Simple Question (Direct)
Simple Question
Q23494648
P703
Q631147
USER
Where is dihydropteroate synthase    spr0266 found ?
(Q23494648,P703,c(Q631147))
action filter_type
action find
entity Q23494648
relation P703
type Q631147
['Q23494648', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?b WHERE { resource:Q23494648 property:P703 ?b . ?b rdf:type ontology:Q631147 }
dihydropteroate synthase    spr0266
action filter_type
action find
entity dihydropteroate synthase    spr0266
relation found in taxon
type infraspecific name
['dihydropteroate synthase    spr0266', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?b WHERE { resource:dihydropteroate_synthase____spr0266 property:found_in_taxon ?b . ?b rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102963
SYSTEM
Streptococcus pneumoniae R6
Q21102963
(Q23494648,P703,c(Q631147))
action filter_type
action find
entity Q23494648
relation P703
type Q631147
Dihydropteroate synthase spr0266 is found in [ANSWER]
['Q23494648', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?b WHERE { resource:Q23494648 property:P703 ?b . ?b rdf:type ontology:Q631147 }
Streptococcus pneumoniae R6
Dihydropteroate synthase spr0266 is found in Streptococcus pneumoniae R6
Streptococcus pneumoniae R6
action filter_type
action find
entity dihydropteroate synthase    spr0266
relation found in taxon
type infraspecific name
['dihydropteroate synthase    spr0266', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?b WHERE { resource:dihydropteroate_synthase____spr0266 property:found_in_taxon ?b . ?b rdf:type ontology:infraspecific_name }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23494648
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(c(Q863908),P688,Q21102963)
action filter_type
action find_reverse
entity Q23494648
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q21102963']
SELECT DISTINCT ?j WHERE { ?j property:P688 resource:Q23494648 . ?j rdf:type ontology:Q863908 }
dihydropteroate synthase    spr0266
action filter_type
action find_reverse
entity dihydropteroate synthase    spr0266
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Streptococcus pneumoniae R6']
SELECT DISTINCT ?j WHERE { ?j property:encodes resource:dihydropteroate_synthase____spr0266 . ?j rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23228113
SYSTEM
dihydropteroate synthase    spr0266
Q23228113
(c(Q863908),P688,Q21102963)
action filter_type
action find_reverse
entity Q23494648
relation P688
type Q863908
Dihydropteroate synthase spr0266 encodes that nutrient
[{'concept': 'Q863908'}, 'P688', 'Q21102963']
SELECT DISTINCT ?j WHERE { ?j property:P688 resource:Q23494648 . ?j rdf:type ontology:Q863908 }
dihydropteroate synthase    spr0266
Dihydropteroate synthase spr0266 encodes that nutrient
dihydropteroate synthase    spr0266
action filter_type
action find_reverse
entity dihydropteroate synthase    spr0266
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Streptococcus pneumoniae R6']
SELECT DISTINCT ?j WHERE { ?j property:encodes resource:dihydropteroate_synthase____spr0266 . ?j rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|3 entities, 2 direct, 2(direct) are query entities, subject is indirect
Q23228113 Q23494648 Q27762450
P688
Q181394
USER
Does that nucleic acid sequence encodes dihydropteroate synthase    spr0266 and preprotein translocase subunit SecA    TM1578 ?
(Q23228113,P688,Q23494648) (Q23228113,P688,Q27762450)
action is_in
entity Q23228113
action intersection
action find_reverse
entity Q23494648
relation P688
action find_reverse
entity Q27762450
relation P688
['Q23228113', 'P688', 'Q23494648'] ['Q23228113', 'P688', 'Q27762450']
ASK WHERE { resource:Q23228113 property:P688 resource:Q23494648 . resource:Q23228113 property:P688 resource:Q27762450 }
dihydropteroate synthase    spr0266 dihydropteroate synthase    spr0266 preprotein translocase subunit SecA    TM1578
action is_in
entity dihydropteroate synthase    spr0266
action intersection
action find_reverse
entity dihydropteroate synthase    spr0266
relation encodes
action find_reverse
entity preprotein translocase subunit SecA    TM1578
relation encodes
['dihydropteroate synthase    spr0266', 'encodes', 'dihydropteroate synthase    spr0266'] ['dihydropteroate synthase    spr0266', 'encodes', 'preprotein translocase subunit SecA    TM1578']
ASK WHERE { resource:dihydropteroate_synthase____spr0266 property:encodes resource:dihydropteroate_synthase____spr0266 . resource:dihydropteroate_synthase____spr0266 property:encodes resource:preprotein_translocase_subunit_SecA____TM1578 }
[]
nutrient
SYSTEM
YES and NO respectively
(Q23228113,P688,Q23494648) (Q23228113,P688,Q27762450)
action is_in
entity Q23228113
action intersection
action find_reverse
entity Q23494648
relation P688
action find_reverse
entity Q27762450
relation P688
[ANSWER]
['Q23228113', 'P688', 'Q23494648'] ['Q23228113', 'P688', 'Q27762450']
ASK WHERE { resource:Q23228113 property:P688 resource:Q23494648 . resource:Q23228113 property:P688 resource:Q27762450 }
YES and NO respectively
action is_in
entity dihydropteroate synthase    spr0266
action intersection
action find_reverse
entity dihydropteroate synthase    spr0266
relation encodes
action find_reverse
entity preprotein translocase subunit SecA    TM1578
relation encodes
['dihydropteroate synthase    spr0266', 'encodes', 'dihydropteroate synthase    spr0266'] ['dihydropteroate synthase    spr0266', 'encodes', 'preprotein translocase subunit SecA    TM1578']
ASK WHERE { resource:dihydropteroate_synthase____spr0266 property:encodes resource:dihydropteroate_synthase____spr0266 . resource:dihydropteroate_synthase____spr0266 property:encodes resource:preprotein_translocase_subunit_SecA____TM1578 }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23228113
P702
Q181394
USER
Which nutrient is encoded by dihydropteroate synthase    spr0266 ?
(c(Q181394),P702,Q23228113)
action filter_type
action find_reverse
entity Q23228113
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q23228113']
SELECT DISTINCT ?a WHERE { ?a property:P702 resource:Q23228113 . ?a rdf:type ontology:Q181394 }
dihydropteroate synthase    spr0266
action filter_type
action find_reverse
entity dihydropteroate synthase    spr0266
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'dihydropteroate synthase    spr0266']
SELECT DISTINCT ?a WHERE { ?a property:encoded_by resource:dihydropteroate_synthase____spr0266 . ?a rdf:type ontology:nutrient }
[]
nutrient
Q23494648
SYSTEM
dihydropteroate synthase    spr0266
Q23494648
(c(Q181394),P702,Q23228113)
action filter_type
action find_reverse
entity Q23228113
relation P702
type Q181394
Dihydropteroate synthase spr0266 is encoded by dihydropteroate synthase spr0266
[{'concept': 'Q181394'}, 'P702', 'Q23228113']
SELECT DISTINCT ?a WHERE { ?a property:P702 resource:Q23228113 . ?a rdf:type ontology:Q181394 }
dihydropteroate synthase    spr0266
Dihydropteroate synthase spr0266 is encoded by dihydropteroate synthase spr0266
dihydropteroate synthase    spr0266
action filter_type
action find_reverse
entity dihydropteroate synthase    spr0266
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'dihydropteroate synthase    spr0266']
SELECT DISTINCT ?a WHERE { ?a property:encoded_by resource:dihydropteroate_synthase____spr0266 . ?a rdf:type ontology:nutrient }
[]
Quantitative Reasoning (All)
Quantitative|Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q181394 Q181394 Q8386
USER
Which nutrients do around 14 nutrients or drugs interact with ?
(c(Q181394)|c(Q8386),P129,c(Q181394))
action approx
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
value 14
[[{'concept': 'Q181394'}, {'concept': 'Q8386'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?a WHERE { FILTER ( ?v = 14 ) . { SELECT DISTINCT ( COUNT ( ?p ) AS ?v ) ?a WHERE { ?p rdf:type ?h . VALUES ( ?h ) { ( ontology:Q8386 ) ( ontology:Q181394 ) } } GROUP BY ?a } }
action approx
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
value 14
[[{'concept': 'nutrient'}, {'concept': 'drug'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?a WHERE { FILTER ( ?v = 14 ) . { SELECT DISTINCT ( COUNT ( ?p ) AS ?v ) ?a WHERE { ?p rdf:type ?h . VALUES ( ?h ) { ( ontology:drug ) ( ontology:nutrient ) } } GROUP BY ?a } }
[]
nutrient nutrient drug
Q416601 Q21110867 Q8083989
SYSTEM
Androgen receptor, D(1A) dopamine receptor, Kappa-type opioid receptor
Q308856 Q4847910 Q2271947 Q2663095 Q21173164 Q21172390 Q21126810 Q21110867 Q4847900 Q4847907 Q21116946 Q416601 Q4734886 Q2844056 Q21115334 Q21115052 Q21131500 Q4897175 Q8083989 Q21497878 Q21108125 Q21497939
(c(Q181394)|c(Q8386),P129,c(Q181394))
action approx
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
value 14
Around 14 nutrients or drugs interact with [ANSWERS]
[[{'concept': 'Q181394'}, {'concept': 'Q8386'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?a WHERE { FILTER ( ?v = 14 ) . { SELECT DISTINCT ( COUNT ( ?p ) AS ?v ) ?a WHERE { ?p rdf:type ?h . VALUES ( ?h ) { ( ontology:Q8386 ) ( ontology:Q181394 ) } } GROUP BY ?a } }
D(4) dopamine receptor Muscarinic acetylcholine receptor M2 Sodium-dependent dopamine transporter Glucocorticoid receptor Carbonic anhydrase 1 Vascular endothelial growth factor receptor 2 Prostaglandin G/H synthase 1 D(1A) dopamine receptor Muscarinic acetylcholine receptor M1 Muscarinic acetylcholine receptor M4 Carbonic anhydrase 12 Androgen receptor Alpha-1B adrenergic receptor Muscarinic acetylcholine receptor M3 Delta-type opioid receptor 5-hydroxytryptamine receptor 1F D(1B) dopamine receptor Beta-3 adrenergic receptor Kappa-type opioid receptor G protein-activated inward rectifier potassium channel 2 5-hydroxytryptamine receptor 3A 5-hydroxytryptamine receptor 7
Around 14 nutrients or drugs interact with Androgen receptor, D(1A) dopamine receptor and Kappa-type opioid receptor
Androgen receptor D(1A) dopamine receptor Kappa-type opioid receptor
action approx
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
value 14
[[{'concept': 'nutrient'}, {'concept': 'drug'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?a WHERE { FILTER ( ?v = 14 ) . { SELECT DISTINCT ( COUNT ( ?p ) AS ?v ) ?a WHERE { ?p rdf:type ?h . VALUES ( ?h ) { ( ontology:drug ) ( ontology:nutrient ) } } GROUP BY ?a } }
[]
Simple Question (Direct)
Simple Question|Mult. Entity|Indirect
Q416601 Q21110867 Q8083989
P702
Q863908
USER
Which genes encode Androgen receptor, D(1A) dopamine receptor and Kappa-type opioid receptor ?
(Q416601,P702,c(Q863908)) (Q21110867,P702,c(Q863908)) (Q8083989,P702,c(Q863908))
action union
action filter_type
action find
entity Q416601
relation P702
type Q863908
action filter_type
action find
entity Q21110867
relation P702
type Q863908
action filter_type
action find
entity Q8083989
relation P702
type Q863908
['Q416601', 'P702', {'concept': 'Q863908'}] ['Q21110867', 'P702', {'concept': 'Q863908'}] ['Q8083989', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?s WHERE { { resource:Q416601 property:P702 ?s . ?s rdf:type ontology:Q863908 } UNION { ?s rdf:type ontology:Q863908 . resource:Q21110867 property:P702 ?s } }
Androgen receptor D(1A) dopamine receptor Kappa-type opioid receptor
action union
action filter_type
action find
entity Androgen receptor
relation encoded by
type nucleic acid sequence
action filter_type
action find
entity D(1A) dopamine receptor
relation encoded by
type nucleic acid sequence
action filter_type
action find
entity Kappa-type opioid receptor
relation encoded by
type nucleic acid sequence
['Androgen receptor', 'encoded by', {'concept': 'nucleic acid sequence'}] ['D(1A) dopamine receptor', 'encoded by', {'concept': 'nucleic acid sequence'}] ['Kappa-type opioid receptor', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?s WHERE { { resource:Androgen_receptor property:encoded_by ?s . ?s rdf:type ontology:nucleic_acid_sequence } UNION { ?s rdf:type ontology:nucleic_acid_sequence . resource:D(1A)_dopamine_receptor property:encoded_by ?s } }
[]
nucleic acid sequence
Q14873015 Q2035393 Q14897645
SYSTEM
AR, DRD1, OPRK1
Q14873015 Q2035393 Q14897645
(Q416601,P702,c(Q863908)) (Q21110867,P702,c(Q863908)) (Q8083989,P702,c(Q863908))
action union
action filter_type
action find
entity Q416601
relation P702
type Q863908
action filter_type
action find
entity Q21110867
relation P702
type Q863908
action filter_type
action find
entity Q8083989
relation P702
type Q863908
[ANSWERS] encode Androgen receptor, D(1A) dopamine receptor and Kappa-type opioid receptor
['Q416601', 'P702', {'concept': 'Q863908'}] ['Q21110867', 'P702', {'concept': 'Q863908'}] ['Q8083989', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?s WHERE { { resource:Q416601 property:P702 ?s . ?s rdf:type ontology:Q863908 } UNION { ?s rdf:type ontology:Q863908 . resource:Q21110867 property:P702 ?s } }
AR DRD1 OPRK1
AR, DRD1 and OPRK1 encode Androgen receptor, D(1A) dopamine receptor and Kappa-type opioid receptor
AR DRD1 OPRK1
action union
action filter_type
action find
entity Androgen receptor
relation encoded by
type nucleic acid sequence
action filter_type
action find
entity D(1A) dopamine receptor
relation encoded by
type nucleic acid sequence
action filter_type
action find
entity Kappa-type opioid receptor
relation encoded by
type nucleic acid sequence
['Androgen receptor', 'encoded by', {'concept': 'nucleic acid sequence'}] ['D(1A) dopamine receptor', 'encoded by', {'concept': 'nucleic acid sequence'}] ['Kappa-type opioid receptor', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?s WHERE { { resource:Androgen_receptor property:encoded_by ?s . ?s rdf:type ontology:nucleic_acid_sequence } UNION { ?s rdf:type ontology:nucleic_acid_sequence . resource:D(1A)_dopamine_receptor property:encoded_by ?s } }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23494648
P682
Q2996394
USER
What is the biological process that dihydropteroate synthase    spr0266 is involved in ?
(Q23494648,P682,c(Q2996394))
action filter_type
action find
entity Q23494648
relation P682
type Q2996394
['Q23494648', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?s WHERE { resource:Q23494648 property:P682 ?s . ?s rdf:type ontology:Q2996394 }
dihydropteroate synthase    spr0266
action filter_type
action find
entity dihydropteroate synthase    spr0266
relation biological process
type biological process
['dihydropteroate synthase    spr0266', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?s WHERE { resource:dihydropteroate_synthase____spr0266 property:biological_process ?s . ?s rdf:type ontology:biological_process }
[]
biological process
Q14876924
SYSTEM
cellular metabolic process
Q14876924
(Q23494648,P682,c(Q2996394))
action filter_type
action find
entity Q23494648
relation P682
type Q2996394
The biological process that dihydropteroate synthase spr0266 is involved in is a [ANSWER]
['Q23494648', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?s WHERE { resource:Q23494648 property:P682 ?s . ?s rdf:type ontology:Q2996394 }
cellular metabolic process
The biological process that dihydropteroate synthase spr0266 is involved in is a cellular metabolic process
cellular metabolic process
action filter_type
action find
entity dihydropteroate synthase    spr0266
relation biological process
type biological process
['dihydropteroate synthase    spr0266', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?s WHERE { resource:dihydropteroate_synthase____spr0266 property:biological_process ?s . ?s rdf:type ontology:biological_process }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q21983339
Q2996394
USER
And what about Histamine H2 receptor?
(Q21983339,P682,c(Q2996394))
action filter_type
action find
entity Q21983339
relation P682
type Q2996394
['Q21983339', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?d WHERE { resource:Q21983339 property:P682 ?d . ?d rdf:type ontology:Q2996394 }
Histamine H2 receptor
action filter_type
action find
entity Histamine H2 receptor
relation biological process
type biological process
['Histamine H2 receptor', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?d WHERE { resource:Histamine_H2_receptor property:biological_process ?d . ?d rdf:type ontology:biological_process }
[]
biological process
Q1612119
SYSTEM
immune response
Q1612119
(Q21983339,P682,c(Q2996394))
action filter_type
action find
entity Q21983339
relation P682
type Q2996394
[ANSWER]
['Q21983339', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?d WHERE { resource:Q21983339 property:P682 ?d . ?d rdf:type ontology:Q2996394 }
immune response
immune response
action filter_type
action find
entity Histamine H2 receptor
relation biological process
type biological process
['Histamine H2 receptor', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?d WHERE { resource:Histamine_H2_receptor property:biological_process ?d . ?d rdf:type ontology:biological_process }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23494648
P680
Q44424
USER
What represents the molecular function of dihydropteroate synthase    spr0266 ?
(Q23494648,P680,c(Q44424))
action filter_type
action find
entity Q23494648
relation P680
type Q44424
['Q23494648', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?z WHERE { resource:Q23494648 property:P680 ?z . ?z rdf:type ontology:Q44424 }
dihydropteroate synthase    spr0266
action filter_type
action find
entity dihydropteroate synthase    spr0266
relation molecular function
type chemical bond
['dihydropteroate synthase    spr0266', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?z WHERE { resource:dihydropteroate_synthase____spr0266 property:molecular_function ?z . ?z rdf:type ontology:chemical_bond }
[]
chemical bond
Q13667380
SYSTEM
metal ion binding
Q13667380
(Q23494648,P680,c(Q44424))
action filter_type
action find
entity Q23494648
relation P680
type Q44424
The [ANSWER] represents the molecular function of dihydropteroate synthase spr0266
['Q23494648', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?z WHERE { resource:Q23494648 property:P680 ?z . ?z rdf:type ontology:Q44424 }
metal ion binding
The metal ion binding represents the molecular function of dihydropteroate synthase spr0266
metal ion binding
action filter_type
action find
entity dihydropteroate synthase    spr0266
relation molecular function
type chemical bond
['dihydropteroate synthase    spr0266', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?z WHERE { resource:dihydropteroate_synthase____spr0266 property:molecular_function ?z . ?z rdf:type ontology:chemical_bond }
[]