Simple Question (Direct)
Simple Question
Q23512765
P680
Q44424
USER
What represents the molecular function of threonyl-tRNA synthetase    BC4576 ?
(Q23512765,P680,c(Q44424))
action filter_type
action find
entity Q23512765
relation P680
type Q44424
['Q23512765', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?g WHERE { resource:Q23512765 property:P680 ?g . ?g rdf:type ontology:Q44424 }
threonyl-tRNA synthetase    BC4576
action filter_type
action find
entity threonyl-tRNA synthetase    BC4576
relation molecular function
type chemical bond
['threonyl-tRNA synthetase    BC4576', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?g WHERE { resource:threonyl-tRNA_synthetase____BC4576 property:molecular_function ?g . ?g rdf:type ontology:chemical_bond }
[]
chemical bond
Q13667380
SYSTEM
metal ion binding
Q13667380
(Q23512765,P680,c(Q44424))
action filter_type
action find
entity Q23512765
relation P680
type Q44424
The [ANSWER] represents the molecular function of threonyl-tRNA synthetase BC4576
['Q23512765', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?g WHERE { resource:Q23512765 property:P680 ?g . ?g rdf:type ontology:Q44424 }
metal ion binding
The metal ion binding represents the molecular function of threonyl-tRNA synthetase BC4576
metal ion binding
action filter_type
action find
entity threonyl-tRNA synthetase    BC4576
relation molecular function
type chemical bond
['threonyl-tRNA synthetase    BC4576', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?g WHERE { resource:threonyl-tRNA_synthetase____BC4576 property:molecular_function ?g . ?g rdf:type ontology:chemical_bond }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23512765
P681
Q15989253
USER
What is a component of threonyl-tRNA synthetase    BC4576 ?
(Q23512765,P681,c(Q15989253))
action filter_type
action find
entity Q23512765
relation P681
type Q15989253
['Q23512765', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?t WHERE { resource:Q23512765 property:P681 ?t . ?t rdf:type ontology:Q15989253 }
threonyl-tRNA synthetase    BC4576
action filter_type
action find
entity threonyl-tRNA synthetase    BC4576
relation cell component
type part
['threonyl-tRNA synthetase    BC4576', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?t WHERE { resource:threonyl-tRNA_synthetase____BC4576 property:cell_component ?t . ?t rdf:type ontology:part }
[]
part
Q79899
SYSTEM
cytoplasm
Q79899
(Q23512765,P681,c(Q15989253))
action filter_type
action find
entity Q23512765
relation P681
type Q15989253
A component of threonyl-tRNA synthetase BC4576 is a [ANSWER]
['Q23512765', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?t WHERE { resource:Q23512765 property:P681 ?t . ?t rdf:type ontology:Q15989253 }
cytoplasm
A component of threonyl-tRNA synthetase BC4576 is a cytoplasm
cytoplasm
action filter_type
action find
entity threonyl-tRNA synthetase    BC4576
relation cell component
type part
['threonyl-tRNA synthetase    BC4576', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?t WHERE { resource:threonyl-tRNA_synthetase____BC4576 property:cell_component ?t . ?t rdf:type ontology:part }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23512765
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(c(Q863908),P688,Q79899)
action filter_type
action find_reverse
entity Q23512765
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q79899']
SELECT DISTINCT ?p WHERE { ?p property:P688 resource:Q23512765 . ?p rdf:type ontology:Q863908 }
threonyl-tRNA synthetase    BC4576
action filter_type
action find_reverse
entity threonyl-tRNA synthetase    BC4576
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'cytoplasm']
SELECT DISTINCT ?p WHERE { ?p property:encodes resource:threonyl-tRNA_synthetase____BC4576 . ?p rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23194592
SYSTEM
threonyl-tRNA synthetase    BC4576
Q23194592
(c(Q863908),P688,Q79899)
action filter_type
action find_reverse
entity Q23512765
relation P688
type Q863908
Threonyl-tRNA synthetase BC4576 encodes that nutrient
[{'concept': 'Q863908'}, 'P688', 'Q79899']
SELECT DISTINCT ?p WHERE { ?p property:P688 resource:Q23512765 . ?p rdf:type ontology:Q863908 }
threonyl-tRNA synthetase    BC4576
Threonyl-tRNA synthetase BC4576 encodes that nutrient
threonyl-tRNA synthetase    BC4576
action filter_type
action find_reverse
entity threonyl-tRNA synthetase    BC4576
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'cytoplasm']
SELECT DISTINCT ?p WHERE { ?p property:encodes resource:threonyl-tRNA_synthetase____BC4576 . ?p rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|3 entities, 2 direct, 2(direct) are query entities, subject is indirect
Q23194592 Q23512765 Q24140531
P688
Q181394
USER
Does that nucleic acid sequence encodes threonyl-tRNA synthetase    BC4576 and 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase)    b3633 ?
(Q23194592,P688,Q23512765) (Q23194592,P688,Q24140531)
action is_in
entity Q23194592
action intersection
action find_reverse
entity Q23512765
relation P688
action find_reverse
entity Q24140531
relation P688
['Q23194592', 'P688', 'Q23512765'] ['Q23194592', 'P688', 'Q24140531']
ASK WHERE { resource:Q23194592 property:P688 resource:Q23512765 . resource:Q23194592 property:P688 resource:Q24140531 }
threonyl-tRNA synthetase    BC4576 threonyl-tRNA synthetase    BC4576 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase)    b3633
action is_in
entity threonyl-tRNA synthetase    BC4576
action intersection
action find_reverse
entity threonyl-tRNA synthetase    BC4576
relation encodes
action find_reverse
entity 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase)    b3633
relation encodes
['threonyl-tRNA synthetase    BC4576', 'encodes', 'threonyl-tRNA synthetase    BC4576'] ['threonyl-tRNA synthetase    BC4576', 'encodes', '3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase)    b3633']
ASK WHERE { resource:threonyl-tRNA_synthetase____BC4576 property:encodes resource:threonyl-tRNA_synthetase____BC4576 . resource:threonyl-tRNA_synthetase____BC4576 property:encodes resource:3-deoxy-D-manno-octulosonic-acid_transferase_(KDO_transferase)____b3633 }
[]
nutrient
SYSTEM
YES and NO respectively
(Q23194592,P688,Q23512765) (Q23194592,P688,Q24140531)
action is_in
entity Q23194592
action intersection
action find_reverse
entity Q23512765
relation P688
action find_reverse
entity Q24140531
relation P688
[ANSWER]
['Q23194592', 'P688', 'Q23512765'] ['Q23194592', 'P688', 'Q24140531']
ASK WHERE { resource:Q23194592 property:P688 resource:Q23512765 . resource:Q23194592 property:P688 resource:Q24140531 }
YES and NO respectively
action is_in
entity threonyl-tRNA synthetase    BC4576
action intersection
action find_reverse
entity threonyl-tRNA synthetase    BC4576
relation encodes
action find_reverse
entity 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase)    b3633
relation encodes
['threonyl-tRNA synthetase    BC4576', 'encodes', 'threonyl-tRNA synthetase    BC4576'] ['threonyl-tRNA synthetase    BC4576', 'encodes', '3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase)    b3633']
ASK WHERE { resource:threonyl-tRNA_synthetase____BC4576 property:encodes resource:threonyl-tRNA_synthetase____BC4576 . resource:threonyl-tRNA_synthetase____BC4576 property:encodes resource:3-deoxy-D-manno-octulosonic-acid_transferase_(KDO_transferase)____b3633 }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23194592
P703
Q631147
USER
Which taxon is threonyl-tRNA synthetase    BC4576 a part of ?
(Q23194592,P703,c(Q631147))
action filter_type
action find
entity Q23194592
relation P703
type Q631147
['Q23194592', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?h WHERE { resource:Q23194592 property:P703 ?h . ?h rdf:type ontology:Q631147 }
threonyl-tRNA synthetase    BC4576
action filter_type
action find
entity threonyl-tRNA synthetase    BC4576
relation found in taxon
type infraspecific name
['threonyl-tRNA synthetase    BC4576', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?h WHERE { resource:threonyl-tRNA_synthetase____BC4576 property:found_in_taxon ?h . ?h rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102970
SYSTEM
Bacillus cereus ATCC 14579
Q21102970
(Q23194592,P703,c(Q631147))
action filter_type
action find
entity Q23194592
relation P703
type Q631147
[ANSWER] is threonyl-tRNA synthetase BC4576 a part of
['Q23194592', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?h WHERE { resource:Q23194592 property:P703 ?h . ?h rdf:type ontology:Q631147 }
Bacillus cereus ATCC 14579
Bacillus cereus ATCC 14579 is threonyl-tRNA synthetase BC4576 a part of
Bacillus cereus ATCC 14579
action filter_type
action find
entity threonyl-tRNA synthetase    BC4576
relation found in taxon
type infraspecific name
['threonyl-tRNA synthetase    BC4576', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?h WHERE { resource:threonyl-tRNA_synthetase____BC4576 property:found_in_taxon ?h . ?h rdf:type ontology:infraspecific_name }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q27745201 Q23512765
P703
Q631147
USER
Which infraspecific names are threonyl-tRNA synthetase    BC4576 or phosphoglucomutase/phosphomannomutase    MSMEG_1695 a part of ?
OR((Q23512765,P703,c(Q631147)), (Q27745201,P703,c(Q631147)))
action filter_type
action union
action find
entity Q23512765
relation P703
action find
entity Q27745201
relation P703
type Q631147
{'OR': [['Q23512765', 'P703', {'concept': 'Q631147'}], ['Q27745201', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:Q631147 . { { resource:Q23512765 property:P703 ?s } UNION { resource:Q27745201 property:P703 ?s } } }
phosphoglucomutase/phosphomannomutase    MSMEG_1695 threonyl-tRNA synthetase    BC4576
action filter_type
action union
action find
entity threonyl-tRNA synthetase    BC4576
relation found in taxon
action find
entity phosphoglucomutase/phosphomannomutase    MSMEG_1695
relation found in taxon
type infraspecific name
{'OR': [['threonyl-tRNA synthetase    BC4576', 'found in taxon', {'concept': 'infraspecific name'}], ['phosphoglucomutase/phosphomannomutase    MSMEG_1695', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:infraspecific_name . { { resource:threonyl-tRNA_synthetase____BC4576 property:found_in_taxon ?s } UNION { resource:phosphoglucomutase/phosphomannomutase____MSMEG_1695 property:found_in_taxon ?s } } }
[]
infraspecific name
Q21102986 Q21102970
SYSTEM
Mycobacterium smegmatis str. MC2 155, Bacillus cereus ATCC 14579
Q21102986 Q21102970
OR((Q23512765,P703,c(Q631147)), (Q27745201,P703,c(Q631147)))
action filter_type
action union
action find
entity Q23512765
relation P703
action find
entity Q27745201
relation P703
type Q631147
[ANSWERS] are threonyl-tRNA synthetase BC4576 or phosphoglucomutase/phosphomannomutase MSMEG_1695 a part of
{'OR': [['Q23512765', 'P703', {'concept': 'Q631147'}], ['Q27745201', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:Q631147 . { { resource:Q23512765 property:P703 ?s } UNION { resource:Q27745201 property:P703 ?s } } }
Mycobacterium smegmatis str. MC2 155 Bacillus cereus ATCC 14579
Mycobacterium smegmatis str. MC2 155 and Bacillus cereus ATCC 14579 are threonyl-tRNA synthetase BC4576 or phosphoglucomutase/phosphomannomutase MSMEG_1695 a part of
Mycobacterium smegmatis str. MC2 155 Bacillus cereus ATCC 14579
action filter_type
action union
action find
entity threonyl-tRNA synthetase    BC4576
relation found in taxon
action find
entity phosphoglucomutase/phosphomannomutase    MSMEG_1695
relation found in taxon
type infraspecific name
{'OR': [['threonyl-tRNA synthetase    BC4576', 'found in taxon', {'concept': 'infraspecific name'}], ['phosphoglucomutase/phosphomannomutase    MSMEG_1695', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:infraspecific_name . { { resource:threonyl-tRNA_synthetase____BC4576 property:found_in_taxon ?s } UNION { resource:phosphoglucomutase/phosphomannomutase____MSMEG_1695 property:found_in_taxon ?s } } }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q27745201
P702
Q863908
USER
Which gene encodes phosphoglucomutase/phosphomannomutase    MSMEG_1695?
(Q21102986,P702,c(Q863908)) (Q21102970,P702,c(Q863908))
action filter_type
action find
entity Q27745201
relation P702
type Q863908
['Q21102986', 'P702', {'concept': 'Q863908'}] ['Q21102970', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?e WHERE { resource:Q27745201 property:P702 ?e . ?e rdf:type ontology:Q863908 }
phosphoglucomutase/phosphomannomutase    MSMEG_1695
action filter_type
action find
entity phosphoglucomutase/phosphomannomutase    MSMEG_1695
relation encoded by
type nucleic acid sequence
['Mycobacterium smegmatis str. MC2 155', 'encoded by', {'concept': 'nucleic acid sequence'}] ['Bacillus cereus ATCC 14579', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?e WHERE { resource:phosphoglucomutase/phosphomannomutase____MSMEG_1695 property:encoded_by ?e . ?e rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23271985
SYSTEM
phosphoglucomutase/phosphomannomutase    MSMEG_1695
Q23271985
(Q21102986,P702,c(Q863908)) (Q21102970,P702,c(Q863908))
action filter_type
action find
entity Q27745201
relation P702
type Q863908
Phosphoglucomutase/phosphomannomutase MSMEG 1695 encodes phosphoglucomutase/phosphomannomutase MSMEG_1695
['Q21102986', 'P702', {'concept': 'Q863908'}] ['Q21102970', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?e WHERE { resource:Q27745201 property:P702 ?e . ?e rdf:type ontology:Q863908 }
phosphoglucomutase/phosphomannomutase    MSMEG_1695
Phosphoglucomutase/phosphomannomutase MSMEG 1695 encodes phosphoglucomutase/phosphomannomutase MSMEG_1695
phosphoglucomutase/phosphomannomutase    MSMEG_1695
action filter_type
action find
entity phosphoglucomutase/phosphomannomutase    MSMEG_1695
relation encoded by
type nucleic acid sequence
['Mycobacterium smegmatis str. MC2 155', 'encoded by', {'concept': 'nucleic acid sequence'}] ['Bacillus cereus ATCC 14579', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?e WHERE { resource:phosphoglucomutase/phosphomannomutase____MSMEG_1695 property:encoded_by ?e . ?e rdf:type ontology:nucleic_acid_sequence }
[]