Simple Question (Direct)
Simple Question
Q286987
P688
Q181394
USER
Which nutrient is encoded by ABCA1 ?
(Q286987,P688,c(Q181394))
action filter_type
action find
entity Q286987
relation P688
type Q181394
['Q286987', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?t WHERE { resource:Q286987 property:P688 ?t . ?t rdf:type ontology:Q181394 }
ABCA1
action filter_type
action find
entity ABCA1
relation encodes
type nutrient
['ABCA1', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?t WHERE { resource:ABCA1 property:encodes ?t . ?t rdf:type ontology:nutrient }
[]
nutrient
Q21115210
SYSTEM
ATP-binding cassette sub-family A member 1
Q21115210
(Q286987,P688,c(Q181394))
action filter_type
action find
entity Q286987
relation P688
type Q181394
[ANSWER] is encoded by ABCA1
['Q286987', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?t WHERE { resource:Q286987 property:P688 ?t . ?t rdf:type ontology:Q181394 }
ATP-binding cassette sub-family A member 1
ATP-binding cassette sub-family A member 1 is encoded by ABCA1
ATP-binding cassette sub-family A member 1
action filter_type
action find
entity ABCA1
relation encodes
type nutrient
['ABCA1', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?t WHERE { resource:ABCA1 property:encodes ?t . ?t rdf:type ontology:nutrient }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q286987
P703
Q16521
USER
Which taxon is that nucleic acid sequence found in ?
(Q21115210,P703,c(Q16521))
action filter_type
action find
entity Q286987
relation P703
type Q16521
['Q21115210', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?i WHERE { resource:Q286987 property:P703 ?i . ?i rdf:type ontology:Q16521 }
ABCA1
action filter_type
action find
entity ABCA1
relation found in taxon
type taxon
['ATP-binding cassette sub-family A member 1', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?i WHERE { resource:ABCA1 property:found_in_taxon ?i . ?i rdf:type ontology:taxon }
[]
taxon
Q15978631
SYSTEM
Homo sapiens
Q15978631
(Q21115210,P703,c(Q16521))
action filter_type
action find
entity Q286987
relation P703
type Q16521
That nucleic acid sequence is found in [ANSWER]
['Q21115210', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?i WHERE { resource:Q286987 property:P703 ?i . ?i rdf:type ontology:Q16521 }
Homo sapiens
That nucleic acid sequence is found in Homo sapiens
Homo sapiens
action filter_type
action find
entity ABCA1
relation found in taxon
type taxon
['ATP-binding cassette sub-family A member 1', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?i WHERE { resource:ABCA1 property:found_in_taxon ?i . ?i rdf:type ontology:taxon }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q286987
P702
Q181394
USER
Which nutrient is encoded by that nucleic acid sequence ?
(c(Q181394),P702,Q15978631)
action filter_type
action find_reverse
entity Q286987
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q15978631']
SELECT DISTINCT ?a WHERE { ?a property:P702 resource:Q286987 . ?a rdf:type ontology:Q181394 }
ABCA1
action filter_type
action find_reverse
entity ABCA1
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'Homo sapiens']
SELECT DISTINCT ?a WHERE { ?a property:encoded_by resource:ABCA1 . ?a rdf:type ontology:nutrient }
[]
nutrient
Q21115210
SYSTEM
ATP-binding cassette sub-family A member 1
Q21115210
(c(Q181394),P702,Q15978631)
action filter_type
action find_reverse
entity Q286987
relation P702
type Q181394
The [ANSWER] is encoded by that nucleic acid sequence
[{'concept': 'Q181394'}, 'P702', 'Q15978631']
SELECT DISTINCT ?a WHERE { ?a property:P702 resource:Q286987 . ?a rdf:type ontology:Q181394 }
ATP-binding cassette sub-family A member 1
The ATP-binding cassette sub-family A member 1 is encoded by that nucleic acid sequence
ATP-binding cassette sub-family A member 1
action filter_type
action find_reverse
entity ABCA1
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'Homo sapiens']
SELECT DISTINCT ?a WHERE { ?a property:encoded_by resource:ABCA1 . ?a rdf:type ontology:nutrient }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type
Q21115210
P129
Q8386
USER
How many drugs contact ATP-binding cassette sub-family A member 1 ?
(c(Q8386),P129,Q21115210)
action count
action filter_type
action find_reverse
entity Q21115210
relation P129
type Q8386
[{'concept': 'Q8386'}, 'P129', 'Q21115210']
SELECT DISTINCT ( COUNT ( ?r ) AS ?a ) WHERE { ?r property:P129 resource:Q21115210 . ?r rdf:type ontology:Q8386 }
ATP-binding cassette sub-family A member 1
action count
action filter_type
action find_reverse
entity ATP-binding cassette sub-family A member 1
relation physically interacts with
type drug
[{'concept': 'drug'}, 'physically interacts with', 'ATP-binding cassette sub-family A member 1']
SELECT DISTINCT ( COUNT ( ?r ) AS ?a ) WHERE { ?r property:physically_interacts_with resource:ATP-binding_cassette_sub-family_A_member_1 . ?r rdf:type ontology:drug }
[]
drug
SYSTEM
1
Q10354103
(c(Q8386),P129,Q21115210)
action count
action filter_type
action find_reverse
entity Q21115210
relation P129
type Q8386
[ANSWER]
[{'concept': 'Q8386'}, 'P129', 'Q21115210']
SELECT DISTINCT ( COUNT ( ?r ) AS ?a ) WHERE { ?r property:P129 resource:Q21115210 . ?r rdf:type ontology:Q8386 }
probucol
1
action count
action filter_type
action find_reverse
entity ATP-binding cassette sub-family A member 1
relation physically interacts with
type drug
[{'concept': 'drug'}, 'physically interacts with', 'ATP-binding cassette sub-family A member 1']
SELECT DISTINCT ( COUNT ( ?r ) AS ?a ) WHERE { ?r property:physically_interacts_with resource:ATP-binding_cassette_sub-family_A_member_1 . ?r rdf:type ontology:drug }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21498666
P129
Q79529
USER
Which chemical substances can communicate with 5-hydroxytryptamine receptor 1B ?
(c(Q79529),P129,Q21498666)
action filter_type
action find_reverse
entity Q21498666
relation P129
type Q79529
[{'concept': 'Q79529'}, 'P129', 'Q21498666']
SELECT DISTINCT ?y WHERE { ?y property:P129 resource:Q21498666 . ?y rdf:type ontology:Q79529 }
5-hydroxytryptamine receptor 1B
action filter_type
action find_reverse
entity 5-hydroxytryptamine receptor 1B
relation physically interacts with
type chemical substance
[{'concept': 'chemical substance'}, 'physically interacts with', '5-hydroxytryptamine receptor 1B']
SELECT DISTINCT ?y WHERE { ?y property:physically_interacts_with resource:5-hydroxytryptamine_receptor_1B . ?y rdf:type ontology:chemical_substance }
[]
chemical substance
Q4639580 Q5197476 Q167934
SYSTEM
5-CT, cyanopindolol, 5-hydroxytryptamine
Q4639580 Q5197476 Q167934
(c(Q79529),P129,Q21498666)
action filter_type
action find_reverse
entity Q21498666
relation P129
type Q79529
[ANSWERS] can communicate with 5-hydroxytryptamine receptor 1B
[{'concept': 'Q79529'}, 'P129', 'Q21498666']
SELECT DISTINCT ?y WHERE { ?y property:P129 resource:Q21498666 . ?y rdf:type ontology:Q79529 }
5-CT cyanopindolol 5-hydroxytryptamine
5-CT, cyanopindolol and 5-hydroxytryptamine can communicate with 5-hydroxytryptamine receptor 1B
5-CT cyanopindolol 5-hydroxytryptamine
action filter_type
action find_reverse
entity 5-hydroxytryptamine receptor 1B
relation physically interacts with
type chemical substance
[{'concept': 'chemical substance'}, 'physically interacts with', '5-hydroxytryptamine receptor 1B']
SELECT DISTINCT ?y WHERE { ?y property:physically_interacts_with resource:5-hydroxytryptamine_receptor_1B . ?y rdf:type ontology:chemical_substance }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21115210
P681
Q5058355
USER
Which cellular components are the components of ATP-binding cassette sub-family A member 1 ?
(Q21115210,P681,c(Q5058355))
action filter_type
action find
entity Q21115210
relation P681
type Q5058355
['Q21115210', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?o WHERE { resource:Q21115210 property:P681 ?o . ?o rdf:type ontology:Q5058355 }
ATP-binding cassette sub-family A member 1
action filter_type
action find
entity ATP-binding cassette sub-family A member 1
relation cell component
type cellular component
['ATP-binding cassette sub-family A member 1', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?o WHERE { resource:ATP-binding_cassette_sub-family_A_member_1 property:cell_component ?o . ?o rdf:type ontology:cellular_component }
[]
cellular component
Q29548 Q14329032 Q189094
SYSTEM
plasma membrane, endoplasmic reticulum membrane, cell surface
Q29548 Q14329032 Q189094
(Q21115210,P681,c(Q5058355))
action filter_type
action find
entity Q21115210
relation P681
type Q5058355
[ANSWERS] are the components of ATP-binding cassette sub-family A member 1
['Q21115210', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?o WHERE { resource:Q21115210 property:P681 ?o . ?o rdf:type ontology:Q5058355 }
plasma membrane endoplasmic reticulum membrane cell surface
Plasma membrane, endoplasmic reticulum membrane and cell surface are the components of ATP-binding cassette sub-family A member 1
plasma membrane endoplasmic reticulum membrane cell surface
action filter_type
action find
entity ATP-binding cassette sub-family A member 1
relation cell component
type cellular component
['ATP-binding cassette sub-family A member 1', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?o WHERE { resource:ATP-binding_cassette_sub-family_A_member_1 property:cell_component ?o . ?o rdf:type ontology:cellular_component }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q21496847
Q5058355
USER
And also tell me about Protein AF-10?
(Q21496847,P681,c(Q5058355))
action filter_type
action find
entity Q21496847
relation P681
type Q5058355
['Q21496847', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?o WHERE { resource:Q21496847 property:P681 ?o . ?o rdf:type ontology:Q5058355 }
Protein AF-10
action filter_type
action find
entity Protein AF-10
relation cell component
type cellular component
['Protein AF-10', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?o WHERE { resource:Protein_AF-10 property:cell_component ?o . ?o rdf:type ontology:cellular_component }
[]
cellular component
Q420927
SYSTEM
protein complex
Q420927
(Q21496847,P681,c(Q5058355))
action filter_type
action find
entity Q21496847
relation P681
type Q5058355
[ANSWER]
['Q21496847', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?o WHERE { resource:Q21496847 property:P681 ?o . ?o rdf:type ontology:Q5058355 }
protein complex
protein complex
action filter_type
action find
entity Protein AF-10
relation cell component
type cellular component
['Protein AF-10', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?o WHERE { resource:Protein_AF-10 property:cell_component ?o . ?o rdf:type ontology:cellular_component }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23444846 Q21498666
P688
Q863908
USER
Which nucleic acid sequences encode 5-hydroxytryptamine receptor 1B or hypothetical protein    VPA0398 ?
OR((c(Q863908),P688,Q21498666), (c(Q863908),P688,Q23444846))
action filter_type
action union
action find_reverse
entity Q21498666
relation P688
action find_reverse
entity Q23444846
relation P688
type Q863908
{'OR': [[{'concept': 'Q863908'}, 'P688', 'Q21498666'], [{'concept': 'Q863908'}, 'P688', 'Q23444846']]}
SELECT DISTINCT ?o WHERE { { VALUES ( ?y ) { ( resource:Q21498666 ) ( resource:Q23444846 ) } . ?o property:P688 ?y } . ?o rdf:type ontology:Q863908 }
hypothetical protein    VPA0398 5-hydroxytryptamine receptor 1B
action filter_type
action union
action find_reverse
entity 5-hydroxytryptamine receptor 1B
relation encodes
action find_reverse
entity hypothetical protein    VPA0398
relation encodes
type nucleic acid sequence
{'OR': [[{'concept': 'nucleic acid sequence'}, 'encodes', '5-hydroxytryptamine receptor 1B'], [{'concept': 'nucleic acid sequence'}, 'encodes', 'hypothetical protein    VPA0398']]}
SELECT DISTINCT ?o WHERE { { VALUES ( ?y ) { ( resource:5-hydroxytryptamine_receptor_1B ) ( resource:hypothetical_protein____VPA0398 ) } . ?o property:encodes ?y } . ?o rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18251364 Q23166730
SYSTEM
Htr1b, hypothetical protein    VPA0398
Q18251364 Q23166730
OR((c(Q863908),P688,Q21498666), (c(Q863908),P688,Q23444846))
action filter_type
action union
action find_reverse
entity Q21498666
relation P688
action find_reverse
entity Q23444846
relation P688
type Q863908
[ANSWERS]
{'OR': [[{'concept': 'Q863908'}, 'P688', 'Q21498666'], [{'concept': 'Q863908'}, 'P688', 'Q23444846']]}
SELECT DISTINCT ?o WHERE { { VALUES ( ?y ) { ( resource:Q21498666 ) ( resource:Q23444846 ) } . ?o property:P688 ?y } . ?o rdf:type ontology:Q863908 }
Htr1b hypothetical protein    VPA0398
Htr1b and hypothetical protein VPA0398 encode 5-hydroxytryptamine receptor 1B or hypothetical protein VPA0398
Htr1b hypothetical protein    VPA0398
action filter_type
action union
action find_reverse
entity 5-hydroxytryptamine receptor 1B
relation encodes
action find_reverse
entity hypothetical protein    VPA0398
relation encodes
type nucleic acid sequence
{'OR': [[{'concept': 'nucleic acid sequence'}, 'encodes', '5-hydroxytryptamine receptor 1B'], [{'concept': 'nucleic acid sequence'}, 'encodes', 'hypothetical protein    VPA0398']]}
SELECT DISTINCT ?o WHERE { { VALUES ( ?y ) { ( resource:5-hydroxytryptamine_receptor_1B ) ( resource:hypothetical_protein____VPA0398 ) } . ?o property:encodes ?y } . ?o rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Mult. Entity
Q18251364 Q23166730
P702
Q181394
USER
What are the gene that are encoded by those nucleic acid sequences ?
(c(Q181394),P702,Q18251364) (c(Q181394),P702,Q23166730)
action filter_type
action find_reverse
entity prev_answer
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q18251364'] [{'concept': 'Q181394'}, 'P702', 'Q23166730']
SELECT DISTINCT ?i WHERE { ?i property:P702 ?h . VALUES ( ?h ) { ( resource:Q18251364 ) ( resource:Q23166730 ) } . ?i rdf:type ontology:Q181394 }
Htr1b hypothetical protein    VPA0398
action filter_type
action find_reverse
entity prev_answer
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'Htr1b'] [{'concept': 'nutrient'}, 'encoded by', 'hypothetical protein    VPA0398']
SELECT DISTINCT ?i WHERE { ?i property:encoded_by ?h . VALUES ( ?h ) { ( resource:Htr1b ) ( resource:hypothetical_protein____VPA0398 ) } . ?i rdf:type ontology:nutrient }
[]
nutrient
Q21498666 Q23444846
SYSTEM
5-hydroxytryptamine receptor 1B, hypothetical protein    VPA0398
Q21498666 Q23444846
(c(Q181394),P702,Q18251364) (c(Q181394),P702,Q23166730)
action filter_type
action find_reverse
entity prev_answer
relation P702
type Q181394
[ANSWERS]
[{'concept': 'Q181394'}, 'P702', 'Q18251364'] [{'concept': 'Q181394'}, 'P702', 'Q23166730']
SELECT DISTINCT ?i WHERE { ?i property:P702 ?h . VALUES ( ?h ) { ( resource:Q18251364 ) ( resource:Q23166730 ) } . ?i rdf:type ontology:Q181394 }
5-hydroxytryptamine receptor 1B hypothetical protein    VPA0398
The gene that are encoded by those nucleic acid sequences are the 5-hydroxytryptamine receptor 1B and hypothetical protein VPA0398
5-hydroxytryptamine receptor 1B hypothetical protein    VPA0398
action filter_type
action find_reverse
entity prev_answer
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'Htr1b'] [{'concept': 'nutrient'}, 'encoded by', 'hypothetical protein    VPA0398']
SELECT DISTINCT ?i WHERE { ?i property:encoded_by ?h . VALUES ( ?h ) { ( resource:Htr1b ) ( resource:hypothetical_protein____VPA0398 ) } . ?i rdf:type ontology:nutrient }
[]