Simple Question (Direct)
Simple Question
Q27741468
P682
Q1057
USER
Which metabolic process is cytochrome P450    MSMEG_1167 involved in ?
(Q27741468,P682,c(Q1057))
action filter_type
action find
entity Q27741468
relation P682
type Q1057
['Q27741468', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?t WHERE { resource:Q27741468 property:P682 ?t . ?t rdf:type ontology:Q1057 }
cytochrome P450    MSMEG_1167
action filter_type
action find
entity cytochrome P450    MSMEG_1167
relation biological process
type metabolic process
['cytochrome P450    MSMEG_1167', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?t WHERE { resource:cytochrome_P450____MSMEG_1167 property:biological_process ?t . ?t rdf:type ontology:metabolic_process }
[]
metabolic process
Q14349764
SYSTEM
oxidation-reduction process
Q14349764
(Q27741468,P682,c(Q1057))
action filter_type
action find
entity Q27741468
relation P682
type Q1057
[ANSWER] is cytochrome P450 MSMEG_1167 involved in
['Q27741468', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?t WHERE { resource:Q27741468 property:P682 ?t . ?t rdf:type ontology:Q1057 }
oxidation-reduction process
Oxidation-reduction process is cytochrome P450 MSMEG_1167 involved in
oxidation-reduction process
action filter_type
action find
entity cytochrome P450    MSMEG_1167
relation biological process
type metabolic process
['cytochrome P450    MSMEG_1167', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?t WHERE { resource:cytochrome_P450____MSMEG_1167 property:biological_process ?t . ?t rdf:type ontology:metabolic_process }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q27741468
P703
Q631147
USER
Which taxon is cytochrome P450    MSMEG_1167 a part of ?
(Q27741468,P703,c(Q631147))
action filter_type
action find
entity Q27741468
relation P703
type Q631147
['Q27741468', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?s WHERE { resource:Q27741468 property:P703 ?s . ?s rdf:type ontology:Q631147 }
cytochrome P450    MSMEG_1167
action filter_type
action find
entity cytochrome P450    MSMEG_1167
relation found in taxon
type infraspecific name
['cytochrome P450    MSMEG_1167', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?s WHERE { resource:cytochrome_P450____MSMEG_1167 property:found_in_taxon ?s . ?s rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102986
SYSTEM
Mycobacterium smegmatis str. MC2 155
Q21102986
(Q27741468,P703,c(Q631147))
action filter_type
action find
entity Q27741468
relation P703
type Q631147
[ANSWER] is cytochrome P450 MSMEG_1167 a part of
['Q27741468', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?s WHERE { resource:Q27741468 property:P703 ?s . ?s rdf:type ontology:Q631147 }
Mycobacterium smegmatis str. MC2 155
Mycobacterium smegmatis str. MC2 155 is cytochrome P450 MSMEG_1167 a part of
Mycobacterium smegmatis str. MC2 155
action filter_type
action find
entity cytochrome P450    MSMEG_1167
relation found in taxon
type infraspecific name
['cytochrome P450    MSMEG_1167', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?s WHERE { resource:cytochrome_P450____MSMEG_1167 property:found_in_taxon ?s . ?s rdf:type ontology:infraspecific_name }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation|Incomplete
Q23239915 Q27741468
P703
Q631147
USER
Or hypothetical protein    BBPR_0549?
OR((Q27741468,P703,c(Q631147)), (Q23239915,P703,c(Q631147)))
action filter_type
action union
action find
entity Q27741468
relation P703
action find
entity Q23239915
relation P703
type Q631147
{'OR': [['Q27741468', 'P703', {'concept': 'Q631147'}], ['Q23239915', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?s WHERE { { VALUES ( ?k ) { ( resource:Q27741468 ) ( resource:Q23239915 ) } . ?k property:P703 ?s } . ?s rdf:type ontology:Q631147 }
hypothetical protein    BBPR_0549 cytochrome P450    MSMEG_1167
action filter_type
action union
action find
entity cytochrome P450    MSMEG_1167
relation found in taxon
action find
entity hypothetical protein    BBPR_0549
relation found in taxon
type infraspecific name
{'OR': [['cytochrome P450    MSMEG_1167', 'found in taxon', {'concept': 'infraspecific name'}], ['hypothetical protein    BBPR_0549', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?s WHERE { { VALUES ( ?k ) { ( resource:cytochrome_P450____MSMEG_1167 ) ( resource:hypothetical_protein____BBPR_0549 ) } . ?k property:found_in_taxon ?s } . ?s rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102986 Q21102982
SYSTEM
Mycobacterium smegmatis str. MC2 155, Bifidobacterium bifidum PRL2010
Q21102986 Q21102982
OR((Q27741468,P703,c(Q631147)), (Q23239915,P703,c(Q631147)))
action filter_type
action union
action find
entity Q27741468
relation P703
action find
entity Q23239915
relation P703
type Q631147
[ANSWERS]
{'OR': [['Q27741468', 'P703', {'concept': 'Q631147'}], ['Q23239915', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?s WHERE { { VALUES ( ?k ) { ( resource:Q27741468 ) ( resource:Q23239915 ) } . ?k property:P703 ?s } . ?s rdf:type ontology:Q631147 }
Mycobacterium smegmatis str. MC2 155 Bifidobacterium bifidum PRL2010
Mycobacterium smegmatis str. MC2 155 Bifidobacterium bifidum PRL2010
action filter_type
action union
action find
entity cytochrome P450    MSMEG_1167
relation found in taxon
action find
entity hypothetical protein    BBPR_0549
relation found in taxon
type infraspecific name
{'OR': [['cytochrome P450    MSMEG_1167', 'found in taxon', {'concept': 'infraspecific name'}], ['hypothetical protein    BBPR_0549', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?s WHERE { { VALUES ( ?k ) { ( resource:cytochrome_P450____MSMEG_1167 ) ( resource:hypothetical_protein____BBPR_0549 ) } . ?k property:found_in_taxon ?s } . ?s rdf:type ontology:infraspecific_name }
[]
Clarification
Comparative|More/Less|Single entity type|Indirect
P703
Q631147 Q863908
USER
Which infraspecific names do greater number of nucleic acid sequences belong to than that infraspecific name ?
(c(Q863908),P703,c(Q631147))
[{'concept': 'Q863908'}, 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?y WHERE { ?z property:P703 ?y . ?z rdf:type ontology:Q863908 . ?y rdf:type ontology:Q631147 }
[{'concept': 'nucleic acid sequence'}, 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?y WHERE { ?z property:found_in_taxon ?y . ?z rdf:type ontology:nucleic_acid_sequence . ?y rdf:type ontology:infraspecific_name }
[]
infraspecific name nucleic acid sequence
Comparative|More/Less|Single entity type|Clarification
Q21102986
SYSTEM
Did you mean Mycobacterium smegmatis str. MC2 155 ?
(c(Q863908),P703,c(Q631147))
[ANSWER]
[{'concept': 'Q863908'}, 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?y WHERE { ?z property:P703 ?y . ?z rdf:type ontology:Q863908 . ?y rdf:type ontology:Q631147 }
Did you mean Mycobacterium smegmatis str. MC2 155 ?
Mycobacterium smegmatis str. MC2 155
[{'concept': 'nucleic acid sequence'}, 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?y WHERE { ?z property:found_in_taxon ?y . ?z rdf:type ontology:nucleic_acid_sequence . ?y rdf:type ontology:infraspecific_name }
[]
Comparative Reasoning (All)
USER
Yes
(c(Q863908),P703,c(Q631147))
[{'concept': 'Q863908'}, 'P703', {'concept': 'Q631147'}]
[{'concept': 'nucleic acid sequence'}, 'found in taxon', {'concept': 'infraspecific name'}]
[]
Q21102998 Q21102988
SYSTEM
Amycolatopsis mediterranei U32, Streptomyces coelicolor A3(2)
Q21102998 Q21102988
(c(Q863908),P703,c(Q631147))
[ANSWERS] greater number of nucleic acid sequences belong to than that infraspecific name
[{'concept': 'Q863908'}, 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?y WHERE { ?z property:P703 ?y . ?z rdf:type ontology:Q863908 . ?y rdf:type ontology:Q631147 }
Amycolatopsis mediterranei U32 Streptomyces coelicolor A3(2)
Amycolatopsis mediterranei U32 and Streptomyces coelicolor A3(2) greater number of nucleic acid sequences belong to than that infraspecific name
Amycolatopsis mediterranei U32 Streptomyces coelicolor A3(2)
[{'concept': 'nucleic acid sequence'}, 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?y WHERE { ?z property:found_in_taxon ?y . ?z rdf:type ontology:nucleic_acid_sequence . ?y rdf:type ontology:infraspecific_name }
[]
Quantitative Reasoning (Count) (All)
Incomplete count-based ques
Q22229613
Q631147
USER
And how about ATP synthase subunit b/delta    Rv1307?
(Q22229613,P703,c(Q631147))
action count
action filter_type
action find
entity Q22229613
relation P703
type Q631147
['Q22229613', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ( COUNT ( ?g ) AS ?o ) WHERE { resource:Q22229613 property:P703 ?g . ?g rdf:type ontology:Q631147 }
ATP synthase subunit b/delta    Rv1307
action count
action filter_type
action find
entity ATP synthase subunit b/delta    Rv1307
relation found in taxon
type infraspecific name
['ATP synthase subunit b/delta    Rv1307', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ( COUNT ( ?g ) AS ?o ) WHERE { resource:ATP_synthase_subunit_b/delta____Rv1307 property:found_in_taxon ?g . ?g rdf:type ontology:infraspecific_name }
[]
infraspecific name
SYSTEM
1
(Q22229613,P703,c(Q631147))
action count
action filter_type
action find
entity Q22229613
relation P703
type Q631147
[ANSWER]
['Q22229613', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ( COUNT ( ?g ) AS ?o ) WHERE { resource:Q22229613 property:P703 ?g . ?g rdf:type ontology:Q631147 }
1
action count
action filter_type
action find
entity ATP synthase subunit b/delta    Rv1307
relation found in taxon
type infraspecific name
['ATP synthase subunit b/delta    Rv1307', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ( COUNT ( ?g ) AS ?o ) WHERE { resource:ATP_synthase_subunit_b/delta____Rv1307 property:found_in_taxon ?g . ?g rdf:type ontology:infraspecific_name }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q22229613
P688
Q181394
USER
Which nutrient is that nucleic acid sequence an encoding of ?
action filter_type
action find
entity Q22229613
relation P688
type Q181394
SELECT DISTINCT ?w WHERE { resource:Q22229613 property:P688 ?w . ?w rdf:type ontology:Q181394 }
ATP synthase subunit b/delta    Rv1307
action filter_type
action find
entity ATP synthase subunit b/delta    Rv1307
relation encodes
type nutrient
SELECT DISTINCT ?w WHERE { resource:ATP_synthase_subunit_b/delta____Rv1307 property:encodes ?w . ?w rdf:type ontology:nutrient }
[]
nutrient
Q22234297
SYSTEM
ATP synthase subunit b/delta    Rv1307
Q22234297
action filter_type
action find
entity Q22229613
relation P688
type Q181394
ATP synthase subunit b/delta Rv1307 is that nucleic acid sequence an encoding of
SELECT DISTINCT ?w WHERE { resource:Q22229613 property:P688 ?w . ?w rdf:type ontology:Q181394 }
ATP synthase subunit b/delta    Rv1307
ATP synthase subunit b/delta Rv1307 is that nucleic acid sequence an encoding of
ATP synthase subunit b/delta    Rv1307
action filter_type
action find
entity ATP synthase subunit b/delta    Rv1307
relation encodes
type nutrient
SELECT DISTINCT ?w WHERE { resource:ATP_synthase_subunit_b/delta____Rv1307 property:encodes ?w . ?w rdf:type ontology:nutrient }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, subject is indirect
Q22234297 Q21102987
P703
Q631147
USER
Is Mycobacterium tuberculosis H37Rv that nutrient found ?
(Q22234297,P703,Q21102987)
action is_in
entity Q21102987
action find
entity Q22234297
relation P703
['Q22234297', 'P703', 'Q21102987']
ASK WHERE { resource:Q22234297 property:P703 resource:Q21102987 }
ATP synthase subunit b/delta    Rv1307 Mycobacterium tuberculosis H37Rv
action is_in
entity Mycobacterium tuberculosis H37Rv
action find
entity ATP synthase subunit b/delta    Rv1307
relation found in taxon
['ATP synthase subunit b/delta    Rv1307', 'found in taxon', 'Mycobacterium tuberculosis H37Rv']
ASK WHERE { resource:ATP_synthase_subunit_b/delta____Rv1307 property:found_in_taxon resource:Mycobacterium_tuberculosis_H37Rv }
[]
infraspecific name
SYSTEM
YES
(Q22234297,P703,Q21102987)
action is_in
entity Q21102987
action find
entity Q22234297
relation P703
[ANSWER]
['Q22234297', 'P703', 'Q21102987']
ASK WHERE { resource:Q22234297 property:P703 resource:Q21102987 }
Yes
action is_in
entity Mycobacterium tuberculosis H37Rv
action find
entity ATP synthase subunit b/delta    Rv1307
relation found in taxon
['ATP synthase subunit b/delta    Rv1307', 'found in taxon', 'Mycobacterium tuberculosis H37Rv']
ASK WHERE { resource:ATP_synthase_subunit_b/delta____Rv1307 property:found_in_taxon resource:Mycobacterium_tuberculosis_H37Rv }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Mult. entity type
Q288395
P129
Q181394 Q79529 Q8386
USER
How many nutrients do around the same number of chemical substances and drugs communicate with as Histamine H3 receptor ?
(c(Q79529)|c(Q8386),P129,c(Q181394))
action count
action approx
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
action count
action filter_multi_types
action find_reverse
entity Q288395
relation P129
type Q79529
type Q8386
[[{'concept': 'Q79529'}, {'concept': 'Q8386'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?r ) AS ?m ) WHERE { { SELECT DISTINCT ( COUNT ( ?u ) AS ?j ) ?r WHERE { { ?r rdf:type ontology:Q181394 . ?u rdf:type ontology:Q8386 . ?u property:P129 ?r } UNION { ?u property:P129 ?r . ?r rdf:type ontology:Q181394 . ?u rdf:type ontology:Q79529 } } GROUP BY ?r } . { SELECT DISTINCT ( COUNT ( ?x ) AS ?d ) WHERE { ?x property:P129 resource:Q288395 . { { ?x rdf:type ontology:Q79529 } UNION { ?x rdf:type ontology:Q8386 } } } } . FILTER ( ?j = ?d ) }
Histamine H3 receptor
action count
action approx
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
action count
action filter_multi_types
action find_reverse
entity Histamine H3 receptor
relation physically interacts with
type chemical substance
type drug
[[{'concept': 'chemical substance'}, {'concept': 'drug'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?r ) AS ?m ) WHERE { { SELECT DISTINCT ( COUNT ( ?u ) AS ?j ) ?r WHERE { { ?r rdf:type ontology:nutrient . ?u rdf:type ontology:drug . ?u property:physically_interacts_with ?r } UNION { ?u property:physically_interacts_with ?r . ?r rdf:type ontology:nutrient . ?u rdf:type ontology:chemical_substance } } GROUP BY ?r } . { SELECT DISTINCT ( COUNT ( ?x ) AS ?d ) WHERE { ?x property:physically_interacts_with resource:Histamine_H3_receptor . { { ?x rdf:type ontology:chemical_substance } UNION { ?x rdf:type ontology:drug } } } } . FILTER ( ?j = ?d ) }
[]
nutrient chemical substance drug
SYSTEM
68
Q21110942 Q21116154 Q4847910 Q2271947 Q413209 Q2663095 Q21173164 Q21154358 Q21108624 Q21172390 Q1486720 Q287958 Q1084878 Q21126810 Q7671479 Q21109365 Q15323278 Q21110867 Q4847907 Q21116946 Q416601 Q5401858 Q5401857 Q4734887 Q4734886 Q21173381 Q21116162 Q21116164 Q5773155 Q21115334 Q21118353 Q21173406 Q288382 Q5513985 Q21114578 Q21114576 Q21131500 Q4897175 Q7673856 Q21115961 Q21115962 Q21115965 Q21497878 Q311568 Q3062781 Q12746120 Q5629167 Q21115815 Q21115816 Q21115819 Q288395 Q21108125 Q7834290 Q21114585 Q21114582 Q21497939 Q3454531 Q21497937 Q424401 Q5009781 Q21130911 Q21150595 Q15324694 Q21201294 Q7671477 Q21109359 Q15324415 Q5520260
(c(Q79529)|c(Q8386),P129,c(Q181394))
action count
action approx
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
action count
action filter_multi_types
action find_reverse
entity Q288395
relation P129
type Q79529
type Q8386
[ANSWER]
[[{'concept': 'Q79529'}, {'concept': 'Q8386'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?r ) AS ?m ) WHERE { { SELECT DISTINCT ( COUNT ( ?u ) AS ?j ) ?r WHERE { { ?r rdf:type ontology:Q181394 . ?u rdf:type ontology:Q8386 . ?u property:P129 ?r } UNION { ?u property:P129 ?r . ?r rdf:type ontology:Q181394 . ?u rdf:type ontology:Q79529 } } GROUP BY ?r } . { SELECT DISTINCT ( COUNT ( ?x ) AS ?d ) WHERE { ?x property:P129 resource:Q288395 . { { ?x rdf:type ontology:Q79529 } UNION { ?x rdf:type ontology:Q8386 } } } } . FILTER ( ?j = ?d ) }
G-protein coupled receptor 55 Adenosine receptor A3 Muscarinic acetylcholine receptor M2 Sodium-dependent dopamine transporter Transient receptor potential cation channel subfamily V member 1 Glucocorticoid receptor Carbonic anhydrase 1 Histone deacetylase 3 Platelet-derived growth factor receptor beta Vascular endothelial growth factor receptor 2 Glutamate receptor 3 Beta-1 adrenergic receptor Peroxisome proliferator-activated receptor gamma Prostaglandin G/H synthase 1 Transient receptor potential cation channel subfamily M member 3 5-hydroxytryptamine receptor 4 Transient receptor potential cation channel subfamily A member 1 D(1A) dopamine receptor Muscarinic acetylcholine receptor M4 Carbonic anhydrase 12 Androgen receptor Estrogen receptor Estrogen receptor beta Alpha-1D adrenergic receptor Alpha-1B adrenergic receptor Histone deacetylase 6 Adenosine receptor A2a Adenosine receptor A2b Histone deacetylase 2 Delta-type opioid receptor Vascular endothelial growth factor receptor 3 Histone deacetylase 8 Histamine H4 receptor Gonadotropin-releasing hormone receptor Gamma-aminobutyric acid receptor subunit alpha-3 Gamma-aminobutyric acid receptor subunit alpha-5 D(1B) dopamine receptor Beta-3 adrenergic receptor Substance-P receptor Glutamate receptor 1 Glutamate receptor 2 Glutamate receptor 4 G protein-activated inward rectifier potassium channel 2 Histamine H2 receptor Adenosine receptor A1 Muscarinic acetylcholine receptor M5 Histone deacetylase 1 Glutamate receptor ionotropic, NMDA 2A Glutamate receptor ionotropic, NMDA 2B Glutamate receptor ionotropic, NMDA 2C Histamine H3 receptor 5-hydroxytryptamine receptor 3A Transient receptor potential cation channel subfamily A member 1 Gamma-aminobutyric acid receptor subunit alpha-6 Gamma-aminobutyric acid receptor subunit alpha-2 5-hydroxytryptamine receptor 7 Mineralocorticoid receptor 5-hydroxytryptamine receptor 5A Epidermal growth factor receptor Receptor-type tyrosine-protein kinase FLT3 Glutamate receptor ionotropic, NMDA 2D Cannabinoid receptor 2 Transient receptor potential cation channel subfamily V member 3 Cannabinoid receptor 1 Transient receptor potential cation channel subfamily M member 2 5-hydroxytryptamine receptor 5A Transient receptor potential cation channel subfamily M member 8 Gamma-aminobutyric acid receptor subunit alpha-1
68
action count
action approx
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
action count
action filter_multi_types
action find_reverse
entity Histamine H3 receptor
relation physically interacts with
type chemical substance
type drug
[[{'concept': 'chemical substance'}, {'concept': 'drug'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?r ) AS ?m ) WHERE { { SELECT DISTINCT ( COUNT ( ?u ) AS ?j ) ?r WHERE { { ?r rdf:type ontology:nutrient . ?u rdf:type ontology:drug . ?u property:physically_interacts_with ?r } UNION { ?u property:physically_interacts_with ?r . ?r rdf:type ontology:nutrient . ?u rdf:type ontology:chemical_substance } } GROUP BY ?r } . { SELECT DISTINCT ( COUNT ( ?x ) AS ?d ) WHERE { ?x property:physically_interacts_with resource:Histamine_H3_receptor . { { ?x rdf:type ontology:chemical_substance } UNION { ?x rdf:type ontology:drug } } } } . FILTER ( ?j = ?d ) }
[]