Simple Question (Direct)
Simple Question
Q23473917
P702
Q863908
USER
Which gene encodes DNA replication and repair protein RecF    Caur_3876 ?
(Q23473917,P702,c(Q863908))
action filter_type
action find
entity Q23473917
relation P702
type Q863908
['Q23473917', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?u WHERE { resource:Q23473917 property:P702 ?u . ?u rdf:type ontology:Q863908 }
DNA replication and repair protein RecF    Caur_3876
action filter_type
action find
entity DNA replication and repair protein RecF    Caur_3876
relation encoded by
type nucleic acid sequence
['DNA replication and repair protein RecF    Caur_3876', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?u WHERE { resource:DNA_replication_and_repair_protein_RecF____Caur_3876 property:encoded_by ?u . ?u rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23393740
SYSTEM
DNA replication and repair protein RecF    Caur_3876
Q23393740
(Q23473917,P702,c(Q863908))
action filter_type
action find
entity Q23473917
relation P702
type Q863908
DNA replication and repair protein RecF Caur 3876 encodes DNA replication and repair protein RecF Caur_3876
['Q23473917', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?u WHERE { resource:Q23473917 property:P702 ?u . ?u rdf:type ontology:Q863908 }
DNA replication and repair protein RecF    Caur_3876
DNA replication and repair protein RecF Caur 3876 encodes DNA replication and repair protein RecF Caur_3876
DNA replication and repair protein RecF    Caur_3876
action filter_type
action find
entity DNA replication and repair protein RecF    Caur_3876
relation encoded by
type nucleic acid sequence
['DNA replication and repair protein RecF    Caur_3876', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?u WHERE { resource:DNA_replication_and_repair_protein_RecF____Caur_3876 property:encoded_by ?u . ?u rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23473917
P681
Q15989253
USER
Which part is a component of that nutrient ?
(Q23393740,P681,c(Q15989253))
action filter_type
action find
entity Q23473917
relation P681
type Q15989253
['Q23393740', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?o WHERE { resource:Q23473917 property:P681 ?o . ?o rdf:type ontology:Q15989253 }
DNA replication and repair protein RecF    Caur_3876
action filter_type
action find
entity DNA replication and repair protein RecF    Caur_3876
relation cell component
type part
['DNA replication and repair protein RecF    Caur_3876', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?o WHERE { resource:DNA_replication_and_repair_protein_RecF____Caur_3876 property:cell_component ?o . ?o rdf:type ontology:part }
[]
part
Q79899
SYSTEM
cytoplasm
Q79899
(Q23393740,P681,c(Q15989253))
action filter_type
action find
entity Q23473917
relation P681
type Q15989253
[ANSWER] is a component of that nutrient
['Q23393740', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?o WHERE { resource:Q23473917 property:P681 ?o . ?o rdf:type ontology:Q15989253 }
cytoplasm
Cytoplasm is a component of that nutrient
cytoplasm
action filter_type
action find
entity DNA replication and repair protein RecF    Caur_3876
relation cell component
type part
['DNA replication and repair protein RecF    Caur_3876', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?o WHERE { resource:DNA_replication_and_repair_protein_RecF____Caur_3876 property:cell_component ?o . ?o rdf:type ontology:part }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23032443 Q23393740
P688
Q181394
USER
Which nutrients are DNA replication and repair protein RecF    Caur_3876 or hypothetical protein    RSP_6103 an encoding of ?
OR((Q23393740,P688,c(Q181394)), (Q23032443,P688,c(Q181394)))
action filter_type
action union
action find
entity Q23393740
relation P688
action find
entity Q23032443
relation P688
type Q181394
{'OR': [['Q23393740', 'P688', {'concept': 'Q181394'}], ['Q23032443', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?i WHERE { { { resource:Q23393740 property:P688 ?i } UNION { resource:Q23032443 property:P688 ?i } } . ?i rdf:type ontology:Q181394 }
hypothetical protein    RSP_6103 DNA replication and repair protein RecF    Caur_3876
action filter_type
action union
action find
entity DNA replication and repair protein RecF    Caur_3876
relation encodes
action find
entity hypothetical protein    RSP_6103
relation encodes
type nutrient
{'OR': [['DNA replication and repair protein RecF    Caur_3876', 'encodes', {'concept': 'nutrient'}], ['hypothetical protein    RSP_6103', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?i WHERE { { { resource:DNA_replication_and_repair_protein_RecF____Caur_3876 property:encodes ?i } UNION { resource:hypothetical_protein____RSP_6103 property:encodes ?i } } . ?i rdf:type ontology:nutrient }
[]
nutrient
Q23473917 Q23464896
SYSTEM
DNA replication and repair protein RecF    Caur_3876, hypothetical protein    RSP_6103
Q23473917 Q23464896
OR((Q23393740,P688,c(Q181394)), (Q23032443,P688,c(Q181394)))
action filter_type
action union
action find
entity Q23393740
relation P688
action find
entity Q23032443
relation P688
type Q181394
[ANSWERS]
{'OR': [['Q23393740', 'P688', {'concept': 'Q181394'}], ['Q23032443', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?i WHERE { { { resource:Q23393740 property:P688 ?i } UNION { resource:Q23032443 property:P688 ?i } } . ?i rdf:type ontology:Q181394 }
DNA replication and repair protein RecF    Caur_3876 hypothetical protein    RSP_6103
DNA replication and repair protein RecF Caur 3876 and hypothetical protein RSP 6103 are DNA replication and repair protein RecF Caur_3876 or hypothetical protein RSP_6103 an encoding of
DNA replication and repair protein RecF    Caur_3876 hypothetical protein    RSP_6103
action filter_type
action union
action find
entity DNA replication and repair protein RecF    Caur_3876
relation encodes
action find
entity hypothetical protein    RSP_6103
relation encodes
type nutrient
{'OR': [['DNA replication and repair protein RecF    Caur_3876', 'encodes', {'concept': 'nutrient'}], ['hypothetical protein    RSP_6103', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?i WHERE { { { resource:DNA_replication_and_repair_protein_RecF____Caur_3876 property:encodes ?i } UNION { resource:hypothetical_protein____RSP_6103 property:encodes ?i } } . ?i rdf:type ontology:nutrient }
[]
Comparative Reasoning (All)
Comparative|More/Less|Single entity type
Q14897831
P682
Q1057 Q181394
USER
Which metabolic processes are around the same number of nutrients involved in as isotype switching ?
(c(Q181394),P682,c(Q1057))
action approx
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
action count
action filter_type
action find
entity Q14897831
relation P682
type Q1057
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?d WHERE { { SELECT DISTINCT ( COUNT ( ?u ) AS ?k ) WHERE { resource:Q14897831 property:P682 ?u . ?u rdf:type ontology:Q1057 } } . FILTER ( ?x = ?k ) . { SELECT DISTINCT ?d ( COUNT ( ?j ) AS ?x ) WHERE { ?j property:P682 ?d . ?d rdf:type ontology:Q1057 . ?j rdf:type ontology:Q181394 } GROUP BY ?d } }
isotype switching
action approx
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
action count
action filter_type
action find
entity isotype switching
relation biological process
type metabolic process
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?d WHERE { { SELECT DISTINCT ( COUNT ( ?u ) AS ?k ) WHERE { resource:isotype_switching property:biological_process ?u . ?u rdf:type ontology:metabolic_process } } . FILTER ( ?x = ?k ) . { SELECT DISTINCT ?d ( COUNT ( ?j ) AS ?x ) WHERE { ?j property:biological_process ?d . ?d rdf:type ontology:metabolic_process . ?j rdf:type ontology:nutrient } GROUP BY ?d } }
[]
metabolic process nutrient
Q22251129 Q14905693 Q133895
SYSTEM
proteolysis in other organism, translational initiation, tricarboxylic acid cycle
Q14864889 Q14907628 Q14913194 Q22274727 Q22251129 Q14905693 Q14860777 Q21134382 Q21097138 Q14819379 Q21759902 Q21133617 Q133895 Q21157940 Q21116483 Q14863351 Q21102358 Q21114210 Q14907178 Q21121151 Q14880758 Q21761098 Q22275051 Q21100626 Q14913439 Q14916189 Q21159531 Q21111970 Q898365 Q22274640 Q22279483 Q21119973 Q14865941 Q22282595 Q14907180 Q14907181 Q14905125 Q21096256 Q14863432 Q14902250 Q21124879 Q14909347 Q15313450 Q179924 Q21101220 Q21095286 Q14863986 Q14358591 Q838181 Q21116485 Q14859896 Q21103172 Q22276072 Q14914233 Q14897831 Q14645736 Q14864262 Q14859628 Q14819787 Q21119193 Q22274791 Q14819781 Q22279537 Q22283508 Q14327719 Q22279533 Q21124620 Q14860507 Q21112195 Q14890104 Q14864417 Q14864414 Q21759328 Q900386 Q14912265 Q21760838
(c(Q181394),P682,c(Q1057))
action approx
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
action count
action filter_type
action find
entity Q14897831
relation P682
type Q1057
[ANSWERS] are around the same number of nutrients involved in as isotype switching
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?d WHERE { { SELECT DISTINCT ( COUNT ( ?u ) AS ?k ) WHERE { resource:Q14897831 property:P682 ?u . ?u rdf:type ontology:Q1057 } } . FILTER ( ?x = ?k ) . { SELECT DISTINCT ?d ( COUNT ( ?j ) AS ?x ) WHERE { ?j property:P682 ?d . ?d rdf:type ontology:Q1057 . ?j rdf:type ontology:Q181394 } GROUP BY ?d } }
cellular aromatic compound metabolic process multicellular organism metabolic process cellular ketone body metabolic process secondary metabolic process proteolysis in other organism translational initiation hormone biosynthetic process cofactor metabolic process cellular aldehyde metabolic process one-carbon metabolic process carbon fixation actin modification tricarboxylic acid cycle nitrobenzene metabolic process lymphotoxin A biosynthetic process signal transduction by protein phosphorylation sulfur compound metabolic process regulation of translational initiation by eIF2 alpha dephosphorylation interleukin-2 biosynthetic process reactive nitrogen species metabolic process nucleobase-containing compound metabolic process photosynthesis halogenated hydrocarbon metabolic process peptidyl-lysine modification to peptidyl-hypusine organophosphate metabolic process organic acid metabolic process selenium compound metabolic process reactive oxygen species biosynthetic process glycosylation cellular biosynthetic process cellular macromolecule metabolic process oxygen metabolic process connective tissue growth factor biosynthetic process ketone body metabolic process interleukin-13 biosynthetic process granulocyte macrophage colony-stimulating factor biosynthetic process neurotransmitter metabolic process cellular carbohydrate metabolic process reactive oxygen species metabolic process telomere maintenance via semi-conservative replication interleukin-8 biosynthetic process flavonoid metabolic process methylation-dependent chromatin silencing bioluminescence wax biosynthetic process amyloid fibril formation hormone catabolic process xenobiotic metabolic process respiratory burst interleukin-6 biosynthetic process cellular amino acid metabolic process DNA protection glycosyl compound metabolic process phosphatidic acid metabolic process isotype switching thyroid hormone metabolic process protein metabolic process cellular lipid metabolic process peptide hormone processing cellular modified amino acid metabolic process organic cyclic compound metabolic process generation of precursor metabolites and energy viral RNA genome replication IRES-dependent viral translational initiation small molecule metabolic process transposon integration transposition, DNA-mediated receptor internalization patched ligand maturation toxin metabolic process heterocycle metabolic process drug metabolic process cellular catabolic process demethylation cellular ketone metabolic process phosphorus metabolic process
Proteolysis in other organism, translational initiation and tricarboxylic acid cycle are around the same number of nutrients involved in as isotype switching
proteolysis in other organism translational initiation tricarboxylic acid cycle
action approx
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
action count
action filter_type
action find
entity isotype switching
relation biological process
type metabolic process
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?d WHERE { { SELECT DISTINCT ( COUNT ( ?u ) AS ?k ) WHERE { resource:isotype_switching property:biological_process ?u . ?u rdf:type ontology:metabolic_process } } . FILTER ( ?x = ?k ) . { SELECT DISTINCT ?d ( COUNT ( ?j ) AS ?x ) WHERE { ?j property:biological_process ?d . ?d rdf:type ontology:metabolic_process . ?j rdf:type ontology:nutrient } GROUP BY ?d } }
[]
Comparative Reasoning (All)
Comparative|More/Less|Single entity type|Incomplete
Q14880758
P682
Q1057 Q181394
USER
And how about nucleobase-containing compound metabolic process?
(c(Q181394),P682,c(Q1057))
action approx
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
action count
action filter_type
action find
entity Q14880758
relation P682
type Q1057
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?c WHERE { { SELECT DISTINCT ( COUNT ( ?x ) AS ?y ) WHERE { resource:Q14880758 property:P682 ?x . ?x rdf:type ontology:Q1057 } } . FILTER ( ?v = ?y ) . { SELECT DISTINCT ?c ( COUNT ( ?o ) AS ?v ) WHERE { ?o property:P682 ?c . ?c rdf:type ontology:Q1057 . ?o rdf:type ontology:Q181394 } GROUP BY ?c } }
nucleobase-containing compound metabolic process
action approx
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
action count
action filter_type
action find
entity nucleobase-containing compound metabolic process
relation biological process
type metabolic process
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?c WHERE { { SELECT DISTINCT ( COUNT ( ?x ) AS ?y ) WHERE { resource:nucleobase-containing_compound_metabolic_process property:biological_process ?x . ?x rdf:type ontology:metabolic_process } } . FILTER ( ?v = ?y ) . { SELECT DISTINCT ?c ( COUNT ( ?o ) AS ?v ) WHERE { ?o property:biological_process ?c . ?c rdf:type ontology:metabolic_process . ?o rdf:type ontology:nutrient } GROUP BY ?c } }
[]
metabolic process nutrient
Q22251129 Q14905693 Q133895
SYSTEM
proteolysis in other organism, translational initiation, tricarboxylic acid cycle
Q14864889 Q14907628 Q14913194 Q22274727 Q22251129 Q14905693 Q14860777 Q21134382 Q21097138 Q14819379 Q21759902 Q21133617 Q133895 Q21157940 Q21116483 Q14863351 Q21102358 Q21114210 Q14907178 Q21121151 Q14880758 Q21761098 Q22275051 Q21100626 Q14913439 Q14916189 Q21159531 Q21111970 Q898365 Q22274640 Q22279483 Q21119973 Q14865941 Q22282595 Q14907180 Q14907181 Q14905125 Q21096256 Q14863432 Q14902250 Q21124879 Q14909347 Q15313450 Q179924 Q21101220 Q21095286 Q14863986 Q14358591 Q838181 Q21116485 Q14859896 Q21103172 Q22276072 Q14914233 Q14897831 Q14645736 Q14864262 Q14859628 Q14819787 Q21119193 Q22274791 Q14819781 Q22279537 Q22283508 Q14327719 Q22279533 Q21124620 Q14860507 Q21112195 Q14890104 Q14864417 Q14864414 Q21759328 Q900386 Q14912265 Q21760838
(c(Q181394),P682,c(Q1057))
action approx
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
action count
action filter_type
action find
entity Q14880758
relation P682
type Q1057
[ANSWERS]
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?c WHERE { { SELECT DISTINCT ( COUNT ( ?x ) AS ?y ) WHERE { resource:Q14880758 property:P682 ?x . ?x rdf:type ontology:Q1057 } } . FILTER ( ?v = ?y ) . { SELECT DISTINCT ?c ( COUNT ( ?o ) AS ?v ) WHERE { ?o property:P682 ?c . ?c rdf:type ontology:Q1057 . ?o rdf:type ontology:Q181394 } GROUP BY ?c } }
cellular aromatic compound metabolic process multicellular organism metabolic process cellular ketone body metabolic process secondary metabolic process proteolysis in other organism translational initiation hormone biosynthetic process cofactor metabolic process cellular aldehyde metabolic process one-carbon metabolic process carbon fixation actin modification tricarboxylic acid cycle nitrobenzene metabolic process lymphotoxin A biosynthetic process signal transduction by protein phosphorylation sulfur compound metabolic process regulation of translational initiation by eIF2 alpha dephosphorylation interleukin-2 biosynthetic process reactive nitrogen species metabolic process nucleobase-containing compound metabolic process photosynthesis halogenated hydrocarbon metabolic process peptidyl-lysine modification to peptidyl-hypusine organophosphate metabolic process organic acid metabolic process selenium compound metabolic process reactive oxygen species biosynthetic process glycosylation cellular biosynthetic process cellular macromolecule metabolic process oxygen metabolic process connective tissue growth factor biosynthetic process ketone body metabolic process interleukin-13 biosynthetic process granulocyte macrophage colony-stimulating factor biosynthetic process neurotransmitter metabolic process cellular carbohydrate metabolic process reactive oxygen species metabolic process telomere maintenance via semi-conservative replication interleukin-8 biosynthetic process flavonoid metabolic process methylation-dependent chromatin silencing bioluminescence wax biosynthetic process amyloid fibril formation hormone catabolic process xenobiotic metabolic process respiratory burst interleukin-6 biosynthetic process cellular amino acid metabolic process DNA protection glycosyl compound metabolic process phosphatidic acid metabolic process isotype switching thyroid hormone metabolic process protein metabolic process cellular lipid metabolic process peptide hormone processing cellular modified amino acid metabolic process organic cyclic compound metabolic process generation of precursor metabolites and energy viral RNA genome replication IRES-dependent viral translational initiation small molecule metabolic process transposon integration transposition, DNA-mediated receptor internalization patched ligand maturation toxin metabolic process heterocycle metabolic process drug metabolic process cellular catabolic process demethylation cellular ketone metabolic process phosphorus metabolic process
proteolysis in other organism translational initiation tricarboxylic acid cycle
action approx
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
action count
action filter_type
action find
entity nucleobase-containing compound metabolic process
relation biological process
type metabolic process
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?c WHERE { { SELECT DISTINCT ( COUNT ( ?x ) AS ?y ) WHERE { resource:nucleobase-containing_compound_metabolic_process property:biological_process ?x . ?x rdf:type ontology:metabolic_process } } . FILTER ( ?v = ?y ) . { SELECT DISTINCT ?c ( COUNT ( ?o ) AS ?v ) WHERE { ?o property:biological_process ?c . ?c rdf:type ontology:metabolic_process . ?o rdf:type ontology:nutrient } GROUP BY ?c } }
[]
Clarification
Comparative|More/Less|Single entity type|Indirect
P682
Q1057 Q181394
USER
Which metabolic processes are a biological processes that less number of nutrients are involved in than that metabolic process ?
(c(Q181394),P682,c(Q1057))
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?y WHERE { ?z property:Q2996394 ?y . ?z rdf:type ontology:Q181394 . ?y rdf:type ontology:Q1057 }
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?y WHERE { ?z property:biological_process ?y . ?z rdf:type ontology:nutrient . ?y rdf:type ontology:metabolic_process }
[]
metabolic process nutrient
Comparative|More/Less|Single entity type|Clarification
Q14905693
SYSTEM
Did you mean translational initiation ?
(c(Q181394),P682,c(Q1057))
[ANSWER]
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?y WHERE { ?z property:Q2996394 ?y . ?z rdf:type ontology:Q181394 . ?y rdf:type ontology:Q1057 }
Did you mean translational initiation ?
translational initiation
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?y WHERE { ?z property:biological_process ?y . ?z rdf:type ontology:nutrient . ?y rdf:type ontology:metabolic_process }
[]
Comparative Reasoning (All)
USER
No, I meant tricarboxylic acid cycle. Could you tell me the answer for that?
(c(Q181394),P682,c(Q1057))
Q133895
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
[]
Q22251129 Q14905693 Q21116483
SYSTEM
proteolysis in other organism, translational initiation, lymphotoxin A biosynthetic process
Q14864889 Q14907628 Q14913194 Q22274727 Q22251129 Q14905693 Q14860777 Q21134382 Q21097138 Q14819379 Q21759902 Q21133617 Q21157940 Q21116483 Q21102358 Q21114210 Q14907178 Q21121151 Q14880758 Q21761098 Q22275051 Q21100626 Q14913439 Q14916189 Q21159531 Q21111970 Q898365 Q22274640 Q22279483 Q21119973 Q14865941 Q22282595 Q14907180 Q14907181 Q14905125 Q21096256 Q14863432 Q14902250 Q21124879 Q14909347 Q15313450 Q179924 Q21101220 Q21095286 Q14863986 Q14358591 Q838181 Q21116485 Q21103172 Q22276072 Q14914233 Q14897831 Q14645736 Q14864262 Q14859628 Q14819787 Q21119193 Q22274791 Q14819781 Q22279537 Q22283508 Q14327719 Q22279533 Q14860507 Q21112195 Q14890104 Q14864417 Q14864414 Q21759328 Q900386 Q14912265 Q21760838
(c(Q181394),P682,c(Q1057))
[ANSWERS] are a biological processes that less number of nutrients are involved in than that metabolic process
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?y WHERE { ?z property:Q2996394 ?y . ?z rdf:type ontology:Q181394 . ?y rdf:type ontology:Q1057 }
cellular aromatic compound metabolic process multicellular organism metabolic process cellular ketone body metabolic process secondary metabolic process proteolysis in other organism translational initiation hormone biosynthetic process cofactor metabolic process cellular aldehyde metabolic process one-carbon metabolic process carbon fixation actin modification nitrobenzene metabolic process lymphotoxin A biosynthetic process sulfur compound metabolic process regulation of translational initiation by eIF2 alpha dephosphorylation interleukin-2 biosynthetic process reactive nitrogen species metabolic process nucleobase-containing compound metabolic process photosynthesis halogenated hydrocarbon metabolic process peptidyl-lysine modification to peptidyl-hypusine organophosphate metabolic process organic acid metabolic process selenium compound metabolic process reactive oxygen species biosynthetic process glycosylation cellular biosynthetic process cellular macromolecule metabolic process oxygen metabolic process connective tissue growth factor biosynthetic process ketone body metabolic process interleukin-13 biosynthetic process granulocyte macrophage colony-stimulating factor biosynthetic process neurotransmitter metabolic process cellular carbohydrate metabolic process reactive oxygen species metabolic process telomere maintenance via semi-conservative replication interleukin-8 biosynthetic process flavonoid metabolic process methylation-dependent chromatin silencing bioluminescence wax biosynthetic process amyloid fibril formation hormone catabolic process xenobiotic metabolic process respiratory burst interleukin-6 biosynthetic process DNA protection glycosyl compound metabolic process phosphatidic acid metabolic process isotype switching thyroid hormone metabolic process protein metabolic process cellular lipid metabolic process peptide hormone processing cellular modified amino acid metabolic process organic cyclic compound metabolic process generation of precursor metabolites and energy viral RNA genome replication IRES-dependent viral translational initiation small molecule metabolic process transposon integration receptor internalization patched ligand maturation toxin metabolic process heterocycle metabolic process drug metabolic process cellular catabolic process demethylation cellular ketone metabolic process phosphorus metabolic process
Proteolysis in other organism, translational initiation and lymphotoxin A biosynthetic process are a biological processes that less number of nutrients are involved in than that metabolic process
proteolysis in other organism translational initiation lymphotoxin A biosynthetic process
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?y WHERE { ?z property:biological_process ?y . ?z rdf:type ontology:nutrient . ?y rdf:type ontology:metabolic_process }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23393740
P703
Q631147
USER
Where is DNA replication and repair protein RecF    Caur_3876 found ?
(Q23393740,P703,c(Q631147))
action filter_type
action find
entity Q23393740
relation P703
type Q631147
['Q23393740', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?a WHERE { resource:Q23393740 property:P703 ?a . ?a rdf:type ontology:Q631147 }
DNA replication and repair protein RecF    Caur_3876
action filter_type
action find
entity DNA replication and repair protein RecF    Caur_3876
relation found in taxon
type infraspecific name
['DNA replication and repair protein RecF    Caur_3876', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?a WHERE { resource:DNA_replication_and_repair_protein_RecF____Caur_3876 property:found_in_taxon ?a . ?a rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102955
SYSTEM
Chloroflexus aurantiacus J-10-fl
Q21102955
(Q23393740,P703,c(Q631147))
action filter_type
action find
entity Q23393740
relation P703
type Q631147
DNA replication and repair protein RecF Caur_3876 is found in [ANSWER]
['Q23393740', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?a WHERE { resource:Q23393740 property:P703 ?a . ?a rdf:type ontology:Q631147 }
Chloroflexus aurantiacus J-10-fl
DNA replication and repair protein RecF Caur_3876 is found in Chloroflexus aurantiacus J-10-fl
Chloroflexus aurantiacus J-10-fl
action filter_type
action find
entity DNA replication and repair protein RecF    Caur_3876
relation found in taxon
type infraspecific name
['DNA replication and repair protein RecF    Caur_3876', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?a WHERE { resource:DNA_replication_and_repair_protein_RecF____Caur_3876 property:found_in_taxon ?a . ?a rdf:type ontology:infraspecific_name }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q23204481
Q631147
USER
And also tell me about elongation factor Tu    CD630_00710?
(Q23204481,P703,c(Q631147))
action filter_type
action find
entity Q23204481
relation P703
type Q631147
['Q23204481', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?j WHERE { resource:Q23204481 property:P703 ?j . ?j rdf:type ontology:Q631147 }
elongation factor Tu    CD630_00710
action filter_type
action find
entity elongation factor Tu    CD630_00710
relation found in taxon
type infraspecific name
['elongation factor Tu    CD630_00710', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?j WHERE { resource:elongation_factor_Tu____CD630_00710 property:found_in_taxon ?j . ?j rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102976
SYSTEM
Peptoclostridium difficile 630
Q21102976
(Q23204481,P703,c(Q631147))
action filter_type
action find
entity Q23204481
relation P703
type Q631147
[ANSWER]
['Q23204481', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?j WHERE { resource:Q23204481 property:P703 ?j . ?j rdf:type ontology:Q631147 }
Peptoclostridium difficile 630
Peptoclostridium difficile 630
action filter_type
action find
entity elongation factor Tu    CD630_00710
relation found in taxon
type infraspecific name
['elongation factor Tu    CD630_00710', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?j WHERE { resource:elongation_factor_Tu____CD630_00710 property:found_in_taxon ?j . ?j rdf:type ontology:infraspecific_name }
[]