredoxin-NADP reductase    PA3397
relation encoded by
type nucleic acid sequence
{'OR': [['Serine/threonine-protein kinase/endoribonuclease IRE1', 'encoded by', {'concept': 'nucleic acid sequence'}], ['ferredoxin-NADP reductase    PA3397', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?s WHERE { { { resource:Serine/threonine-protein_kinase/endoribonuclease_IRE1 property:encoded_by ?s } UNION { resource:ferredoxin-NADP_reductase____PA3397 property:encoded_by ?s } } . ?s rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q17917579 Q21690503
SYSTEM
ERN1, ferredoxin-NADP reductase    PA3397
Q17917579 Q21690503
OR((Q21115427,P702,c(Q863908)), (Q21759465,P702,c(Q863908)))
action filter_type
action union
action find
entity Q21115427
relation P702
action find
entity Q21759465
relation P702
type Q863908
[ANSWERS]
{'OR': [['Q21115427', 'P702', {'concept': 'Q863908'}], ['Q21759465', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?s WHERE { { { resource:Q21115427 property:P702 ?s } UNION { resource:Q21759465 property:P702 ?s } } . ?s rdf:type ontology:Q863908 }
ERN1 ferredoxin-NADP reductase    PA3397
ERN1 and ferredoxin-NADP reductase PA3397 are the gene that encodes Serine/threonine-protein kinase/endoribonuclease IRE1 or ferredoxin-NADP reductase PA3397
ERN1 ferredoxin-NADP reductase    PA3397
action filter_type
action union
action find
entity Serine/threonine-protein kinase/endoribonuclease IRE1
relation encoded by
action find
entity ferredoxin-NADP reductase    PA3397
relation encoded by
type nucleic acid sequence
{'OR': [['Serine/threonine-protein kinase/endoribonuclease IRE1', 'encoded by', {'concept': 'nucleic acid sequence'}], ['ferredoxin-NADP reductase    PA3397', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?s WHERE { { { resource:Serine/threonine-protein_kinase/endoribonuclease_IRE1 property:encoded_by ?s } UNION { resource:ferredoxin-NADP_reductase____PA3397 property:encoded_by ?s } } . ?s rdf:type ontology:nucleic_acid_sequence }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23614235 Q21495082
P702
Q863908
USER
Which nucleic acid sequences genes encode Ephrin type-A receptor 4 or dihydrodipicolinate synthase    SRU_1435 ?
OR((Q21495082,P702,c(Q863908)), (Q23614235,P702,c(Q863908)))
action filter_type
action union
action find
entity Q21495082
relation P702
action find
entity Q23614235
relation P702
type Q863908
{'OR': [['Q21495082', 'P702', {'concept': 'Q863908'}], ['Q23614235', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?e WHERE { ?e rdf:type ontology:Q863908 . { ?d property:P702 ?e . VALUES ( ?d ) { ( resource:Q21495082 ) ( resource:Q23614235 ) } } }
dihydrodipicolinate synthase    SRU_1435 Ephrin type-A receptor 4
action filter_type
action union
action find
entity Ephrin type-A receptor 4
relation encoded by
action find
entity dihydrodipicolinate synthase    SRU_1435
relation encoded by
type nucleic acid sequence
{'OR': [['Ephrin type-A receptor 4', 'encoded by', {'concept': 'nucleic acid sequence'}], ['dihydrodipicolinate synthase    SRU_1435', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?e WHERE { ?e rdf:type ontology:nucleic_acid_sequence . { ?d property:encoded_by ?e . VALUES ( ?d ) { ( resource:Ephrin_type-A_receptor_4 ) ( resource:dihydrodipicolinate_synthase____SRU_1435 ) } } }
[]
nucleic acid sequence
Q21135717 Q23389642
SYSTEM
Epha4, dihydrodipicolinate synthase    SRU_1435
Q21135717 Q23389642
OR((Q21495082,P702,c(Q863908)), (Q23614235,P702,c(Q863908)))
action filter_type
action union
action find
entity Q21495082
relation P702
action find
entity Q23614235
relation P702
type Q863908
[ANSWERS]
{'OR': [['Q21495082', 'P702', {'concept': 'Q863908'}], ['Q23614235', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?e WHERE { ?e rdf:type ontology:Q863908 . { ?d property:P702 ?e . VALUES ( ?d ) { ( resource:Q21495082 ) ( resource:Q23614235 ) } } }
Epha4 dihydrodipicolinate synthase    SRU_1435
Epha4 and dihydrodipicolinate synthase SRU 1435 encode Ephrin type-A receptor 4 or dihydrodipicolinate synthase SRU_1435
Epha4 dihydrodipicolinate synthase    SRU_1435
action filter_type
action union
action find
entity Ephrin type-A receptor 4
relation encoded by
action find
entity dihydrodipicolinate synthase    SRU_1435
relation encoded by
type nucleic acid sequence
{'OR': [['Ephrin type-A receptor 4', 'encoded by', {'concept': 'nucleic acid sequence'}], ['dihydrodipicolinate synthase    SRU_1435', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?e WHERE { ?e rdf:type ontology:nucleic_acid_sequence . { ?d property:encoded_by ?e . VALUES ( ?d ) { ( resource:Ephrin_type-A_receptor_4 ) ( resource:dihydrodipicolinate_synthase____SRU_1435 ) } } }
[]
Quantitative Reasoning (All)
Quantitative|Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P921
Q8386 Q386724 Q838948
USER
Which drugs were the main subjects in the work atleast 11 works or works of art ?
(c(Q386724)|c(Q838948),P921,c(Q8386))
action atleast
action union
action find_reverse_tuple_counts
relation P921
type Q8386
type Q386724
action find_reverse_tuple_counts
relation P921
type Q8386
type Q838948
value 11
[[{'concept': 'Q386724'}, {'concept': 'Q838948'}], 'P921', {'concept': 'Q8386'}]
SELECT DISTINCT ?y WHERE { { SELECT DISTINCT ?y ( COUNT ( ?r ) AS ?s ) WHERE { { ?r property:P921 ?y . ?y rdf:type ontology:Q8386 . ?r rdf:type ontology:Q386724 } UNION { ?r property:P921 ?y . ?r rdf:type ontology:Q838948 . ?y rdf:type ontology:Q8386 } } GROUP BY ?y } . FILTER ( ?s >= 11 ) }
action atleast
action union
action find_reverse_tuple_counts
relation main subject
type drug
type work
action find_reverse_tuple_counts
relation main subject
type drug
type work of art
value 11
[[{'concept': 'work'}, {'concept': 'work of art'}], 'main subject', {'concept': 'drug'}]
SELECT DISTINCT ?y WHERE { { SELECT DISTINCT ?y ( COUNT ( ?r ) AS ?s ) WHERE { { ?r property:main_subject ?y . ?y rdf:type ontology:drug . ?r rdf:type ontology:work } UNION { ?r property:main_subject ?y . ?r rdf:type ontology:work_of_art . ?y rdf:type ontology:drug } } GROUP BY ?y } . FILTER ( ?s >= 11 ) }
[]
drug work work of art
Q207843 Q753 Q153
SYSTEM
Nitric Oxide, copper, ethanol
Q60168 Q905750 Q153 Q1997 Q663 Q130336 Q753 Q32921 Q758 Q207843
(c(Q386724)|c(Q838948),P921,c(Q8386))
action atleast
action union
action find_reverse_tuple_counts
relation P921
type Q8386
type Q386724
action find_reverse_tuple_counts
relation P921
type Q8386
type Q838948
value 11
[ANSWERS] were the main subjects in the work atleast 11 works or works of art
[[{'concept': 'Q386724'}, {'concept': 'Q838948'}], 'P921', {'concept': 'Q8386'}]
SELECT DISTINCT ?y WHERE { { SELECT DISTINCT ?y ( COUNT ( ?r ) AS ?s ) WHERE { { ?r property:P921 ?y . ?y rdf:type ontology:Q8386 . ?r rdf:type ontology:Q386724 } UNION { ?r property:P921 ?y . ?r rdf:type ontology:Q838948 . ?y rdf:type ontology:Q8386 } } GROUP BY ?y } . FILTER ( ?s >= 11 ) }
diamorphine Nitrous oxide ethanol Carbon dioxide aluminium Phenol copper halothane zinc Nitric Oxide
Nitric Oxide, copper and ethanol were the main subjects in the work atleast 11 works or works of art
Nitric Oxide copper ethanol
action atleast
action union
action find_reverse_tuple_counts
relation main subject
type drug
type work
action find_reverse_tuple_counts
relation main subject
type drug
type work of art
value 11
[[{'concept': 'work'}, {'concept': 'work of art'}], 'main subject', {'concept': 'drug'}]
SELECT DISTINCT ?y WHERE { { SELECT DISTINCT ?y ( COUNT ( ?r ) AS ?s ) WHERE { { ?r property:main_subject ?y . ?y rdf:type ontology:drug . ?r rdf:type ontology:work } UNION { ?r property:main_subject ?y . ?r rdf:type ontology:work_of_art . ?y rdf:type ontology:drug } } GROUP BY ?y } . FILTER ( ?s >= 11 ) }
[]