Simple Question (Direct)
Simple Question
Q22162286
P702
Q863908
USER
What encodes sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595 ?
(Q22162286,P702,c(Q863908))
action filter_type
action find
entity Q22162286
relation P702
type Q863908
['Q22162286', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?m WHERE { resource:Q22162286 property:P702 ?m . ?m rdf:type ontology:Q863908 }
sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595
action filter_type
action find
entity sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595
relation encoded by
type nucleic acid sequence
['sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?m WHERE { resource:sensory_histidine_kinase_in_two-component_regulatory_system_with_citB____ECIAI39_0595 property:encoded_by ?m . ?m rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q22226441
SYSTEM
sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595
Q22226441
(Q22162286,P702,c(Q863908))
action filter_type
action find
entity Q22162286
relation P702
type Q863908
Sensory histidine kinase in two-component regulatory system with citB ECIAI39 0595 encodes sensory histidine kinase in two-component regulatory system with citB ECIAI39_0595
['Q22162286', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?m WHERE { resource:Q22162286 property:P702 ?m . ?m rdf:type ontology:Q863908 }
sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595
Sensory histidine kinase in two-component regulatory system with citB ECIAI39 0595 encodes sensory histidine kinase in two-component regulatory system with citB ECIAI39_0595
sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595
action filter_type
action find
entity sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595
relation encoded by
type nucleic acid sequence
['sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?m WHERE { resource:sensory_histidine_kinase_in_two-component_regulatory_system_with_citB____ECIAI39_0595 property:encoded_by ?m . ?m rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q22226441
P703
Q16521
USER
Which taxon is that nucleic acid sequence found in ?
(Q22226441,P703,c(Q16521))
action filter_type
action find
entity Q22226441
relation P703
type Q16521
['Q22226441', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?t WHERE { resource:Q22226441 property:P703 ?t . ?t rdf:type ontology:Q16521 }
sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595
action filter_type
action find
entity sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595
relation found in taxon
type taxon
['sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?t WHERE { resource:sensory_histidine_kinase_in_two-component_regulatory_system_with_citB____ECIAI39_0595 property:found_in_taxon ?t . ?t rdf:type ontology:taxon }
[]
taxon
Q21102933
SYSTEM
Escherichia coli IAI39
Q21102933
(Q22226441,P703,c(Q16521))
action filter_type
action find
entity Q22226441
relation P703
type Q16521
That nucleic acid sequence is found in [ANSWER]
['Q22226441', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?t WHERE { resource:Q22226441 property:P703 ?t . ?t rdf:type ontology:Q16521 }
Escherichia coli IAI39
That nucleic acid sequence is found in Escherichia coli IAI39
Escherichia coli IAI39
action filter_type
action find
entity sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595
relation found in taxon
type taxon
['sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?t WHERE { resource:sensory_histidine_kinase_in_two-component_regulatory_system_with_citB____ECIAI39_0595 property:found_in_taxon ?t . ?t rdf:type ontology:taxon }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q22226441
P688
Q181394
USER
Which nutrient is encoded by that nucleic acid sequence ?
(Q21102933,P688,c(Q181394))
action filter_type
action find
entity Q22226441
relation P688
type Q181394
['Q21102933', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?y WHERE { ?y rdf:type ontology:Q181394 . resource:Q22226441 property:P688 ?y }
sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595
action filter_type
action find
entity sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595
relation encodes
type nutrient
['Escherichia coli IAI39', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?y WHERE { ?y rdf:type ontology:nutrient . resource:sensory_histidine_kinase_in_two-component_regulatory_system_with_citB____ECIAI39_0595 property:encodes ?y }
[]
nutrient
Q22162286
SYSTEM
sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595
Q22162286
(Q21102933,P688,c(Q181394))
action filter_type
action find
entity Q22226441
relation P688
type Q181394
The sensory histidine kinase in two-component regulatory system with citB ECIAI39 0595 is encoded by that nucleic acid sequence
['Q21102933', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?y WHERE { ?y rdf:type ontology:Q181394 . resource:Q22226441 property:P688 ?y }
sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595
The sensory histidine kinase in two-component regulatory system with citB ECIAI39 0595 is encoded by that nucleic acid sequence
sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595
action filter_type
action find
entity sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595
relation encodes
type nutrient
['Escherichia coli IAI39', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?y WHERE { ?y rdf:type ontology:nutrient . resource:sensory_histidine_kinase_in_two-component_regulatory_system_with_citB____ECIAI39_0595 property:encodes ?y }
[]
Verification (Boolean) (All)
Verification|3 entities, 2 direct, 2(direct) are query entities, subject is indirect
Q22162286 Q3824358 Q21172343
P681
Q5058355
USER
Does that nutrient have intracellular and inner dense plaque of desmosome as cell component ?
(Q22162286,P681,Q3824358) (Q22162286,P681,Q21172343)
action is_in
entity Q22162286
action intersection
action find_reverse
entity Q3824358
relation P681
action find_reverse
entity Q21172343
relation P681
['Q22162286', 'P681', 'Q3824358'] ['Q22162286', 'P681', 'Q21172343']
ASK WHERE { resource:Q22162286 property:P681 resource:Q3824358 . resource:Q22162286 property:P681 resource:Q21172343 }
sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595 intracellular inner dense plaque of desmosome
action is_in
entity sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595
action intersection
action find_reverse
entity intracellular
relation cell component
action find_reverse
entity inner dense plaque of desmosome
relation cell component
['sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595', 'cell component', 'intracellular'] ['sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595', 'cell component', 'inner dense plaque of desmosome']
ASK WHERE { resource:sensory_histidine_kinase_in_two-component_regulatory_system_with_citB____ECIAI39_0595 property:cell_component resource:intracellular . resource:sensory_histidine_kinase_in_two-component_regulatory_system_with_citB____ECIAI39_0595 property:cell_component resource:inner_dense_plaque_of_desmosome }
[]
cellular component
SYSTEM
YES and NO respectively
(Q22162286,P681,Q3824358) (Q22162286,P681,Q21172343)
action is_in
entity Q22162286
action intersection
action find_reverse
entity Q3824358
relation P681
action find_reverse
entity Q21172343
relation P681
[ANSWER]
['Q22162286', 'P681', 'Q3824358'] ['Q22162286', 'P681', 'Q21172343']
ASK WHERE { resource:Q22162286 property:P681 resource:Q3824358 . resource:Q22162286 property:P681 resource:Q21172343 }
YES and NO respectively
action is_in
entity sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595
action intersection
action find_reverse
entity intracellular
relation cell component
action find_reverse
entity inner dense plaque of desmosome
relation cell component
['sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595', 'cell component', 'intracellular'] ['sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595', 'cell component', 'inner dense plaque of desmosome']
ASK WHERE { resource:sensory_histidine_kinase_in_two-component_regulatory_system_with_citB____ECIAI39_0595 property:cell_component resource:intracellular . resource:sensory_histidine_kinase_in_two-component_regulatory_system_with_citB____ECIAI39_0595 property:cell_component resource:inner_dense_plaque_of_desmosome }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23162036 Q22226441
P702
Q181394
USER
Which nutrients do sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595 or flavodoxin FldA    VP0835 encode ?
OR((c(Q181394),P702,Q22226441), (c(Q181394),P702,Q23162036))
action filter_type
action union
action find_reverse
entity Q22226441
relation P702
action find_reverse
entity Q23162036
relation P702
type Q181394
{'OR': [[{'concept': 'Q181394'}, 'P702', 'Q22226441'], [{'concept': 'Q181394'}, 'P702', 'Q23162036']]}
SELECT DISTINCT ?w WHERE { { VALUES ( ?z ) { ( resource:Q23162036 ) ( resource:Q22226441 ) } . ?w property:P702 ?z } . ?w rdf:type ontology:Q181394 }
flavodoxin FldA    VP0835 sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595
action filter_type
action union
action find_reverse
entity sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595
relation encoded by
action find_reverse
entity flavodoxin FldA    VP0835
relation encoded by
type nutrient
{'OR': [[{'concept': 'nutrient'}, 'encoded by', 'sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595'], [{'concept': 'nutrient'}, 'encoded by', 'flavodoxin FldA    VP0835']]}
SELECT DISTINCT ?w WHERE { { VALUES ( ?z ) { ( resource:flavodoxin_FldA____VP0835 ) ( resource:sensory_histidine_kinase_in_two-component_regulatory_system_with_citB____ECIAI39_0595 ) } . ?w property:encoded_by ?z } . ?w rdf:type ontology:nutrient }
[]
nutrient
Q22162286 Q23442611
SYSTEM
sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595, flavodoxin FldA    VP0835
Q22162286 Q23442611
OR((c(Q181394),P702,Q22226441), (c(Q181394),P702,Q23162036))
action filter_type
action union
action find_reverse
entity Q22226441
relation P702
action find_reverse
entity Q23162036
relation P702
type Q181394
[ANSWERS]
{'OR': [[{'concept': 'Q181394'}, 'P702', 'Q22226441'], [{'concept': 'Q181394'}, 'P702', 'Q23162036']]}
SELECT DISTINCT ?w WHERE { { VALUES ( ?z ) { ( resource:Q23162036 ) ( resource:Q22226441 ) } . ?w property:P702 ?z } . ?w rdf:type ontology:Q181394 }
sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595 flavodoxin FldA    VP0835
Sensory histidine kinase in two-component regulatory system with citB ECIAI39 0595 and flavodoxin FldA VP0835 sensory histidine kinase in two-component regulatory system with citB ECIAI39_0595 or flavoxin FldA VP0835 encode
sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595 flavodoxin FldA    VP0835
action filter_type
action union
action find_reverse
entity sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595
relation encoded by
action find_reverse
entity flavodoxin FldA    VP0835
relation encoded by
type nutrient
{'OR': [[{'concept': 'nutrient'}, 'encoded by', 'sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595'], [{'concept': 'nutrient'}, 'encoded by', 'flavodoxin FldA    VP0835']]}
SELECT DISTINCT ?w WHERE { { VALUES ( ?z ) { ( resource:flavodoxin_FldA____VP0835 ) ( resource:sensory_histidine_kinase_in_two-component_regulatory_system_with_citB____ECIAI39_0595 ) } . ?w property:encoded_by ?z } . ?w rdf:type ontology:nutrient }
[]
Simple Question (Coreferenced)
Simple Question|Mult. Entity
Q22162286 Q23442611
P688
Q863908
USER
Which nucleic acid sequences encode those nutrients ?
(c(Q863908),P688,Q22162286) (c(Q863908),P688,Q23442611)
action filter_type
action find_reverse
entity prev_answer
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q22162286'] [{'concept': 'Q863908'}, 'P688', 'Q23442611']
SELECT DISTINCT ?d WHERE { ?d property:P688 ?u . ?d rdf:type ontology:Q863908 . VALUES ( ?u ) { ( resource:Q22162286 ) ( resource:Q23442611 ) } }
sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595 flavodoxin FldA    VP0835
action filter_type
action find_reverse
entity prev_answer
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'flavodoxin FldA    VP0835']
SELECT DISTINCT ?d WHERE { ?d property:encodes ?u . ?d rdf:type ontology:nucleic_acid_sequence . VALUES ( ?u ) { ( resource:sensory_histidine_kinase_in_two-component_regulatory_system_with_citB____ECIAI39_0595 ) ( resource:flavodoxin_FldA____VP0835 ) } }
[]
nucleic acid sequence
Q22226441 Q23162036
SYSTEM
sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595, flavodoxin FldA    VP0835
Q22226441 Q23162036
(c(Q863908),P688,Q22162286) (c(Q863908),P688,Q23442611)
action filter_type
action find_reverse
entity prev_answer
relation P688
type Q863908
[ANSWERS]
[{'concept': 'Q863908'}, 'P688', 'Q22162286'] [{'concept': 'Q863908'}, 'P688', 'Q23442611']
SELECT DISTINCT ?d WHERE { ?d property:P688 ?u . ?d rdf:type ontology:Q863908 . VALUES ( ?u ) { ( resource:Q22162286 ) ( resource:Q23442611 ) } }
sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595 flavodoxin FldA    VP0835
Sensory histidine kinase in two-component regulatory system with citB ECIAI39 0595 and flavodoxin FldA VP0835 encode those nutrients
sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595 flavodoxin FldA    VP0835
action filter_type
action find_reverse
entity prev_answer
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'flavodoxin FldA    VP0835']
SELECT DISTINCT ?d WHERE { ?d property:encodes ?u . ?d rdf:type ontology:nucleic_acid_sequence . VALUES ( ?u ) { ( resource:sensory_histidine_kinase_in_two-component_regulatory_system_with_citB____ECIAI39_0595 ) ( resource:flavodoxin_FldA____VP0835 ) } }
[]
Simple Question (Direct)
Simple Question|Mult. Entity|Indirect
Q22226441 Q23162036
P702
Q181394
USER
Which nutrients do sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595 and flavodoxin FldA    VP0835 encode ?
(c(Q181394),P702,Q22226441) (c(Q181394),P702,Q23162036)
action union
action filter_type
action find_reverse
entity Q22226441
relation P702
type Q181394
action filter_type
action find_reverse
entity Q23162036
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q22226441'] [{'concept': 'Q181394'}, 'P702', 'Q23162036']
SELECT DISTINCT ?o WHERE { { ?o property:P702 resource:Q22226441 . ?o rdf:type ontology:Q181394 } UNION { ?o rdf:type ontology:Q181394 . ?o property:P702 resource:Q23162036 } }
sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595 flavodoxin FldA    VP0835
action union
action filter_type
action find_reverse
entity sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595
relation encoded by
type nutrient
action filter_type
action find_reverse
entity flavodoxin FldA    VP0835
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595'] [{'concept': 'nutrient'}, 'encoded by', 'flavodoxin FldA    VP0835']
SELECT DISTINCT ?o WHERE { { ?o property:encoded_by resource:sensory_histidine_kinase_in_two-component_regulatory_system_with_citB____ECIAI39_0595 . ?o rdf:type ontology:nutrient } UNION { ?o rdf:type ontology:nutrient . ?o property:encoded_by resource:flavodoxin_FldA____VP0835 } }
[]
nutrient
Q22162286 Q23442611
SYSTEM
sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595, flavodoxin FldA    VP0835
Q22162286 Q23442611
(c(Q181394),P702,Q22226441) (c(Q181394),P702,Q23162036)
action union
action filter_type
action find_reverse
entity Q22226441
relation P702
type Q181394
action filter_type
action find_reverse
entity Q23162036
relation P702
type Q181394
[ANSWERS]
[{'concept': 'Q181394'}, 'P702', 'Q22226441'] [{'concept': 'Q181394'}, 'P702', 'Q23162036']
SELECT DISTINCT ?o WHERE { { ?o property:P702 resource:Q22226441 . ?o rdf:type ontology:Q181394 } UNION { ?o rdf:type ontology:Q181394 . ?o property:P702 resource:Q23162036 } }
sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595 flavodoxin FldA    VP0835
Sensory histidine kinase in two-component regulatory system with citB ECIAI39 0595 and flavodoxin FldA VP0835 sensory histidine kinase in two-component regulatory system with citB ECIAI39_0595 and flavoxin FldA VP0835 encode
sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595 flavodoxin FldA    VP0835
action union
action filter_type
action find_reverse
entity sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595
relation encoded by
type nutrient
action filter_type
action find_reverse
entity flavodoxin FldA    VP0835
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'sensory histidine kinase in two-component regulatory system with citB    ECIAI39_0595'] [{'concept': 'nutrient'}, 'encoded by', 'flavodoxin FldA    VP0835']
SELECT DISTINCT ?o WHERE { { ?o property:encoded_by resource:sensory_histidine_kinase_in_two-component_regulatory_system_with_citB____ECIAI39_0595 . ?o rdf:type ontology:nutrient } UNION { ?o rdf:type ontology:nutrient . ?o property:encoded_by resource:flavodoxin_FldA____VP0835 } }
[]