Simple Question (Direct)
Simple Question
Q23449255
P702
Q863908
USER
What is the gene that encodes UDP-N-acetylglucosamine acyltransferase    RP007 ?
(Q23449255,P702,c(Q863908))
action filter_type
action find
entity Q23449255
relation P702
type Q863908
['Q23449255', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?k WHERE { resource:Q23449255 property:P702 ?k . ?k rdf:type ontology:Q863908 }
UDP-N-acetylglucosamine acyltransferase    RP007
action filter_type
action find
entity UDP-N-acetylglucosamine acyltransferase    RP007
relation encoded by
type nucleic acid sequence
['UDP-N-acetylglucosamine acyltransferase    RP007', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?k WHERE { resource:UDP-N-acetylglucosamine_acyltransferase____RP007 property:encoded_by ?k . ?k rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23381532
SYSTEM
UDP-N-acetylglucosamine acyltransferase    RP007
Q23381532
(Q23449255,P702,c(Q863908))
action filter_type
action find
entity Q23449255
relation P702
type Q863908
The gene that encodes UDP-N-acetylglucosamine acyltransferase RP007 is also UDP-N-acetylglucosamine acyltransferase RP007
['Q23449255', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?k WHERE { resource:Q23449255 property:P702 ?k . ?k rdf:type ontology:Q863908 }
UDP-N-acetylglucosamine acyltransferase    RP007
The gene that encodes UDP-N-acetylglucosamine acyltransferase RP007 is also UDP-N-acetylglucosamine acyltransferase RP007
UDP-N-acetylglucosamine acyltransferase    RP007
action filter_type
action find
entity UDP-N-acetylglucosamine acyltransferase    RP007
relation encoded by
type nucleic acid sequence
['UDP-N-acetylglucosamine acyltransferase    RP007', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?k WHERE { resource:UDP-N-acetylglucosamine_acyltransferase____RP007 property:encoded_by ?k . ?k rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23449255
P703
Q631147
USER
Where is that nutrient found ?
(Q23381532,P703,c(Q631147))
action filter_type
action find
entity Q23449255
relation P703
type Q631147
['Q23381532', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:Q631147 . resource:Q23449255 property:P703 ?b }
UDP-N-acetylglucosamine acyltransferase    RP007
action filter_type
action find
entity UDP-N-acetylglucosamine acyltransferase    RP007
relation found in taxon
type infraspecific name
['UDP-N-acetylglucosamine acyltransferase    RP007', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:infraspecific_name . resource:UDP-N-acetylglucosamine_acyltransferase____RP007 property:found_in_taxon ?b }
[]
infraspecific name
Q21102949
SYSTEM
Rickettsia prowazekii str. Madrid E
Q21102949
(Q23381532,P703,c(Q631147))
action filter_type
action find
entity Q23449255
relation P703
type Q631147
That nutrient is found in [ANSWER]
['Q23381532', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:Q631147 . resource:Q23449255 property:P703 ?b }
Rickettsia prowazekii str. Madrid E
That nutrient is found in Rickettsia prowazekii str. Madrid E
Rickettsia prowazekii str. Madrid E
action filter_type
action find
entity UDP-N-acetylglucosamine acyltransferase    RP007
relation found in taxon
type infraspecific name
['UDP-N-acetylglucosamine acyltransferase    RP007', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:infraspecific_name . resource:UDP-N-acetylglucosamine_acyltransferase____RP007 property:found_in_taxon ?b }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q23147366
Q631147
USER
And how about kikA from plasmid origin    ECUMN_2297?
(Q23147366,P703,c(Q631147))
action filter_type
action find
entity Q23147366
relation P703
type Q631147
['Q23147366', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:Q631147 . resource:Q23147366 property:P703 ?s }
kikA from plasmid origin    ECUMN_2297
action filter_type
action find
entity kikA from plasmid origin    ECUMN_2297
relation found in taxon
type infraspecific name
['kikA from plasmid origin    ECUMN_2297', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:infraspecific_name . resource:kikA_from_plasmid_origin____ECUMN_2297 property:found_in_taxon ?s }
[]
infraspecific name
Q21102931
SYSTEM
Escherichia coli UMN026
Q21102931
(Q23147366,P703,c(Q631147))
action filter_type
action find
entity Q23147366
relation P703
type Q631147
[ANSWER]
['Q23147366', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:Q631147 . resource:Q23147366 property:P703 ?s }
Escherichia coli UMN026
Escherichia coli UMN026
action filter_type
action find
entity kikA from plasmid origin    ECUMN_2297
relation found in taxon
type infraspecific name
['kikA from plasmid origin    ECUMN_2297', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:infraspecific_name . resource:kikA_from_plasmid_origin____ECUMN_2297 property:found_in_taxon ?s }
[]
Comparative Reasoning (All)
Comparative|More/Less|Single entity type|Indirect
P703
Q631147 Q863908
USER
Which infraspecific names are the taxon to which less number of nucleic acid sequences belongs to than that infraspecific name ?
(c(Q863908),P703,c(Q631147))
action less
action find_reverse_tuple_counts
relation P703
type Q631147
type Q863908
action count
action filter_type
action find_reverse
entity Q21102931
relation P703
type Q863908
[{'concept': 'Q863908'}, 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?g WHERE { { SELECT DISTINCT ?g ( COUNT ( ?d ) AS ?m ) WHERE { ?d property:P703 ?g . ?g rdf:type ontology:Q631147 . ?d rdf:type ontology:Q863908 } GROUP BY ?g } . { SELECT DISTINCT ( COUNT ( ?x ) AS ?e ) WHERE { ?x property:P703 resource:Q21102931 . ?x rdf:type ontology:Q863908 } } . FILTER ( ?m < ?e ) }
action less
action find_reverse_tuple_counts
relation found in taxon
type infraspecific name
type nucleic acid sequence
action count
action filter_type
action find_reverse
entity Escherichia coli UMN026
relation found in taxon
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?g WHERE { { SELECT DISTINCT ?g ( COUNT ( ?d ) AS ?m ) WHERE { ?d property:found_in_taxon ?g . ?g rdf:type ontology:infraspecific_name . ?d rdf:type ontology:nucleic_acid_sequence } GROUP BY ?g } . { SELECT DISTINCT ( COUNT ( ?x ) AS ?e ) WHERE { ?x property:found_in_taxon resource:Escherichia_coli_UMN026 . ?x rdf:type ontology:nucleic_acid_sequence } } . FILTER ( ?m < ?e ) }
[]
infraspecific name nucleic acid sequence
Q21102919 Q21079559 Q21102990
SYSTEM
Legionella pneumophila subsp. pneumophila str. Philadelphia 1, Salinibacter ruber DSM 13855, Mycoplasma pneumoniae M129
Q21102990 Q21102991 Q21102992 Q21102993 Q21102994 Q21102996 Q21102997 Q21102999 Q21102960 Q21065229 Q21102919 Q21102943 Q21102942 Q21102941 Q21102940 Q21102947 Q21102946 Q21102920 Q21102965 Q21102964 Q21102949 Q21102966 Q21102961 Q21102963 Q21102962 Q21102921 Q21102987 Q21102922 Q21102925 Q21102924 Q21102927 Q21102974 Q21102989 Q21079491 Q21102985 Q21102984 Q21102983 Q21102982 Q21102981 Q21102980 Q21102973 Q21102969 Q21102944 Q21102968 Q21102954 Q21102955 Q21102956 Q21102957 Q21102950 Q21102951 Q21102978 Q21102953 Q21102976 Q21102977 Q21102975 Q21102959 Q21102971 Q21064863 Q21064832 Q21102948 Q21102934 Q21102979 Q21079559 Q21102938 Q21102967
(c(Q863908),P703,c(Q631147))
action less
action find_reverse_tuple_counts
relation P703
type Q631147
type Q863908
action count
action filter_type
action find_reverse
entity Q21102931
relation P703
type Q863908
[ANSWERS] are the taxon to which less number of nucleic acid sequences belongs to than that infraspecific name
[{'concept': 'Q863908'}, 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?g WHERE { { SELECT DISTINCT ?g ( COUNT ( ?d ) AS ?m ) WHERE { ?d property:P703 ?g . ?g rdf:type ontology:Q631147 . ?d rdf:type ontology:Q863908 } GROUP BY ?g } . { SELECT DISTINCT ( COUNT ( ?x ) AS ?e ) WHERE { ?x property:P703 resource:Q21102931 . ?x rdf:type ontology:Q863908 } } . FILTER ( ?m < ?e ) }
Mycoplasma pneumoniae M129 Thermotoga maritima MSB8 Gardnerella vaginalis ATCC 14019 Burkholderia mallei ATCC 23344 Streptococcus mitis B6 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Salmonella enterica subsp. enterica serovar Typhi str. CT18 Geobacter sulfurreducens PCA Streptococcus suis BM407 Leptospira interrogans serovar Lai str. 56601 Legionella pneumophila subsp. pneumophila str. Philadelphia 1 Yersinia pestis CO92 Yersinia enterocolitica subsp. enterocolitica 8081 Shigella flexneri 2a str. 301 Shigella dysenteriae Sd197 Vibrio parahaemolyticus RIMD 2210633 Vibrio fischeri ES114 Acinetobacter pittii PHEA-2 Enterococcus faecalis V583 Streptococcus pyogenes M1 GAS Rickettsia prowazekii str. Madrid E Enterococcus faecium DO Streptococcus mutans UA159 Streptococcus pneumoniae R6 Streptococcus agalactiae 2603V/R Neisseria gonorrhoeae FA 1090 Mycobacterium tuberculosis H37Rv Neisseria meningitidis MC58 Bordetella pertussis Tohama I Bordetella bronchiseptica 253 Enterobacter aerogenes KCTC 2190 Clostridium botulinum A str. Hall Mycoplasma mycoides subsp. mycoides SC str. PG1 Xanthomonas campestris pv. campestris str. ATCC 33913 Mycobacterium leprae TN Mycobacterium bovis AF2122/97 Corynebacterium glutamicum ATCC 13032 Bifidobacterium bifidum PRL2010 Listeria monocytogenes EGD-e Lactobacillus salivarius UCC118 Clostridium acetobutylicum ATCC 824 Bacillus anthracis str. Sterne Aeromonas hydrophila subsp. hydrophila ATCC 7966 Bacillus anthracis str. Ames Rhodospirillum rubrum ATCC 11170 Chloroflexus aurantiacus J-10-fl Staphylococcus aureus subsp. aureus NCTC 8325 Staphylococcus epidermidis ATCC 12228 Bacteroides fragilis YCH46 Fusobacterium nucleatum subsp. nucleatum ATCC 25586 Lactobacillus casei ATCC 334 Rhodobacter sphaeroides 2.4.1 Peptoclostridium difficile 630 Lactobacillus acidophilus NCFM Clostridium botulinum A str. ATCC 3502 Deinococcus radiodurans R1 Bacillus subtilis subsp. subtilis str. 168 Bordetella parapertussis Bpp5 Coxiella burnetii RSA 493 Haemophilus influenzae Rd KW20 Escherichia coli O83:H1 str. NRG 857C Lactobacillus plantarum WCFS1 Salinibacter ruber DSM 13855 Escherichia coli str. K-12 substr. MG1655 Lactococcus lactis subsp. lactis Il1403
Legionella pneumophila subsp. pneumophila str. Philadelphia 1, Salinibacter ruber DSM 13855 and Mycoplasma pneumoniae M129 are the taxon to which less number of nucleic acid sequences belongs to than that infraspecific name
Legionella pneumophila subsp. pneumophila str. Philadelphia 1 Salinibacter ruber DSM 13855 Mycoplasma pneumoniae M129
action less
action find_reverse_tuple_counts
relation found in taxon
type infraspecific name
type nucleic acid sequence
action count
action filter_type
action find_reverse
entity Escherichia coli UMN026
relation found in taxon
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?g WHERE { { SELECT DISTINCT ?g ( COUNT ( ?d ) AS ?m ) WHERE { ?d property:found_in_taxon ?g . ?g rdf:type ontology:infraspecific_name . ?d rdf:type ontology:nucleic_acid_sequence } GROUP BY ?g } . { SELECT DISTINCT ( COUNT ( ?x ) AS ?e ) WHERE { ?x property:found_in_taxon resource:Escherichia_coli_UMN026 . ?x rdf:type ontology:nucleic_acid_sequence } } . FILTER ( ?m < ?e ) }
[]