Simple Question (Direct)
Simple Question
Q23063610
P682
Q1057
USER
Which metabolic process is phosphoheptose isomerase    LA_2092 involved in ?
(Q23063610,P682,c(Q1057))
action filter_type
action find
entity Q23063610
relation P682
type Q1057
['Q23063610', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?c WHERE { resource:Q23063610 property:P682 ?c . ?c rdf:type ontology:Q1057 }
phosphoheptose isomerase    LA_2092
action filter_type
action find
entity phosphoheptose isomerase    LA_2092
relation biological process
type metabolic process
['phosphoheptose isomerase    LA_2092', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?c WHERE { resource:phosphoheptose_isomerase____LA_2092 property:biological_process ?c . ?c rdf:type ontology:metabolic_process }
[]
metabolic process
Q14762260
SYSTEM
carbohydrate metabolic process
Q14762260
(Q23063610,P682,c(Q1057))
action filter_type
action find
entity Q23063610
relation P682
type Q1057
[ANSWER] is phosphoheptose isomerase LA_2092 involved in
['Q23063610', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?c WHERE { resource:Q23063610 property:P682 ?c . ?c rdf:type ontology:Q1057 }
carbohydrate metabolic process
Carbohydrate metabolic process is phosphoheptose isomerase LA_2092 involved in
carbohydrate metabolic process
action filter_type
action find
entity phosphoheptose isomerase    LA_2092
relation biological process
type metabolic process
['phosphoheptose isomerase    LA_2092', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?c WHERE { resource:phosphoheptose_isomerase____LA_2092 property:biological_process ?c . ?c rdf:type ontology:metabolic_process }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23063610
P688
Q863908
USER
Which nucleic acid sequence encodes phosphoheptose isomerase    LA_2092 ?
(c(Q863908),P688,Q23063610)
action filter_type
action find_reverse
entity Q23063610
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q23063610']
SELECT DISTINCT ?t WHERE { ?t rdf:type ontology:Q863908 . ?t property:P688 resource:Q23063610 }
phosphoheptose isomerase    LA_2092
action filter_type
action find_reverse
entity phosphoheptose isomerase    LA_2092
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'phosphoheptose isomerase    LA_2092']
SELECT DISTINCT ?t WHERE { ?t rdf:type ontology:nucleic_acid_sequence . ?t property:encodes resource:phosphoheptose_isomerase____LA_2092 }
[]
nucleic acid sequence
Q23024332
SYSTEM
phosphoheptose isomerase    LA_2092
Q23024332
(c(Q863908),P688,Q23063610)
action filter_type
action find_reverse
entity Q23063610
relation P688
type Q863908
Phosphoheptose isomerase LA 2092 encodes phosphoheptose isomerase LA_2092
[{'concept': 'Q863908'}, 'P688', 'Q23063610']
SELECT DISTINCT ?t WHERE { ?t rdf:type ontology:Q863908 . ?t property:P688 resource:Q23063610 }
phosphoheptose isomerase    LA_2092
Phosphoheptose isomerase LA 2092 encodes phosphoheptose isomerase LA_2092
phosphoheptose isomerase    LA_2092
action filter_type
action find_reverse
entity phosphoheptose isomerase    LA_2092
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'phosphoheptose isomerase    LA_2092']
SELECT DISTINCT ?t WHERE { ?t rdf:type ontology:nucleic_acid_sequence . ?t property:encodes resource:phosphoheptose_isomerase____LA_2092 }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, subject is indirect
Q23024332 Q24097693
P688
Q181394
USER
Is hypothetical protein    XCC2561 encoded by that nucleic acid sequence ?
(Q23024332,P688,Q24097693)
action is_in
entity Q24097693
action find
entity Q23024332
relation P688
['Q23024332', 'P688', 'Q24097693']
ASK WHERE { resource:Q23024332 property:P688 resource:Q24097693 }
phosphoheptose isomerase    LA_2092 hypothetical protein    XCC2561
action is_in
entity hypothetical protein    XCC2561
action find
entity phosphoheptose isomerase    LA_2092
relation encodes
['phosphoheptose isomerase    LA_2092', 'encodes', 'hypothetical protein    XCC2561']
ASK WHERE { resource:phosphoheptose_isomerase____LA_2092 property:encodes resource:hypothetical_protein____XCC2561 }
[]
nutrient
SYSTEM
NO
(Q23024332,P688,Q24097693)
action is_in
entity Q24097693
action find
entity Q23024332
relation P688
[ANSWER]
['Q23024332', 'P688', 'Q24097693']
ASK WHERE { resource:Q23024332 property:P688 resource:Q24097693 }
No
action is_in
entity hypothetical protein    XCC2561
action find
entity phosphoheptose isomerase    LA_2092
relation encodes
['phosphoheptose isomerase    LA_2092', 'encodes', 'hypothetical protein    XCC2561']
ASK WHERE { resource:phosphoheptose_isomerase____LA_2092 property:encodes resource:hypothetical_protein____XCC2561 }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23024332
P703
Q631147
USER
Where is that nucleic acid sequence found ?
action filter_type
action find
entity Q23024332
relation P703
type Q631147
SELECT DISTINCT ?i WHERE { ?i rdf:type ontology:Q631147 . resource:Q23024332 property:P703 ?i }
phosphoheptose isomerase    LA_2092
action filter_type
action find
entity phosphoheptose isomerase    LA_2092
relation found in taxon
type infraspecific name
SELECT DISTINCT ?i WHERE { ?i rdf:type ontology:infraspecific_name . resource:phosphoheptose_isomerase____LA_2092 property:found_in_taxon ?i }
[]
infraspecific name
Q21065229
SYSTEM
Leptospira interrogans serovar Lai str. 56601
Q21065229
action filter_type
action find
entity Q23024332
relation P703
type Q631147
That nucleic acid sequence is found in [ANSWER]
SELECT DISTINCT ?i WHERE { ?i rdf:type ontology:Q631147 . resource:Q23024332 property:P703 ?i }
Leptospira interrogans serovar Lai str. 56601
That nucleic acid sequence is found in Leptospira interrogans serovar Lai str. 56601
Leptospira interrogans serovar Lai str. 56601
action filter_type
action find
entity phosphoheptose isomerase    LA_2092
relation found in taxon
type infraspecific name
SELECT DISTINCT ?i WHERE { ?i rdf:type ontology:infraspecific_name . resource:phosphoheptose_isomerase____LA_2092 property:found_in_taxon ?i }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23063610
P702
Q863908
USER
Which nucleic acid sequence encodes phosphoheptose isomerase    LA_2092 ?
(Q23063610,P702,c(Q863908))
action filter_type
action find
entity Q23063610
relation P702
type Q863908
['Q23063610', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?d WHERE { ?d rdf:type ontology:Q863908 . resource:Q23063610 property:P702 ?d }
phosphoheptose isomerase    LA_2092
action filter_type
action find
entity phosphoheptose isomerase    LA_2092
relation encoded by
type nucleic acid sequence
['phosphoheptose isomerase    LA_2092', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?d WHERE { ?d rdf:type ontology:nucleic_acid_sequence . resource:phosphoheptose_isomerase____LA_2092 property:encoded_by ?d }
[]
nucleic acid sequence
Q23024332
SYSTEM
phosphoheptose isomerase    LA_2092
Q23024332
(Q23063610,P702,c(Q863908))
action filter_type
action find
entity Q23063610
relation P702
type Q863908
Phosphoheptose isomerase LA 2092 encodes phosphoheptose isomerase LA_2092
['Q23063610', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?d WHERE { ?d rdf:type ontology:Q863908 . resource:Q23063610 property:P702 ?d }
phosphoheptose isomerase    LA_2092
Phosphoheptose isomerase LA 2092 encodes phosphoheptose isomerase LA_2092
phosphoheptose isomerase    LA_2092
action filter_type
action find
entity phosphoheptose isomerase    LA_2092
relation encoded by
type nucleic acid sequence
['phosphoheptose isomerase    LA_2092', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?d WHERE { ?d rdf:type ontology:nucleic_acid_sequence . resource:phosphoheptose_isomerase____LA_2092 property:encoded_by ?d }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q23423115
Q863908
USER
And what about hypothetical protein    SF1524?
(Q23423115,P702,c(Q863908))
action filter_type
action find
entity Q23423115
relation P702
type Q863908
['Q23423115', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?n WHERE { resource:Q23423115 property:P702 ?n . ?n rdf:type ontology:Q863908 }
hypothetical protein    SF1524
action filter_type
action find
entity hypothetical protein    SF1524
relation encoded by
type nucleic acid sequence
['hypothetical protein    SF1524', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?n WHERE { resource:hypothetical_protein____SF1524 property:encoded_by ?n . ?n rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23096467
SYSTEM
hypothetical protein    SF1524
Q23096467
(Q23423115,P702,c(Q863908))
action filter_type
action find
entity Q23423115
relation P702
type Q863908
[ANSWER]
['Q23423115', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?n WHERE { resource:Q23423115 property:P702 ?n . ?n rdf:type ontology:Q863908 }
hypothetical protein    SF1524
hypothetical protein    SF1524
action filter_type
action find
entity hypothetical protein    SF1524
relation encoded by
type nucleic acid sequence
['hypothetical protein    SF1524', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?n WHERE { resource:hypothetical_protein____SF1524 property:encoded_by ?n . ?n rdf:type ontology:nucleic_acid_sequence }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q8386 Q79529 Q181394
USER
How many nutrients communicates with exactly 19 drugs or chemical substances ?
(c(Q181394),P129,c(Q8386)|c(Q79529))
action count
action equal
action union
action find_tuple_counts
relation P129
type Q181394
type Q8386
action find_tuple_counts
relation P129
type Q181394
type Q79529
value 19
[{'concept': 'Q181394'}, 'P129', [{'concept': 'Q8386'}, {'concept': 'Q79529'}]]
SELECT DISTINCT ( COUNT ( ?u ) AS ?t ) WHERE { { SELECT DISTINCT ( COUNT ( ?f ) AS ?p ) ?u WHERE { { ?u rdf:type ontology:Q181394 . ?f rdf:type ontology:Q8386 . ?u property:P129 ?f } UNION { ?u property:P129 ?f . ?u rdf:type ontology:Q181394 . ?f rdf:type ontology:Q79529 } } GROUP BY ?u } . FILTER ( ?p = 19 ) }
action count
action equal
action union
action find_tuple_counts
relation physically interacts with
type nutrient
type drug
action find_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
value 19
[{'concept': 'nutrient'}, 'physically interacts with', [{'concept': 'drug'}, {'concept': 'chemical substance'}]]
SELECT DISTINCT ( COUNT ( ?u ) AS ?t ) WHERE { { SELECT DISTINCT ( COUNT ( ?f ) AS ?p ) ?u WHERE { { ?u rdf:type ontology:nutrient . ?f rdf:type ontology:drug . ?u property:physically_interacts_with ?f } UNION { ?u property:physically_interacts_with ?f . ?u rdf:type ontology:nutrient . ?f rdf:type ontology:chemical_substance } } GROUP BY ?u } . FILTER ( ?p = 19 ) }
[]
drug chemical substance nutrient
SYSTEM
2
Q12746120 Q7834290
(c(Q181394),P129,c(Q8386)|c(Q79529))
action count
action equal
action union
action find_tuple_counts
relation P129
type Q181394
type Q8386
action find_tuple_counts
relation P129
type Q181394
type Q79529
value 19
[ANSWER]
[{'concept': 'Q181394'}, 'P129', [{'concept': 'Q8386'}, {'concept': 'Q79529'}]]
SELECT DISTINCT ( COUNT ( ?u ) AS ?t ) WHERE { { SELECT DISTINCT ( COUNT ( ?f ) AS ?p ) ?u WHERE { { ?u rdf:type ontology:Q181394 . ?f rdf:type ontology:Q8386 . ?u property:P129 ?f } UNION { ?u property:P129 ?f . ?u rdf:type ontology:Q181394 . ?f rdf:type ontology:Q79529 } } GROUP BY ?u } . FILTER ( ?p = 19 ) }
Muscarinic acetylcholine receptor M5 Transient receptor potential cation channel subfamily A member 1
2
action count
action equal
action union
action find_tuple_counts
relation physically interacts with
type nutrient
type drug
action find_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
value 19
[{'concept': 'nutrient'}, 'physically interacts with', [{'concept': 'drug'}, {'concept': 'chemical substance'}]]
SELECT DISTINCT ( COUNT ( ?u ) AS ?t ) WHERE { { SELECT DISTINCT ( COUNT ( ?f ) AS ?p ) ?u WHERE { { ?u rdf:type ontology:nutrient . ?f rdf:type ontology:drug . ?u property:physically_interacts_with ?f } UNION { ?u property:physically_interacts_with ?f . ?u rdf:type ontology:nutrient . ?f rdf:type ontology:chemical_substance } } GROUP BY ?u } . FILTER ( ?p = 19 ) }
[]
Quantitative Reasoning (All)
Quantitative|Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q181394 Q181394 Q79529
USER
Which nutrients do exactly 4 nutrients or chemical substances interact with ?
(c(Q181394)|c(Q79529),P129,c(Q181394))
action equal
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
value 4
[[{'concept': 'Q181394'}, {'concept': 'Q79529'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?k WHERE { FILTER ( ?n = 4 ) . { SELECT DISTINCT ( COUNT ( ?t ) AS ?n ) ?k WHERE { { ?t property:P129 ?k . ?k rdf:type ontology:Q181394 . ?t rdf:type ontology:Q181394 } UNION { ?t property:P129 ?k . ?t rdf:type ontology:Q79529 . ?k rdf:type ontology:Q181394 } } GROUP BY ?k } }
action equal
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
value 4
[[{'concept': 'nutrient'}, {'concept': 'chemical substance'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?k WHERE { FILTER ( ?n = 4 ) . { SELECT DISTINCT ( COUNT ( ?t ) AS ?n ) ?k WHERE { { ?t property:physically_interacts_with ?k . ?k rdf:type ontology:nutrient . ?t rdf:type ontology:nutrient } UNION { ?t property:physically_interacts_with ?k . ?t rdf:type ontology:chemical_substance . ?k rdf:type ontology:nutrient } } GROUP BY ?k } }
[]
nutrient nutrient chemical substance
Q424401 Q21173381 Q21118862
SYSTEM
Epidermal growth factor receptor, Histone deacetylase 6, Glutamate receptor ionotropic, NMDA 1
Q14872770 Q21173427 Q21108695 Q4789584 Q4789587 Q287958 Q5500227 Q7671479 Q21103155 Q21122995 Q4734887 Q21988386 Q21173381 Q21126779 Q21126777 Q5500222 Q4822491 Q3454525 Q21118072 Q21132004 Q6590408 Q7671468 Q21118862 Q5773160 Q6590443 Q21122997 Q21108125 Q415271 Q21122433 Q424401 Q21119822 Q21173206
(c(Q181394)|c(Q79529),P129,c(Q181394))
action equal
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
value 4
[ANSWERS]
[[{'concept': 'Q181394'}, {'concept': 'Q79529'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?k WHERE { FILTER ( ?n = 4 ) . { SELECT DISTINCT ( COUNT ( ?t ) AS ?n ) ?k WHERE { { ?t property:P129 ?k . ?k rdf:type ontology:Q181394 . ?t rdf:type ontology:Q181394 } UNION { ?t property:P129 ?k . ?t rdf:type ontology:Q79529 . ?k rdf:type ontology:Q181394 } } GROUP BY ?k } }
Histamine H4 receptor Histone deacetylase 9 G-protein coupled receptor 84 Vasopressin V1a receptor Vasopressin V1b receptor Beta-1 adrenergic receptor Free fatty acid receptor 3 Transient receptor potential cation channel subfamily M member 3 Glycine receptor subunit alpha-1 Melatonin receptor type 1A Alpha-1D adrenergic receptor Delta-type opioid receptor Histone deacetylase 6 P2Y purinoceptor 4 P2Y purinoceptor 2 Free fatty acid receptor 1 Aurora kinase B Progesterone receptor Steroid hormone receptor ERR1 Endothelin-1 receptor Metabotropic glutamate receptor 8 Short transient receptor potential channel 5 Glutamate receptor ionotropic, NMDA 1 Histone deacetylase 5 Oxytocin receptor Melatonin receptor type 1B 5-hydroxytryptamine receptor 3A Receptor tyrosine-protein kinase erbB-2 Orexin receptor type 1 Epidermal growth factor receptor Inward rectifier potassium channel 4 Histone deacetylase 4
Which nutrients exactly 4 nutrients or chemical substances interact with
Epidermal growth factor receptor Histone deacetylase 6 Glutamate receptor ionotropic, NMDA 1
action equal
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
value 4
[[{'concept': 'nutrient'}, {'concept': 'chemical substance'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?k WHERE { FILTER ( ?n = 4 ) . { SELECT DISTINCT ( COUNT ( ?t ) AS ?n ) ?k WHERE { { ?t property:physically_interacts_with ?k . ?k rdf:type ontology:nutrient . ?t rdf:type ontology:nutrient } UNION { ?t property:physically_interacts_with ?k . ?t rdf:type ontology:chemical_substance . ?k rdf:type ontology:nutrient } } GROUP BY ?k } }
[]