Simple Question (Direct)
Simple Question
Q23485730
P681
Q15989253
USER
Which part is a component of aspartyl-tRNA synthetase    DR_1055 ?
(Q23485730,P681,c(Q15989253))
action filter_type
action find
entity Q23485730
relation P681
type Q15989253
['Q23485730', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?i WHERE { resource:Q23485730 property:P681 ?i . ?i rdf:type ontology:Q15989253 }
aspartyl-tRNA synthetase    DR_1055
action filter_type
action find
entity aspartyl-tRNA synthetase    DR_1055
relation cell component
type part
['aspartyl-tRNA synthetase    DR_1055', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?i WHERE { resource:aspartyl-tRNA_synthetase____DR_1055 property:cell_component ?i . ?i rdf:type ontology:part }
[]
part
Q79899
SYSTEM
cytoplasm
Q79899
(Q23485730,P681,c(Q15989253))
action filter_type
action find
entity Q23485730
relation P681
type Q15989253
[ANSWER] is a component of aspartyl-tRNA synthetase DR_1055
['Q23485730', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?i WHERE { resource:Q23485730 property:P681 ?i . ?i rdf:type ontology:Q15989253 }
cytoplasm
Cytoplasm is a component of aspartyl-tRNA synthetase DR_1055
cytoplasm
action filter_type
action find
entity aspartyl-tRNA synthetase    DR_1055
relation cell component
type part
['aspartyl-tRNA synthetase    DR_1055', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?i WHERE { resource:aspartyl-tRNA_synthetase____DR_1055 property:cell_component ?i . ?i rdf:type ontology:part }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23485730
P702
Q863908
USER
What is the gene that encodes aspartyl-tRNA synthetase    DR_1055 ?
(Q23485730,P702,c(Q863908))
action filter_type
action find
entity Q23485730
relation P702
type Q863908
['Q23485730', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?q WHERE { resource:Q23485730 property:P702 ?q . ?q rdf:type ontology:Q863908 }
aspartyl-tRNA synthetase    DR_1055
action filter_type
action find
entity aspartyl-tRNA synthetase    DR_1055
relation encoded by
type nucleic acid sequence
['aspartyl-tRNA synthetase    DR_1055', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?q WHERE { resource:aspartyl-tRNA_synthetase____DR_1055 property:encoded_by ?q . ?q rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23188097
SYSTEM
aspartyl-tRNA synthetase    DR_1055
Q23188097
(Q23485730,P702,c(Q863908))
action filter_type
action find
entity Q23485730
relation P702
type Q863908
The gene that encodes aspartyl-tRNA synthetase DR_1055 is also aspartyl-tRNA synthetase DR 1055
['Q23485730', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?q WHERE { resource:Q23485730 property:P702 ?q . ?q rdf:type ontology:Q863908 }
aspartyl-tRNA synthetase    DR_1055
The gene that encodes aspartyl-tRNA synthetase DR_1055 is also aspartyl-tRNA synthetase DR 1055
aspartyl-tRNA synthetase    DR_1055
action filter_type
action find
entity aspartyl-tRNA synthetase    DR_1055
relation encoded by
type nucleic acid sequence
['aspartyl-tRNA synthetase    DR_1055', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?q WHERE { resource:aspartyl-tRNA_synthetase____DR_1055 property:encoded_by ?q . ?q rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23485730
P688
Q863908
USER
Which nucleic acid sequence encodes aspartyl-tRNA synthetase    DR_1055 ?
(c(Q863908),P688,Q23485730)
action filter_type
action find_reverse
entity Q23485730
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q23485730']
SELECT DISTINCT ?a WHERE { ?a property:P688 resource:Q23485730 . ?a rdf:type ontology:Q863908 }
aspartyl-tRNA synthetase    DR_1055
action filter_type
action find_reverse
entity aspartyl-tRNA synthetase    DR_1055
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'aspartyl-tRNA synthetase    DR_1055']
SELECT DISTINCT ?a WHERE { ?a property:encodes resource:aspartyl-tRNA_synthetase____DR_1055 . ?a rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23188097
SYSTEM
aspartyl-tRNA synthetase    DR_1055
Q23188097
(c(Q863908),P688,Q23485730)
action filter_type
action find_reverse
entity Q23485730
relation P688
type Q863908
Aspartyl-tRNA synthetase DR 1055 encodes aspartyl-tRNA synthetase DR_1055
[{'concept': 'Q863908'}, 'P688', 'Q23485730']
SELECT DISTINCT ?a WHERE { ?a property:P688 resource:Q23485730 . ?a rdf:type ontology:Q863908 }
aspartyl-tRNA synthetase    DR_1055
Aspartyl-tRNA synthetase DR 1055 encodes aspartyl-tRNA synthetase DR_1055
aspartyl-tRNA synthetase    DR_1055
action filter_type
action find_reverse
entity aspartyl-tRNA synthetase    DR_1055
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'aspartyl-tRNA synthetase    DR_1055']
SELECT DISTINCT ?a WHERE { ?a property:encodes resource:aspartyl-tRNA_synthetase____DR_1055 . ?a rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23485730
P703
Q631147
USER
Which infraspecific name is that nutrient found in ?
(Q23188097,P703,c(Q631147))
action filter_type
action find
entity Q23485730
relation P703
type Q631147
['Q23188097', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?d WHERE { resource:Q23485730 property:P703 ?d . ?d rdf:type ontology:Q631147 }
aspartyl-tRNA synthetase    DR_1055
action filter_type
action find
entity aspartyl-tRNA synthetase    DR_1055
relation found in taxon
type infraspecific name
['aspartyl-tRNA synthetase    DR_1055', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?d WHERE { resource:aspartyl-tRNA_synthetase____DR_1055 property:found_in_taxon ?d . ?d rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102959
SYSTEM
Deinococcus radiodurans R1
Q21102959
(Q23188097,P703,c(Q631147))
action filter_type
action find
entity Q23485730
relation P703
type Q631147
[ANSWER] is that nutrient found in
['Q23188097', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?d WHERE { resource:Q23485730 property:P703 ?d . ?d rdf:type ontology:Q631147 }
Deinococcus radiodurans R1
Deinococcus radiodurans R1 is that nutrient found in
Deinococcus radiodurans R1
action filter_type
action find
entity aspartyl-tRNA synthetase    DR_1055
relation found in taxon
type infraspecific name
['aspartyl-tRNA synthetase    DR_1055', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?d WHERE { resource:aspartyl-tRNA_synthetase____DR_1055 property:found_in_taxon ?d . ?d rdf:type ontology:infraspecific_name }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation|Incomplete
Q23079162 Q23485730
P703
Q631147
USER
Or cell division protein FtsE    EAE_05530?
OR((Q23485730,P703,c(Q631147)), (Q23079162,P703,c(Q631147)))
action filter_type
action union
action find
entity Q23485730
relation P703
action find
entity Q23079162
relation P703
type Q631147
{'OR': [['Q23485730', 'P703', {'concept': 'Q631147'}], ['Q23079162', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?v WHERE { { { resource:Q23485730 property:P703 ?v } UNION { resource:Q23079162 property:P703 ?v } } . ?v rdf:type ontology:Q631147 }
cell division protein FtsE    EAE_05530 aspartyl-tRNA synthetase    DR_1055
action filter_type
action union
action find
entity aspartyl-tRNA synthetase    DR_1055
relation found in taxon
action find
entity cell division protein FtsE    EAE_05530
relation found in taxon
type infraspecific name
{'OR': [['aspartyl-tRNA synthetase    DR_1055', 'found in taxon', {'concept': 'infraspecific name'}], ['cell division protein FtsE    EAE_05530', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?v WHERE { { { resource:aspartyl-tRNA_synthetase____DR_1055 property:found_in_taxon ?v } UNION { resource:cell_division_protein_FtsE____EAE_05530 property:found_in_taxon ?v } } . ?v rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102959 Q21102927
SYSTEM
Deinococcus radiodurans R1, Enterobacter aerogenes KCTC 2190
Q21102959 Q21102927
OR((Q23485730,P703,c(Q631147)), (Q23079162,P703,c(Q631147)))
action filter_type
action union
action find
entity Q23485730
relation P703
action find
entity Q23079162
relation P703
type Q631147
[ANSWERS]
{'OR': [['Q23485730', 'P703', {'concept': 'Q631147'}], ['Q23079162', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?v WHERE { { { resource:Q23485730 property:P703 ?v } UNION { resource:Q23079162 property:P703 ?v } } . ?v rdf:type ontology:Q631147 }
Deinococcus radiodurans R1 Enterobacter aerogenes KCTC 2190
Deinococcus radiodurans R1 Enterobacter aerogenes KCTC 2190
action filter_type
action union
action find
entity aspartyl-tRNA synthetase    DR_1055
relation found in taxon
action find
entity cell division protein FtsE    EAE_05530
relation found in taxon
type infraspecific name
{'OR': [['aspartyl-tRNA synthetase    DR_1055', 'found in taxon', {'concept': 'infraspecific name'}], ['cell division protein FtsE    EAE_05530', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?v WHERE { { { resource:aspartyl-tRNA_synthetase____DR_1055 property:found_in_taxon ?v } UNION { resource:cell_division_protein_FtsE____EAE_05530 property:found_in_taxon ?v } } . ?v rdf:type ontology:infraspecific_name }
[]
Clarification
Comparative|More/Less|Single entity type|Indirect
P703
Q631147 Q863908
USER
Which infraspecific names are greater number of nucleic acid sequences found than that infraspecific name ?
(c(Q863908),P703,c(Q631147))
[{'concept': 'Q863908'}, 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?y WHERE { ?z property:P703 ?y . ?z rdf:type ontology:Q863908 . ?y rdf:type ontology:Q631147 }
[{'concept': 'nucleic acid sequence'}, 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?y WHERE { ?z property:found_in_taxon ?y . ?z rdf:type ontology:nucleic_acid_sequence . ?y rdf:type ontology:infraspecific_name }
[]
infraspecific name nucleic acid sequence
Comparative|More/Less|Single entity type|Clarification
Q21102959
SYSTEM
Did you mean Deinococcus radiodurans R1 ?
(c(Q863908),P703,c(Q631147))
[ANSWER]
[{'concept': 'Q863908'}, 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?y WHERE { ?z property:P703 ?y . ?z rdf:type ontology:Q863908 . ?y rdf:type ontology:Q631147 }
Did you mean Deinococcus radiodurans R1 ?
Deinococcus radiodurans R1
[{'concept': 'nucleic acid sequence'}, 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?y WHERE { ?z property:found_in_taxon ?y . ?z rdf:type ontology:nucleic_acid_sequence . ?y rdf:type ontology:infraspecific_name }
[]
Comparative Reasoning (All)
USER
Yes
(c(Q863908),P703,c(Q631147))
[{'concept': 'Q863908'}, 'P703', {'concept': 'Q631147'}]
[{'concept': 'nucleic acid sequence'}, 'found in taxon', {'concept': 'infraspecific name'}]
[]
Q21102993 Q21102995 Q21102996
SYSTEM
Burkholderia mallei ATCC 23344, Burkholderia pseudomallei K96243, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Q21102993 Q21102995 Q21102996 Q21102997 Q21102998 Q21102999 Q27510868 Q21065229 Q21079489 Q21102943 Q21102942 Q21102941 Q21102940 Q21102947 Q21102946 Q21102920 Q21102965 Q21102966 Q21102930 Q21102987 Q21102925 Q21102924 Q21102927 Q21102986 Q21102928 Q21102918 Q21102988 Q21079490 Q21079491 Q21102984 Q21102973 Q21102944 Q21102954 Q21102955 Q21102950 Q21102953 Q21102976 Q23309229 Q21102975 Q21102972 Q21102970 Q21102971 Q21064863 Q21102931 Q21102937 Q21102934 Q21102938 Q21102939
(c(Q863908),P703,c(Q631147))
[ANSWERS] are greater number of nucleic acid sequences found than that infraspecific name
[{'concept': 'Q863908'}, 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?y WHERE { ?z property:P703 ?y . ?z rdf:type ontology:Q863908 . ?y rdf:type ontology:Q631147 }
Burkholderia mallei ATCC 23344 Burkholderia pseudomallei K96243 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Salmonella enterica subsp. enterica serovar Typhi str. CT18 Amycolatopsis mediterranei U32 Geobacter sulfurreducens PCA Saccharomyces cerevisiae S288c Leptospira interrogans serovar Lai str. 56601 Pseudomonas putida KT2440 Yersinia pestis CO92 Yersinia enterocolitica subsp. enterocolitica 8081 Shigella flexneri 2a str. 301 Shigella dysenteriae Sd197 Vibrio parahaemolyticus RIMD 2210633 Vibrio fischeri ES114 Acinetobacter pittii PHEA-2 Enterococcus faecalis V583 Enterococcus faecium DO Escherichia coli O157:H7 str. Sakai Mycobacterium tuberculosis H37Rv Bordetella pertussis Tohama I Bordetella bronchiseptica 253 Enterobacter aerogenes KCTC 2190 Mycobacterium smegmatis str. MC2 155 Enterobacter cloacae subsp. cloacae ATCC 13047 Sinorhizobium meliloti 1021 Streptomyces coelicolor A3(2) Pseudomonas syringae pv. syringae B728a Xanthomonas campestris pv. campestris str. ATCC 33913 Mycobacterium bovis AF2122/97 Clostridium acetobutylicum ATCC 824 Aeromonas hydrophila subsp. hydrophila ATCC 7966 Rhodospirillum rubrum ATCC 11170 Chloroflexus aurantiacus J-10-fl Bacteroides fragilis YCH46 Rhodobacter sphaeroides 2.4.1 Peptoclostridium difficile 630 Sinorhizobium fredii NGR234 Clostridium botulinum A str. ATCC 3502 Bacillus thuringiensis serovar konkukian str. 97-27 Bacillus cereus ATCC 14579 Bacillus subtilis subsp. subtilis str. 168 Bordetella parapertussis Bpp5 Escherichia coli UMN026 Escherichia coli O104:H4 str. 2011C-3493 Escherichia coli O83:H1 str. NRG 857C Escherichia coli str. K-12 substr. MG1655 Klebsiella pneumoniae subsp. pneumoniae HS11286
Burkholderia mallei ATCC 23344, Burkholderia pseudomallei K96243 and Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 are greater number of nucleic acid sequences found than that infraspecific name
Burkholderia mallei ATCC 23344 Burkholderia pseudomallei K96243 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
[{'concept': 'nucleic acid sequence'}, 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?y WHERE { ?z property:found_in_taxon ?y . ?z rdf:type ontology:nucleic_acid_sequence . ?y rdf:type ontology:infraspecific_name }
[]