Simple Question (Direct)
Simple Question
Q24148673
P703
Q631147
USER
Which taxon does 4-aminobutyrate aminotransferase    ECUMN_2986 belong to ?
(Q24148673,P703,c(Q631147))
action filter_type
action find
entity Q24148673
relation P703
type Q631147
['Q24148673', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?q WHERE { resource:Q24148673 property:P703 ?q . ?q rdf:type ontology:Q631147 }
4-aminobutyrate aminotransferase    ECUMN_2986
action filter_type
action find
entity 4-aminobutyrate aminotransferase    ECUMN_2986
relation found in taxon
type infraspecific name
['4-aminobutyrate aminotransferase    ECUMN_2986', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?q WHERE { resource:4-aminobutyrate_aminotransferase____ECUMN_2986 property:found_in_taxon ?q . ?q rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102931
SYSTEM
Escherichia coli UMN026
Q21102931
(Q24148673,P703,c(Q631147))
action filter_type
action find
entity Q24148673
relation P703
type Q631147
[ANSWER] 4-aminobutyrate aminotransferase ECUMN_2986 belongs to
['Q24148673', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?q WHERE { resource:Q24148673 property:P703 ?q . ?q rdf:type ontology:Q631147 }
Escherichia coli UMN026
Escherichia coli UMN026 4-aminobutyrate aminotransferase ECUMN_2986 belongs to
Escherichia coli UMN026
action filter_type
action find
entity 4-aminobutyrate aminotransferase    ECUMN_2986
relation found in taxon
type infraspecific name
['4-aminobutyrate aminotransferase    ECUMN_2986', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?q WHERE { resource:4-aminobutyrate_aminotransferase____ECUMN_2986 property:found_in_taxon ?q . ?q rdf:type ontology:infraspecific_name }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q24148673
P702
Q863908
USER
Which nucleic acid sequence encodes 4-aminobutyrate aminotransferase    ECUMN_2986 ?
(Q24148673,P702,c(Q863908))
action filter_type
action find
entity Q24148673
relation P702
type Q863908
['Q24148673', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?s WHERE { resource:Q24148673 property:P702 ?s . ?s rdf:type ontology:Q863908 }
4-aminobutyrate aminotransferase    ECUMN_2986
action filter_type
action find
entity 4-aminobutyrate aminotransferase    ECUMN_2986
relation encoded by
type nucleic acid sequence
['4-aminobutyrate aminotransferase    ECUMN_2986', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?s WHERE { resource:4-aminobutyrate_aminotransferase____ECUMN_2986 property:encoded_by ?s . ?s rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23146209
SYSTEM
4-aminobutyrate aminotransferase    ECUMN_2986
Q23146209
(Q24148673,P702,c(Q863908))
action filter_type
action find
entity Q24148673
relation P702
type Q863908
4-aminobutyrate aminotransferase ECUMN 2986 encodes 4-aminobutyrate aminotransferase ECUMN_2986
['Q24148673', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?s WHERE { resource:Q24148673 property:P702 ?s . ?s rdf:type ontology:Q863908 }
4-aminobutyrate aminotransferase    ECUMN_2986
4-aminobutyrate aminotransferase ECUMN 2986 encodes 4-aminobutyrate aminotransferase ECUMN_2986
4-aminobutyrate aminotransferase    ECUMN_2986
action filter_type
action find
entity 4-aminobutyrate aminotransferase    ECUMN_2986
relation encoded by
type nucleic acid sequence
['4-aminobutyrate aminotransferase    ECUMN_2986', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?s WHERE { resource:4-aminobutyrate_aminotransferase____ECUMN_2986 property:encoded_by ?s . ?s rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q22336093
Q863908
USER
And how about site specific recombinase    lpg0145?
(Q22336093,P702,c(Q863908))
action filter_type
action find
entity Q22336093
relation P702
type Q863908
['Q22336093', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?h WHERE { resource:Q22336093 property:P702 ?h . ?h rdf:type ontology:Q863908 }
site specific recombinase    lpg0145
action filter_type
action find
entity site specific recombinase    lpg0145
relation encoded by
type nucleic acid sequence
['site specific recombinase    lpg0145', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?h WHERE { resource:site_specific_recombinase____lpg0145 property:encoded_by ?h . ?h rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q22333052
SYSTEM
site specific recombinase    lpg0145
Q22333052
(Q22336093,P702,c(Q863908))
action filter_type
action find
entity Q22336093
relation P702
type Q863908
[ANSWER]
['Q22336093', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?h WHERE { resource:Q22336093 property:P702 ?h . ?h rdf:type ontology:Q863908 }
site specific recombinase    lpg0145
site specific recombinase    lpg0145
action filter_type
action find
entity site specific recombinase    lpg0145
relation encoded by
type nucleic acid sequence
['site specific recombinase    lpg0145', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?h WHERE { resource:site_specific_recombinase____lpg0145 property:encoded_by ?h . ?h rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|3 entities, 2 direct, 2(direct) are query entities, subject is indirect
Q22333052 Q23504672 Q27759287
P688
Q181394
USER
Does that nucleic acid sequence encodes methylated-DNA--[protein]-cysteine S-methyltransferase    HMPREF0351_10564 and hypothetical protein    MSC_0378 ?
(Q22333052,P688,Q23504672) (Q22333052,P688,Q27759287)
action is_in
entity Q22333052
action intersection
action find_reverse
entity Q23504672
relation P688
action find_reverse
entity Q27759287
relation P688
['Q22333052', 'P688', 'Q23504672'] ['Q22333052', 'P688', 'Q27759287']
ASK WHERE { resource:Q22333052 property:P688 resource:Q23504672 . resource:Q22333052 property:P688 resource:Q27759287 }
site specific recombinase    lpg0145 methylated-DNA--[protein]-cysteine S-methyltransferase    HMPREF0351_10564 hypothetical protein    MSC_0378
action is_in
entity site specific recombinase    lpg0145
action intersection
action find_reverse
entity methylated-DNA--[protein]-cysteine S-methyltransferase    HMPREF0351_10564
relation encodes
action find_reverse
entity hypothetical protein    MSC_0378
relation encodes
['site specific recombinase    lpg0145', 'encodes', 'methylated-DNA--[protein]-cysteine S-methyltransferase    HMPREF0351_10564'] ['site specific recombinase    lpg0145', 'encodes', 'hypothetical protein    MSC_0378']
ASK WHERE { resource:site_specific_recombinase____lpg0145 property:encodes resource:methylated-DNA--[protein]-cysteine_S-methyltransferase____HMPREF0351_10564 . resource:site_specific_recombinase____lpg0145 property:encodes resource:hypothetical_protein____MSC_0378 }
[]
nutrient
SYSTEM
NO
(Q22333052,P688,Q23504672) (Q22333052,P688,Q27759287)
action is_in
entity Q22333052
action intersection
action find_reverse
entity Q23504672
relation P688
action find_reverse
entity Q27759287
relation P688
[ANSWER]
['Q22333052', 'P688', 'Q23504672'] ['Q22333052', 'P688', 'Q27759287']
ASK WHERE { resource:Q22333052 property:P688 resource:Q23504672 . resource:Q22333052 property:P688 resource:Q27759287 }
No
action is_in
entity site specific recombinase    lpg0145
action intersection
action find_reverse
entity methylated-DNA--[protein]-cysteine S-methyltransferase    HMPREF0351_10564
relation encodes
action find_reverse
entity hypothetical protein    MSC_0378
relation encodes
['site specific recombinase    lpg0145', 'encodes', 'methylated-DNA--[protein]-cysteine S-methyltransferase    HMPREF0351_10564'] ['site specific recombinase    lpg0145', 'encodes', 'hypothetical protein    MSC_0378']
ASK WHERE { resource:site_specific_recombinase____lpg0145 property:encodes resource:methylated-DNA--[protein]-cysteine_S-methyltransferase____HMPREF0351_10564 . resource:site_specific_recombinase____lpg0145 property:encodes resource:hypothetical_protein____MSC_0378 }
[]
Verification (Boolean) (All)
Verification|3 entities, all direct, 2 are query entities
Q23146209 Q23452098 Q21121556
P688
Q181394
USER
Does 4-aminobutyrate aminotransferase    ECUMN_2986 encode hypothetical protein    BF0543 and L-lactate dehydrogenase B chain ?
(Q23146209,P688,Q23452098) (Q23146209,P688,Q21121556)
action is_in
entity Q23146209
action intersection
action find_reverse
entity Q23452098
relation P688
action find_reverse
entity Q21121556
relation P688
['Q23146209', 'P688', 'Q23452098'] ['Q23146209', 'P688', 'Q21121556']
ASK WHERE { resource:Q23146209 property:P688 resource:Q23452098 . resource:Q23146209 property:P688 resource:Q21121556 }
4-aminobutyrate aminotransferase    ECUMN_2986 hypothetical protein    BF0543 L-lactate dehydrogenase B chain
action is_in
entity 4-aminobutyrate aminotransferase    ECUMN_2986
action intersection
action find_reverse
entity hypothetical protein    BF0543
relation encodes
action find_reverse
entity L-lactate dehydrogenase B chain
relation encodes
['4-aminobutyrate aminotransferase    ECUMN_2986', 'encodes', 'hypothetical protein    BF0543'] ['4-aminobutyrate aminotransferase    ECUMN_2986', 'encodes', 'L-lactate dehydrogenase B chain']
ASK WHERE { resource:4-aminobutyrate_aminotransferase____ECUMN_2986 property:encodes resource:hypothetical_protein____BF0543 . resource:4-aminobutyrate_aminotransferase____ECUMN_2986 property:encodes resource:L-lactate_dehydrogenase_B_chain }
[]
nutrient
SYSTEM
NO
(Q23146209,P688,Q23452098) (Q23146209,P688,Q21121556)
action is_in
entity Q23146209
action intersection
action find_reverse
entity Q23452098
relation P688
action find_reverse
entity Q21121556
relation P688
[ANSWER]
['Q23146209', 'P688', 'Q23452098'] ['Q23146209', 'P688', 'Q21121556']
ASK WHERE { resource:Q23146209 property:P688 resource:Q23452098 . resource:Q23146209 property:P688 resource:Q21121556 }
No
action is_in
entity 4-aminobutyrate aminotransferase    ECUMN_2986
action intersection
action find_reverse
entity hypothetical protein    BF0543
relation encodes
action find_reverse
entity L-lactate dehydrogenase B chain
relation encodes
['4-aminobutyrate aminotransferase    ECUMN_2986', 'encodes', 'hypothetical protein    BF0543'] ['4-aminobutyrate aminotransferase    ECUMN_2986', 'encodes', 'L-lactate dehydrogenase B chain']
ASK WHERE { resource:4-aminobutyrate_aminotransferase____ECUMN_2986 property:encodes resource:hypothetical_protein____BF0543 . resource:4-aminobutyrate_aminotransferase____ECUMN_2986 property:encodes resource:L-lactate_dehydrogenase_B_chain }
[]
Logical Reasoning (All)
Logical|Difference|Single_Relation
Q23606016 Q21121556
P681
Q15989253
USER
Which parts are components of L-lactate dehydrogenase B chain but not lytic transglycosylase    Smed_0672 ?
AND((Q21121556,P681,c(Q15989253)), NOT((Q23606016,P681,c(Q15989253))))
action filter_type
action difference
action find
entity Q21121556
relation P681
action find
entity Q23606016
relation P681
type Q15989253
{'AND': [['Q21121556', 'P681', {'concept': 'Q15989253'}], {'NOT': [['Q23606016', 'P681', {'concept': 'Q15989253'}]]}]}
SELECT DISTINCT ?m WHERE { MINUS { resource:Q23606016 property:P681 ?m } . resource:Q21121556 property:P681 ?m . ?m rdf:type ontology:Q15989253 }
lytic transglycosylase    Smed_0672 L-lactate dehydrogenase B chain
action filter_type
action difference
action find
entity L-lactate dehydrogenase B chain
relation cell component
action find
entity lytic transglycosylase    Smed_0672
relation cell component
type part
{'AND': [['L-lactate dehydrogenase B chain', 'cell component', {'concept': 'part'}], {'NOT': [['lytic transglycosylase    Smed_0672', 'cell component', {'concept': 'part'}]]}]}
SELECT DISTINCT ?m WHERE { MINUS { resource:lytic_transglycosylase____Smed_0672 property:cell_component ?m } . resource:L-lactate_dehydrogenase_B_chain property:cell_component ?m . ?m rdf:type ontology:part }
[]
part
Q79899 Q39572
SYSTEM
cytoplasm, mitochondrion
Q79899 Q39572
AND((Q21121556,P681,c(Q15989253)), NOT((Q23606016,P681,c(Q15989253))))
action filter_type
action difference
action find
entity Q21121556
relation P681
action find
entity Q23606016
relation P681
type Q15989253
[ANSWERS] are components of L-lactate dehydrogenase B chain but not lytic transglycosylase Smed_0672
{'AND': [['Q21121556', 'P681', {'concept': 'Q15989253'}], {'NOT': [['Q23606016', 'P681', {'concept': 'Q15989253'}]]}]}
SELECT DISTINCT ?m WHERE { MINUS { resource:Q23606016 property:P681 ?m } . resource:Q21121556 property:P681 ?m . ?m rdf:type ontology:Q15989253 }
cytoplasm mitochondrion
Cytoplasm and mitochondrion are components of L-lactate dehydrogenase B chain but not lytic transglycosylase Smed_0672
cytoplasm mitochondrion
action filter_type
action difference
action find
entity L-lactate dehydrogenase B chain
relation cell component
action find
entity lytic transglycosylase    Smed_0672
relation cell component
type part
{'AND': [['L-lactate dehydrogenase B chain', 'cell component', {'concept': 'part'}], {'NOT': [['lytic transglycosylase    Smed_0672', 'cell component', {'concept': 'part'}]]}]}
SELECT DISTINCT ?m WHERE { MINUS { resource:lytic_transglycosylase____Smed_0672 property:cell_component ?m } . resource:L-lactate_dehydrogenase_B_chain property:cell_component ?m . ?m rdf:type ontology:part }
[]
Clarification
Comparative|More/Less|Single entity type|Indirect
P361
Q15989253 Q5058355
USER
Which parts are greater number of cellular components a component of than that part ?
(c(Q5058355),P361,c(Q15989253))
[{'concept': 'Q5058355'}, 'P361', {'concept': 'Q15989253'}]
SELECT DISTINCT ?y WHERE { ?z property:P361 ?y . ?z rdf:type ontology:Q5058355 . ?y rdf:type ontology:Q153126 }
[{'concept': 'cellular component'}, 'part of', {'concept': 'part'}]
SELECT DISTINCT ?y WHERE { ?z property:part_of ?y . ?z rdf:type ontology:cellular_component . ?y rdf:type ontology:part }
[]
part cellular component
Comparative|More/Less|Single entity type|Clarification
Q79899
SYSTEM
Did you mean cytoplasm ?
(c(Q5058355),P361,c(Q15989253))
[ANSWER]
[{'concept': 'Q5058355'}, 'P361', {'concept': 'Q15989253'}]
SELECT DISTINCT ?y WHERE { ?z property:P361 ?y . ?z rdf:type ontology:Q5058355 . ?y rdf:type ontology:Q153126 }
Did you mean cytoplasm ?
cytoplasm
[{'concept': 'cellular component'}, 'part of', {'concept': 'part'}]
SELECT DISTINCT ?y WHERE { ?z property:part_of ?y . ?z rdf:type ontology:cellular_component . ?y rdf:type ontology:part }
[]
Comparative Reasoning (All)
USER
Yes
(c(Q5058355),P361,c(Q15989253))
[{'concept': 'Q5058355'}, 'P361', {'concept': 'Q15989253'}]
[{'concept': 'cellular component'}, 'part of', {'concept': 'part'}]
[]
Q39572 Q22328948 Q165963
SYSTEM
mitochondrion, virion, plastid
Q14349455 Q22328948 Q22327470 Q187181 Q165963 Q45948 Q14645596 Q39572
(c(Q5058355),P361,c(Q15989253))
[ANSWERS] are greater number of cellular components a component of than that part
[{'concept': 'Q5058355'}, 'P361', {'concept': 'Q15989253'}]
SELECT DISTINCT ?y WHERE { ?z property:P361 ?y . ?z rdf:type ontology:Q5058355 . ?y rdf:type ontology:Q153126 }
membrane virion mitochondrion-associated adherens complex synapse plastid organelle extracellular region mitochondrion
Mitochondrion, virion and plastid are greater number of cellular components a component of than that part
mitochondrion virion plastid
[{'concept': 'cellular component'}, 'part of', {'concept': 'part'}]
SELECT DISTINCT ?y WHERE { ?z property:part_of ?y . ?z rdf:type ontology:cellular_component . ?y rdf:type ontology:part }
[]