Simple Question (Direct)
Simple Question
Q21748805
P703
Q16521
USER
Which taxon is acyl-CoA dehydrogenase    PA1535 found in ?
(Q21748805,P703,c(Q16521))
action filter_type
action find
entity Q21748805
relation P703
type Q16521
['Q21748805', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?k WHERE { resource:Q21748805 property:P703 ?k . ?k rdf:type ontology:Q16521 }
acyl-CoA dehydrogenase    PA1535
action filter_type
action find
entity acyl-CoA dehydrogenase    PA1535
relation found in taxon
type taxon
['acyl-CoA dehydrogenase    PA1535', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?k WHERE { resource:acyl-CoA_dehydrogenase____PA1535 property:found_in_taxon ?k . ?k rdf:type ontology:taxon }
[]
taxon
Q21065234
SYSTEM
Pseudomonas aeruginosa PAO1
Q21065234
(Q21748805,P703,c(Q16521))
action filter_type
action find
entity Q21748805
relation P703
type Q16521
Species [ANSWER] is acyl-CoA dehydrogenase PA1535 found in
['Q21748805', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?k WHERE { resource:Q21748805 property:P703 ?k . ?k rdf:type ontology:Q16521 }
Pseudomonas aeruginosa PAO1
Species Pseudomonas aeruginosa PAO1 is acyl-CoA dehydrogenase PA1535 found in
Pseudomonas aeruginosa PAO1
action filter_type
action find
entity acyl-CoA dehydrogenase    PA1535
relation found in taxon
type taxon
['acyl-CoA dehydrogenase    PA1535', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?k WHERE { resource:acyl-CoA_dehydrogenase____PA1535 property:found_in_taxon ?k . ?k rdf:type ontology:taxon }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21748805
P688
Q863908
USER
What is the nucleic acid sequence that is encoded by acyl-CoA dehydrogenase    PA1535 ?
(c(Q863908),P688,Q21748805)
action filter_type
action find_reverse
entity Q21748805
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q21748805']
SELECT DISTINCT ?f WHERE { ?f property:P688 resource:Q21748805 . ?f rdf:type ontology:Q863908 }
acyl-CoA dehydrogenase    PA1535
action filter_type
action find_reverse
entity acyl-CoA dehydrogenase    PA1535
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'acyl-CoA dehydrogenase    PA1535']
SELECT DISTINCT ?f WHERE { ?f property:encodes resource:acyl-CoA_dehydrogenase____PA1535 . ?f rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q21624636
SYSTEM
acyl-CoA dehydrogenase    PA1535
Q21624636
(c(Q863908),P688,Q21748805)
action filter_type
action find_reverse
entity Q21748805
relation P688
type Q863908
The nucleic acid sequence that is encoded by acyl-CoA dehydrogenase PA 1535 is of acyl-CoA dehydrogenase PA1535
[{'concept': 'Q863908'}, 'P688', 'Q21748805']
SELECT DISTINCT ?f WHERE { ?f property:P688 resource:Q21748805 . ?f rdf:type ontology:Q863908 }
acyl-CoA dehydrogenase    PA1535
The nucleic acid sequence that is encoded by acyl-CoA dehydrogenase PA 1535 is of acyl-CoA dehydrogenase PA1535
acyl-CoA dehydrogenase    PA1535
action filter_type
action find_reverse
entity acyl-CoA dehydrogenase    PA1535
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'acyl-CoA dehydrogenase    PA1535']
SELECT DISTINCT ?f WHERE { ?f property:encodes resource:acyl-CoA_dehydrogenase____PA1535 . ?f rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21748805
P702
Q863908
USER
What encodes acyl-CoA dehydrogenase    PA1535 ?
(Q21748805,P702,c(Q863908))
action filter_type
action find
entity Q21748805
relation P702
type Q863908
['Q21748805', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?r WHERE { ?r rdf:type ontology:Q863908 . resource:Q21748805 property:P702 ?r }
acyl-CoA dehydrogenase    PA1535
action filter_type
action find
entity acyl-CoA dehydrogenase    PA1535
relation encoded by
type nucleic acid sequence
['acyl-CoA dehydrogenase    PA1535', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?r WHERE { ?r rdf:type ontology:nucleic_acid_sequence . resource:acyl-CoA_dehydrogenase____PA1535 property:encoded_by ?r }
[]
nucleic acid sequence
Q21624636
SYSTEM
acyl-CoA dehydrogenase    PA1535
Q21624636
(Q21748805,P702,c(Q863908))
action filter_type
action find
entity Q21748805
relation P702
type Q863908
Acyl-CoA dehydrogenase PA1535 encodes acyl-CoA dehydrogenase PA1535
['Q21748805', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?r WHERE { ?r rdf:type ontology:Q863908 . resource:Q21748805 property:P702 ?r }
acyl-CoA dehydrogenase    PA1535
Acyl-CoA dehydrogenase PA1535 encodes acyl-CoA dehydrogenase PA1535
acyl-CoA dehydrogenase    PA1535
action filter_type
action find
entity acyl-CoA dehydrogenase    PA1535
relation encoded by
type nucleic acid sequence
['acyl-CoA dehydrogenase    PA1535', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?r WHERE { ?r rdf:type ontology:nucleic_acid_sequence . resource:acyl-CoA_dehydrogenase____PA1535 property:encoded_by ?r }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q21604746
Q863908
USER
And what about integral membrane protein    BB_0580?
(Q21604746,P702,c(Q863908))
action filter_type
action find
entity Q21604746
relation P702
type Q863908
['Q21604746', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?u WHERE { resource:Q21604746 property:P702 ?u . ?u rdf:type ontology:Q863908 }
integral membrane protein    BB_0580
action filter_type
action find
entity integral membrane protein    BB_0580
relation encoded by
type nucleic acid sequence
['integral membrane protein    BB_0580', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?u WHERE { resource:integral_membrane_protein____BB_0580 property:encoded_by ?u . ?u rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q21602889
SYSTEM
integral membrane protein    BB_0580
Q21602889
(Q21604746,P702,c(Q863908))
action filter_type
action find
entity Q21604746
relation P702
type Q863908
[ANSWER]
['Q21604746', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?u WHERE { resource:Q21604746 property:P702 ?u . ?u rdf:type ontology:Q863908 }
integral membrane protein    BB_0580
integral membrane protein    BB_0580
action filter_type
action find
entity integral membrane protein    BB_0580
relation encoded by
type nucleic acid sequence
['integral membrane protein    BB_0580', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?u WHERE { resource:integral_membrane_protein____BB_0580 property:encoded_by ?u . ?u rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q21602889 Q21604746
P688
Q181394
USER
Does integral membrane protein    BB_0580 encode integral membrane protein    BB_0580 ?
(Q21602889,P688,Q21604746)
action is_in
entity Q21604746
action find
entity Q21602889
relation P688
['Q21602889', 'P688', 'Q21604746']
ASK WHERE { resource:Q21602889 property:P688 resource:Q21604746 }
integral membrane protein    BB_0580 integral membrane protein    BB_0580
action is_in
entity integral membrane protein    BB_0580
action find
entity integral membrane protein    BB_0580
relation encodes
['integral membrane protein    BB_0580', 'encodes', 'integral membrane protein    BB_0580']
ASK WHERE { resource:integral_membrane_protein____BB_0580 property:encodes resource:integral_membrane_protein____BB_0580 }
[]
nutrient
SYSTEM
YES
(Q21602889,P688,Q21604746)
action is_in
entity Q21604746
action find
entity Q21602889
relation P688
[ANSWER]
['Q21602889', 'P688', 'Q21604746']
ASK WHERE { resource:Q21602889 property:P688 resource:Q21604746 }
Yes
action is_in
entity integral membrane protein    BB_0580
action find
entity integral membrane protein    BB_0580
relation encodes
['integral membrane protein    BB_0580', 'encodes', 'integral membrane protein    BB_0580']
ASK WHERE { resource:integral_membrane_protein____BB_0580 property:encodes resource:integral_membrane_protein____BB_0580 }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q23324850
Q181394
USER
And how about glycosyl transferase, group 2 family protein    DVUA0080?
(Q23324850,P688,c(Q181394))
action filter_type
action find
entity Q23324850
relation P688
type Q181394
['Q23324850', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?p WHERE { ?p rdf:type ontology:Q181394 . resource:Q23324850 property:P688 ?p }
glycosyl transferase, group 2 family protein    DVUA0080
action filter_type
action find
entity glycosyl transferase, group 2 family protein    DVUA0080
relation encodes
type nutrient
['glycosyl transferase, group 2 family protein    DVUA0080', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?p WHERE { ?p rdf:type ontology:nutrient . resource:glycosyl_transferase,_group_2_family_protein____DVUA0080 property:encodes ?p }
[]
nutrient
Q23462762
SYSTEM
glycosyl transferase, group 2 family protein    DVUA0080
Q23462762
(Q23324850,P688,c(Q181394))
action filter_type
action find
entity Q23324850
relation P688
type Q181394
[ANSWER]
['Q23324850', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?p WHERE { ?p rdf:type ontology:Q181394 . resource:Q23324850 property:P688 ?p }
glycosyl transferase, group 2 family protein    DVUA0080
glycosyl transferase, group 2 family protein    DVUA0080
action filter_type
action find
entity glycosyl transferase, group 2 family protein    DVUA0080
relation encodes
type nutrient
['glycosyl transferase, group 2 family protein    DVUA0080', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?p WHERE { ?p rdf:type ontology:nutrient . resource:glycosyl_transferase,_group_2_family_protein____DVUA0080 property:encodes ?p }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type|Indirect
P688
Q863908
USER
How many nucleic acid sequences encode that nutrient ?
(c(Q863908),P688,Q23462762)
action count
action filter_type
action find_reverse
entity Q23462762
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q23462762']
SELECT DISTINCT ( COUNT ( ?f ) AS ?w ) WHERE { ?f property:P688 resource:Q23462762 . ?f rdf:type ontology:Q863908 }
action count
action filter_type
action find_reverse
entity glycosyl transferase, group 2 family protein    DVUA0080
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'glycosyl transferase, group 2 family protein    DVUA0080']
SELECT DISTINCT ( COUNT ( ?f ) AS ?w ) WHERE { ?f property:encodes resource:glycosyl_transferase,_group_2_family_protein____DVUA0080 . ?f rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
SYSTEM
1
Q23324850
(c(Q863908),P688,Q23462762)
action count
action filter_type
action find_reverse
entity Q23462762
relation P688
type Q863908
[ANSWER]
[{'concept': 'Q863908'}, 'P688', 'Q23462762']
SELECT DISTINCT ( COUNT ( ?f ) AS ?w ) WHERE { ?f property:P688 resource:Q23462762 . ?f rdf:type ontology:Q863908 }
glycosyl transferase, group 2 family protein    DVUA0080
1
action count
action filter_type
action find_reverse
entity glycosyl transferase, group 2 family protein    DVUA0080
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'glycosyl transferase, group 2 family protein    DVUA0080']
SELECT DISTINCT ( COUNT ( ?f ) AS ?w ) WHERE { ?f property:encodes resource:glycosyl_transferase,_group_2_family_protein____DVUA0080 . ?f rdf:type ontology:nucleic_acid_sequence }
[]