Simple Question (Direct)
Simple Question
Q24098317
P703
Q631147
USER
Which infraspecific name is queuine tRNA-ribosyltransferase    XCC2378 found in ?
(Q24098317,P703,c(Q631147))
action filter_type
action find
entity Q24098317
relation P703
type Q631147
['Q24098317', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:Q631147 . resource:Q24098317 property:P703 ?j }
queuine tRNA-ribosyltransferase    XCC2378
action filter_type
action find
entity queuine tRNA-ribosyltransferase    XCC2378
relation found in taxon
type infraspecific name
['queuine tRNA-ribosyltransferase    XCC2378', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:infraspecific_name . resource:queuine_tRNA-ribosyltransferase____XCC2378 property:found_in_taxon ?j }
[]
infraspecific name
Q21079491
SYSTEM
Xanthomonas campestris pv. campestris str. ATCC 33913
Q21079491
(Q24098317,P703,c(Q631147))
action filter_type
action find
entity Q24098317
relation P703
type Q631147
[ANSWER] is queuine tRNA-ribosyltransferase XCC2378 found in
['Q24098317', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:Q631147 . resource:Q24098317 property:P703 ?j }
Xanthomonas campestris pv. campestris str. ATCC 33913
Xanthomonas campestris pv. campestris str. ATCC 33913 is queuine tRNA-ribosyltransferase XCC2378 found in
Xanthomonas campestris pv. campestris str. ATCC 33913
action filter_type
action find
entity queuine tRNA-ribosyltransferase    XCC2378
relation found in taxon
type infraspecific name
['queuine tRNA-ribosyltransferase    XCC2378', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:infraspecific_name . resource:queuine_tRNA-ribosyltransferase____XCC2378 property:found_in_taxon ?j }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q24098317
P688
Q863908
USER
Which nucleic acid sequence encodes queuine tRNA-ribosyltransferase    XCC2378 ?
(c(Q863908),P688,Q24098317)
action filter_type
action find_reverse
entity Q24098317
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q24098317']
SELECT DISTINCT ?b WHERE { ?b property:P688 resource:Q24098317 . ?b rdf:type ontology:Q863908 }
queuine tRNA-ribosyltransferase    XCC2378
action filter_type
action find_reverse
entity queuine tRNA-ribosyltransferase    XCC2378
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'queuine tRNA-ribosyltransferase    XCC2378']
SELECT DISTINCT ?b WHERE { ?b property:encodes resource:queuine_tRNA-ribosyltransferase____XCC2378 . ?b rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23158156
SYSTEM
queuine tRNA-ribosyltransferase    XCC2378
Q23158156
(c(Q863908),P688,Q24098317)
action filter_type
action find_reverse
entity Q24098317
relation P688
type Q863908
Queuine tRNA-ribosyltransferase XCC2378 encodes queuine tRNA-ribosyltransferase XCC2378
[{'concept': 'Q863908'}, 'P688', 'Q24098317']
SELECT DISTINCT ?b WHERE { ?b property:P688 resource:Q24098317 . ?b rdf:type ontology:Q863908 }
queuine tRNA-ribosyltransferase    XCC2378
Queuine tRNA-ribosyltransferase XCC2378 encodes queuine tRNA-ribosyltransferase XCC2378
queuine tRNA-ribosyltransferase    XCC2378
action filter_type
action find_reverse
entity queuine tRNA-ribosyltransferase    XCC2378
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'queuine tRNA-ribosyltransferase    XCC2378']
SELECT DISTINCT ?b WHERE { ?b property:encodes resource:queuine_tRNA-ribosyltransferase____XCC2378 . ?b rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q24098317
P680
Q44424
USER
Which chemical bond represents molecular function of that nutrient ?
(Q23158156,P680,c(Q44424))
action filter_type
action find
entity Q24098317
relation P680
type Q44424
['Q23158156', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?y WHERE { resource:Q24098317 property:P680 ?y . ?y rdf:type ontology:Q44424 }
queuine tRNA-ribosyltransferase    XCC2378
action filter_type
action find
entity queuine tRNA-ribosyltransferase    XCC2378
relation molecular function
type chemical bond
['queuine tRNA-ribosyltransferase    XCC2378', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?y WHERE { resource:queuine_tRNA-ribosyltransferase____XCC2378 property:molecular_function ?y . ?y rdf:type ontology:chemical_bond }
[]
chemical bond
Q13667380
SYSTEM
metal ion binding
Q13667380
(Q23158156,P680,c(Q44424))
action filter_type
action find
entity Q24098317
relation P680
type Q44424
The [ANSWER] represents molecular function of that nutrient
['Q23158156', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?y WHERE { resource:Q24098317 property:P680 ?y . ?y rdf:type ontology:Q44424 }
metal ion binding
The metal ion binding represents molecular function of that nutrient
metal ion binding
action filter_type
action find
entity queuine tRNA-ribosyltransferase    XCC2378
relation molecular function
type chemical bond
['queuine tRNA-ribosyltransferase    XCC2378', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?y WHERE { resource:queuine_tRNA-ribosyltransferase____XCC2378 property:molecular_function ?y . ?y rdf:type ontology:chemical_bond }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q24098317
P702
Q863908
USER
What encodes that nutrient ?
(Q13667380,P702,c(Q863908))
action filter_type
action find
entity Q24098317
relation P702
type Q863908
['Q13667380', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?b WHERE { resource:Q24098317 property:P702 ?b . ?b rdf:type ontology:Q863908 }
queuine tRNA-ribosyltransferase    XCC2378
action filter_type
action find
entity queuine tRNA-ribosyltransferase    XCC2378
relation encoded by
type nucleic acid sequence
['metal ion binding', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?b WHERE { resource:queuine_tRNA-ribosyltransferase____XCC2378 property:encoded_by ?b . ?b rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23158156
SYSTEM
queuine tRNA-ribosyltransferase    XCC2378
Q23158156
(Q13667380,P702,c(Q863908))
action filter_type
action find
entity Q24098317
relation P702
type Q863908
Queuine tRNA-ribosyltransferase XCC2378 encodes that nutrient
['Q13667380', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?b WHERE { resource:Q24098317 property:P702 ?b . ?b rdf:type ontology:Q863908 }
queuine tRNA-ribosyltransferase    XCC2378
Queuine tRNA-ribosyltransferase XCC2378 encodes that nutrient
queuine tRNA-ribosyltransferase    XCC2378
action filter_type
action find
entity queuine tRNA-ribosyltransferase    XCC2378
relation encoded by
type nucleic acid sequence
['metal ion binding', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?b WHERE { resource:queuine_tRNA-ribosyltransferase____XCC2378 property:encoded_by ?b . ?b rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, subject is indirect
Q23158156 Q24098317
P688
Q181394
USER
Is queuine tRNA-ribosyltransferase    XCC2378 encoded by that nucleic acid sequence ?
(Q23158156,P688,Q24098317)
action is_in
entity Q24098317
action find
entity Q23158156
relation P688
['Q23158156', 'P688', 'Q24098317']
ASK WHERE { resource:Q23158156 property:P688 resource:Q24098317 }
queuine tRNA-ribosyltransferase    XCC2378 queuine tRNA-ribosyltransferase    XCC2378
action is_in
entity queuine tRNA-ribosyltransferase    XCC2378
action find
entity queuine tRNA-ribosyltransferase    XCC2378
relation encodes
['queuine tRNA-ribosyltransferase    XCC2378', 'encodes', 'queuine tRNA-ribosyltransferase    XCC2378']
ASK WHERE { resource:queuine_tRNA-ribosyltransferase____XCC2378 property:encodes resource:queuine_tRNA-ribosyltransferase____XCC2378 }
[]
nutrient
SYSTEM
YES
(Q23158156,P688,Q24098317)
action is_in
entity Q24098317
action find
entity Q23158156
relation P688
[ANSWER]
['Q23158156', 'P688', 'Q24098317']
ASK WHERE { resource:Q23158156 property:P688 resource:Q24098317 }
Yes
action is_in
entity queuine tRNA-ribosyltransferase    XCC2378
action find
entity queuine tRNA-ribosyltransferase    XCC2378
relation encodes
['queuine tRNA-ribosyltransferase    XCC2378', 'encodes', 'queuine tRNA-ribosyltransferase    XCC2378']
ASK WHERE { resource:queuine_tRNA-ribosyltransferase____XCC2378 property:encodes resource:queuine_tRNA-ribosyltransferase____XCC2378 }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q24098317
P681
Q15989253
USER
Which is the part that is a component of queuine tRNA-ribosyltransferase    XCC2378 ?
(Q24098317,P681,c(Q15989253))
action filter_type
action find
entity Q24098317
relation P681
type Q15989253
['Q24098317', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?j WHERE { resource:Q24098317 property:P681 ?j . ?j rdf:type ontology:Q15989253 }
queuine tRNA-ribosyltransferase    XCC2378
action filter_type
action find
entity queuine tRNA-ribosyltransferase    XCC2378
relation cell component
type part
['queuine tRNA-ribosyltransferase    XCC2378', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?j WHERE { resource:queuine_tRNA-ribosyltransferase____XCC2378 property:cell_component ?j . ?j rdf:type ontology:part }
[]
part
Q79899
SYSTEM
cytoplasm
Q79899
(Q24098317,P681,c(Q15989253))
action filter_type
action find
entity Q24098317
relation P681
type Q15989253
[ANSWER] is the part that is a component of queuine tRNA-ribosyltransferase XCC2378
['Q24098317', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?j WHERE { resource:Q24098317 property:P681 ?j . ?j rdf:type ontology:Q15989253 }
cytoplasm
Cytoplasm is the part that is a component of queuine tRNA-ribosyltransferase XCC2378
cytoplasm
action filter_type
action find
entity queuine tRNA-ribosyltransferase    XCC2378
relation cell component
type part
['queuine tRNA-ribosyltransferase    XCC2378', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?j WHERE { resource:queuine_tRNA-ribosyltransferase____XCC2378 property:cell_component ?j . ?j rdf:type ontology:part }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation|Incomplete
Q21985901 Q24098317
P681
Q15989253
USER
Or Nuclear protein 1?
OR((Q24098317,P681,c(Q15989253)), (Q21985901,P681,c(Q15989253)))
action filter_type
action union
action find
entity Q24098317
relation P681
action find
entity Q21985901
relation P681
type Q15989253
{'OR': [['Q24098317', 'P681', {'concept': 'Q15989253'}], ['Q21985901', 'P681', {'concept': 'Q15989253'}]]}
SELECT DISTINCT ?i WHERE { { VALUES ( ?u ) { ( resource:Q24098317 ) ( resource:Q21985901 ) } . ?u property:P681 ?i } . ?i rdf:type ontology:Q15989253 }
Nuclear protein 1 queuine tRNA-ribosyltransferase    XCC2378
action filter_type
action union
action find
entity queuine tRNA-ribosyltransferase    XCC2378
relation cell component
action find
entity Nuclear protein 1
relation cell component
type part
{'OR': [['queuine tRNA-ribosyltransferase    XCC2378', 'cell component', {'concept': 'part'}], ['Nuclear protein 1', 'cell component', {'concept': 'part'}]]}
SELECT DISTINCT ?i WHERE { { VALUES ( ?u ) { ( resource:queuine_tRNA-ribosyltransferase____XCC2378 ) ( resource:Nuclear_protein_1 ) } . ?u property:cell_component ?i } . ?i rdf:type ontology:part }
[]
part
Q79899 Q40260
SYSTEM
cytoplasm, nucleus
Q79899 Q40260
OR((Q24098317,P681,c(Q15989253)), (Q21985901,P681,c(Q15989253)))
action filter_type
action union
action find
entity Q24098317
relation P681
action find
entity Q21985901
relation P681
type Q15989253
[ANSWERS]
{'OR': [['Q24098317', 'P681', {'concept': 'Q15989253'}], ['Q21985901', 'P681', {'concept': 'Q15989253'}]]}
SELECT DISTINCT ?i WHERE { { VALUES ( ?u ) { ( resource:Q24098317 ) ( resource:Q21985901 ) } . ?u property:P681 ?i } . ?i rdf:type ontology:Q15989253 }
cytoplasm nucleus
cytoplasm nucleus
action filter_type
action union
action find
entity queuine tRNA-ribosyltransferase    XCC2378
relation cell component
action find
entity Nuclear protein 1
relation cell component
type part
{'OR': [['queuine tRNA-ribosyltransferase    XCC2378', 'cell component', {'concept': 'part'}], ['Nuclear protein 1', 'cell component', {'concept': 'part'}]]}
SELECT DISTINCT ?i WHERE { { VALUES ( ?u ) { ( resource:queuine_tRNA-ribosyltransferase____XCC2378 ) ( resource:Nuclear_protein_1 ) } . ?u property:cell_component ?i } . ?i rdf:type ontology:part }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type
Q23158156
P688
Q181394
USER
How many nutrients are queuine tRNA-ribosyltransferase    XCC2378 an encoding of ?
(Q23158156,P688,c(Q181394))
action count
action filter_type
action find
entity Q23158156
relation P688
type Q181394
['Q23158156', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?u ) AS ?y ) WHERE { resource:Q23158156 property:P688 ?u . ?u rdf:type ontology:Q181394 }
queuine tRNA-ribosyltransferase    XCC2378
action count
action filter_type
action find
entity queuine tRNA-ribosyltransferase    XCC2378
relation encodes
type nutrient
['queuine tRNA-ribosyltransferase    XCC2378', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?u ) AS ?y ) WHERE { resource:queuine_tRNA-ribosyltransferase____XCC2378 property:encodes ?u . ?u rdf:type ontology:nutrient }
[]
nutrient
SYSTEM
1
Q24098317
(Q23158156,P688,c(Q181394))
action count
action filter_type
action find
entity Q23158156
relation P688
type Q181394
[ANSWER]
['Q23158156', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?u ) AS ?y ) WHERE { resource:Q23158156 property:P688 ?u . ?u rdf:type ontology:Q181394 }
queuine tRNA-ribosyltransferase    XCC2378
1
action count
action filter_type
action find
entity queuine tRNA-ribosyltransferase    XCC2378
relation encodes
type nutrient
['queuine tRNA-ribosyltransferase    XCC2378', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?u ) AS ?y ) WHERE { resource:queuine_tRNA-ribosyltransferase____XCC2378 property:encodes ?u . ?u rdf:type ontology:nutrient }
[]