Simple Question (Direct)
Simple Question
Q23507145
P702
Q863908
USER
Which gene encodes oligoendopeptidase F    L166370 ?
(Q23507145,P702,c(Q863908))
action filter_type
action find
entity Q23507145
relation P702
type Q863908
['Q23507145', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?a WHERE { resource:Q23507145 property:P702 ?a . ?a rdf:type ontology:Q863908 }
oligoendopeptidase F    L166370
action filter_type
action find
entity oligoendopeptidase F    L166370
relation encoded by
type nucleic acid sequence
['oligoendopeptidase F    L166370', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?a WHERE { resource:oligoendopeptidase_F____L166370 property:encoded_by ?a . ?a rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23186373
SYSTEM
oligoendopeptidase F    L166370
Q23186373
(Q23507145,P702,c(Q863908))
action filter_type
action find
entity Q23507145
relation P702
type Q863908
Oligoendopeptidase F L166370 encodes oligoendopeptidase F L166370
['Q23507145', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?a WHERE { resource:Q23507145 property:P702 ?a . ?a rdf:type ontology:Q863908 }
oligoendopeptidase F    L166370
Oligoendopeptidase F L166370 encodes oligoendopeptidase F L166370
oligoendopeptidase F    L166370
action filter_type
action find
entity oligoendopeptidase F    L166370
relation encoded by
type nucleic acid sequence
['oligoendopeptidase F    L166370', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?a WHERE { resource:oligoendopeptidase_F____L166370 property:encoded_by ?a . ?a rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23507145
P688
Q863908
USER
What is the nucleic acid sequence that is encoded by oligoendopeptidase F    L166370 ?
(c(Q863908),P688,Q23507145)
action filter_type
action find_reverse
entity Q23507145
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q23507145']
SELECT DISTINCT ?u WHERE { ?u property:P688 resource:Q23507145 . ?u rdf:type ontology:Q863908 }
oligoendopeptidase F    L166370
action filter_type
action find_reverse
entity oligoendopeptidase F    L166370
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'oligoendopeptidase F    L166370']
SELECT DISTINCT ?u WHERE { ?u property:encodes resource:oligoendopeptidase_F____L166370 . ?u rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23186373
SYSTEM
oligoendopeptidase F    L166370
Q23186373
(c(Q863908),P688,Q23507145)
action filter_type
action find_reverse
entity Q23507145
relation P688
type Q863908
The nucleic acid sequence that is encoded by oligoendopeptidase F L166370 is by oligoendopeptidase F L166370
[{'concept': 'Q863908'}, 'P688', 'Q23507145']
SELECT DISTINCT ?u WHERE { ?u property:P688 resource:Q23507145 . ?u rdf:type ontology:Q863908 }
oligoendopeptidase F    L166370
The nucleic acid sequence that is encoded by oligoendopeptidase F L166370 is by oligoendopeptidase F L166370
oligoendopeptidase F    L166370
action filter_type
action find_reverse
entity oligoendopeptidase F    L166370
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'oligoendopeptidase F    L166370']
SELECT DISTINCT ?u WHERE { ?u property:encodes resource:oligoendopeptidase_F____L166370 . ?u rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q23186373 Q27762227
P688
Q181394
USER
Is oligoendopeptidase F    L166370 an encoding of hypothetical protein    TM1649 ?
(Q23186373,P688,Q27762227)
action is_in
entity Q27762227
action find
entity Q23186373
relation P688
['Q23186373', 'P688', 'Q27762227']
ASK WHERE { resource:Q23186373 property:P688 resource:Q27762227 }
oligoendopeptidase F    L166370 hypothetical protein    TM1649
action is_in
entity hypothetical protein    TM1649
action find
entity oligoendopeptidase F    L166370
relation encodes
['oligoendopeptidase F    L166370', 'encodes', 'hypothetical protein    TM1649']
ASK WHERE { resource:oligoendopeptidase_F____L166370 property:encodes resource:hypothetical_protein____TM1649 }
[]
nutrient
SYSTEM
NO
(Q23186373,P688,Q27762227)
action is_in
entity Q27762227
action find
entity Q23186373
relation P688
[ANSWER]
['Q23186373', 'P688', 'Q27762227']
ASK WHERE { resource:Q23186373 property:P688 resource:Q27762227 }
No
action is_in
entity hypothetical protein    TM1649
action find
entity oligoendopeptidase F    L166370
relation encodes
['oligoendopeptidase F    L166370', 'encodes', 'hypothetical protein    TM1649']
ASK WHERE { resource:oligoendopeptidase_F____L166370 property:encodes resource:hypothetical_protein____TM1649 }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q23507145 Q13667380
P680
Q44424
USER
Does metal ion binding represent the molecular function of oligoendopeptidase F    L166370 ?
(Q23507145,P680,Q13667380)
action is_in
entity Q13667380
action find
entity Q23507145
relation P680
['Q23507145', 'P680', 'Q13667380']
ASK WHERE { resource:Q23507145 property:P680 resource:Q13667380 }
oligoendopeptidase F    L166370 metal ion binding
action is_in
entity metal ion binding
action find
entity oligoendopeptidase F    L166370
relation molecular function
['oligoendopeptidase F    L166370', 'molecular function', 'metal ion binding']
ASK WHERE { resource:oligoendopeptidase_F____L166370 property:molecular_function resource:metal_ion_binding }
[]
chemical bond
SYSTEM
YES
(Q23507145,P680,Q13667380)
action is_in
entity Q13667380
action find
entity Q23507145
relation P680
[ANSWER]
['Q23507145', 'P680', 'Q13667380']
ASK WHERE { resource:Q23507145 property:P680 resource:Q13667380 }
Yes
action is_in
entity metal ion binding
action find
entity oligoendopeptidase F    L166370
relation molecular function
['oligoendopeptidase F    L166370', 'molecular function', 'metal ion binding']
ASK WHERE { resource:oligoendopeptidase_F____L166370 property:molecular_function resource:metal_ion_binding }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23507145
P703
Q631147
USER
Where is oligoendopeptidase F    L166370 found ?
(Q23507145,P703,c(Q631147))
action filter_type
action find
entity Q23507145
relation P703
type Q631147
['Q23507145', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?o WHERE { resource:Q23507145 property:P703 ?o . ?o rdf:type ontology:Q631147 }
oligoendopeptidase F    L166370
action filter_type
action find
entity oligoendopeptidase F    L166370
relation found in taxon
type infraspecific name
['oligoendopeptidase F    L166370', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?o WHERE { resource:oligoendopeptidase_F____L166370 property:found_in_taxon ?o . ?o rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102967
SYSTEM
Lactococcus lactis subsp. lactis Il1403
Q21102967
(Q23507145,P703,c(Q631147))
action filter_type
action find
entity Q23507145
relation P703
type Q631147
Oligoendopeptidase F L166370 is found in [ANSWER]
['Q23507145', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?o WHERE { resource:Q23507145 property:P703 ?o . ?o rdf:type ontology:Q631147 }
Lactococcus lactis subsp. lactis Il1403
Oligoendopeptidase F L166370 is found in Lactococcus lactis subsp. lactis Il1403
Lactococcus lactis subsp. lactis Il1403
action filter_type
action find
entity oligoendopeptidase F    L166370
relation found in taxon
type infraspecific name
['oligoendopeptidase F    L166370', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?o WHERE { resource:oligoendopeptidase_F____L166370 property:found_in_taxon ?o . ?o rdf:type ontology:infraspecific_name }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q23517188
Q631147
USER
And also tell me about immunity protein SdpI    BSU33780?
(Q23517188,P703,c(Q631147))
action filter_type
action find
entity Q23517188
relation P703
type Q631147
['Q23517188', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?g WHERE { resource:Q23517188 property:P703 ?g . ?g rdf:type ontology:Q631147 }
immunity protein SdpI    BSU33780
action filter_type
action find
entity immunity protein SdpI    BSU33780
relation found in taxon
type infraspecific name
['immunity protein SdpI    BSU33780', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?g WHERE { resource:immunity_protein_SdpI____BSU33780 property:found_in_taxon ?g . ?g rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102971
SYSTEM
Bacillus subtilis subsp. subtilis str. 168
Q21102971
(Q23517188,P703,c(Q631147))
action filter_type
action find
entity Q23517188
relation P703
type Q631147
[ANSWER]
['Q23517188', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?g WHERE { resource:Q23517188 property:P703 ?g . ?g rdf:type ontology:Q631147 }
Bacillus subtilis subsp. subtilis str. 168
Bacillus subtilis subsp. subtilis str. 168
action filter_type
action find
entity immunity protein SdpI    BSU33780
relation found in taxon
type infraspecific name
['immunity protein SdpI    BSU33780', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?g WHERE { resource:immunity_protein_SdpI____BSU33780 property:found_in_taxon ?g . ?g rdf:type ontology:infraspecific_name }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Mult. entity type|Indirect
P703
Q631147 Q181394 Q863908
USER
How many infraspecific names are lesser number of nutrients or nucleic acid sequences a part of than that infraspecific name ?
(c(Q181394)|c(Q863908),P703,c(Q631147))
action count
action less
action union
action find_reverse_tuple_counts
relation P703
type Q631147
type Q181394
action find_reverse_tuple_counts
relation P703
type Q631147
type Q863908
action count
action filter_multi_types
action find_reverse
entity Q21102971
relation P703
type Q181394
type Q863908
[[{'concept': 'Q181394'}, {'concept': 'Q863908'}], 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ( COUNT ( ?t ) AS ?b ) WHERE { { SELECT DISTINCT ( COUNT ( ?w ) AS ?c ) ?t WHERE { VALUES ( ?z ) { ( ontology:Q181394 ) ( ontology:Q863908 ) } . ?w rdf:type ?z } GROUP BY ?t } . { SELECT DISTINCT ( COUNT ( ?j ) AS ?g ) WHERE { ?j property:P703 resource:Q21102971 . { { ?j rdf:type ontology:Q181394 } UNION { ?j rdf:type ontology:Q863908 } } } } . FILTER ( ?c < ?g ) }
action count
action less
action union
action find_reverse_tuple_counts
relation found in taxon
type infraspecific name
type nutrient
action find_reverse_tuple_counts
relation found in taxon
type infraspecific name
type nucleic acid sequence
action count
action filter_multi_types
action find_reverse
entity Bacillus subtilis subsp. subtilis str. 168
relation found in taxon
type nutrient
type nucleic acid sequence
[[{'concept': 'nutrient'}, {'concept': 'nucleic acid sequence'}], 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ( COUNT ( ?t ) AS ?b ) WHERE { { SELECT DISTINCT ( COUNT ( ?w ) AS ?c ) ?t WHERE { VALUES ( ?z ) { ( ontology:nutrient ) ( ontology:nucleic_acid_sequence ) } . ?w rdf:type ?z } GROUP BY ?t } . { SELECT DISTINCT ( COUNT ( ?j ) AS ?g ) WHERE { ?j property:found_in_taxon resource:Bacillus_subtilis_subsp._subtilis_str._168 . { { ?j rdf:type ontology:nutrient } UNION { ?j rdf:type ontology:nucleic_acid_sequence } } } } . FILTER ( ?c < ?g ) }
[]
infraspecific name nutrient nucleic acid sequence
SYSTEM
52
Q21102990 Q21102991 Q21102992 Q21102994 Q21102999 Q21102960 Q21065229 Q21102919 Q21102942 Q21102941 Q21102940 Q21102946 Q21102920 Q21102965 Q21102964 Q21102949 Q21102966 Q21102961 Q21102963 Q21102962 Q21102921 Q21102987 Q21102922 Q21102925 Q21102974 Q21102989 Q21102985 Q21102984 Q21102983 Q21102982 Q21102981 Q21102980 Q21102973 Q21102969 Q21102944 Q21102968 Q21102954 Q21102955 Q21102956 Q21102957 Q21102951 Q21102978 Q21102976 Q21102977 Q21102975 Q21102959 Q21064832 Q21102948 Q21102979 Q21079559 Q21102938 Q21102967
(c(Q181394)|c(Q863908),P703,c(Q631147))
action count
action less
action union
action find_reverse_tuple_counts
relation P703
type Q631147
type Q181394
action find_reverse_tuple_counts
relation P703
type Q631147
type Q863908
action count
action filter_multi_types
action find_reverse
entity Q21102971
relation P703
type Q181394
type Q863908
[ANSWER]
[[{'concept': 'Q181394'}, {'concept': 'Q863908'}], 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ( COUNT ( ?t ) AS ?b ) WHERE { { SELECT DISTINCT ( COUNT ( ?w ) AS ?c ) ?t WHERE { VALUES ( ?z ) { ( ontology:Q181394 ) ( ontology:Q863908 ) } . ?w rdf:type ?z } GROUP BY ?t } . { SELECT DISTINCT ( COUNT ( ?j ) AS ?g ) WHERE { ?j property:P703 resource:Q21102971 . { { ?j rdf:type ontology:Q181394 } UNION { ?j rdf:type ontology:Q863908 } } } } . FILTER ( ?c < ?g ) }
Mycoplasma pneumoniae M129 Thermotoga maritima MSB8 Gardnerella vaginalis ATCC 14019 Streptococcus mitis B6 Geobacter sulfurreducens PCA Streptococcus suis BM407 Leptospira interrogans serovar Lai str. 56601 Legionella pneumophila subsp. pneumophila str. Philadelphia 1 Yersinia enterocolitica subsp. enterocolitica 8081 Shigella flexneri 2a str. 301 Shigella dysenteriae Sd197 Vibrio fischeri ES114 Acinetobacter pittii PHEA-2 Enterococcus faecalis V583 Streptococcus pyogenes M1 GAS Rickettsia prowazekii str. Madrid E Enterococcus faecium DO Streptococcus mutans UA159 Streptococcus pneumoniae R6 Streptococcus agalactiae 2603V/R Neisseria gonorrhoeae FA 1090 Mycobacterium tuberculosis H37Rv Neisseria meningitidis MC58 Bordetella pertussis Tohama I Clostridium botulinum A str. Hall Mycoplasma mycoides subsp. mycoides SC str. PG1 Mycobacterium leprae TN Mycobacterium bovis AF2122/97 Corynebacterium glutamicum ATCC 13032 Bifidobacterium bifidum PRL2010 Listeria monocytogenes EGD-e Lactobacillus salivarius UCC118 Clostridium acetobutylicum ATCC 824 Bacillus anthracis str. Sterne Aeromonas hydrophila subsp. hydrophila ATCC 7966 Bacillus anthracis str. Ames Rhodospirillum rubrum ATCC 11170 Chloroflexus aurantiacus J-10-fl Staphylococcus aureus subsp. aureus NCTC 8325 Staphylococcus epidermidis ATCC 12228 Fusobacterium nucleatum subsp. nucleatum ATCC 25586 Lactobacillus casei ATCC 334 Peptoclostridium difficile 630 Lactobacillus acidophilus NCFM Clostridium botulinum A str. ATCC 3502 Deinococcus radiodurans R1 Coxiella burnetii RSA 493 Haemophilus influenzae Rd KW20 Lactobacillus plantarum WCFS1 Salinibacter ruber DSM 13855 Escherichia coli str. K-12 substr. MG1655 Lactococcus lactis subsp. lactis Il1403
52
action count
action less
action union
action find_reverse_tuple_counts
relation found in taxon
type infraspecific name
type nutrient
action find_reverse_tuple_counts
relation found in taxon
type infraspecific name
type nucleic acid sequence
action count
action filter_multi_types
action find_reverse
entity Bacillus subtilis subsp. subtilis str. 168
relation found in taxon
type nutrient
type nucleic acid sequence
[[{'concept': 'nutrient'}, {'concept': 'nucleic acid sequence'}], 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ( COUNT ( ?t ) AS ?b ) WHERE { { SELECT DISTINCT ( COUNT ( ?w ) AS ?c ) ?t WHERE { VALUES ( ?z ) { ( ontology:nutrient ) ( ontology:nucleic_acid_sequence ) } . ?w rdf:type ?z } GROUP BY ?t } . { SELECT DISTINCT ( COUNT ( ?j ) AS ?g ) WHERE { ?j property:found_in_taxon resource:Bacillus_subtilis_subsp._subtilis_str._168 . { { ?j rdf:type ontology:nutrient } UNION { ?j rdf:type ontology:nucleic_acid_sequence } } } } . FILTER ( ?c < ?g ) }
[]