Simple Question (Direct)
Simple Question
Q23591045
P681
Q15989253
USER
Which part is a component of Molybdenum ABC transporter ModC, ATP-binding protein    MAB_2435 ?
(Q23591045,P681,c(Q15989253))
action filter_type
action find
entity Q23591045
relation P681
type Q15989253
['Q23591045', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?n WHERE { resource:Q23591045 property:P681 ?n . ?n rdf:type ontology:Q15989253 }
Molybdenum ABC transporter ModC, ATP-binding protein    MAB_2435
action filter_type
action find
entity Molybdenum ABC transporter ModC, ATP-binding protein    MAB_2435
relation cell component
type part
['Molybdenum ABC transporter ModC, ATP-binding protein    MAB_2435', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?n WHERE { resource:Molybdenum_ABC_transporter_ModC,_ATP-binding_protein____MAB_2435 property:cell_component ?n . ?n rdf:type ontology:part }
[]
part
Q14349455
SYSTEM
membrane
Q14349455
(Q23591045,P681,c(Q15989253))
action filter_type
action find
entity Q23591045
relation P681
type Q15989253
[ANSWER] is a component of Molybdenum ABC transporter ModC, ATP-binding protein MAB_2435
['Q23591045', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?n WHERE { resource:Q23591045 property:P681 ?n . ?n rdf:type ontology:Q15989253 }
membrane
Membrane is a component of Molybdenum ABC transporter ModC, ATP-binding protein MAB_2435
membrane
action filter_type
action find
entity Molybdenum ABC transporter ModC, ATP-binding protein    MAB_2435
relation cell component
type part
['Molybdenum ABC transporter ModC, ATP-binding protein    MAB_2435', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?n WHERE { resource:Molybdenum_ABC_transporter_ModC,_ATP-binding_protein____MAB_2435 property:cell_component ?n . ?n rdf:type ontology:part }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23591045
P703
Q16521
USER
Which taxon is Molybdenum ABC transporter ModC, ATP-binding protein    MAB_2435 found in ?
(Q23591045,P703,c(Q16521))
action filter_type
action find
entity Q23591045
relation P703
type Q16521
['Q23591045', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:Q16521 . resource:Q23591045 property:P703 ?u }
Molybdenum ABC transporter ModC, ATP-binding protein    MAB_2435
action filter_type
action find
entity Molybdenum ABC transporter ModC, ATP-binding protein    MAB_2435
relation found in taxon
type taxon
['Molybdenum ABC transporter ModC, ATP-binding protein    MAB_2435', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:taxon . resource:Molybdenum_ABC_transporter_ModC,_ATP-binding_protein____MAB_2435 property:found_in_taxon ?u }
[]
taxon
Q6946978
SYSTEM
Mycobacterium abscessus
Q6946978
(Q23591045,P703,c(Q16521))
action filter_type
action find
entity Q23591045
relation P703
type Q16521
[ANSWER] is Molybdenum ABC transporter ModC, ATP-binding protein MAB_2435 found in
['Q23591045', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:Q16521 . resource:Q23591045 property:P703 ?u }
Mycobacterium abscessus
Mycobacterium abscessus is Molybdenum ABC transporter ModC, ATP-binding protein MAB_2435 found in
Mycobacterium abscessus
action filter_type
action find
entity Molybdenum ABC transporter ModC, ATP-binding protein    MAB_2435
relation found in taxon
type taxon
['Molybdenum ABC transporter ModC, ATP-binding protein    MAB_2435', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:taxon . resource:Molybdenum_ABC_transporter_ModC,_ATP-binding_protein____MAB_2435 property:found_in_taxon ?u }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q6946978 Q23590372
P703
Q181394
USER
Is 50S ribosomal protein L7/L12    MAB_3876c a part of the taxon that one ?
(Q23590372,P703,Q6946978)
action is_in
entity Q6946978
action find
entity Q23590372
relation P703
['Q23590372', 'P703', 'Q6946978']
ASK WHERE { resource:Q23590372 property:P703 resource:Q6946978 }
Mycobacterium abscessus 50S ribosomal protein L7/L12    MAB_3876c
action is_in
entity Mycobacterium abscessus
action find
entity 50S ribosomal protein L7/L12    MAB_3876c
relation found in taxon
['50S ribosomal protein L7/L12    MAB_3876c', 'found in taxon', 'Mycobacterium abscessus']
ASK WHERE { resource:50S_ribosomal_protein_L7/L12____MAB_3876c property:found_in_taxon resource:Mycobacterium_abscessus }
[]
nutrient
SYSTEM
YES
(Q23590372,P703,Q6946978)
action is_in
entity Q6946978
action find
entity Q23590372
relation P703
[ANSWER]
['Q23590372', 'P703', 'Q6946978']
ASK WHERE { resource:Q23590372 property:P703 resource:Q6946978 }
Yes
action is_in
entity Mycobacterium abscessus
action find
entity 50S ribosomal protein L7/L12    MAB_3876c
relation found in taxon
['50S ribosomal protein L7/L12    MAB_3876c', 'found in taxon', 'Mycobacterium abscessus']
ASK WHERE { resource:50S_ribosomal_protein_L7/L12____MAB_3876c property:found_in_taxon resource:Mycobacterium_abscessus }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q423364
Q181394
USER
And also tell me about propranolol?
(Q423364,P129,c(Q181394))
action filter_type
action find
entity Q423364
relation P129
type Q181394
['Q423364', 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?v WHERE { resource:Q423364 property:P129 ?v . ?v rdf:type ontology:Q181394 }
propranolol
action filter_type
action find
entity propranolol
relation physically interacts with
type nutrient
['propranolol', 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?v WHERE { resource:propranolol property:physically_interacts_with ?v . ?v rdf:type ontology:nutrient }
[]
nutrient
Q4897175 Q287961 Q21498865
SYSTEM
Beta-3 adrenergic receptor, Beta-2 adrenergic receptor, Beta-3 adrenergic receptor
Q4897175 Q287961 Q21498865
(Q423364,P129,c(Q181394))
action filter_type
action find
entity Q423364
relation P129
type Q181394
[ANSWERS]
['Q423364', 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?v WHERE { resource:Q423364 property:P129 ?v . ?v rdf:type ontology:Q181394 }
Beta-3 adrenergic receptor Beta-2 adrenergic receptor Beta-3 adrenergic receptor
Beta-3 adrenergic receptor Beta-2 adrenergic receptor Beta-3 adrenergic receptor
action filter_type
action find
entity propranolol
relation physically interacts with
type nutrient
['propranolol', 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?v WHERE { resource:propranolol property:physically_interacts_with ?v . ?v rdf:type ontology:nutrient }
[]
Clarification
Simple Question|Single Entity|Indirect
Q4897175
P129
Q79529
USER
What do that nutrient interact with ?
(Q4897175,P129,c(Q79529))
action filter_type
action find
entity Q4897175
relation P129
type Q79529
['Q4897175', 'P129', {'concept': 'Q79529'}]
SELECT DISTINCT ?l WHERE { resource:Q4897175 property:P129 ?l . ?l rdf:type ontology:Q79529 }
Beta-3 adrenergic receptor
action filter_type
action find
entity Beta-3 adrenergic receptor
relation physically interacts with
type chemical substance
['Beta-3 adrenergic receptor', 'physically interacts with', {'concept': 'chemical substance'}]
SELECT DISTINCT ?l WHERE { resource:Beta-3_adrenergic_receptor property:physically_interacts_with ?l . ?l rdf:type ontology:chemical_substance }
[]
chemical substance
Clarification for simple ques.
Q21498865
SYSTEM
Did you mean Beta-3 adrenergic receptor ?
Q4897175 Q287961 Q21498865
(Q4897175,P129,c(Q79529)) (Q287961,P129,c(Q79529)) (Q21498865,P129,c(Q79529))
[ANSWER]
['Q4897175', 'P129', {'concept': 'Q79529'}] ['Q287961', 'P129', {'concept': 'Q79529'}] ['Q21498865', 'P129', {'concept': 'Q79529'}]
SELECT DISTINCT ?l WHERE { resource:Q4897175 property:P129 ?l . ?l rdf:type ontology:Q79529 }
Beta-3 adrenergic receptor Beta-2 adrenergic receptor Beta-3 adrenergic receptor
Did you mean Beta-3 adrenergic receptor ?
Beta-3 adrenergic receptor
['Beta-3 adrenergic receptor', 'physically interacts with', {'concept': 'chemical substance'}] ['Beta-2 adrenergic receptor', 'physically interacts with', {'concept': 'chemical substance'}] ['Beta-3 adrenergic receptor', 'physically interacts with', {'concept': 'chemical substance'}]
SELECT DISTINCT ?l WHERE { resource:Beta-3_adrenergic_receptor property:physically_interacts_with ?l . ?l rdf:type ontology:chemical_substance }
[]
Simple Question (Coreferenced)
USER
No, I meant Beta-3 adrenergic receptor. Could you tell me the answer for that?
(Q4897175,P129,c(Q79529))
Q4897175
['Q4897175', 'P129', {'concept': 'Q79529'}]
['Beta-3 adrenergic receptor', 'physically interacts with', {'concept': 'chemical substance'}]
[]
Q7705238 Q4746121 Q7392878
SYSTEM
tertatolol, amibegron, SR59230A
Q7705238 Q4746121 Q7392878
(Q4897175,P129,c(Q79529))
action filter_type
action find
entity Q4897175
relation P129
type Q79529
That nutrient interact with [ANSWERS]
['Q4897175', 'P129', {'concept': 'Q79529'}]
SELECT DISTINCT ?l WHERE { resource:Q4897175 property:P129 ?l . ?l rdf:type ontology:Q79529 }
tertatolol amibegron SR59230A
That nutrient interact with tertatolol, amibegron and SR59230A
tertatolol amibegron SR59230A
action filter_type
action find
entity Beta-3 adrenergic receptor
relation physically interacts with
type chemical substance
['Beta-3 adrenergic receptor', 'physically interacts with', {'concept': 'chemical substance'}]
SELECT DISTINCT ?l WHERE { resource:Beta-3_adrenergic_receptor property:physically_interacts_with ?l . ?l rdf:type ontology:chemical_substance }
[]
Simple Question (Direct)
Simple Question|Mult. Entity|Indirect
Q7705238 Q4746121 Q7392878
P129
Q181394
USER
Which nutrients do tertatolol, amibegron and SR59230A communicate with ?
(Q7705238,P129,c(Q181394)) (Q4746121,P129,c(Q181394)) (Q7392878,P129,c(Q181394))
action union
action filter_type
action find
entity Q7705238
relation P129
type Q181394
action filter_type
action find
entity Q4746121
relation P129
type Q181394
action filter_type
action find
entity Q7392878
relation P129
type Q181394
['Q7705238', 'P129', {'concept': 'Q181394'}] ['Q4746121', 'P129', {'concept': 'Q181394'}] ['Q7392878', 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?p WHERE { { ?p rdf:type ontology:Q181394 . resource:Q4746121 property:P129 ?p } UNION { ?p rdf:type ontology:Q181394 . resource:Q7705238 property:P129 ?p } }
tertatolol amibegron SR59230A
action union
action filter_type
action find
entity tertatolol
relation physically interacts with
type nutrient
action filter_type
action find
entity amibegron
relation physically interacts with
type nutrient
action filter_type
action find
entity SR59230A
relation physically interacts with
type nutrient
['tertatolol', 'physically interacts with', {'concept': 'nutrient'}] ['amibegron', 'physically interacts with', {'concept': 'nutrient'}] ['SR59230A', 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?p WHERE { { ?p rdf:type ontology:nutrient . resource:amibegron property:physically_interacts_with ?p } UNION { ?p rdf:type ontology:nutrient . resource:tertatolol property:physically_interacts_with ?p } }
[]
nutrient
Q287961 Q287958 Q4897175
SYSTEM
Beta-2 adrenergic receptor, Beta-1 adrenergic receptor, Beta-3 adrenergic receptor
Q4897175 Q21498865 Q4897175 Q287961 Q4897175 Q287958
(Q7705238,P129,c(Q181394)) (Q4746121,P129,c(Q181394)) (Q7392878,P129,c(Q181394))
action union
action filter_type
action find
entity Q7705238
relation P129
type Q181394
action filter_type
action find
entity Q4746121
relation P129
type Q181394
action filter_type
action find
entity Q7392878
relation P129
type Q181394
Tertatolol , amibegron and SR59230A communicate with [ANSWERS]
['Q7705238', 'P129', {'concept': 'Q181394'}] ['Q4746121', 'P129', {'concept': 'Q181394'}] ['Q7392878', 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?p WHERE { { ?p rdf:type ontology:Q181394 . resource:Q4746121 property:P129 ?p } UNION { ?p rdf:type ontology:Q181394 . resource:Q7705238 property:P129 ?p } }
Beta-3 adrenergic receptor Beta-3 adrenergic receptor Beta-3 adrenergic receptor Beta-2 adrenergic receptor Beta-3 adrenergic receptor Beta-1 adrenergic receptor
Tertatolol , amibegron and SR59230A communicate with Beta-2 adrenergic receptor, Beta-1 adrenergic receptor and Beta-3 adrenergic receptor
Beta-2 adrenergic receptor Beta-1 adrenergic receptor Beta-3 adrenergic receptor
action union
action filter_type
action find
entity tertatolol
relation physically interacts with
type nutrient
action filter_type
action find
entity amibegron
relation physically interacts with
type nutrient
action filter_type
action find
entity SR59230A
relation physically interacts with
type nutrient
['tertatolol', 'physically interacts with', {'concept': 'nutrient'}] ['amibegron', 'physically interacts with', {'concept': 'nutrient'}] ['SR59230A', 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?p WHERE { { ?p rdf:type ontology:nutrient . resource:amibegron property:physically_interacts_with ?p } UNION { ?p rdf:type ontology:nutrient . resource:tertatolol property:physically_interacts_with ?p } }
[]
Clarification
Simple Question|Single Entity|Indirect
Q4897175
P682
Q1057
USER
What are the metabolic processes that that nutrient are involved in ?
(Q4897175,P682,c(Q1057))
action filter_type
action find
entity Q4897175
relation P682
type Q1057
['Q4897175', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?z WHERE { resource:Q4897175 property:P682 ?z . ?z rdf:type ontology:Q1057 }
Beta-3 adrenergic receptor
action filter_type
action find
entity Beta-3 adrenergic receptor
relation biological process
type metabolic process
['Beta-3 adrenergic receptor', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?z WHERE { resource:Beta-3_adrenergic_receptor property:biological_process ?z . ?z rdf:type ontology:metabolic_process }
[]
metabolic process
Clarification for simple ques.
Q287961
SYSTEM
Did you mean Beta-2 adrenergic receptor ?
Q287961 Q287958 Q4897175
(Q287961,P682,c(Q1057)) (Q287958,P682,c(Q1057)) (Q4897175,P682,c(Q1057))
[ANSWER]
['Q287961', 'P682', {'concept': 'Q1057'}] ['Q287958', 'P682', {'concept': 'Q1057'}] ['Q4897175', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?z WHERE { resource:Q4897175 property:P682 ?z . ?z rdf:type ontology:Q1057 }
Beta-2 adrenergic receptor Beta-1 adrenergic receptor Beta-3 adrenergic receptor
Did you mean Beta-2 adrenergic receptor ?
Beta-2 adrenergic receptor
['Beta-2 adrenergic receptor', 'biological process', {'concept': 'metabolic process'}] ['Beta-1 adrenergic receptor', 'biological process', {'concept': 'metabolic process'}] ['Beta-3 adrenergic receptor', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?z WHERE { resource:Beta-3_adrenergic_receptor property:biological_process ?z . ?z rdf:type ontology:metabolic_process }
[]
Simple Question (Coreferenced)
USER
No, I meant Beta-3 adrenergic receptor. Could you tell me the answer for that?
(Q4897175,P682,c(Q1057))
Q4897175
['Q4897175', 'P682', {'concept': 'Q1057'}]
['Beta-3 adrenergic receptor', 'biological process', {'concept': 'metabolic process'}]
[]
Q14762260 Q14819781
SYSTEM
carbohydrate metabolic process, generation of precursor metabolites and energy
Q14762260 Q14819781
(Q4897175,P682,c(Q1057))
action filter_type
action find
entity Q4897175
relation P682
type Q1057
The metabolic processes that nutrient are involved in are [ANSWERS]
['Q4897175', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?z WHERE { resource:Q4897175 property:P682 ?z . ?z rdf:type ontology:Q1057 }
carbohydrate metabolic process generation of precursor metabolites and energy
The metabolic processes that nutrient are involved in are carbohydrate metabolic process and generation of precursor metabolites and energy
carbohydrate metabolic process generation of precursor metabolites and energy
action filter_type
action find
entity Beta-3 adrenergic receptor
relation biological process
type metabolic process
['Beta-3 adrenergic receptor', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?z WHERE { resource:Beta-3_adrenergic_receptor property:biological_process ?z . ?z rdf:type ontology:metabolic_process }
[]
Verification (Boolean) (All)
Verification|one entity, multiple entities (as object) referred indirectly
Q21122509
P682
Q181394
USER
Are Phosphorylase b kinase gamma catalytic chain, liver/testis isoform involved in those metabolic processes ?
(Q21122509,P682,Q14762260) (Q21122509,P682,Q14819781)
action is_in
entity prev_answer
action find
entity Q21122509
relation P682
['Q21122509', 'P682', 'Q14762260'] ['Q21122509', 'P682', 'Q14819781']
ASK WHERE { VALUES ( ?v ) { ( resource:Q14762260 ) ( resource:Q14819781 ) } . resource:Q21122509 property:P682 ?v }
Phosphorylase b kinase gamma catalytic chain, liver/testis isoform
action is_in
entity prev_answer
action find
entity Phosphorylase b kinase gamma catalytic chain, liver/testis isoform
relation biological process
['Phosphorylase b kinase gamma catalytic chain, liver/testis isoform', 'biological process', 'carbohydrate metabolic process'] ['Phosphorylase b kinase gamma catalytic chain, liver/testis isoform', 'biological process', 'generation of precursor metabolites and energy']
ASK WHERE { VALUES ( ?v ) { ( resource:carbohydrate_metabolic_process ) ( resource:generation_of_precursor_metabolites_and_energy ) } . resource:Phosphorylase_b_kinase_gamma_catalytic_chain,_liver/testis_isoform property:biological_process ?v }
[]
nutrient
SYSTEM
YES
(Q21122509,P682,Q14762260) (Q21122509,P682,Q14819781)
action is_in
entity prev_answer
action find
entity Q21122509
relation P682
[ANSWER]
['Q21122509', 'P682', 'Q14762260'] ['Q21122509', 'P682', 'Q14819781']
ASK WHERE { VALUES ( ?v ) { ( resource:Q14762260 ) ( resource:Q14819781 ) } . resource:Q21122509 property:P682 ?v }
Yes
action is_in
entity prev_answer
action find
entity Phosphorylase b kinase gamma catalytic chain, liver/testis isoform
relation biological process
['Phosphorylase b kinase gamma catalytic chain, liver/testis isoform', 'biological process', 'carbohydrate metabolic process'] ['Phosphorylase b kinase gamma catalytic chain, liver/testis isoform', 'biological process', 'generation of precursor metabolites and energy']
ASK WHERE { VALUES ( ?v ) { ( resource:carbohydrate_metabolic_process ) ( resource:generation_of_precursor_metabolites_and_energy ) } . resource:Phosphorylase_b_kinase_gamma_catalytic_chain,_liver/testis_isoform property:biological_process ?v }
[]