Simple Question (Direct)
Simple Question
Q21988945
P681
Q15989253
USER
Which parts are the components of 26S protease regulatory subunit 7 ?
(Q21988945,P681,c(Q15989253))
action filter_type
action find
entity Q21988945
relation P681
type Q15989253
['Q21988945', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?k WHERE { resource:Q21988945 property:P681 ?k . ?k rdf:type ontology:Q15989253 }
26S protease regulatory subunit 7
action filter_type
action find
entity 26S protease regulatory subunit 7
relation cell component
type part
['26S protease regulatory subunit 7', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?k WHERE { resource:26S_protease_regulatory_subunit_7 property:cell_component ?k . ?k rdf:type ontology:part }
[]
part
Q79899 Q40260 Q14349455
SYSTEM
cytoplasm, nucleus, membrane
Q79899 Q40260 Q14349455
(Q21988945,P681,c(Q15989253))
action filter_type
action find
entity Q21988945
relation P681
type Q15989253
[ANSWERS] are the components of 26S protease regulatory subunit 7
['Q21988945', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?k WHERE { resource:Q21988945 property:P681 ?k . ?k rdf:type ontology:Q15989253 }
cytoplasm nucleus membrane
Cytoplasm, nucleus and membrane are the components of 26S protease regulatory subunit 7
cytoplasm nucleus membrane
action filter_type
action find
entity 26S protease regulatory subunit 7
relation cell component
type part
['26S protease regulatory subunit 7', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?k WHERE { resource:26S_protease_regulatory_subunit_7 property:cell_component ?k . ?k rdf:type ontology:part }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21988945
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(c(Q863908),P688,Q79899) (c(Q863908),P688,Q40260) (c(Q863908),P688,Q14349455)
action filter_type
action find_reverse
entity Q21988945
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q79899'] [{'concept': 'Q863908'}, 'P688', 'Q40260'] [{'concept': 'Q863908'}, 'P688', 'Q14349455']
SELECT DISTINCT ?u WHERE { ?u property:P688 resource:Q21988945 . ?u rdf:type ontology:Q863908 }
26S protease regulatory subunit 7
action filter_type
action find_reverse
entity 26S protease regulatory subunit 7
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'cytoplasm'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'nucleus'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'membrane']
SELECT DISTINCT ?u WHERE { ?u property:encodes resource:26S_protease_regulatory_subunit_7 . ?u rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18253285
SYSTEM
Psmc2
Q18253285
(c(Q863908),P688,Q79899) (c(Q863908),P688,Q40260) (c(Q863908),P688,Q14349455)
action filter_type
action find_reverse
entity Q21988945
relation P688
type Q863908
[ANSWER] encodes that nutrient
[{'concept': 'Q863908'}, 'P688', 'Q79899'] [{'concept': 'Q863908'}, 'P688', 'Q40260'] [{'concept': 'Q863908'}, 'P688', 'Q14349455']
SELECT DISTINCT ?u WHERE { ?u property:P688 resource:Q21988945 . ?u rdf:type ontology:Q863908 }
Psmc2
Psmc2 encodes that nutrient
Psmc2
action filter_type
action find_reverse
entity 26S protease regulatory subunit 7
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'cytoplasm'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'nucleus'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'membrane']
SELECT DISTINCT ?u WHERE { ?u property:encodes resource:26S_protease_regulatory_subunit_7 . ?u rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18253285
P702
Q181394
USER
What is encoded by that nucleic acid sequence ?
(c(Q181394),P702,Q18253285)
action filter_type
action find_reverse
entity Q18253285
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q18253285']
SELECT DISTINCT ?d WHERE { ?d property:P702 resource:Q18253285 . ?d rdf:type ontology:Q181394 }
Psmc2
action filter_type
action find_reverse
entity Psmc2
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'Psmc2']
SELECT DISTINCT ?d WHERE { ?d property:encoded_by resource:Psmc2 . ?d rdf:type ontology:nutrient }
[]
nutrient
Q21988945
SYSTEM
26S protease regulatory subunit 7
Q21988945
(c(Q181394),P702,Q18253285)
action filter_type
action find_reverse
entity Q18253285
relation P702
type Q181394
The [ANSWER] is encoded by that nucleic acid sequence
[{'concept': 'Q181394'}, 'P702', 'Q18253285']
SELECT DISTINCT ?d WHERE { ?d property:P702 resource:Q18253285 . ?d rdf:type ontology:Q181394 }
26S protease regulatory subunit 7
The 26S protease regulatory subunit 7 is encoded by that nucleic acid sequence
26S protease regulatory subunit 7
action filter_type
action find_reverse
entity Psmc2
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'Psmc2']
SELECT DISTINCT ?d WHERE { ?d property:encoded_by resource:Psmc2 . ?d rdf:type ontology:nutrient }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation|Incomplete
Q23143494 Q18253285
P702
Q181394
USER
Or hypothetical protein    ECUMN_1160?
OR((c(Q181394),P702,Q18253285), (c(Q181394),P702,Q23143494))
action filter_type
action union
action find_reverse
entity Q18253285
relation P702
action find_reverse
entity Q23143494
relation P702
type Q181394
{'OR': [[{'concept': 'Q181394'}, 'P702', 'Q18253285'], [{'concept': 'Q181394'}, 'P702', 'Q23143494']]}
SELECT DISTINCT ?r WHERE { { ?r property:P702 ?f . VALUES ( ?f ) { ( resource:Q18253285 ) ( resource:Q23143494 ) } } . ?r rdf:type ontology:Q181394 }
hypothetical protein    ECUMN_1160 Psmc2
action filter_type
action union
action find_reverse
entity Psmc2
relation encoded by
action find_reverse
entity hypothetical protein    ECUMN_1160
relation encoded by
type nutrient
{'OR': [[{'concept': 'nutrient'}, 'encoded by', 'Psmc2'], [{'concept': 'nutrient'}, 'encoded by', 'hypothetical protein    ECUMN_1160']]}
SELECT DISTINCT ?r WHERE { { ?r property:encoded_by ?f . VALUES ( ?f ) { ( resource:Psmc2 ) ( resource:hypothetical_protein____ECUMN_1160 ) } } . ?r rdf:type ontology:nutrient }
[]
nutrient
Q24147647 Q21988945
SYSTEM
hypothetical protein    ECUMN_1160, 26S protease regulatory subunit 7
Q24147647 Q21988945
OR((c(Q181394),P702,Q18253285), (c(Q181394),P702,Q23143494))
action filter_type
action union
action find_reverse
entity Q18253285
relation P702
action find_reverse
entity Q23143494
relation P702
type Q181394
[ANSWERS]
{'OR': [[{'concept': 'Q181394'}, 'P702', 'Q18253285'], [{'concept': 'Q181394'}, 'P702', 'Q23143494']]}
SELECT DISTINCT ?r WHERE { { ?r property:P702 ?f . VALUES ( ?f ) { ( resource:Q18253285 ) ( resource:Q23143494 ) } } . ?r rdf:type ontology:Q181394 }
hypothetical protein    ECUMN_1160 26S protease regulatory subunit 7
hypothetical protein    ECUMN_1160 26S protease regulatory subunit 7
action filter_type
action union
action find_reverse
entity Psmc2
relation encoded by
action find_reverse
entity hypothetical protein    ECUMN_1160
relation encoded by
type nutrient
{'OR': [[{'concept': 'nutrient'}, 'encoded by', 'Psmc2'], [{'concept': 'nutrient'}, 'encoded by', 'hypothetical protein    ECUMN_1160']]}
SELECT DISTINCT ?r WHERE { { ?r property:encoded_by ?f . VALUES ( ?f ) { ( resource:Psmc2 ) ( resource:hypothetical_protein____ECUMN_1160 ) } } . ?r rdf:type ontology:nutrient }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23143494
P703
Q631147
USER
Where is hypothetical protein    ECUMN_1160 found?
(Q24147647,P703,c(Q631147)) (Q21988945,P703,c(Q631147))
action filter_type
action find
entity Q23143494
relation P703
type Q631147
['Q24147647', 'P703', {'concept': 'Q631147'}] ['Q21988945', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?l WHERE { ?l rdf:type ontology:Q631147 . resource:Q23143494 property:P703 ?l }
hypothetical protein    ECUMN_1160
action filter_type
action find
entity hypothetical protein    ECUMN_1160
relation found in taxon
type infraspecific name
['hypothetical protein    ECUMN_1160', 'found in taxon', {'concept': 'infraspecific name'}] ['26S protease regulatory subunit 7', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?l WHERE { ?l rdf:type ontology:infraspecific_name . resource:hypothetical_protein____ECUMN_1160 property:found_in_taxon ?l }
[]
infraspecific name
Q21102931
SYSTEM
Escherichia coli UMN026
Q21102931
(Q24147647,P703,c(Q631147)) (Q21988945,P703,c(Q631147))
action filter_type
action find
entity Q23143494
relation P703
type Q631147
Hypothetical protein ECUMN _1160 is found in [ANSWER]
['Q24147647', 'P703', {'concept': 'Q631147'}] ['Q21988945', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?l WHERE { ?l rdf:type ontology:Q631147 . resource:Q23143494 property:P703 ?l }
Escherichia coli UMN026
Hypothetical protein ECUMN _1160 is found in Escherichia coli UMN026
Escherichia coli UMN026
action filter_type
action find
entity hypothetical protein    ECUMN_1160
relation found in taxon
type infraspecific name
['hypothetical protein    ECUMN_1160', 'found in taxon', {'concept': 'infraspecific name'}] ['26S protease regulatory subunit 7', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?l WHERE { ?l rdf:type ontology:infraspecific_name . resource:hypothetical_protein____ECUMN_1160 property:found_in_taxon ?l }
[]
Comparative Reasoning (All)
Comparative|More/Less|Mult. entity type|Indirect
P703
Q631147 Q181394 Q863908
USER
Which infraspecific names are greater number of nutrients and nucleic acid sequences found than that infraspecific name ?
(c(Q181394)|c(Q863908),P703,c(Q631147))
action greater
action union
action find_reverse_tuple_counts
relation P703
type Q631147
type Q181394
action find_reverse_tuple_counts
relation P703
type Q631147
type Q863908
action count
action filter_multi_types
action find_reverse
entity Q21102931
relation P703
type Q181394
type Q863908
[[{'concept': 'Q181394'}, {'concept': 'Q863908'}], 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?t WHERE { { SELECT DISTINCT ?t ( COUNT ( ?d ) AS ?i ) WHERE { VALUES ( ?u ) { ( ontology:Q181394 ) ( ontology:Q863908 ) } . ?d rdf:type ?u } GROUP BY ?t } . { SELECT DISTINCT ( COUNT ( ?x ) AS ?e ) WHERE { { ?x rdf:type ?j . VALUES ( ?j ) { ( ontology:Q181394 ) ( ontology:Q863908 ) } } . ?x property:P703 resource:Q21102931 } } . FILTER ( ?i > ?e ) }
action greater
action union
action find_reverse_tuple_counts
relation found in taxon
type infraspecific name
type nutrient
action find_reverse_tuple_counts
relation found in taxon
type infraspecific name
type nucleic acid sequence
action count
action filter_multi_types
action find_reverse
entity Escherichia coli UMN026
relation found in taxon
type nutrient
type nucleic acid sequence
[[{'concept': 'nutrient'}, {'concept': 'nucleic acid sequence'}], 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?t WHERE { { SELECT DISTINCT ?t ( COUNT ( ?d ) AS ?i ) WHERE { VALUES ( ?u ) { ( ontology:nutrient ) ( ontology:nucleic_acid_sequence ) } . ?d rdf:type ?u } GROUP BY ?t } . { SELECT DISTINCT ( COUNT ( ?x ) AS ?e ) WHERE { { ?x rdf:type ?j . VALUES ( ?j ) { ( ontology:nutrient ) ( ontology:nucleic_acid_sequence ) } } . ?x property:found_in_taxon resource:Escherichia_coli_UMN026 } } . FILTER ( ?i > ?e ) }
[]
infraspecific name nutrient nucleic acid sequence
Q21102995 Q21102998 Q27510868
SYSTEM
Burkholderia pseudomallei K96243, Amycolatopsis mediterranei U32, Saccharomyces cerevisiae S288c
Q21102995 Q21102998 Q27510868 Q21079489 Q21102930 Q21102927 Q21102986 Q21102928 Q21102918 Q21102988 Q21079490 Q23309229 Q21102972 Q21102970 Q21102937 Q21102939
(c(Q181394)|c(Q863908),P703,c(Q631147))
action greater
action union
action find_reverse_tuple_counts
relation P703
type Q631147
type Q181394
action find_reverse_tuple_counts
relation P703
type Q631147
type Q863908
action count
action filter_multi_types
action find_reverse
entity Q21102931
relation P703
type Q181394
type Q863908
[ANSWERS] are greater number of nutrients and nucleic acid sequences found than that infraspecific name
[[{'concept': 'Q181394'}, {'concept': 'Q863908'}], 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?t WHERE { { SELECT DISTINCT ?t ( COUNT ( ?d ) AS ?i ) WHERE { VALUES ( ?u ) { ( ontology:Q181394 ) ( ontology:Q863908 ) } . ?d rdf:type ?u } GROUP BY ?t } . { SELECT DISTINCT ( COUNT ( ?x ) AS ?e ) WHERE { { ?x rdf:type ?j . VALUES ( ?j ) { ( ontology:Q181394 ) ( ontology:Q863908 ) } } . ?x property:P703 resource:Q21102931 } } . FILTER ( ?i > ?e ) }
Burkholderia pseudomallei K96243 Amycolatopsis mediterranei U32 Saccharomyces cerevisiae S288c Pseudomonas putida KT2440 Escherichia coli O157:H7 str. Sakai Enterobacter aerogenes KCTC 2190 Mycobacterium smegmatis str. MC2 155 Enterobacter cloacae subsp. cloacae ATCC 13047 Sinorhizobium meliloti 1021 Streptomyces coelicolor A3(2) Pseudomonas syringae pv. syringae B728a Sinorhizobium fredii NGR234 Bacillus thuringiensis serovar konkukian str. 97-27 Bacillus cereus ATCC 14579 Escherichia coli O104:H4 str. 2011C-3493 Klebsiella pneumoniae subsp. pneumoniae HS11286
Burkholderia pseudomallei K96243, Amycolatopsis mediterranei U32 and Saccharomyces cerevisiae S288c are greater number of nutrients and nucleic acid sequences found than that infraspecific name
Burkholderia pseudomallei K96243 Amycolatopsis mediterranei U32 Saccharomyces cerevisiae S288c
action greater
action union
action find_reverse_tuple_counts
relation found in taxon
type infraspecific name
type nutrient
action find_reverse_tuple_counts
relation found in taxon
type infraspecific name
type nucleic acid sequence
action count
action filter_multi_types
action find_reverse
entity Escherichia coli UMN026
relation found in taxon
type nutrient
type nucleic acid sequence
[[{'concept': 'nutrient'}, {'concept': 'nucleic acid sequence'}], 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?t WHERE { { SELECT DISTINCT ?t ( COUNT ( ?d ) AS ?i ) WHERE { VALUES ( ?u ) { ( ontology:nutrient ) ( ontology:nucleic_acid_sequence ) } . ?d rdf:type ?u } GROUP BY ?t } . { SELECT DISTINCT ( COUNT ( ?x ) AS ?e ) WHERE { { ?x rdf:type ?j . VALUES ( ?j ) { ( ontology:nutrient ) ( ontology:nucleic_acid_sequence ) } } . ?x property:found_in_taxon resource:Escherichia_coli_UMN026 } } . FILTER ( ?i > ?e ) }
[]