Simple Question (Direct)
Simple Question
Q23614264
P680
Q44424
USER
What represents the molecular function of RNase H    SRU_1185 ?
(Q23614264,P680,c(Q44424))
action filter_type
action find
entity Q23614264
relation P680
type Q44424
['Q23614264', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?i WHERE { resource:Q23614264 property:P680 ?i . ?i rdf:type ontology:Q44424 }
RNase H    SRU_1185
action filter_type
action find
entity RNase H    SRU_1185
relation molecular function
type chemical bond
['RNase H    SRU_1185', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?i WHERE { resource:RNase_H____SRU_1185 property:molecular_function ?i . ?i rdf:type ontology:chemical_bond }
[]
chemical bond
Q14860850 Q13667380
SYSTEM
magnesium ion binding, metal ion binding
Q14860850 Q13667380
(Q23614264,P680,c(Q44424))
action filter_type
action find
entity Q23614264
relation P680
type Q44424
[ANSWERS] represent the molecular function of RNase H SRU_1185
['Q23614264', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?i WHERE { resource:Q23614264 property:P680 ?i . ?i rdf:type ontology:Q44424 }
magnesium ion binding metal ion binding
Magnesium ion binding and metal ion binding represent the molecular function of RNase H SRU_1185
magnesium ion binding metal ion binding
action filter_type
action find
entity RNase H    SRU_1185
relation molecular function
type chemical bond
['RNase H    SRU_1185', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?i WHERE { resource:RNase_H____SRU_1185 property:molecular_function ?i . ?i rdf:type ontology:chemical_bond }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23614264
P702
Q863908
USER
Which gene encodes that nutrient ?
(Q14860850,P702,c(Q863908)) (Q13667380,P702,c(Q863908))
action filter_type
action find
entity Q23614264
relation P702
type Q863908
['Q14860850', 'P702', {'concept': 'Q863908'}] ['Q13667380', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?j WHERE { resource:Q23614264 property:P702 ?j . ?j rdf:type ontology:Q863908 }
RNase H    SRU_1185
action filter_type
action find
entity RNase H    SRU_1185
relation encoded by
type nucleic acid sequence
['magnesium ion binding', 'encoded by', {'concept': 'nucleic acid sequence'}] ['metal ion binding', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?j WHERE { resource:RNase_H____SRU_1185 property:encoded_by ?j . ?j rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23389667
SYSTEM
RNase H    SRU_1185
Q23389667
(Q14860850,P702,c(Q863908)) (Q13667380,P702,c(Q863908))
action filter_type
action find
entity Q23614264
relation P702
type Q863908
RNase H SRU 1185 encodes that nutrient
['Q14860850', 'P702', {'concept': 'Q863908'}] ['Q13667380', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?j WHERE { resource:Q23614264 property:P702 ?j . ?j rdf:type ontology:Q863908 }
RNase H    SRU_1185
RNase H SRU 1185 encodes that nutrient
RNase H    SRU_1185
action filter_type
action find
entity RNase H    SRU_1185
relation encoded by
type nucleic acid sequence
['magnesium ion binding', 'encoded by', {'concept': 'nucleic acid sequence'}] ['metal ion binding', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?j WHERE { resource:RNase_H____SRU_1185 property:encoded_by ?j . ?j rdf:type ontology:nucleic_acid_sequence }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type
Q23614264
P703
Q631147
USER
How many infraspecific names are the taxon to which RNase H    SRU_1185 belongs to ?
(Q23614264,P703,c(Q631147))
action count
action filter_type
action find
entity Q23614264
relation P703
type Q631147
['Q23614264', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ( COUNT ( ?q ) AS ?u ) WHERE { resource:Q23614264 property:P703 ?q . ?q rdf:type ontology:Q631147 }
RNase H    SRU_1185
action count
action filter_type
action find
entity RNase H    SRU_1185
relation found in taxon
type infraspecific name
['RNase H    SRU_1185', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ( COUNT ( ?q ) AS ?u ) WHERE { resource:RNase_H____SRU_1185 property:found_in_taxon ?q . ?q rdf:type ontology:infraspecific_name }
[]
infraspecific name
SYSTEM
1
Q21079559
(Q23614264,P703,c(Q631147))
action count
action filter_type
action find
entity Q23614264
relation P703
type Q631147
[ANSWER]
['Q23614264', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ( COUNT ( ?q ) AS ?u ) WHERE { resource:Q23614264 property:P703 ?q . ?q rdf:type ontology:Q631147 }
Salinibacter ruber DSM 13855
1
action count
action filter_type
action find
entity RNase H    SRU_1185
relation found in taxon
type infraspecific name
['RNase H    SRU_1185', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ( COUNT ( ?q ) AS ?u ) WHERE { resource:RNase_H____SRU_1185 property:found_in_taxon ?q . ?q rdf:type ontology:infraspecific_name }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23544003
P703
Q631147
USER
What is the taxon to which 3-phosphoshikimate 1-carboxyvinyltransferase    BMA0235 belongs to ?
(Q23544003,P703,c(Q631147))
action filter_type
action find
entity Q23544003
relation P703
type Q631147
['Q23544003', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?m WHERE { resource:Q23544003 property:P703 ?m . ?m rdf:type ontology:Q631147 }
3-phosphoshikimate 1-carboxyvinyltransferase    BMA0235
action filter_type
action find
entity 3-phosphoshikimate 1-carboxyvinyltransferase    BMA0235
relation found in taxon
type infraspecific name
['3-phosphoshikimate 1-carboxyvinyltransferase    BMA0235', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?m WHERE { resource:3-phosphoshikimate_1-carboxyvinyltransferase____BMA0235 property:found_in_taxon ?m . ?m rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102993
SYSTEM
Burkholderia mallei ATCC 23344
Q21102993
(Q23544003,P703,c(Q631147))
action filter_type
action find
entity Q23544003
relation P703
type Q631147
[ANSWER]
['Q23544003', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?m WHERE { resource:Q23544003 property:P703 ?m . ?m rdf:type ontology:Q631147 }
Burkholderia mallei ATCC 23344
Burkholderia mallei ATCC 23344
Burkholderia mallei ATCC 23344
action filter_type
action find
entity 3-phosphoshikimate 1-carboxyvinyltransferase    BMA0235
relation found in taxon
type infraspecific name
['3-phosphoshikimate 1-carboxyvinyltransferase    BMA0235', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?m WHERE { resource:3-phosphoshikimate_1-carboxyvinyltransferase____BMA0235 property:found_in_taxon ?m . ?m rdf:type ontology:infraspecific_name }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23389667
P688
Q181394
USER
What is the nutrient encoded by RNase H    SRU_1185 ?
(Q23389667,P688,c(Q181394))
action filter_type
action find
entity Q23389667
relation P688
type Q181394
['Q23389667', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?d WHERE { resource:Q23389667 property:P688 ?d . ?d rdf:type ontology:Q181394 }
RNase H    SRU_1185
action filter_type
action find
entity RNase H    SRU_1185
relation encodes
type nutrient
['RNase H    SRU_1185', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?d WHERE { resource:RNase_H____SRU_1185 property:encodes ?d . ?d rdf:type ontology:nutrient }
[]
nutrient
Q23614264
SYSTEM
RNase H    SRU_1185
Q23614264
(Q23389667,P688,c(Q181394))
action filter_type
action find
entity Q23389667
relation P688
type Q181394
The nutrient encoded by RNase H SRU_1185 is not RNase H SRU 1185
['Q23389667', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?d WHERE { resource:Q23389667 property:P688 ?d . ?d rdf:type ontology:Q181394 }
RNase H    SRU_1185
The nutrient encoded by RNase H SRU_1185 is not RNase H SRU 1185
RNase H    SRU_1185
action filter_type
action find
entity RNase H    SRU_1185
relation encodes
type nutrient
['RNase H    SRU_1185', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?d WHERE { resource:RNase_H____SRU_1185 property:encodes ?d . ?d rdf:type ontology:nutrient }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q23174125
Q181394
USER
And what about hypothetical protein    EF1934?
(Q23174125,P688,c(Q181394))
action filter_type
action find
entity Q23174125
relation P688
type Q181394
['Q23174125', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?k WHERE { resource:Q23174125 property:P688 ?k . ?k rdf:type ontology:Q181394 }
hypothetical protein    EF1934
action filter_type
action find
entity hypothetical protein    EF1934
relation encodes
type nutrient
['hypothetical protein    EF1934', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?k WHERE { resource:hypothetical_protein____EF1934 property:encodes ?k . ?k rdf:type ontology:nutrient }
[]
nutrient
Q23500391
SYSTEM
hypothetical protein    EF1934
Q23500391
(Q23174125,P688,c(Q181394))
action filter_type
action find
entity Q23174125
relation P688
type Q181394
[ANSWER]
['Q23174125', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?k WHERE { resource:Q23174125 property:P688 ?k . ?k rdf:type ontology:Q181394 }
hypothetical protein    EF1934
hypothetical protein    EF1934
action filter_type
action find
entity hypothetical protein    EF1934
relation encodes
type nutrient
['hypothetical protein    EF1934', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?k WHERE { resource:hypothetical_protein____EF1934 property:encodes ?k . ?k rdf:type ontology:nutrient }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type|Indirect
P702
Q863908
USER
How many nucleic acid sequences are the gene that encodes that nutrient ?
(Q23500391,P702,c(Q863908))
action count
action filter_type
action find
entity Q23500391
relation P702
type Q863908
['Q23500391', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ( COUNT ( ?w ) AS ?q ) WHERE { resource:Q23500391 property:P702 ?w . ?w rdf:type ontology:Q863908 }
action count
action filter_type
action find
entity hypothetical protein    EF1934
relation encoded by
type nucleic acid sequence
['hypothetical protein    EF1934', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ( COUNT ( ?w ) AS ?q ) WHERE { resource:hypothetical_protein____EF1934 property:encoded_by ?w . ?w rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
SYSTEM
1
Q23174125
(Q23500391,P702,c(Q863908))
action count
action filter_type
action find
entity Q23500391
relation P702
type Q863908
[ANSWER]
['Q23500391', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ( COUNT ( ?w ) AS ?q ) WHERE { resource:Q23500391 property:P702 ?w . ?w rdf:type ontology:Q863908 }
hypothetical protein    EF1934
1
action count
action filter_type
action find
entity hypothetical protein    EF1934
relation encoded by
type nucleic acid sequence
['hypothetical protein    EF1934', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ( COUNT ( ?w ) AS ?q ) WHERE { resource:hypothetical_protein____EF1934 property:encoded_by ?w . ?w rdf:type ontology:nucleic_acid_sequence }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23063886 Q23614264
P688
Q863908
USER
Which nucleic acid sequences encode RNase H    SRU_1185 or tRNA (uracil-5-)-methyltransferase    LA_0098 ?
OR((c(Q863908),P688,Q23614264), (c(Q863908),P688,Q23063886))
action filter_type
action union
action find_reverse
entity Q23614264
relation P688
action find_reverse
entity Q23063886
relation P688
type Q863908
{'OR': [[{'concept': 'Q863908'}, 'P688', 'Q23614264'], [{'concept': 'Q863908'}, 'P688', 'Q23063886']]}
SELECT DISTINCT ?w WHERE { { { ?w property:P688 resource:Q23614264 } UNION { ?w property:P688 resource:Q23063886 } } . ?w rdf:type ontology:Q863908 }
tRNA (uracil-5-)-methyltransferase    LA_0098 RNase H    SRU_1185
action filter_type
action union
action find_reverse
entity RNase H    SRU_1185
relation encodes
action find_reverse
entity tRNA (uracil-5-)-methyltransferase    LA_0098
relation encodes
type nucleic acid sequence
{'OR': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'RNase H    SRU_1185'], [{'concept': 'nucleic acid sequence'}, 'encodes', 'tRNA (uracil-5-)-methyltransferase    LA_0098']]}
SELECT DISTINCT ?w WHERE { { { ?w property:encodes resource:RNase_H____SRU_1185 } UNION { ?w property:encodes resource:tRNA_(uracil-5-)-methyltransferase____LA_0098 } } . ?w rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23024603 Q23389667
SYSTEM
tRNA (uracil-5-)-methyltransferase    LA_0098, RNase H    SRU_1185
Q23024603 Q23389667
OR((c(Q863908),P688,Q23614264), (c(Q863908),P688,Q23063886))
action filter_type
action union
action find_reverse
entity Q23614264
relation P688
action find_reverse
entity Q23063886
relation P688
type Q863908
[ANSWERS]
{'OR': [[{'concept': 'Q863908'}, 'P688', 'Q23614264'], [{'concept': 'Q863908'}, 'P688', 'Q23063886']]}
SELECT DISTINCT ?w WHERE { { { ?w property:P688 resource:Q23614264 } UNION { ?w property:P688 resource:Q23063886 } } . ?w rdf:type ontology:Q863908 }
tRNA (uracil-5-)-methyltransferase    LA_0098 RNase H    SRU_1185
TRNA (uracil-5-)-methyltransferase LA 0098 and RNase H SRU 1185 encode RNase H SRU_1185 or tRNA (uracil-5-)-methyltransferase LA_0098
tRNA (uracil-5-)-methyltransferase    LA_0098 RNase H    SRU_1185
action filter_type
action union
action find_reverse
entity RNase H    SRU_1185
relation encodes
action find_reverse
entity tRNA (uracil-5-)-methyltransferase    LA_0098
relation encodes
type nucleic acid sequence
{'OR': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'RNase H    SRU_1185'], [{'concept': 'nucleic acid sequence'}, 'encodes', 'tRNA (uracil-5-)-methyltransferase    LA_0098']]}
SELECT DISTINCT ?w WHERE { { { ?w property:encodes resource:RNase_H____SRU_1185 } UNION { ?w property:encodes resource:tRNA_(uracil-5-)-methyltransferase____LA_0098 } } . ?w rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23614264
P681
Q15989253
USER
Which is the cell component of RNase H    SRU_1185 ?
(Q23614264,P681,c(Q15989253))
action filter_type
action find
entity Q23614264
relation P681
type Q15989253
['Q23614264', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?r WHERE { resource:Q23614264 property:P681 ?r . ?r rdf:type ontology:Q15989253 }
RNase H    SRU_1185
action filter_type
action find
entity RNase H    SRU_1185
relation cell component
type part
['RNase H    SRU_1185', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?r WHERE { resource:RNase_H____SRU_1185 property:cell_component ?r . ?r rdf:type ontology:part }
[]
part
Q79899
SYSTEM
cytoplasm
Q79899
(Q23614264,P681,c(Q15989253))
action filter_type
action find
entity Q23614264
relation P681
type Q15989253
Is the cell component of RNase H SRU_1185 the [ANSWER]
['Q23614264', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?r WHERE { resource:Q23614264 property:P681 ?r . ?r rdf:type ontology:Q15989253 }
cytoplasm
Is the cell component of RNase H SRU_1185 the cytoplasm
cytoplasm
action filter_type
action find
entity RNase H    SRU_1185
relation cell component
type part
['RNase H    SRU_1185', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?r WHERE { resource:RNase_H____SRU_1185 property:cell_component ?r . ?r rdf:type ontology:part }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q24118281
Q15989253
USER
And also tell me about membrane transport protein    BN112_0184?
(Q24118281,P681,c(Q15989253))
action filter_type
action find
entity Q24118281
relation P681
type Q15989253
['Q24118281', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?a WHERE { resource:Q24118281 property:P681 ?a . ?a rdf:type ontology:Q15989253 }
membrane transport protein    BN112_0184
action filter_type
action find
entity membrane transport protein    BN112_0184
relation cell component
type part
['membrane transport protein    BN112_0184', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?a WHERE { resource:membrane_transport_protein____BN112_0184 property:cell_component ?a . ?a rdf:type ontology:part }
[]
part
Q14349455
SYSTEM
membrane
Q14349455
(Q24118281,P681,c(Q15989253))
action filter_type
action find
entity Q24118281
relation P681
type Q15989253
[ANSWER]
['Q24118281', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?a WHERE { resource:Q24118281 property:P681 ?a . ?a rdf:type ontology:Q15989253 }
membrane
membrane
action filter_type
action find
entity membrane transport protein    BN112_0184
relation cell component
type part
['membrane transport protein    BN112_0184', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?a WHERE { resource:membrane_transport_protein____BN112_0184 property:cell_component ?a . ?a rdf:type ontology:part }
[]