Simple Question (Direct)
Simple Question
Q27739806
P702
Q863908
USER
What is the gene that encodes replicative DNA helicase    ML2680 ?
(Q27739806,P702,c(Q863908))
action filter_type
action find
entity Q27739806
relation P702
type Q863908
['Q27739806', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?q WHERE { ?q rdf:type ontology:Q863908 . resource:Q27739806 property:P702 ?q }
replicative DNA helicase    ML2680
action filter_type
action find
entity replicative DNA helicase    ML2680
relation encoded by
type nucleic acid sequence
['replicative DNA helicase    ML2680', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?q WHERE { ?q rdf:type ontology:nucleic_acid_sequence . resource:replicative_DNA_helicase____ML2680 property:encoded_by ?q }
[]
nucleic acid sequence
Q23262488
SYSTEM
replicative DNA helicase    ML2680
Q23262488
(Q27739806,P702,c(Q863908))
action filter_type
action find
entity Q27739806
relation P702
type Q863908
The gene that encodes replicative DNA helicase ML2680 is codes replicative DNA helicase ML2680
['Q27739806', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?q WHERE { ?q rdf:type ontology:Q863908 . resource:Q27739806 property:P702 ?q }
replicative DNA helicase    ML2680
The gene that encodes replicative DNA helicase ML2680 is codes replicative DNA helicase ML2680
replicative DNA helicase    ML2680
action filter_type
action find
entity replicative DNA helicase    ML2680
relation encoded by
type nucleic acid sequence
['replicative DNA helicase    ML2680', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?q WHERE { ?q rdf:type ontology:nucleic_acid_sequence . resource:replicative_DNA_helicase____ML2680 property:encoded_by ?q }
[]
Logical Reasoning (All)
Logical|Intersection|Single_Relation
Q27740961 Q23262488
P703
Q631147
USER
Which infraspecific names are replicative DNA helicase    ML2680 and hypothetical protein    ML1796 a part of ?
AND((Q23262488,P703,c(Q631147)), (Q27740961,P703,c(Q631147)))
action filter_type
action intersection
action find
entity Q23262488
relation P703
action find
entity Q27740961
relation P703
type Q631147
{'AND': [['Q23262488', 'P703', {'concept': 'Q631147'}], ['Q27740961', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?c WHERE { resource:Q23262488 property:P703 ?c . resource:Q27740961 property:P703 ?c . ?c rdf:type ontology:Q631147 }
hypothetical protein    ML1796 replicative DNA helicase    ML2680
action filter_type
action intersection
action find
entity replicative DNA helicase    ML2680
relation found in taxon
action find
entity hypothetical protein    ML1796
relation found in taxon
type infraspecific name
{'AND': [['replicative DNA helicase    ML2680', 'found in taxon', {'concept': 'infraspecific name'}], ['hypothetical protein    ML1796', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?c WHERE { resource:replicative_DNA_helicase____ML2680 property:found_in_taxon ?c . resource:hypothetical_protein____ML1796 property:found_in_taxon ?c . ?c rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102985
SYSTEM
Mycobacterium leprae TN
Q21102985
AND((Q23262488,P703,c(Q631147)), (Q27740961,P703,c(Q631147)))
action filter_type
action intersection
action find
entity Q23262488
relation P703
action find
entity Q27740961
relation P703
type Q631147
[ANSWER] is replicative DNA helicase ML2680 and hypothetical protein ML1796 a part of
{'AND': [['Q23262488', 'P703', {'concept': 'Q631147'}], ['Q27740961', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?c WHERE { resource:Q23262488 property:P703 ?c . resource:Q27740961 property:P703 ?c . ?c rdf:type ontology:Q631147 }
Mycobacterium leprae TN
Mycobacterium leprae TN is replicative DNA helicase ML2680 and hypothetical protein ML1796 a part of
Mycobacterium leprae TN
action filter_type
action intersection
action find
entity replicative DNA helicase    ML2680
relation found in taxon
action find
entity hypothetical protein    ML1796
relation found in taxon
type infraspecific name
{'AND': [['replicative DNA helicase    ML2680', 'found in taxon', {'concept': 'infraspecific name'}], ['hypothetical protein    ML1796', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?c WHERE { resource:replicative_DNA_helicase____ML2680 property:found_in_taxon ?c . resource:hypothetical_protein____ML1796 property:found_in_taxon ?c . ?c rdf:type ontology:infraspecific_name }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q21102985 Q23437990
P703
Q181394
USER
Is NAD(P) transhydrogenase subunit alpha    VF_A0586 found in the taxon that infraspecific name ?
(Q23437990,P703,Q21102985)
action is_in
entity Q23437990
action find
entity Q21102985
relation P703
['Q23437990', 'P703', 'Q21102985']
ASK WHERE { resource:Q21102985 property:P703 resource:Q23437990 }
Mycobacterium leprae TN NAD(P) transhydrogenase subunit alpha    VF_A0586
action is_in
entity NAD(P) transhydrogenase subunit alpha    VF_A0586
action find
entity Mycobacterium leprae TN
relation found in taxon
['NAD(P) transhydrogenase subunit alpha    VF_A0586', 'found in taxon', 'Mycobacterium leprae TN']
ASK WHERE { resource:Mycobacterium_leprae_TN property:found_in_taxon resource:NAD(P)_transhydrogenase_subunit_alpha____VF_A0586 }
[]
nutrient
SYSTEM
NO
(Q23437990,P703,Q21102985)
action is_in
entity Q23437990
action find
entity Q21102985
relation P703
[ANSWER]
['Q23437990', 'P703', 'Q21102985']
ASK WHERE { resource:Q21102985 property:P703 resource:Q23437990 }
No
action is_in
entity NAD(P) transhydrogenase subunit alpha    VF_A0586
action find
entity Mycobacterium leprae TN
relation found in taxon
['NAD(P) transhydrogenase subunit alpha    VF_A0586', 'found in taxon', 'Mycobacterium leprae TN']
ASK WHERE { resource:Mycobacterium_leprae_TN property:found_in_taxon resource:NAD(P)_transhydrogenase_subunit_alpha____VF_A0586 }
[]
Verification (Boolean) (All)
Verification|3 entities, all direct, 2 are query entities
Q27739806 Q21102925 Q21102985
P703
Q631147
USER
Is replicative DNA helicase    ML2680 a part of the taxon Bordetella pertussis Tohama I and Mycobacterium leprae TN ?
(Q27739806,P703,Q21102925) (Q27739806,P703,Q21102985)
action is_in
entity Q27739806
action intersection
action find_reverse
entity Q21102925
relation P703
action find_reverse
entity Q21102985
relation P703
['Q27739806', 'P703', 'Q21102925'] ['Q27739806', 'P703', 'Q21102985']
ASK WHERE { resource:Q27739806 property:P703 resource:Q21102985 . resource:Q27739806 property:P703 resource:Q21102925 }
replicative DNA helicase    ML2680 Bordetella pertussis Tohama I Mycobacterium leprae TN
action is_in
entity replicative DNA helicase    ML2680
action intersection
action find_reverse
entity Bordetella pertussis Tohama I
relation found in taxon
action find_reverse
entity Mycobacterium leprae TN
relation found in taxon
['replicative DNA helicase    ML2680', 'found in taxon', 'Bordetella pertussis Tohama I'] ['replicative DNA helicase    ML2680', 'found in taxon', 'Mycobacterium leprae TN']
ASK WHERE { resource:replicative_DNA_helicase____ML2680 property:found_in_taxon resource:Mycobacterium_leprae_TN . resource:replicative_DNA_helicase____ML2680 property:found_in_taxon resource:Bordetella_pertussis_Tohama_I }
[]
infraspecific name
SYSTEM
NO and YES respectively
(Q27739806,P703,Q21102925) (Q27739806,P703,Q21102985)
action is_in
entity Q27739806
action intersection
action find_reverse
entity Q21102925
relation P703
action find_reverse
entity Q21102985
relation P703
[ANSWER]
['Q27739806', 'P703', 'Q21102925'] ['Q27739806', 'P703', 'Q21102985']
ASK WHERE { resource:Q27739806 property:P703 resource:Q21102985 . resource:Q27739806 property:P703 resource:Q21102925 }
NO and YES respectively
action is_in
entity replicative DNA helicase    ML2680
action intersection
action find_reverse
entity Bordetella pertussis Tohama I
relation found in taxon
action find_reverse
entity Mycobacterium leprae TN
relation found in taxon
['replicative DNA helicase    ML2680', 'found in taxon', 'Bordetella pertussis Tohama I'] ['replicative DNA helicase    ML2680', 'found in taxon', 'Mycobacterium leprae TN']
ASK WHERE { resource:replicative_DNA_helicase____ML2680 property:found_in_taxon resource:Mycobacterium_leprae_TN . resource:replicative_DNA_helicase____ML2680 property:found_in_taxon resource:Bordetella_pertussis_Tohama_I }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23445314 Q27739806
P703
Q631147
USER
Which infraspecific names are the taxon to which replicative DNA helicase    ML2680 or ATP-dependent protease peptidase subunit    HI0496 belongs to ?
OR((Q27739806,P703,c(Q631147)), (Q23445314,P703,c(Q631147)))
action filter_type
action union
action find
entity Q27739806
relation P703
action find
entity Q23445314
relation P703
type Q631147
{'OR': [['Q27739806', 'P703', {'concept': 'Q631147'}], ['Q23445314', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?o WHERE { { { resource:Q23445314 property:P703 ?o } UNION { resource:Q27739806 property:P703 ?o } } . ?o rdf:type ontology:Q631147 }
ATP-dependent protease peptidase subunit    HI0496 replicative DNA helicase    ML2680
action filter_type
action union
action find
entity replicative DNA helicase    ML2680
relation found in taxon
action find
entity ATP-dependent protease peptidase subunit    HI0496
relation found in taxon
type infraspecific name
{'OR': [['replicative DNA helicase    ML2680', 'found in taxon', {'concept': 'infraspecific name'}], ['ATP-dependent protease peptidase subunit    HI0496', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?o WHERE { { { resource:ATP-dependent_protease_peptidase_subunit____HI0496 property:found_in_taxon ?o } UNION { resource:replicative_DNA_helicase____ML2680 property:found_in_taxon ?o } } . ?o rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102985 Q21102948
SYSTEM
Mycobacterium leprae TN, Haemophilus influenzae Rd KW20
Q21102985 Q21102948
OR((Q27739806,P703,c(Q631147)), (Q23445314,P703,c(Q631147)))
action filter_type
action union
action find
entity Q27739806
relation P703
action find
entity Q23445314
relation P703
type Q631147
[ANSWERS] are the taxon to which replicative DNA helicase ML2680 or ATP-dependent protease peptidase subunit HI0496 belongs to
{'OR': [['Q27739806', 'P703', {'concept': 'Q631147'}], ['Q23445314', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?o WHERE { { { resource:Q23445314 property:P703 ?o } UNION { resource:Q27739806 property:P703 ?o } } . ?o rdf:type ontology:Q631147 }
Mycobacterium leprae TN Haemophilus influenzae Rd KW20
Mycobacterium leprae TN and Haemophilus influenzae Rd KW20 are the taxon to which replicative DNA helicase ML2680 or ATP-dependent protease peptidase subunit HI0496 belongs to
Mycobacterium leprae TN Haemophilus influenzae Rd KW20
action filter_type
action union
action find
entity replicative DNA helicase    ML2680
relation found in taxon
action find
entity ATP-dependent protease peptidase subunit    HI0496
relation found in taxon
type infraspecific name
{'OR': [['replicative DNA helicase    ML2680', 'found in taxon', {'concept': 'infraspecific name'}], ['ATP-dependent protease peptidase subunit    HI0496', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?o WHERE { { { resource:ATP-dependent_protease_peptidase_subunit____HI0496 property:found_in_taxon ?o } UNION { resource:replicative_DNA_helicase____ML2680 property:found_in_taxon ?o } } . ?o rdf:type ontology:infraspecific_name }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23445314
P682
Q3249551
USER
What is the process that ATP-dependent protease peptidase subunit    HI0496 is involved in ?
(Q21102985,P682,c(Q3249551)) (Q21102948,P682,c(Q3249551))
action filter_type
action find
entity Q23445314
relation P682
type Q3249551
['Q21102985', 'P682', {'concept': 'Q3249551'}] ['Q21102948', 'P682', {'concept': 'Q3249551'}]
SELECT DISTINCT ?l WHERE { resource:Q23445314 property:P682 ?l . ?l rdf:type ontology:Q3249551 }
ATP-dependent protease peptidase subunit    HI0496
action filter_type
action find
entity ATP-dependent protease peptidase subunit    HI0496
relation biological process
type process
['Mycobacterium leprae TN', 'biological process', {'concept': 'process'}] ['Haemophilus influenzae Rd KW20', 'biological process', {'concept': 'process'}]
SELECT DISTINCT ?l WHERE { resource:ATP-dependent_protease_peptidase_subunit____HI0496 property:biological_process ?l . ?l rdf:type ontology:process }
[]
process
Q1057
SYSTEM
metabolic process
Q1057
(Q21102985,P682,c(Q3249551)) (Q21102948,P682,c(Q3249551))
action filter_type
action find
entity Q23445314
relation P682
type Q3249551
The process that ATP-dependent protease peptidase subunit HI0496 is involved in is a [ANSWER]
['Q21102985', 'P682', {'concept': 'Q3249551'}] ['Q21102948', 'P682', {'concept': 'Q3249551'}]
SELECT DISTINCT ?l WHERE { resource:Q23445314 property:P682 ?l . ?l rdf:type ontology:Q3249551 }
metabolic process
The process that ATP-dependent protease peptidase subunit HI0496 is involved in is a metabolic process
metabolic process
action filter_type
action find
entity ATP-dependent protease peptidase subunit    HI0496
relation biological process
type process
['Mycobacterium leprae TN', 'biological process', {'concept': 'process'}] ['Haemophilus influenzae Rd KW20', 'biological process', {'concept': 'process'}]
SELECT DISTINCT ?l WHERE { resource:ATP-dependent_protease_peptidase_subunit____HI0496 property:biological_process ?l . ?l rdf:type ontology:process }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23445314
P680
Q44424
USER
What represents the molecular function of that nutrient ?
(Q1057,P680,c(Q44424))
action filter_type
action find
entity Q23445314
relation P680
type Q44424
['Q1057', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?x WHERE { resource:Q23445314 property:P680 ?x . ?x rdf:type ontology:Q44424 }
ATP-dependent protease peptidase subunit    HI0496
action filter_type
action find
entity ATP-dependent protease peptidase subunit    HI0496
relation molecular function
type chemical bond
['metabolic process', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?x WHERE { resource:ATP-dependent_protease_peptidase_subunit____HI0496 property:molecular_function ?x . ?x rdf:type ontology:chemical_bond }
[]
chemical bond
Q13667380
SYSTEM
metal ion binding
Q13667380
(Q1057,P680,c(Q44424))
action filter_type
action find
entity Q23445314
relation P680
type Q44424
The [ANSWER] represents the molecular function of that nutrient
['Q1057', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?x WHERE { resource:Q23445314 property:P680 ?x . ?x rdf:type ontology:Q44424 }
metal ion binding
The metal ion binding represents the molecular function of that nutrient
metal ion binding
action filter_type
action find
entity ATP-dependent protease peptidase subunit    HI0496
relation molecular function
type chemical bond
['metabolic process', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?x WHERE { resource:ATP-dependent_protease_peptidase_subunit____HI0496 property:molecular_function ?x . ?x rdf:type ontology:chemical_bond }
[]