Simple Question (Direct)
Simple Question
Q27547645
P681
Q15989253
USER
Which is the cell component of Ioc4p YMR044W ?
(Q27547645,P681,c(Q15989253))
action filter_type
action find
entity Q27547645
relation P681
type Q15989253
['Q27547645', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?r WHERE { resource:Q27547645 property:P681 ?r . ?r rdf:type ontology:Q15989253 }
Ioc4p YMR044W
action filter_type
action find
entity Ioc4p YMR044W
relation cell component
type part
['Ioc4p YMR044W', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?r WHERE { resource:Ioc4p_YMR044W property:cell_component ?r . ?r rdf:type ontology:part }
[]
part
Q40260
SYSTEM
nucleus
Q40260
(Q27547645,P681,c(Q15989253))
action filter_type
action find
entity Q27547645
relation P681
type Q15989253
The cell component of Ioc4p YMR044 W is the [ANSWER]
['Q27547645', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?r WHERE { resource:Q27547645 property:P681 ?r . ?r rdf:type ontology:Q15989253 }
nucleus
The cell component of Ioc4p YMR044 W is the nucleus
nucleus
action filter_type
action find
entity Ioc4p YMR044W
relation cell component
type part
['Ioc4p YMR044W', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?r WHERE { resource:Ioc4p_YMR044W property:cell_component ?r . ?r rdf:type ontology:part }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q27547645
P702
Q863908
USER
Which nucleic acid sequence encodes Ioc4p YMR044W ?
(Q27547645,P702,c(Q863908))
action filter_type
action find
entity Q27547645
relation P702
type Q863908
['Q27547645', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?h WHERE { resource:Q27547645 property:P702 ?h . ?h rdf:type ontology:Q863908 }
Ioc4p YMR044W
action filter_type
action find
entity Ioc4p YMR044W
relation encoded by
type nucleic acid sequence
['Ioc4p YMR044W', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?h WHERE { resource:Ioc4p_YMR044W property:encoded_by ?h . ?h rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q27540452
SYSTEM
Ioc4p YMR044W
Q27540452
(Q27547645,P702,c(Q863908))
action filter_type
action find
entity Q27547645
relation P702
type Q863908
[ANSWER] encodes [ANSWER]
['Q27547645', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?h WHERE { resource:Q27547645 property:P702 ?h . ?h rdf:type ontology:Q863908 }
Ioc4p YMR044W
Ioc4p YMR044W encodes Ioc4p YMR044W
Ioc4p YMR044W
action filter_type
action find
entity Ioc4p YMR044W
relation encoded by
type nucleic acid sequence
['Ioc4p YMR044W', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?h WHERE { resource:Ioc4p_YMR044W property:encoded_by ?h . ?h rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q27762452
Q863908
USER
And also tell me about hypothetical protein    TM0991?
(Q27762452,P702,c(Q863908))
action filter_type
action find
entity Q27762452
relation P702
type Q863908
['Q27762452', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?g WHERE { resource:Q27762452 property:P702 ?g . ?g rdf:type ontology:Q863908 }
hypothetical protein    TM0991
action filter_type
action find
entity hypothetical protein    TM0991
relation encoded by
type nucleic acid sequence
['hypothetical protein    TM0991', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?g WHERE { resource:hypothetical_protein____TM0991 property:encoded_by ?g . ?g rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23300230
SYSTEM
hypothetical protein    TM0991
Q23300230
(Q27762452,P702,c(Q863908))
action filter_type
action find
entity Q27762452
relation P702
type Q863908
[ANSWER]
['Q27762452', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?g WHERE { resource:Q27762452 property:P702 ?g . ?g rdf:type ontology:Q863908 }
hypothetical protein    TM0991
hypothetical protein    TM0991
action filter_type
action find
entity hypothetical protein    TM0991
relation encoded by
type nucleic acid sequence
['hypothetical protein    TM0991', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?g WHERE { resource:hypothetical_protein____TM0991 property:encoded_by ?g . ?g rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q27762452
P703
Q631147
USER
Where is that nutrient found ?
(Q23300230,P703,c(Q631147))
action filter_type
action find
entity Q27762452
relation P703
type Q631147
['Q23300230', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?d WHERE { resource:Q27762452 property:P703 ?d . ?d rdf:type ontology:Q631147 }
hypothetical protein    TM0991
action filter_type
action find
entity hypothetical protein    TM0991
relation found in taxon
type infraspecific name
['hypothetical protein    TM0991', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?d WHERE { resource:hypothetical_protein____TM0991 property:found_in_taxon ?d . ?d rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102991
SYSTEM
Thermotoga maritima MSB8
Q21102991
(Q23300230,P703,c(Q631147))
action filter_type
action find
entity Q27762452
relation P703
type Q631147
That nutrient is found in [ANSWER]
['Q23300230', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?d WHERE { resource:Q27762452 property:P703 ?d . ?d rdf:type ontology:Q631147 }
Thermotoga maritima MSB8
That nutrient is found in Thermotoga maritima MSB8
Thermotoga maritima MSB8
action filter_type
action find
entity hypothetical protein    TM0991
relation found in taxon
type infraspecific name
['hypothetical protein    TM0991', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?d WHERE { resource:hypothetical_protein____TM0991 property:found_in_taxon ?d . ?d rdf:type ontology:infraspecific_name }
[]
Logical Reasoning (All)
Logical|Intersection|Single_Relation|Incomplete
Q23299534 Q27762452
P703
Q631147
USER
And also peptide ABC transporter ATP-binding protein    TM0058
AND((Q27762452,P703,c(Q631147)), (Q23299534,P703,c(Q631147)))
action filter_type
action intersection
action find
entity Q27762452
relation P703
action find
entity Q23299534
relation P703
type Q631147
{'AND': [['Q27762452', 'P703', {'concept': 'Q631147'}], ['Q23299534', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?u WHERE { resource:Q27762452 property:P703 ?u . resource:Q23299534 property:P703 ?u . ?u rdf:type ontology:Q631147 }
peptide ABC transporter ATP-binding protein    TM0058 hypothetical protein    TM0991
action filter_type
action intersection
action find
entity hypothetical protein    TM0991
relation found in taxon
action find
entity peptide ABC transporter ATP-binding protein    TM0058
relation found in taxon
type infraspecific name
{'AND': [['hypothetical protein    TM0991', 'found in taxon', {'concept': 'infraspecific name'}], ['peptide ABC transporter ATP-binding protein    TM0058', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?u WHERE { resource:hypothetical_protein____TM0991 property:found_in_taxon ?u . resource:peptide_ABC_transporter_ATP-binding_protein____TM0058 property:found_in_taxon ?u . ?u rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102991
SYSTEM
Thermotoga maritima MSB8
Q21102991
AND((Q27762452,P703,c(Q631147)), (Q23299534,P703,c(Q631147)))
action filter_type
action intersection
action find
entity Q27762452
relation P703
action find
entity Q23299534
relation P703
type Q631147
[ANSWER]
{'AND': [['Q27762452', 'P703', {'concept': 'Q631147'}], ['Q23299534', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?u WHERE { resource:Q27762452 property:P703 ?u . resource:Q23299534 property:P703 ?u . ?u rdf:type ontology:Q631147 }
Thermotoga maritima MSB8
Thermotoga maritima MSB8
action filter_type
action intersection
action find
entity hypothetical protein    TM0991
relation found in taxon
action find
entity peptide ABC transporter ATP-binding protein    TM0058
relation found in taxon
type infraspecific name
{'AND': [['hypothetical protein    TM0991', 'found in taxon', {'concept': 'infraspecific name'}], ['peptide ABC transporter ATP-binding protein    TM0058', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?u WHERE { resource:hypothetical_protein____TM0991 property:found_in_taxon ?u . resource:peptide_ABC_transporter_ATP-binding_protein____TM0058 property:found_in_taxon ?u . ?u rdf:type ontology:infraspecific_name }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23216413 Q23300230
P703
Q631147
USER
Which infraspecific names are the taxon to which hypothetical protein    TM0991 or hypothetical protein    SSUBM407_1039 belongs to ?
OR((Q23300230,P703,c(Q631147)), (Q23216413,P703,c(Q631147)))
action filter_type
action union
action find
entity Q23300230
relation P703
action find
entity Q23216413
relation P703
type Q631147
{'OR': [['Q23300230', 'P703', {'concept': 'Q631147'}], ['Q23216413', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?p WHERE { { { resource:Q23300230 property:P703 ?p } UNION { resource:Q23216413 property:P703 ?p } } . ?p rdf:type ontology:Q631147 }
hypothetical protein    SSUBM407_1039 hypothetical protein    TM0991
action filter_type
action union
action find
entity hypothetical protein    TM0991
relation found in taxon
action find
entity hypothetical protein    SSUBM407_1039
relation found in taxon
type infraspecific name
{'OR': [['hypothetical protein    TM0991', 'found in taxon', {'concept': 'infraspecific name'}], ['hypothetical protein    SSUBM407_1039', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?p WHERE { { { resource:hypothetical_protein____TM0991 property:found_in_taxon ?p } UNION { resource:hypothetical_protein____SSUBM407_1039 property:found_in_taxon ?p } } . ?p rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102991 Q21102960
SYSTEM
Thermotoga maritima MSB8, Streptococcus suis BM407
Q21102991 Q21102960
OR((Q23300230,P703,c(Q631147)), (Q23216413,P703,c(Q631147)))
action filter_type
action union
action find
entity Q23300230
relation P703
action find
entity Q23216413
relation P703
type Q631147
[ANSWERS] are the taxon to which hypothetical protein TM0991 or hypothetical protein SSUBM407_1039 belongs to
{'OR': [['Q23300230', 'P703', {'concept': 'Q631147'}], ['Q23216413', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?p WHERE { { { resource:Q23300230 property:P703 ?p } UNION { resource:Q23216413 property:P703 ?p } } . ?p rdf:type ontology:Q631147 }
Thermotoga maritima MSB8 Streptococcus suis BM407
Thermotoga maritima MSB8 and Streptococcus suis BM407 are the taxon to which hypothetical protein TM0991 or hypothetical protein SSUBM407_1039 belongs to
Thermotoga maritima MSB8 Streptococcus suis BM407
action filter_type
action union
action find
entity hypothetical protein    TM0991
relation found in taxon
action find
entity hypothetical protein    SSUBM407_1039
relation found in taxon
type infraspecific name
{'OR': [['hypothetical protein    TM0991', 'found in taxon', {'concept': 'infraspecific name'}], ['hypothetical protein    SSUBM407_1039', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?p WHERE { { { resource:hypothetical_protein____TM0991 property:found_in_taxon ?p } UNION { resource:hypothetical_protein____SSUBM407_1039 property:found_in_taxon ?p } } . ?p rdf:type ontology:infraspecific_name }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23216413
P688
Q181394
USER
What is encoded by hypothetical protein    SSUBM407_1039?
(Q21102991,P688,c(Q181394)) (Q21102960,P688,c(Q181394))
action filter_type
action find
entity Q23216413
relation P688
type Q181394
['Q21102991', 'P688', {'concept': 'Q181394'}] ['Q21102960', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?t WHERE { resource:Q23216413 property:P688 ?t . ?t rdf:type ontology:Q181394 }
hypothetical protein    SSUBM407_1039
action filter_type
action find
entity hypothetical protein    SSUBM407_1039
relation encodes
type nutrient
['Thermotoga maritima MSB8', 'encodes', {'concept': 'nutrient'}] ['Streptococcus suis BM407', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?t WHERE { resource:hypothetical_protein____SSUBM407_1039 property:encodes ?t . ?t rdf:type ontology:nutrient }
[]
nutrient
Q23489952
SYSTEM
hypothetical protein    SSUBM407_1039
Q23489952
(Q21102991,P688,c(Q181394)) (Q21102960,P688,c(Q181394))
action filter_type
action find
entity Q23216413
relation P688
type Q181394
Hypothetical protein SSUBM407 1039 is encoded by hypothetical protein SSUBM407_1039
['Q21102991', 'P688', {'concept': 'Q181394'}] ['Q21102960', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?t WHERE { resource:Q23216413 property:P688 ?t . ?t rdf:type ontology:Q181394 }
hypothetical protein    SSUBM407_1039
Hypothetical protein SSUBM407 1039 is encoded by hypothetical protein SSUBM407_1039
hypothetical protein    SSUBM407_1039
action filter_type
action find
entity hypothetical protein    SSUBM407_1039
relation encodes
type nutrient
['Thermotoga maritima MSB8', 'encodes', {'concept': 'nutrient'}] ['Streptococcus suis BM407', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?t WHERE { resource:hypothetical_protein____SSUBM407_1039 property:encodes ?t . ?t rdf:type ontology:nutrient }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q23489952 Q14901672
P702
Q863908
USER
Does Sell encode hypothetical protein    SSUBM407_1039 ?
(Q23489952,P702,Q14901672)
action is_in
entity Q14901672
action find
entity Q23489952
relation P702
['Q23489952', 'P702', 'Q14901672']
ASK WHERE { resource:Q23489952 property:P702 resource:Q14901672 }
hypothetical protein    SSUBM407_1039 Sell
action is_in
entity Sell
action find
entity hypothetical protein    SSUBM407_1039
relation encoded by
['hypothetical protein    SSUBM407_1039', 'encoded by', 'Sell']
ASK WHERE { resource:hypothetical_protein____SSUBM407_1039 property:encoded_by resource:Sell }
[]
nucleic acid sequence
SYSTEM
NO
(Q23489952,P702,Q14901672)
action is_in
entity Q14901672
action find
entity Q23489952
relation P702
[ANSWER]
['Q23489952', 'P702', 'Q14901672']
ASK WHERE { resource:Q23489952 property:P702 resource:Q14901672 }
No
action is_in
entity Sell
action find
entity hypothetical protein    SSUBM407_1039
relation encoded by
['hypothetical protein    SSUBM407_1039', 'encoded by', 'Sell']
ASK WHERE { resource:hypothetical_protein____SSUBM407_1039 property:encoded_by resource:Sell }
[]
Logical Reasoning (All)
Logical|Intersection|Multiple_Relation
Q21102960 Q23216413
P703 P702
Q181394
USER
Which nutrients are encoded by hypothetical protein    SSUBM407_1039 and are found in the taxon Streptococcus suis BM407 ?
AND((c(Q181394),P702,Q23216413), (c(Q181394),P703,Q21102960))
action filter_type
action intersection
action find_reverse
entity Q23216413
relation P702
action find_reverse
entity Q21102960
relation P703
type Q181394
{'AND': [[{'concept': 'Q181394'}, 'P702', 'Q23216413'], [{'concept': 'Q181394'}, 'P703', 'Q21102960']]}
SELECT DISTINCT ?g WHERE { ?g property:P702 resource:Q23216413 . ?g property:P703 resource:Q21102960 . ?g rdf:type ontology:Q181394 }
Streptococcus suis BM407 hypothetical protein    SSUBM407_1039
action filter_type
action intersection
action find_reverse
entity hypothetical protein    SSUBM407_1039
relation encoded by
action find_reverse
entity Streptococcus suis BM407
relation found in taxon
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'encoded by', 'hypothetical protein    SSUBM407_1039'], [{'concept': 'nutrient'}, 'found in taxon', 'Streptococcus suis BM407']]}
SELECT DISTINCT ?g WHERE { ?g property:encoded_by resource:hypothetical_protein____SSUBM407_1039 . ?g property:found_in_taxon resource:Streptococcus_suis_BM407 . ?g rdf:type ontology:nutrient }
[]
nutrient
Q23489952
SYSTEM
hypothetical protein    SSUBM407_1039
Q23489952
AND((c(Q181394),P702,Q23216413), (c(Q181394),P703,Q21102960))
action filter_type
action intersection
action find_reverse
entity Q23216413
relation P702
action find_reverse
entity Q21102960
relation P703
type Q181394
Hypothetical protein SSUBM407 1039 is encoded by hypothetical protein SSUBM407_1039 and is found in the taxon Streptococcus suis BM407
{'AND': [[{'concept': 'Q181394'}, 'P702', 'Q23216413'], [{'concept': 'Q181394'}, 'P703', 'Q21102960']]}
SELECT DISTINCT ?g WHERE { ?g property:P702 resource:Q23216413 . ?g property:P703 resource:Q21102960 . ?g rdf:type ontology:Q181394 }
hypothetical protein    SSUBM407_1039
Hypothetical protein SSUBM407 1039 is encoded by hypothetical protein SSUBM407_1039 and is found in the taxon Streptococcus suis BM407
hypothetical protein    SSUBM407_1039
action filter_type
action intersection
action find_reverse
entity hypothetical protein    SSUBM407_1039
relation encoded by
action find_reverse
entity Streptococcus suis BM407
relation found in taxon
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'encoded by', 'hypothetical protein    SSUBM407_1039'], [{'concept': 'nutrient'}, 'found in taxon', 'Streptococcus suis BM407']]}
SELECT DISTINCT ?g WHERE { ?g property:encoded_by resource:hypothetical_protein____SSUBM407_1039 . ?g property:found_in_taxon resource:Streptococcus_suis_BM407 . ?g rdf:type ontology:nutrient }
[]