Simple Question (Direct)
Simple Question
Q21133093
P702
Q863908
USER
Which nucleic acid sequence encodes Docking protein 3 ?
(Q21133093,P702,c(Q863908))
action filter_type
action find
entity Q21133093
relation P702
type Q863908
['Q21133093', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?f WHERE { resource:Q21133093 property:P702 ?f . ?f rdf:type ontology:Q863908 }
Docking protein 3
action filter_type
action find
entity Docking protein 3
relation encoded by
type nucleic acid sequence
['Docking protein 3', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?f WHERE { resource:Docking_protein_3 property:encoded_by ?f . ?f rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18046474
SYSTEM
DOK3
Q18046474
(Q21133093,P702,c(Q863908))
action filter_type
action find
entity Q21133093
relation P702
type Q863908
[ANSWER] encodes Docking protein 3
['Q21133093', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?f WHERE { resource:Q21133093 property:P702 ?f . ?f rdf:type ontology:Q863908 }
DOK3
DOK3 encodes Docking protein 3
DOK3
action filter_type
action find
entity Docking protein 3
relation encoded by
type nucleic acid sequence
['Docking protein 3', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?f WHERE { resource:Docking_protein_3 property:encoded_by ?f . ?f rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18046474
P684
Q863908
USER
Which nucleic acid sequence is an orthologous gene for that one ?
(Q18046474,P684,c(Q863908))
action filter_type
action find
entity Q18046474
relation P684
type Q863908
['Q18046474', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?g WHERE { resource:Q18046474 property:P684 ?g . ?g rdf:type ontology:Q863908 }
DOK3
action filter_type
action find
entity DOK3
relation ortholog
type nucleic acid sequence
['DOK3', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?g WHERE { resource:DOK3 property:ortholog ?g . ?g rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18255930
SYSTEM
Dok3
Q18255930
(Q18046474,P684,c(Q863908))
action filter_type
action find
entity Q18046474
relation P684
type Q863908
[ANSWER] is an orthologous gene for that one
['Q18046474', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?g WHERE { resource:Q18046474 property:P684 ?g . ?g rdf:type ontology:Q863908 }
Dok3
Dok3 is an orthologous gene for that one
Dok3
action filter_type
action find
entity DOK3
relation ortholog
type nucleic acid sequence
['DOK3', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?g WHERE { resource:DOK3 property:ortholog ?g . ?g rdf:type ontology:nucleic_acid_sequence }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23377230 Q18046474
P702
Q181394
USER
Which nutrients are encoded by DOK3 or 50S ribosomal protein L2    CA_C3130 ?
OR((c(Q181394),P702,Q18046474), (c(Q181394),P702,Q23377230))
action filter_type
action union
action find_reverse
entity Q18046474
relation P702
action find_reverse
entity Q23377230
relation P702
type Q181394
{'OR': [[{'concept': 'Q181394'}, 'P702', 'Q18046474'], [{'concept': 'Q181394'}, 'P702', 'Q23377230']]}
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:Q181394 . { { ?b property:P702 resource:Q18046474 } UNION { ?b property:P702 resource:Q23377230 } } }
50S ribosomal protein L2    CA_C3130 DOK3
action filter_type
action union
action find_reverse
entity DOK3
relation encoded by
action find_reverse
entity 50S ribosomal protein L2    CA_C3130
relation encoded by
type nutrient
{'OR': [[{'concept': 'nutrient'}, 'encoded by', 'DOK3'], [{'concept': 'nutrient'}, 'encoded by', '50S ribosomal protein L2    CA_C3130']]}
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:nutrient . { { ?b property:encoded_by resource:DOK3 } UNION { ?b property:encoded_by resource:50S_ribosomal_protein_L2____CA_C3130 } } }
[]
nutrient
Q21133093 Q21140812 Q23524194
SYSTEM
Docking protein 3, Docking protein 3, 50S ribosomal protein L2    CA_C3130
Q21133093 Q21140812 Q23524194
OR((c(Q181394),P702,Q18046474), (c(Q181394),P702,Q23377230))
action filter_type
action union
action find_reverse
entity Q18046474
relation P702
action find_reverse
entity Q23377230
relation P702
type Q181394
[ANSWERS]
{'OR': [[{'concept': 'Q181394'}, 'P702', 'Q18046474'], [{'concept': 'Q181394'}, 'P702', 'Q23377230']]}
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:Q181394 . { { ?b property:P702 resource:Q18046474 } UNION { ?b property:P702 resource:Q23377230 } } }
Docking protein 3 Docking protein 3 50S ribosomal protein L2    CA_C3130
Docking protein 3, Docking protein 3 and 50S ribosomal protein L2 CA C3130 are encoded by DOK3 or 50S ribosomal protein L2 CA_C3130
Docking protein 3 Docking protein 3 50S ribosomal protein L2    CA_C3130
action filter_type
action union
action find_reverse
entity DOK3
relation encoded by
action find_reverse
entity 50S ribosomal protein L2    CA_C3130
relation encoded by
type nutrient
{'OR': [[{'concept': 'nutrient'}, 'encoded by', 'DOK3'], [{'concept': 'nutrient'}, 'encoded by', '50S ribosomal protein L2    CA_C3130']]}
SELECT DISTINCT ?b WHERE { ?b rdf:type ontology:nutrient . { { ?b property:encoded_by resource:DOK3 } UNION { ?b property:encoded_by resource:50S_ribosomal_protein_L2____CA_C3130 } } }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21133093
P681
Q15989253
USER
Which parts are components of Docking protein 3 ?
(Q21133093,P681,c(Q15989253))
action filter_type
action find
entity Q21133093
relation P681
type Q15989253
['Q21133093', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?y WHERE { resource:Q21133093 property:P681 ?y . ?y rdf:type ontology:Q15989253 }
Docking protein 3
action filter_type
action find
entity Docking protein 3
relation cell component
type part
['Docking protein 3', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?y WHERE { resource:Docking_protein_3 property:cell_component ?y . ?y rdf:type ontology:part }
[]
part
Q79899 Q14349455
SYSTEM
cytoplasm, membrane
Q79899 Q14349455
(Q21133093,P681,c(Q15989253))
action filter_type
action find
entity Q21133093
relation P681
type Q15989253
[ANSWERS] are components of Docking protein 3
['Q21133093', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?y WHERE { resource:Q21133093 property:P681 ?y . ?y rdf:type ontology:Q15989253 }
cytoplasm membrane
Cytoplasm and membrane are components of Docking protein 3
cytoplasm membrane
action filter_type
action find
entity Docking protein 3
relation cell component
type part
['Docking protein 3', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?y WHERE { resource:Docking_protein_3 property:cell_component ?y . ?y rdf:type ontology:part }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q21991083
Q15989253
USER
And what about Solute carrier family 35 member F5?
(Q21991083,P681,c(Q15989253))
action filter_type
action find
entity Q21991083
relation P681
type Q15989253
['Q21991083', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?s WHERE { resource:Q21991083 property:P681 ?s . ?s rdf:type ontology:Q15989253 }
Solute carrier family 35 member F5
action filter_type
action find
entity Solute carrier family 35 member F5
relation cell component
type part
['Solute carrier family 35 member F5', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?s WHERE { resource:Solute_carrier_family_35_member_F5 property:cell_component ?s . ?s rdf:type ontology:part }
[]
part
Q14349455
SYSTEM
membrane
Q14349455
(Q21991083,P681,c(Q15989253))
action filter_type
action find
entity Q21991083
relation P681
type Q15989253
[ANSWER]
['Q21991083', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?s WHERE { resource:Q21991083 property:P681 ?s . ?s rdf:type ontology:Q15989253 }
membrane
membrane
action filter_type
action find
entity Solute carrier family 35 member F5
relation cell component
type part
['Solute carrier family 35 member F5', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?s WHERE { resource:Solute_carrier_family_35_member_F5 property:cell_component ?s . ?s rdf:type ontology:part }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q18258773 Q18046474
P688
Q181394
USER
Which nutrients are DOK3 or Jmy an encoding of ?
OR((Q18046474,P688,c(Q181394)), (Q18258773,P688,c(Q181394)))
action filter_type
action union
action find
entity Q18046474
relation P688
action find
entity Q18258773
relation P688
type Q181394
{'OR': [['Q18046474', 'P688', {'concept': 'Q181394'}], ['Q18258773', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?n WHERE { { { resource:Q18046474 property:P688 ?n } UNION { resource:Q18258773 property:P688 ?n } } . ?n rdf:type ontology:Q181394 }
Jmy DOK3
action filter_type
action union
action find
entity DOK3
relation encodes
action find
entity Jmy
relation encodes
type nutrient
{'OR': [['DOK3', 'encodes', {'concept': 'nutrient'}], ['Jmy', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?n WHERE { { { resource:DOK3 property:encodes ?n } UNION { resource:Jmy property:encodes ?n } } . ?n rdf:type ontology:nutrient }
[]
nutrient
Q21133093 Q21981076 Q21140812
SYSTEM
Docking protein 3, Junction-mediating and -regulatory protein, Docking protein 3
Q21133093 Q21981076 Q21140812
OR((Q18046474,P688,c(Q181394)), (Q18258773,P688,c(Q181394)))
action filter_type
action union
action find
entity Q18046474
relation P688
action find
entity Q18258773
relation P688
type Q181394
[ANSWERS] are DOK3 or Jmy an encoding of
{'OR': [['Q18046474', 'P688', {'concept': 'Q181394'}], ['Q18258773', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?n WHERE { { { resource:Q18046474 property:P688 ?n } UNION { resource:Q18258773 property:P688 ?n } } . ?n rdf:type ontology:Q181394 }
Docking protein 3 Junction-mediating and -regulatory protein Docking protein 3
Docking protein 3, Junction-mediating and -regulatory protein and Docking protein 3 are DOK3 or Jmy an encoding of
Docking protein 3 Junction-mediating and -regulatory protein Docking protein 3
action filter_type
action union
action find
entity DOK3
relation encodes
action find
entity Jmy
relation encodes
type nutrient
{'OR': [['DOK3', 'encodes', {'concept': 'nutrient'}], ['Jmy', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?n WHERE { { { resource:DOK3 property:encodes ?n } UNION { resource:Jmy property:encodes ?n } } . ?n rdf:type ontology:nutrient }
[]
Clarification
Quantitative|Count|Single entity type|Indirect
P688
Q863908
USER
How many nucleic acid sequences encode that nutrient ?
(c(Q863908),P688,Q21133093)
[{'concept': 'Q863908'}, 'P688', 'Q21133093']
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { ?z property:P688 resource:Q21983893 . ?z rdf:type ontology:Q863908 }
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Docking protein 3']
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { ?z property:encodes resource:Docking_protein_3 . ?z rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Quantitative|Count|Single entity type|Clarification
Q21133093
SYSTEM
Did you mean Docking protein 3 ?
(c(Q863908),P688,Q21133093) (c(Q863908),P688,Q21981076) (c(Q863908),P688,Q21140812)
[ANSWER]
[{'concept': 'Q863908'}, 'P688', 'Q21133093'] [{'concept': 'Q863908'}, 'P688', 'Q21981076'] [{'concept': 'Q863908'}, 'P688', 'Q21140812']
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { ?z property:P688 resource:Q21983893 . ?z rdf:type ontology:Q863908 }
Did you mean Docking protein 3 ?
Docking protein 3
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Docking protein 3'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'Junction-mediating and -regulatory protein'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'Docking protein 3']
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { ?z property:encodes resource:Docking_protein_3 . ?z rdf:type ontology:nucleic_acid_sequence }
[]
Quantitative Reasoning (Count) (All)
USER
Yes
(c(Q863908),P688,Q21133093)
[{'concept': 'Q863908'}, 'P688', 'Q21133093']
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Docking protein 3']
[]
SYSTEM
1
Q18046474
(c(Q863908),P688,Q21133093)
[ANSWER]
[{'concept': 'Q863908'}, 'P688', 'Q21133093']
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { ?z property:P688 resource:Q21983893 . ?z rdf:type ontology:Q863908 }
DOK3
1
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Docking protein 3']
SELECT DISTINCT ( COUNT ( ?z ) AS ?y ) WHERE { ?z property:encodes resource:Docking_protein_3 . ?z rdf:type ontology:nucleic_acid_sequence }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Single entity type
Q14913194
P682
Q1057 Q181394
USER
How many metabolic processes are more number of nutrients involved in than cellular ketone body metabolic process ?
(c(Q181394),P682,c(Q1057))
action count
action greater
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
action count
action filter_type
action find
entity Q14913194
relation P682
type Q1057
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ( COUNT ( ?r ) AS ?g ) WHERE { { SELECT DISTINCT ?r ( COUNT ( ?a ) AS ?f ) WHERE { ?r rdf:type ontology:Q1057 . ?a rdf:type ontology:Q181394 . ?a property:P682 ?r } GROUP BY ?r } . { SELECT DISTINCT ( COUNT ( ?s ) AS ?y ) WHERE { resource:Q14913194 property:P682 ?s . ?s rdf:type ontology:Q1057 } } . FILTER ( ?f > ?y ) }
cellular ketone body metabolic process
action count
action greater
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
action count
action filter_type
action find
entity cellular ketone body metabolic process
relation biological process
type metabolic process
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ( COUNT ( ?r ) AS ?g ) WHERE { { SELECT DISTINCT ?r ( COUNT ( ?a ) AS ?f ) WHERE { ?r rdf:type ontology:metabolic_process . ?a rdf:type ontology:nutrient . ?a property:biological_process ?r } GROUP BY ?r } . { SELECT DISTINCT ( COUNT ( ?s ) AS ?y ) WHERE { resource:cellular_ketone_body_metabolic_process property:biological_process ?s . ?s rdf:type ontology:metabolic_process } } . FILTER ( ?f > ?y ) }
[]
metabolic process nutrient
SYSTEM
57
Q14864889 Q14907628 Q22274727 Q22251129 Q14905693 Q14860777 Q21097138 Q14819379 Q21759902 Q133895 Q21157940 Q14863351 Q21102358 Q14907178 Q14880758 Q21761098 Q14762260 Q21100626 Q14916189 Q14349667 Q14349764 Q21159531 Q898365 Q22274640 Q22279483 Q21119973 Q14905125 Q21096256 Q14863432 Q14909347 Q15313450 Q179924 Q21101220 Q21095286 Q14863986 Q14358591 Q838181 Q14859896 Q21103172 Q22276072 Q14897831 Q14645736 Q14864262 Q14859628 Q14819787 Q14819781 Q22279537 Q22283508 Q14327719 Q21124620 Q14860507 Q14890104 Q14864417 Q14864414 Q900386 Q14912265 Q21760838
(c(Q181394),P682,c(Q1057))
action count
action greater
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
action count
action filter_type
action find
entity Q14913194
relation P682
type Q1057
[ANSWER]
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ( COUNT ( ?r ) AS ?g ) WHERE { { SELECT DISTINCT ?r ( COUNT ( ?a ) AS ?f ) WHERE { ?r rdf:type ontology:Q1057 . ?a rdf:type ontology:Q181394 . ?a property:P682 ?r } GROUP BY ?r } . { SELECT DISTINCT ( COUNT ( ?s ) AS ?y ) WHERE { resource:Q14913194 property:P682 ?s . ?s rdf:type ontology:Q1057 } } . FILTER ( ?f > ?y ) }
cellular aromatic compound metabolic process multicellular organism metabolic process secondary metabolic process proteolysis in other organism translational initiation hormone biosynthetic process cellular aldehyde metabolic process one-carbon metabolic process carbon fixation tricarboxylic acid cycle nitrobenzene metabolic process signal transduction by protein phosphorylation sulfur compound metabolic process interleukin-2 biosynthetic process nucleobase-containing compound metabolic process photosynthesis carbohydrate metabolic process peptidyl-lysine modification to peptidyl-hypusine organic acid metabolic process lipid metabolic process oxidation-reduction process selenium compound metabolic process glycosylation cellular biosynthetic process cellular macromolecule metabolic process oxygen metabolic process neurotransmitter metabolic process cellular carbohydrate metabolic process reactive oxygen species metabolic process flavonoid metabolic process methylation-dependent chromatin silencing bioluminescence wax biosynthetic process amyloid fibril formation hormone catabolic process xenobiotic metabolic process respiratory burst cellular amino acid metabolic process DNA protection glycosyl compound metabolic process isotype switching thyroid hormone metabolic process protein metabolic process cellular lipid metabolic process peptide hormone processing generation of precursor metabolites and energy viral RNA genome replication IRES-dependent viral translational initiation small molecule metabolic process transposition, DNA-mediated receptor internalization toxin metabolic process heterocycle metabolic process drug metabolic process demethylation cellular ketone metabolic process phosphorus metabolic process
57
action count
action greater
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
action count
action filter_type
action find
entity cellular ketone body metabolic process
relation biological process
type metabolic process
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ( COUNT ( ?r ) AS ?g ) WHERE { { SELECT DISTINCT ?r ( COUNT ( ?a ) AS ?f ) WHERE { ?r rdf:type ontology:metabolic_process . ?a rdf:type ontology:nutrient . ?a property:biological_process ?r } GROUP BY ?r } . { SELECT DISTINCT ( COUNT ( ?s ) AS ?y ) WHERE { resource:cellular_ketone_body_metabolic_process property:biological_process ?s . ?s rdf:type ontology:metabolic_process } } . FILTER ( ?f > ?y ) }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Single entity type|Incomplete
Q14907181
P682
Q1057 Q181394
USER
And also tell me about granulocyte macrophage colony-stimulating factor biosynthetic process?
(c(Q181394),P682,c(Q1057))
action count
action greater
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
action count
action filter_type
action find
entity Q14907181
relation P682
type Q1057
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ( COUNT ( ?k ) AS ?y ) WHERE { { SELECT DISTINCT ?k ( COUNT ( ?x ) AS ?q ) WHERE { ?k rdf:type ontology:Q1057 . ?x rdf:type ontology:Q181394 . ?x property:P682 ?k } GROUP BY ?k } . FILTER ( ?q > ?v ) . { SELECT DISTINCT ( COUNT ( ?b ) AS ?v ) WHERE { resource:Q14907181 property:P682 ?b . ?b rdf:type ontology:Q1057 } } }
granulocyte macrophage colony-stimulating factor biosynthetic process
action count
action greater
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
action count
action filter_type
action find
entity granulocyte macrophage colony-stimulating factor biosynthetic process
relation biological process
type metabolic process
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ( COUNT ( ?k ) AS ?y ) WHERE { { SELECT DISTINCT ?k ( COUNT ( ?x ) AS ?q ) WHERE { ?k rdf:type ontology:metabolic_process . ?x rdf:type ontology:nutrient . ?x property:biological_process ?k } GROUP BY ?k } . FILTER ( ?q > ?v ) . { SELECT DISTINCT ( COUNT ( ?b ) AS ?v ) WHERE { resource:granulocyte_macrophage_colony-stimulating_factor_biosynthetic_process property:biological_process ?b . ?b rdf:type ontology:metabolic_process } } }
[]
metabolic process nutrient
SYSTEM
71
Q14864889 Q14907628 Q14913194 Q22274727 Q22251129 Q14905693 Q14860777 Q21134382 Q21097138 Q14819379 Q21759902 Q133895 Q21157940 Q21116483 Q14863351 Q21102358 Q21114210 Q14907178 Q14880758 Q21761098 Q14762260 Q21100626 Q14913439 Q14916189 Q14349667 Q14349764 Q21159531 Q898365 Q22274640 Q22279483 Q21119973 Q14907180 Q14905125 Q21096256 Q14863432 Q14902250 Q21124879 Q14909347 Q15313450 Q179924 Q21101220 Q21095286 Q14863986 Q14358591 Q838181 Q21116485 Q14859896 Q21103172 Q22276072 Q14914233 Q14897831 Q14645736 Q14864262 Q14859628 Q14819787 Q22274791 Q14819781 Q22279537 Q22283508 Q14327719 Q22279533 Q21124620 Q14860507 Q21112195 Q14890104 Q14864417 Q14864414 Q21759328 Q900386 Q14912265 Q21760838
(c(Q181394),P682,c(Q1057))
action count
action greater
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
action count
action filter_type
action find
entity Q14907181
relation P682
type Q1057
[ANSWER]
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ( COUNT ( ?k ) AS ?y ) WHERE { { SELECT DISTINCT ?k ( COUNT ( ?x ) AS ?q ) WHERE { ?k rdf:type ontology:Q1057 . ?x rdf:type ontology:Q181394 . ?x property:P682 ?k } GROUP BY ?k } . FILTER ( ?q > ?v ) . { SELECT DISTINCT ( COUNT ( ?b ) AS ?v ) WHERE { resource:Q14907181 property:P682 ?b . ?b rdf:type ontology:Q1057 } } }
cellular aromatic compound metabolic process multicellular organism metabolic process cellular ketone body metabolic process secondary metabolic process proteolysis in other organism translational initiation hormone biosynthetic process cofactor metabolic process cellular aldehyde metabolic process one-carbon metabolic process carbon fixation tricarboxylic acid cycle nitrobenzene metabolic process lymphotoxin A biosynthetic process signal transduction by protein phosphorylation sulfur compound metabolic process regulation of translational initiation by eIF2 alpha dephosphorylation interleukin-2 biosynthetic process nucleobase-containing compound metabolic process photosynthesis carbohydrate metabolic process peptidyl-lysine modification to peptidyl-hypusine organophosphate metabolic process organic acid metabolic process lipid metabolic process oxidation-reduction process selenium compound metabolic process glycosylation cellular biosynthetic process cellular macromolecule metabolic process oxygen metabolic process interleukin-13 biosynthetic process neurotransmitter metabolic process cellular carbohydrate metabolic process reactive oxygen species metabolic process telomere maintenance via semi-conservative replication interleukin-8 biosynthetic process flavonoid metabolic process methylation-dependent chromatin silencing bioluminescence wax biosynthetic process amyloid fibril formation hormone catabolic process xenobiotic metabolic process respiratory burst interleukin-6 biosynthetic process cellular amino acid metabolic process DNA protection glycosyl compound metabolic process phosphatidic acid metabolic process isotype switching thyroid hormone metabolic process protein metabolic process cellular lipid metabolic process peptide hormone processing organic cyclic compound metabolic process generation of precursor metabolites and energy viral RNA genome replication IRES-dependent viral translational initiation small molecule metabolic process transposon integration transposition, DNA-mediated receptor internalization patched ligand maturation toxin metabolic process heterocycle metabolic process drug metabolic process cellular catabolic process demethylation cellular ketone metabolic process phosphorus metabolic process
71
action count
action greater
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
action count
action filter_type
action find
entity granulocyte macrophage colony-stimulating factor biosynthetic process
relation biological process
type metabolic process
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ( COUNT ( ?k ) AS ?y ) WHERE { { SELECT DISTINCT ?k ( COUNT ( ?x ) AS ?q ) WHERE { ?k rdf:type ontology:metabolic_process . ?x rdf:type ontology:nutrient . ?x property:biological_process ?k } GROUP BY ?k } . FILTER ( ?q > ?v ) . { SELECT DISTINCT ( COUNT ( ?b ) AS ?v ) WHERE { resource:granulocyte_macrophage_colony-stimulating_factor_biosynthetic_process property:biological_process ?b . ?b rdf:type ontology:metabolic_process } } }
[]
Comparative Reasoning (All)
Comparative|More/Less|Single entity type
Q14904772
P682
Q2996394 Q181394
USER
Which biological processes are a biological processes that less number of nutrients are involved in than spermatogenesis, exchange of chromosomal proteins ?
(c(Q181394),P682,c(Q2996394))
action less
action find_reverse_tuple_counts
relation P682
type Q2996394
type Q181394
action count
action filter_type
action find_reverse
entity Q14904772
relation P682
type Q181394
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?i WHERE { { SELECT DISTINCT ?i ( COUNT ( ?n ) AS ?q ) WHERE { ?n property:P682 ?i . ?n rdf:type ontology:Q181394 . ?i rdf:type ontology:Q2996394 } GROUP BY ?i } . FILTER ( ?q < ?r ) . { SELECT DISTINCT ( COUNT ( ?d ) AS ?r ) WHERE { ?d property:P682 resource:Q14904772 . ?d rdf:type ontology:Q181394 } } }
spermatogenesis, exchange of chromosomal proteins
action less
action find_reverse_tuple_counts
relation biological process
type biological process
type nutrient
action count
action filter_type
action find_reverse
entity spermatogenesis, exchange of chromosomal proteins
relation biological process
type nutrient
[{'concept': 'nutrient'}, 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?i WHERE { { SELECT DISTINCT ?i ( COUNT ( ?n ) AS ?q ) WHERE { ?n property:biological_process ?i . ?n rdf:type ontology:nutrient . ?i rdf:type ontology:biological_process } GROUP BY ?i } . FILTER ( ?q < ?r ) . { SELECT DISTINCT ( COUNT ( ?d ) AS ?r ) WHERE { ?d property:biological_process resource:spermatogenesis,_exchange_of_chromosomal_proteins . ?d rdf:type ontology:nutrient } } }
[]
biological process nutrient
Q21108938 Q14912956 Q22294591
SYSTEM
preantral ovarian follicle growth, ovarian cumulus expansion, mitotic cell cycle arrest in response to pheromone
Q22294591 Q21172195 Q21107328 Q22295734 Q14904219 Q22271492 Q22271494 Q14864899 Q21122953 Q21104659 Q22294349 Q15325345 Q22269626 Q24459941 Q21438150 Q21114926 Q21116174 Q14864099 Q21444598 Q21136671 Q22253821 Q14863654 Q21109007 Q22279989 Q21127160 Q14865397 Q14859996 Q14865659 Q21171796 Q21120908 Q22271501 Q22281166 Q14908045 Q21105147 Q21123910 Q22298156 Q22271697 Q21119405 Q21130764 Q21418091 Q14864443 Q21124921 Q14904764 Q22250139 Q14863667 Q21108563 Q21111494 Q17304930 Q22284328 Q21108938 Q21106266 Q22271479 Q14912956 Q22279704 Q21102309 Q22269699 Q21115753 Q24459846 Q22274350 Q21115817 Q21104842 Q21132115
(c(Q181394),P682,c(Q2996394))
action less
action find_reverse_tuple_counts
relation P682
type Q2996394
type Q181394
action count
action filter_type
action find_reverse
entity Q14904772
relation P682
type Q181394
[ANSWERS] are a biological processes that less number of nutrients are involved in than spermatogenesis, exchange of chromosomal proteins
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?i WHERE { { SELECT DISTINCT ?i ( COUNT ( ?n ) AS ?q ) WHERE { ?n property:P682 ?i . ?n rdf:type ontology:Q181394 . ?i rdf:type ontology:Q2996394 } GROUP BY ?i } . FILTER ( ?q < ?r ) . { SELECT DISTINCT ( COUNT ( ?d ) AS ?r ) WHERE { ?d property:P682 resource:Q14904772 . ?d rdf:type ontology:Q181394 } } }
mitotic cell cycle arrest in response to pheromone positive regulation of growth factor dependent skeletal muscle satellite cell proliferation development involved in symbiotic interaction leukocyte activation developmental process involved in reproduction detoxification of zinc ion detoxification of arsenic-containing substance acrosome matrix dispersal male pronucleus assembly detoxification of nitrogen compound dormancy process pronuclear fusion single-organism developmental process manchette assembly protein activation cascade complement-dependent cytotoxicity synaptic vesicle targeting ovulation cycle process positive regulation of flagellated sperm motility involved in capacitation female pronucleus assembly regulation of transcription involved in meiotic cell cycle multicellular organismal reproductive process developmental induction gene conversion at mating-type locus, DNA double-strand break processing fertilization, exchange of chromosomal proteins T cell selection mesenchymal smoothened signaling pathway involved in prostate gland development tolerance induction nitric oxide storage cellular localization multi-organism cellular process gene conversion at mating-type locus, DNA double-strand break formation menstrual cycle phase single organism reproductive process leukocyte mediated cytotoxicity maintenance of cell number activation of immune response single-organism behavior ultradian rhythm antibody-dependent cellular cytotoxicity response to inactivity P granule organization primary ovarian follicle growth meiotic cell cycle process rhythmic behavior cellular response to stimulus activation of meiosis involved in egg activation cell cycle process peptide mating pheromone maturation involved in conjugation with cellular fusion preantral ovarian follicle growth carbohydrate utilization mycothiol-dependent detoxification ovarian cumulus expansion gene conversion at mating-type locus, DNA repair synthesis response to abiotic stimulus growth involved in symbiotic interaction behavioral response to nutrient intermicrovillar adhesion phenotypic switching directional locomotion chromosome localization to nuclear envelope involved in homologous chromosome segregation prevention of polyspermy
Preantral ovarian follicle growth, ovarian cumulus expansion and mitotic cell cycle arrest in response to pheromone are a biological processes that less number of nutrients are involved in than spermatogenesis, exchange of chromosomal proteins
preantral ovarian follicle growth ovarian cumulus expansion mitotic cell cycle arrest in response to pheromone
action less
action find_reverse_tuple_counts
relation biological process
type biological process
type nutrient
action count
action filter_type
action find_reverse
entity spermatogenesis, exchange of chromosomal proteins
relation biological process
type nutrient
[{'concept': 'nutrient'}, 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?i WHERE { { SELECT DISTINCT ?i ( COUNT ( ?n ) AS ?q ) WHERE { ?n property:biological_process ?i . ?n rdf:type ontology:nutrient . ?i rdf:type ontology:biological_process } GROUP BY ?i } . FILTER ( ?q < ?r ) . { SELECT DISTINCT ( COUNT ( ?d ) AS ?r ) WHERE { ?d property:biological_process resource:spermatogenesis,_exchange_of_chromosomal_proteins . ?d rdf:type ontology:nutrient } } }
[]
Comparative Reasoning (All)
Comparative|More/Less|Single entity type|Incomplete
Q21107328
P682
Q2996394 Q181394
USER
And also tell me about development involved in symbiotic interaction?
(c(Q181394),P682,c(Q2996394))
action less
action find_reverse_tuple_counts
relation P682
type Q2996394
type Q181394
action count
action filter_type
action find_reverse
entity Q21107328
relation P682
type Q181394
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?d WHERE { { SELECT DISTINCT ?d ( COUNT ( ?r ) AS ?g ) WHERE { ?r property:P682 ?d . ?r rdf:type ontology:Q181394 . ?d rdf:type ontology:Q2996394 } GROUP BY ?d } . { SELECT DISTINCT ( COUNT ( ?p ) AS ?k ) WHERE { ?p property:P682 resource:Q21107328 . ?p rdf:type ontology:Q181394 } } . FILTER ( ?g < ?k ) }
development involved in symbiotic interaction
action less
action find_reverse_tuple_counts
relation biological process
type biological process
type nutrient
action count
action filter_type
action find_reverse
entity development involved in symbiotic interaction
relation biological process
type nutrient
[{'concept': 'nutrient'}, 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?d WHERE { { SELECT DISTINCT ?d ( COUNT ( ?r ) AS ?g ) WHERE { ?r property:biological_process ?d . ?r rdf:type ontology:nutrient . ?d rdf:type ontology:biological_process } GROUP BY ?d } . { SELECT DISTINCT ( COUNT ( ?p ) AS ?k ) WHERE { ?p property:biological_process resource:development_involved_in_symbiotic_interaction . ?p rdf:type ontology:nutrient } } . FILTER ( ?g < ?k ) }
[]
biological process nutrient
Q22271492 Q14864899 Q15325345
SYSTEM
detoxification of zinc ion, acrosome matrix dispersal, pronuclear fusion
Q22271492 Q14864899 Q22294349 Q15325345 Q24459941 Q21438150 Q22253821 Q21127160 Q21171796 Q22271501 Q22281166 Q14908045 Q22271697 Q17304930 Q22279704 Q22269699 Q22274350
(c(Q181394),P682,c(Q2996394))
action less
action find_reverse_tuple_counts
relation P682
type Q2996394
type Q181394
action count
action filter_type
action find_reverse
entity Q21107328
relation P682
type Q181394
[ANSWERS]
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?d WHERE { { SELECT DISTINCT ?d ( COUNT ( ?r ) AS ?g ) WHERE { ?r property:P682 ?d . ?r rdf:type ontology:Q181394 . ?d rdf:type ontology:Q2996394 } GROUP BY ?d } . { SELECT DISTINCT ( COUNT ( ?p ) AS ?k ) WHERE { ?p property:P682 resource:Q21107328 . ?p rdf:type ontology:Q181394 } } . FILTER ( ?g < ?k ) }
detoxification of zinc ion acrosome matrix dispersal dormancy process pronuclear fusion manchette assembly protein activation cascade regulation of transcription involved in meiotic cell cycle fertilization, exchange of chromosomal proteins nitric oxide storage multi-organism cellular process gene conversion at mating-type locus, DNA double-strand break formation menstrual cycle phase activation of immune response cell cycle process gene conversion at mating-type locus, DNA repair synthesis growth involved in symbiotic interaction phenotypic switching
detoxification of zinc ion acrosome matrix dispersal pronuclear fusion
action less
action find_reverse_tuple_counts
relation biological process
type biological process
type nutrient
action count
action filter_type
action find_reverse
entity development involved in symbiotic interaction
relation biological process
type nutrient
[{'concept': 'nutrient'}, 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?d WHERE { { SELECT DISTINCT ?d ( COUNT ( ?r ) AS ?g ) WHERE { ?r property:biological_process ?d . ?r rdf:type ontology:nutrient . ?d rdf:type ontology:biological_process } GROUP BY ?d } . { SELECT DISTINCT ( COUNT ( ?p ) AS ?k ) WHERE { ?p property:biological_process resource:development_involved_in_symbiotic_interaction . ?p rdf:type ontology:nutrient } } . FILTER ( ?g < ?k ) }
[]
Clarification
Comparative|Count over More/Less|Single entity type|Indirect
P361
Q5962346 Q2996394
USER
How many biological processes are a component of lesser number of classification schemes than that biological process ?
(c(Q2996394),P361,c(Q5962346))
[{'concept': 'Q2996394'}, 'P361', {'concept': 'Q5962346'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?x ) WHERE { ?z property:P361 ?y . ?z rdf:type ontology:Q2996394 . ?y rdf:type ontology:Q5962346 }
[{'concept': 'biological process'}, 'part of', {'concept': 'classification scheme'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?x ) WHERE { ?z property:part_of ?y . ?z rdf:type ontology:biological_process . ?y rdf:type ontology:classification_scheme }
[]
classification scheme biological process
Comparative|Count over More/Less|Single entity type|Clarification
Q14864899
SYSTEM
Did you mean acrosome matrix dispersal ?
(c(Q2996394),P361,c(Q5962346))
[ANSWER]
[{'concept': 'Q2996394'}, 'P361', {'concept': 'Q5962346'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?x ) WHERE { ?z property:P361 ?y . ?z rdf:type ontology:Q2996394 . ?y rdf:type ontology:Q5962346 }
Did you mean acrosome matrix dispersal ?
acrosome matrix dispersal
[{'concept': 'biological process'}, 'part of', {'concept': 'classification scheme'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?x ) WHERE { ?z property:part_of ?y . ?z rdf:type ontology:biological_process . ?y rdf:type ontology:classification_scheme }
[]
Comparative Reasoning (Count) (All)
USER
No, I meant detoxification of zinc ion. Could you tell me the answer for that?
(c(Q2996394),P361,c(Q5962346))
Q22271492
[{'concept': 'Q2996394'}, 'P361', {'concept': 'Q5962346'}]
[{'concept': 'biological process'}, 'part of', {'concept': 'classification scheme'}]
[]
SYSTEM
131
Q22294591 Q22294593 Q22290970 Q22294595 Q22272234 Q14862258 Q24457453 Q21107328 Q14904219 Q83944 Q22289032 Q22271492 Q22271494 Q22294752 Q21368803 Q17342249 Q22294585 Q21122953 Q21104659 Q22294615 Q14860198 Q15325345 Q1115221 Q1759895 Q24459941 Q22291478 Q949618 Q14897640 Q21116174 Q14877671 Q21097540 Q14864099 Q21103041 Q21444598 Q21136671 Q22280551 Q21111890 Q22292538 Q14863654 Q22269731 Q22271536 Q22279989 Q27122058 Q14865397 Q22294630 Q14859996 Q14865659 Q14914558 Q22294730 Q21171796 Q22294732 Q22294734 Q22294736 Q22294738 Q22294637 Q22269960 Q21149516 Q22279515 Q22279517 Q22281166 Q11995 Q22284167 Q22289068 Q16007097 Q22279591 Q22289779 Q22294644 Q22294647 Q15320925 Q22291145 Q22294723 Q22311434 Q163261 Q22294726 Q22294880 Q614138 Q22294728 Q22294486 Q21127160 Q22269715 Q21750263 Q333666 Q22289309 Q22293217 Q22284494 Q22270384 Q22291156 Q22294650 Q21106668 Q22255228 Q22280424 Q14904764 Q21104990 Q14863664 Q22294461 Q22250139 Q21111494 Q22272687 Q17304930 Q22283440 Q22284328 Q21108938 Q14864210 Q22302766 Q21106018 Q22294463 Q14864899 Q22271479 Q14904772 Q14904771 Q14912956 Q21108839 Q22311529 Q22279704 Q22282635 Q21104832 Q22253821 Q21124921 Q22294678 Q22269699 Q22273805 Q22284232 Q21115753 Q24459846 Q14873676 Q22269557 Q21104842 Q21132115 Q21114820 Q22253568 Q22272875
(c(Q2996394),P361,c(Q5962346))
[ANSWER]
[{'concept': 'Q2996394'}, 'P361', {'concept': 'Q5962346'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?x ) WHERE { ?z property:P361 ?y . ?z rdf:type ontology:Q2996394 . ?y rdf:type ontology:Q5962346 }
mitotic cell cycle arrest in response to pheromone cell wall organization involved in conjugation with cellular fusion protein localization to meiotic spindle pole body reproductive behavior detection of stimulus involved in meiotic cell cycle checkpoint dopamine uptake involved in synaptic transmission induction of synaptic vesicle exocytosis by positive regulation of presynaptic cytosolic calcium ion concentration development involved in symbiotic interaction developmental process involved in reproduction human evolution actomyosin contractile ring localization detoxification of zinc ion detoxification of arsenic-containing substance modification of morphology or physiology of other organism watercraft rowing Ethical attitude adaptation of signaling pathway by response to pheromone involved in conjugation with cellular fusion male pronucleus assembly detoxification of nitrogen compound luteinizing hormone signaling pathway involved in ovarian follicle development anatomical structure formation involved in morphogenesis pronuclear fusion mores coping manchette assembly pole plasm protein localization Taxis synaptic vesicle docking synaptic vesicle targeting cartilage condensation DNA methylation involved in gamete generation ovulation cycle process protein unfolding positive regulation of flagellated sperm motility involved in capacitation female pronucleus assembly gene conversion at mating-type locus, termination of copy-synthesis synaptic vesicle priming cytoplasmic transport, nurse cell to oocyte multicellular organismal reproductive process movement in environment of other organism involved in symbiotic interaction response to pheromone involved in conjugation with cellular fusion gene conversion at mating-type locus, DNA double-strand break processing synaptic vesicle tethering involved in synaptic vesicle exocytosis T cell selection fusome organization mesenchymal smoothened signaling pathway involved in prostate gland development tolerance induction nitrogen compound metabolic process karyogamy involved in conjugation with cellular fusion nitric oxide storage maintenance of floral organ identity negative regulation of progesterone biosynthesis involved in luteolysis transmembrane receptor protein serine/threonine kinase signaling pathway involved in floral organ abscission cell adhesion involved in prostatic bud elongation karyosome formation pollen tube guidance organic substance metabolic process gene conversion at mating-type locus heteroduplex formation involved in gene conversion at mating-type locus gene conversion at mating-type locus, DNA double-strand break formation pregnancy peptidyl-serine phosphorylation involved in acrosome reaction pole plasm RNA localization habit strand invasion involved in gene conversion at mating-type locus bicoid mRNA localization Wnt signaling pathway involved in animal/vegetal axis specification female germline ring canal formation, actin assembly locomotion involved in locomotory behavior establishment of oocyte nucleus localization involved in oocyte dorsal/ventral axis specification nurse cell nucleus anchoring B cell selection acrosome reaction DNA recombinase assembly involved in gene conversion at mating-type locus acquisition of nutrients from other organism during symbiotic interaction vital function seed oilbody biogenesis signal transduction involved in meiotic cell cycle checkpoint fertilization, exchange of chromosomal proteins budding cell bud growth FtsZ-dependent cytokinesis abscission oocyte nucleus localization involved in oocyte dorsal/ventral axis specification oocyte localization involved in germarium-derived egg chamber formation reproductive process in single-celled organism dissemination or transmission of organism from other organism involved in symbiotic interaction pronuclear migration generative cell mitosis synaptic vesicle fusion to presynaptic active zone membrane regulation of transcription from RNA polymerase II promoter involved in spermatogenesis somatic diversification of immune receptors primary ovarian follicle growth spermatid nucleus differentiation neurotransmitter secretion border follicle cell delamination meiotic cell cycle process activation of meiosis involved in egg activation response to stimulus involved in regulation of muscle adaptation cell cycle process mucilage metabolic process involved in seed coat development peptide mating pheromone maturation involved in conjugation with cellular fusion preantral ovarian follicle growth anatomical structure morphogenesis calcium-dependent activation of synaptic vesicle fusion cell separation after cytokinesis sperm chromatin decondensation acrosome matrix dispersal mycothiol-dependent detoxification spermatogenesis, exchange of chromosomal proteins sperm chromatin condensation ovarian cumulus expansion adhesion of symbiont to host antigen sampling in mucosal-associated lymphoid tissue gene conversion at mating-type locus, DNA repair synthesis cell wall macromolecule catabolic process involved in cytogamy synaptic vesicle exocytosis regulation of transcription involved in meiotic cell cycle P granule organization secondary cell wall biogenesis involved in seed trichome differentiation growth involved in symbiotic interaction photoperiodism, flowering signal transduction involved in conjugation with cellular fusion behavioral response to nutrient intermicrovillar adhesion cell motility uterine wall growth chromosome localization to nuclear envelope involved in homologous chromosome segregation prevention of polyspermy spermatid nucleus elongation positive regulation of transcription involved in egg activation detection of stimulus involved in meiotic spindle checkpoint
131
[{'concept': 'biological process'}, 'part of', {'concept': 'classification scheme'}]
SELECT DISTINCT ( COUNT ( ?z ) AS ?x ) WHERE { ?z property:part_of ?y . ?z rdf:type ontology:biological_process . ?y rdf:type ontology:classification_scheme }
[]