Simple Question (Direct)
Simple Question
Q24253897
P681
Q5058355
USER
What is a component of alanine dehydrogenase    lmo1579 ?
(Q24253897,P681,c(Q5058355))
action filter_type
action find
entity Q24253897
relation P681
type Q5058355
['Q24253897', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?k WHERE { resource:Q24253897 property:P681 ?k . ?k rdf:type ontology:Q5058355 }
alanine dehydrogenase    lmo1579
action filter_type
action find
entity alanine dehydrogenase    lmo1579
relation cell component
type cellular component
['alanine dehydrogenase    lmo1579', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?k WHERE { resource:alanine_dehydrogenase____lmo1579 property:cell_component ?k . ?k rdf:type ontology:cellular_component }
[]
cellular component
Q29548
SYSTEM
plasma membrane
Q29548
(Q24253897,P681,c(Q5058355))
action filter_type
action find
entity Q24253897
relation P681
type Q5058355
A component of alanine dehydrogenase lmo1579 is the [ANSWER]
['Q24253897', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?k WHERE { resource:Q24253897 property:P681 ?k . ?k rdf:type ontology:Q5058355 }
plasma membrane
A component of alanine dehydrogenase lmo1579 is the plasma membrane
plasma membrane
action filter_type
action find
entity alanine dehydrogenase    lmo1579
relation cell component
type cellular component
['alanine dehydrogenase    lmo1579', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?k WHERE { resource:alanine_dehydrogenase____lmo1579 property:cell_component ?k . ?k rdf:type ontology:cellular_component }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q24253897
P688
Q863908
USER
Which nucleic acid sequence encodes alanine dehydrogenase    lmo1579 ?
(c(Q863908),P688,Q24253897)
action filter_type
action find_reverse
entity Q24253897
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q24253897']
SELECT DISTINCT ?i WHERE { ?i property:P688 resource:Q24253897 . ?i rdf:type ontology:Q863908 }
alanine dehydrogenase    lmo1579
action filter_type
action find_reverse
entity alanine dehydrogenase    lmo1579
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'alanine dehydrogenase    lmo1579']
SELECT DISTINCT ?i WHERE { ?i property:encodes resource:alanine_dehydrogenase____lmo1579 . ?i rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23238960
SYSTEM
alanine dehydrogenase    lmo1579
Q23238960
(c(Q863908),P688,Q24253897)
action filter_type
action find_reverse
entity Q24253897
relation P688
type Q863908
Alanine dehydrogenase lmo1579 encodes alanine dehydrogenase lmo1579
[{'concept': 'Q863908'}, 'P688', 'Q24253897']
SELECT DISTINCT ?i WHERE { ?i property:P688 resource:Q24253897 . ?i rdf:type ontology:Q863908 }
alanine dehydrogenase    lmo1579
Alanine dehydrogenase lmo1579 encodes alanine dehydrogenase lmo1579
alanine dehydrogenase    lmo1579
action filter_type
action find_reverse
entity alanine dehydrogenase    lmo1579
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'alanine dehydrogenase    lmo1579']
SELECT DISTINCT ?i WHERE { ?i property:encodes resource:alanine_dehydrogenase____lmo1579 . ?i rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q24253897
P703
Q631147
USER
Which taxon does alanine dehydrogenase    lmo1579 belong to ?
(Q24253897,P703,c(Q631147))
action filter_type
action find
entity Q24253897
relation P703
type Q631147
['Q24253897', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?t WHERE { resource:Q24253897 property:P703 ?t . ?t rdf:type ontology:Q631147 }
alanine dehydrogenase    lmo1579
action filter_type
action find
entity alanine dehydrogenase    lmo1579
relation found in taxon
type infraspecific name
['alanine dehydrogenase    lmo1579', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?t WHERE { resource:alanine_dehydrogenase____lmo1579 property:found_in_taxon ?t . ?t rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102981
SYSTEM
Listeria monocytogenes EGD-e
Q21102981
(Q24253897,P703,c(Q631147))
action filter_type
action find
entity Q24253897
relation P703
type Q631147
Alanine dehydrogenase lmo1579 belongs [ANSWER]
['Q24253897', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?t WHERE { resource:Q24253897 property:P703 ?t . ?t rdf:type ontology:Q631147 }
Listeria monocytogenes EGD-e
Alanine dehydrogenase lmo1579 belongs Listeria monocytogenes EGD-e
Listeria monocytogenes EGD-e
action filter_type
action find
entity alanine dehydrogenase    lmo1579
relation found in taxon
type infraspecific name
['alanine dehydrogenase    lmo1579', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?t WHERE { resource:alanine_dehydrogenase____lmo1579 property:found_in_taxon ?t . ?t rdf:type ontology:infraspecific_name }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type
Q24253897
P702
Q863908
USER
How many nucleic acid sequences are the gene that encodes alanine dehydrogenase    lmo1579 ?
(Q24253897,P702,c(Q863908))
action count
action filter_type
action find
entity Q24253897
relation P702
type Q863908
['Q24253897', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ( COUNT ( ?h ) AS ?w ) WHERE { resource:Q24253897 property:P702 ?h . ?h rdf:type ontology:Q863908 }
alanine dehydrogenase    lmo1579
action count
action filter_type
action find
entity alanine dehydrogenase    lmo1579
relation encoded by
type nucleic acid sequence
['alanine dehydrogenase    lmo1579', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ( COUNT ( ?h ) AS ?w ) WHERE { resource:alanine_dehydrogenase____lmo1579 property:encoded_by ?h . ?h rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
SYSTEM
1
Q23238960
(Q24253897,P702,c(Q863908))
action count
action filter_type
action find
entity Q24253897
relation P702
type Q863908
[ANSWER]
['Q24253897', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ( COUNT ( ?h ) AS ?w ) WHERE { resource:Q24253897 property:P702 ?h . ?h rdf:type ontology:Q863908 }
alanine dehydrogenase    lmo1579
1
action count
action filter_type
action find
entity alanine dehydrogenase    lmo1579
relation encoded by
type nucleic acid sequence
['alanine dehydrogenase    lmo1579', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ( COUNT ( ?h ) AS ?w ) WHERE { resource:alanine_dehydrogenase____lmo1579 property:encoded_by ?h . ?h rdf:type ontology:nucleic_acid_sequence }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23452557 Q24253897
P702
Q863908
USER
Which nucleic acid sequences genes encode alanine dehydrogenase    lmo1579 or hypothetical protein    BF4560 ?
OR((Q24253897,P702,c(Q863908)), (Q23452557,P702,c(Q863908)))
action filter_type
action union
action find
entity Q24253897
relation P702
action find
entity Q23452557
relation P702
type Q863908
{'OR': [['Q24253897', 'P702', {'concept': 'Q863908'}], ['Q23452557', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?p WHERE { { VALUES ( ?o ) { ( resource:Q24253897 ) ( resource:Q23452557 ) } . ?o property:P702 ?p } . ?p rdf:type ontology:Q863908 }
hypothetical protein    BF4560 alanine dehydrogenase    lmo1579
action filter_type
action union
action find
entity alanine dehydrogenase    lmo1579
relation encoded by
action find
entity hypothetical protein    BF4560
relation encoded by
type nucleic acid sequence
{'OR': [['alanine dehydrogenase    lmo1579', 'encoded by', {'concept': 'nucleic acid sequence'}], ['hypothetical protein    BF4560', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?p WHERE { { VALUES ( ?o ) { ( resource:alanine_dehydrogenase____lmo1579 ) ( resource:hypothetical_protein____BF4560 ) } . ?o property:encoded_by ?p } . ?p rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23238960 Q23109936
SYSTEM
alanine dehydrogenase    lmo1579, hypothetical protein    BF4560
Q23238960 Q23109936
OR((Q24253897,P702,c(Q863908)), (Q23452557,P702,c(Q863908)))
action filter_type
action union
action find
entity Q24253897
relation P702
action find
entity Q23452557
relation P702
type Q863908
[ANSWERS]
{'OR': [['Q24253897', 'P702', {'concept': 'Q863908'}], ['Q23452557', 'P702', {'concept': 'Q863908'}]]}
SELECT DISTINCT ?p WHERE { { VALUES ( ?o ) { ( resource:Q24253897 ) ( resource:Q23452557 ) } . ?o property:P702 ?p } . ?p rdf:type ontology:Q863908 }
alanine dehydrogenase    lmo1579 hypothetical protein    BF4560
Alanine dehydrogenase lmo1579 and hypothetical protein BF4560 encode alanine dehydrogenase lmo1579 or hypothetical protein BF4560
alanine dehydrogenase    lmo1579 hypothetical protein    BF4560
action filter_type
action union
action find
entity alanine dehydrogenase    lmo1579
relation encoded by
action find
entity hypothetical protein    BF4560
relation encoded by
type nucleic acid sequence
{'OR': [['alanine dehydrogenase    lmo1579', 'encoded by', {'concept': 'nucleic acid sequence'}], ['hypothetical protein    BF4560', 'encoded by', {'concept': 'nucleic acid sequence'}]]}
SELECT DISTINCT ?p WHERE { { VALUES ( ?o ) { ( resource:alanine_dehydrogenase____lmo1579 ) ( resource:hypothetical_protein____BF4560 ) } . ?o property:encoded_by ?p } . ?p rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q23451891
Q863908
USER
And what about hypothetical protein    BF0428?
(Q23451891,P702,c(Q863908))
action filter_type
action find
entity Q23451891
relation P702
type Q863908
['Q23451891', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?y WHERE { resource:Q23451891 property:P702 ?y . ?y rdf:type ontology:Q863908 }
hypothetical protein    BF0428
action filter_type
action find
entity hypothetical protein    BF0428
relation encoded by
type nucleic acid sequence
['hypothetical protein    BF0428', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?y WHERE { resource:hypothetical_protein____BF0428 property:encoded_by ?y . ?y rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23108578
SYSTEM
hypothetical protein    BF0428
Q23108578
(Q23451891,P702,c(Q863908))
action filter_type
action find
entity Q23451891
relation P702
type Q863908
[ANSWER]
['Q23451891', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?y WHERE { resource:Q23451891 property:P702 ?y . ?y rdf:type ontology:Q863908 }
hypothetical protein    BF0428
hypothetical protein    BF0428
action filter_type
action find
entity hypothetical protein    BF0428
relation encoded by
type nucleic acid sequence
['hypothetical protein    BF0428', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?y WHERE { resource:hypothetical_protein____BF0428 property:encoded_by ?y . ?y rdf:type ontology:nucleic_acid_sequence }
[]
Quantitative Reasoning (All)
Quantitative|Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P361
Q223557 Q5058355 Q5058355
USER
Which cellular components are a part of around 1 physical objects and cellular components ?
(c(Q5058355),P361,c(Q223557)|c(Q5058355))
action approx
action union
action find_tuple_counts
relation P361
type Q5058355
type Q223557
action find_tuple_counts
relation P361
type Q5058355
type Q5058355
value 1
[{'concept': 'Q5058355'}, 'P361', [{'concept': 'Q223557'}, {'concept': 'Q5058355'}]]
SELECT DISTINCT ?p WHERE { FILTER ( ?t = 1 ) . { SELECT DISTINCT ( COUNT ( ?l ) AS ?t ) ?p WHERE { ?l rdf:type ?a . VALUES ( ?a ) { ( ontology:Q5058355 ) ( ontology:Q223557 ) } } GROUP BY ?p } }
action approx
action union
action find_tuple_counts
relation part of
type cellular component
type physical object
action find_tuple_counts
relation part of
type cellular component
type cellular component
value 1
[{'concept': 'cellular component'}, 'part of', [{'concept': 'physical object'}, {'concept': 'cellular component'}]]
SELECT DISTINCT ?p WHERE { FILTER ( ?t = 1 ) . { SELECT DISTINCT ( COUNT ( ?l ) AS ?t ) ?p WHERE { ?l rdf:type ?a . VALUES ( ?a ) { ( ontology:cellular_component ) ( ontology:physical_object ) } } GROUP BY ?p } }
[]
physical object cellular component cellular component
Q22328601 Q24576568 Q24576567
SYSTEM
H-NS complex, extracellular matrix of synaptic cleft, perisynaptic extracellular matrix
Q22327293 Q14329032 Q22327448 Q21116315 Q14876131 Q14878067 Q22327403 Q14864977 Q22327994 Q22327995 Q22327623 Q22327621 Q21116899 Q14860843 Q22327688 Q22327687 Q22327473 Q22329449 Q22327447 Q26253880 Q24576568 Q24576567 Q22330482 Q22325973 Q22326870 Q671136 Q22326873 Q21469807 Q22325381 Q24576572 Q22327513 Q22325480 Q21120634 Q3824358 Q22329021 Q21120639 Q22328085 Q22328655 Q22329861 Q22329866 Q22329864 Q22330033 Q22328495 Q22326802 Q22329161 Q22329160 Q22327284 Q22330462 Q22327411 Q22327413 Q22327412 Q22327419 Q22329158 Q21109092 Q14864382 Q22329157 Q22329857 Q22329856 Q22329855 Q22329854 Q22329852 Q24570696 Q22326943 Q21136996 Q22329858 Q14906187 Q22327494 Q22327529 Q22327407 Q22327654 Q22327653 Q22327524 Q22329849 Q22329847 Q21971414 Q21095089 Q22327498 Q22330052 Q22330059 Q22327493 Q22325375 Q24576587 Q21108411 Q22325981 Q21104759 Q21484280 Q22329402 Q22326951 Q24570673 Q22328769 Q14877492 Q22328074 Q22328762 Q22327083 Q14901717 Q22330234 Q22330236 Q22330238 Q14819441 Q21108403 Q14330626 Q22328839 Q24576590 Q24576591 Q21105674 Q22327509 Q21468808 Q14863683 Q22327505 Q22327502 Q22327501 Q22327500 Q24570705 Q14864390 Q14330629 Q21971286 Q21105988 Q21095308 Q22330225 Q22326845 Q22326843 Q79927 Q14876059 Q22327647 Q22327510 Q22327511 Q21112489 Q22327517 Q22329403 Q26253890 Q22328584 Q22327343 Q22327474 Q14860540 Q1640852 Q22327421 Q21115425 Q22328601 Q22327390 Q21095620
(c(Q5058355),P361,c(Q223557)|c(Q5058355))
action approx
action union
action find_tuple_counts
relation P361
type Q5058355
type Q223557
action find_tuple_counts
relation P361
type Q5058355
type Q5058355
value 1
[ANSWERS] are a part of around 1 physical objects and cellular components
[{'concept': 'Q5058355'}, 'P361', [{'concept': 'Q223557'}, {'concept': 'Q5058355'}]]
SELECT DISTINCT ?p WHERE { FILTER ( ?t = 1 ) . { SELECT DISTINCT ( COUNT ( ?l ) AS ?t ) ?p WHERE { ?l rdf:type ?a . VALUES ( ?a ) { ( ontology:Q5058355 ) ( ontology:Q223557 ) } } GROUP BY ?p } }
ciliary part endoplasmic reticulum membrane interleukin-35 complex viral nucleocapsid compact myelin organelle membrane PTEX complex plasma membrane part rhoptry rhoptry membrane lumenal side of membrane leaflet of membrane bilayer complement component C1 complex nuclear outer membrane prospore membrane leading edge prospore membrane spindle pole body attachment site intrinsic component of organelle membrane lateral shield interleukin-27 complex extrinsic component of postsynaptic endosome membrane extracellular matrix of synaptic cleft perisynaptic extracellular matrix ventral disc supernumerary microtubule array larval serum protein complex DAPK1-calmodulin complex synaptic vesicle cell division site part dolichyl-phosphate-mannose-protein mannosyltransferase complex HU-DNA complex presynaptic endosome membrane postsynaptic specialization extracellular matrix component interleukin-12 complex intracellular apical complex interleukin-23 complex external encapsulating structure cell septum part viral capsid, decoration virus tail, major subunit virus tail, minor subunit capsomere spitzenkorper endoplasmic reticulum palmitoyltransferase complex ventral disc lateral crest ventral disc overlap zone cell projection part longitudinal side of cell surface extracellular space of host extrahaustorial matrix extra-invasive hyphal space inhibin complex ventral disc dorsal microribbon nuclear outer membrane-endoplasmic reticulum membrane network presynaptic active zone ventral disc crossbridge virus tail, fiber virus tail, baseplate virus tail, tube virus tail, sheath virus tail, shaft extrinsic component of spine apparatus membrane fatty acid elongase complex immunoglobulin complex, circulating virus tail, tip CRLF-CLCF1 complex postsynaptic endosome presynaptic grid activin complex annulate lamellae membrane region presynaptic active zone dense projection icosahedral viral capsid, collar fiber icosahedral viral capsid, neck fiber plasma lipoprotein particle blood microparticle postsynaptic endocytic zone dinoflagellate antapex cell surface furrow extrinsic component of synaptic vesicle membrane IHF-DNA complex intrinsic component of postsynaptic endosome membrane CNTFR-CLCF1 complex classical-complement-pathway C3/C5 convertase complex perinuclear endoplasmic reticulum membrane retromer, cargo-selective complex inner membrane complex oxidoreductase complex postsynaptic endosome membrane viral portal complex lateral loop rhoptry lumen Dxr protein complex PTEN phosphatase complex intracellular part basal ring of apical complex dinoflagellate apex polar ring of apical complex fibrinogen complex synaptic vesicle lumen myelin sheath abaxonal region viral scaffold intrinsic component of presynaptic endosome membrane intrinsic component of spine apparatus membrane Nem1-Spo7 phosphatase complex postsynaptic cytosol retromer, tubulation complex insulin-like growth factor binding protein complex presynaptic endosome presynaptic active zone cytoplasmic component presynaptic endocytic zone cytoplasmic component presynaptic endocytic zone postsynaptic endocytic zone cytoplasmic component synaptic vesicle membrane myelin sheath adaxonal region oligosaccharyltransferase complex stereocilium membrane retromer complex rhoptry neck intracellular organelle part Dsc E3 ubiquitin ligase complex endoplasmic reticulum phosphatidylinositol 3-kinase complex external encapsulating structure part presynaptic cytosol postsynaptic cytoskeleton stereocilium tip presynaptic cytoskeleton basal labyrinth extrinsic component of presynaptic endosome membrane Kibra-Ex-Mer complex plasma membrane-derived photosystem I intrinsic component of synaptic vesicle membrane clathrin-coated pit Schmidt-Lanterman incisure bursicon neuropeptide hormone complex Ire1 complex H-NS complex symbiont-containing vacuolar membrane network Flemming body
H-NS complex, extracellular matrix of synaptic cleft and perisynaptic extracellular matrix are a part of around 1 physical objects and cellular components
H-NS complex extracellular matrix of synaptic cleft perisynaptic extracellular matrix
action approx
action union
action find_tuple_counts
relation part of
type cellular component
type physical object
action find_tuple_counts
relation part of
type cellular component
type cellular component
value 1
[{'concept': 'cellular component'}, 'part of', [{'concept': 'physical object'}, {'concept': 'cellular component'}]]
SELECT DISTINCT ?p WHERE { FILTER ( ?t = 1 ) . { SELECT DISTINCT ( COUNT ( ?l ) AS ?t ) ?p WHERE { ?l rdf:type ?a . VALUES ( ?a ) { ( ontology:cellular_component ) ( ontology:physical_object ) } } GROUP BY ?p } }
[]