Simple Question (Direct)
Simple Question
Q21121731
P703
Q16521
USER
Where is Nuclear protein localization protein 4 homolog found ?
(Q21121731,P703,c(Q16521))
action filter_type
action find
entity Q21121731
relation P703
type Q16521
['Q21121731', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?r WHERE { ?r rdf:type ontology:Q16521 . resource:Q21121731 property:P703 ?r }
Nuclear protein localization protein 4 homolog
action filter_type
action find
entity Nuclear protein localization protein 4 homolog
relation found in taxon
type taxon
['Nuclear protein localization protein 4 homolog', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?r WHERE { ?r rdf:type ontology:taxon . resource:Nuclear_protein_localization_protein_4_homolog property:found_in_taxon ?r }
[]
taxon
Q15978631
SYSTEM
Homo sapiens
Q15978631
(Q21121731,P703,c(Q16521))
action filter_type
action find
entity Q21121731
relation P703
type Q16521
Nuclear protein localization protein 4 homolog is found in [ANSWER]
['Q21121731', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?r WHERE { ?r rdf:type ontology:Q16521 . resource:Q21121731 property:P703 ?r }
Homo sapiens
Nuclear protein localization protein 4 homolog is found in Homo sapiens
Homo sapiens
action filter_type
action find
entity Nuclear protein localization protein 4 homolog
relation found in taxon
type taxon
['Nuclear protein localization protein 4 homolog', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?r WHERE { ?r rdf:type ontology:taxon . resource:Nuclear_protein_localization_protein_4_homolog property:found_in_taxon ?r }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21121731
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(c(Q863908),P688,Q15978631)
action filter_type
action find_reverse
entity Q21121731
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q15978631']
SELECT DISTINCT ?i WHERE { ?i rdf:type ontology:Q863908 . ?i property:P688 resource:Q21121731 }
Nuclear protein localization protein 4 homolog
action filter_type
action find_reverse
entity Nuclear protein localization protein 4 homolog
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Homo sapiens']
SELECT DISTINCT ?i WHERE { ?i rdf:type ontology:nucleic_acid_sequence . ?i property:encodes resource:Nuclear_protein_localization_protein_4_homolog }
[]
nucleic acid sequence
Q18041947
SYSTEM
NPLOC4
Q18041947
(c(Q863908),P688,Q15978631)
action filter_type
action find_reverse
entity Q21121731
relation P688
type Q863908
[ANSWER] encodes that nutrient
[{'concept': 'Q863908'}, 'P688', 'Q15978631']
SELECT DISTINCT ?i WHERE { ?i rdf:type ontology:Q863908 . ?i property:P688 resource:Q21121731 }
NPLOC4
NPLOC4 encodes that nutrient
NPLOC4
action filter_type
action find_reverse
entity Nuclear protein localization protein 4 homolog
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Homo sapiens']
SELECT DISTINCT ?i WHERE { ?i rdf:type ontology:nucleic_acid_sequence . ?i property:encodes resource:Nuclear_protein_localization_protein_4_homolog }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation|Incomplete
Q23472437 Q21121731
P688
Q863908
USER
Or hydrogenase maturation protease    Caur_2768?
OR((c(Q863908),P688,Q21121731), (c(Q863908),P688,Q23472437))
action filter_type
action union
action find_reverse
entity Q21121731
relation P688
action find_reverse
entity Q23472437
relation P688
type Q863908
{'OR': [[{'concept': 'Q863908'}, 'P688', 'Q21121731'], [{'concept': 'Q863908'}, 'P688', 'Q23472437']]}
SELECT DISTINCT ?f WHERE { { ?f property:P688 ?h . VALUES ( ?h ) { ( resource:Q21121731 ) ( resource:Q23472437 ) } } . ?f rdf:type ontology:Q863908 }
hydrogenase maturation protease    Caur_2768 Nuclear protein localization protein 4 homolog
action filter_type
action union
action find_reverse
entity Nuclear protein localization protein 4 homolog
relation encodes
action find_reverse
entity hydrogenase maturation protease    Caur_2768
relation encodes
type nucleic acid sequence
{'OR': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'Nuclear protein localization protein 4 homolog'], [{'concept': 'nucleic acid sequence'}, 'encodes', 'hydrogenase maturation protease    Caur_2768']]}
SELECT DISTINCT ?f WHERE { { ?f property:encodes ?h . VALUES ( ?h ) { ( resource:Nuclear_protein_localization_protein_4_homolog ) ( resource:hydrogenase_maturation_protease____Caur_2768 ) } } . ?f rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18041947 Q23392276
SYSTEM
NPLOC4, hydrogenase maturation protease    Caur_2768
Q18041947 Q23392276
OR((c(Q863908),P688,Q21121731), (c(Q863908),P688,Q23472437))
action filter_type
action union
action find_reverse
entity Q21121731
relation P688
action find_reverse
entity Q23472437
relation P688
type Q863908
[ANSWERS]
{'OR': [[{'concept': 'Q863908'}, 'P688', 'Q21121731'], [{'concept': 'Q863908'}, 'P688', 'Q23472437']]}
SELECT DISTINCT ?f WHERE { { ?f property:P688 ?h . VALUES ( ?h ) { ( resource:Q21121731 ) ( resource:Q23472437 ) } } . ?f rdf:type ontology:Q863908 }
NPLOC4 hydrogenase maturation protease    Caur_2768
NPLOC4 hydrogenase maturation protease    Caur_2768
action filter_type
action union
action find_reverse
entity Nuclear protein localization protein 4 homolog
relation encodes
action find_reverse
entity hydrogenase maturation protease    Caur_2768
relation encodes
type nucleic acid sequence
{'OR': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'Nuclear protein localization protein 4 homolog'], [{'concept': 'nucleic acid sequence'}, 'encodes', 'hydrogenase maturation protease    Caur_2768']]}
SELECT DISTINCT ?f WHERE { { ?f property:encodes ?h . VALUES ( ?h ) { ( resource:Nuclear_protein_localization_protein_4_homolog ) ( resource:hydrogenase_maturation_protease____Caur_2768 ) } } . ?f rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Mult. Entity
Q18041947 Q23392276
P688
Q181394
USER
What do those nucleic acid sequences encode ?
(Q18041947,P688,c(Q181394)) (Q23392276,P688,c(Q181394))
action filter_type
action find
entity prev_answer
relation P688
type Q181394
['Q18041947', 'P688', {'concept': 'Q181394'}] ['Q23392276', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?e WHERE { ?e rdf:type ontology:Q181394 . VALUES ( ?z ) { ( resource:Q18041947 ) ( resource:Q23392276 ) } . ?z property:P688 ?e }
NPLOC4 hydrogenase maturation protease    Caur_2768
action filter_type
action find
entity prev_answer
relation encodes
type nutrient
['NPLOC4', 'encodes', {'concept': 'nutrient'}] ['hydrogenase maturation protease    Caur_2768', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?e WHERE { ?e rdf:type ontology:nutrient . VALUES ( ?z ) { ( resource:NPLOC4 ) ( resource:hydrogenase_maturation_protease____Caur_2768 ) } . ?z property:encodes ?e }
[]
nutrient
Q21121731 Q21141151 Q21139974
SYSTEM
Nuclear protein localization protein 4 homolog, Nuclear protein localization 4 homolog (S. cerevisiae), isoform CRA_a, Nuclear protein localization protein 4 homolog
Q21139974 Q21141151 Q21121731 Q23472437
(Q18041947,P688,c(Q181394)) (Q23392276,P688,c(Q181394))
action filter_type
action find
entity prev_answer
relation P688
type Q181394
[ANSWERS]
['Q18041947', 'P688', {'concept': 'Q181394'}] ['Q23392276', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?e WHERE { ?e rdf:type ontology:Q181394 . VALUES ( ?z ) { ( resource:Q18041947 ) ( resource:Q23392276 ) } . ?z property:P688 ?e }
Nuclear protein localization protein 4 homolog Nuclear protein localization 4 homolog (S. cerevisiae), isoform CRA_a Nuclear protein localization protein 4 homolog hydrogenase maturation protease    Caur_2768
Those nucleic acid sequences encode the Nuclear protein localization protein 4 homolog, Nuclear protein localization 4 homolog (S. cerevisiae), isoform CRA a and Nuclear protein localization protein 4 homolog
Nuclear protein localization protein 4 homolog Nuclear protein localization 4 homolog (S. cerevisiae), isoform CRA_a Nuclear protein localization protein 4 homolog
action filter_type
action find
entity prev_answer
relation encodes
type nutrient
['NPLOC4', 'encodes', {'concept': 'nutrient'}] ['hydrogenase maturation protease    Caur_2768', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?e WHERE { ?e rdf:type ontology:nutrient . VALUES ( ?z ) { ( resource:NPLOC4 ) ( resource:hydrogenase_maturation_protease____Caur_2768 ) } . ?z property:encodes ?e }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21121731
P702
Q863908
USER
Which nucleic acid sequence encodes Nuclear protein localization protein 4 homolog ?
(Q21121731,P702,c(Q863908))
action filter_type
action find
entity Q21121731
relation P702
type Q863908
['Q21121731', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?t WHERE { resource:Q21121731 property:P702 ?t . ?t rdf:type ontology:Q863908 }
Nuclear protein localization protein 4 homolog
action filter_type
action find
entity Nuclear protein localization protein 4 homolog
relation encoded by
type nucleic acid sequence
['Nuclear protein localization protein 4 homolog', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?t WHERE { resource:Nuclear_protein_localization_protein_4_homolog property:encoded_by ?t . ?t rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18041947
SYSTEM
NPLOC4
Q18041947
(Q21121731,P702,c(Q863908))
action filter_type
action find
entity Q21121731
relation P702
type Q863908
En [ANSWER] encodes Nuclear protein localization protein 4 homolog
['Q21121731', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?t WHERE { resource:Q21121731 property:P702 ?t . ?t rdf:type ontology:Q863908 }
NPLOC4
En NPLOC4 encodes Nuclear protein localization protein 4 homolog
NPLOC4
action filter_type
action find
entity Nuclear protein localization protein 4 homolog
relation encoded by
type nucleic acid sequence
['Nuclear protein localization protein 4 homolog', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?t WHERE { resource:Nuclear_protein_localization_protein_4_homolog property:encoded_by ?t . ?t rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18041947
P684
Q863908
USER
Which nucleic acid sequence is an orthologous gene for that one ?
(Q18041947,P684,c(Q863908))
action filter_type
action find
entity Q18041947
relation P684
type Q863908
['Q18041947', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?j WHERE { resource:Q18041947 property:P684 ?j . ?j rdf:type ontology:Q863908 }
NPLOC4
action filter_type
action find
entity NPLOC4
relation ortholog
type nucleic acid sequence
['NPLOC4', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?j WHERE { resource:NPLOC4 property:ortholog ?j . ?j rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18296873
SYSTEM
Nploc4
Q18296873
(Q18041947,P684,c(Q863908))
action filter_type
action find
entity Q18041947
relation P684
type Q863908
[ANSWER] is an orthologous gene for that one
['Q18041947', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?j WHERE { resource:Q18041947 property:P684 ?j . ?j rdf:type ontology:Q863908 }
Nploc4
Nploc4 is an orthologous gene for that one
Nploc4
action filter_type
action find
entity NPLOC4
relation ortholog
type nucleic acid sequence
['NPLOC4', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?j WHERE { resource:NPLOC4 property:ortholog ?j . ?j rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q18299099
Q863908
USER
And also tell me about Cpz?
(Q18299099,P684,c(Q863908))
action filter_type
action find
entity Q18299099
relation P684
type Q863908
['Q18299099', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?e WHERE { ?e rdf:type ontology:Q863908 . resource:Q18299099 property:P684 ?e }
Cpz
action filter_type
action find
entity Cpz
relation ortholog
type nucleic acid sequence
['Cpz', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?e WHERE { ?e rdf:type ontology:nucleic_acid_sequence . resource:Cpz property:ortholog ?e }
[]
nucleic acid sequence
Q18033077
SYSTEM
CPZ
Q18033077
(Q18299099,P684,c(Q863908))
action filter_type
action find
entity Q18299099
relation P684
type Q863908
[ANSWER]
['Q18299099', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?e WHERE { ?e rdf:type ontology:Q863908 . resource:Q18299099 property:P684 ?e }
CPZ
CPZ
action filter_type
action find
entity Cpz
relation ortholog
type nucleic acid sequence
['Cpz', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?e WHERE { ?e rdf:type ontology:nucleic_acid_sequence . resource:Cpz property:ortholog ?e }
[]
Logical Reasoning (All)
Logical|Intersection|Multiple_Relation
Q15978631 Q18033077
P703 P702
Q181394
USER
Which nutrients are the gene that are encoded by CPZ and are found in the taxon Homo sapiens ?
AND((c(Q181394),P702,Q18033077), (c(Q181394),P703,Q15978631))
action filter_type
action intersection
action find_reverse
entity Q18033077
relation P702
action find_reverse
entity Q15978631
relation P703
type Q181394
{'AND': [[{'concept': 'Q181394'}, 'P702', 'Q18033077'], [{'concept': 'Q181394'}, 'P703', 'Q15978631']]}
SELECT DISTINCT ?z WHERE { ?z property:P703 resource:Q15978631 . ?z property:P702 resource:Q18033077 . ?z rdf:type ontology:Q181394 }
Homo sapiens CPZ
action filter_type
action intersection
action find_reverse
entity CPZ
relation encoded by
action find_reverse
entity Homo sapiens
relation found in taxon
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'encoded by', 'CPZ'], [{'concept': 'nutrient'}, 'found in taxon', 'Homo sapiens']]}
SELECT DISTINCT ?z WHERE { ?z property:found_in_taxon resource:Homo_sapiens . ?z property:encoded_by resource:CPZ . ?z rdf:type ontology:nutrient }
[]
nutrient
Q21130045
SYSTEM
Carboxypeptidase Z
Q21130045
AND((c(Q181394),P702,Q18033077), (c(Q181394),P703,Q15978631))
action filter_type
action intersection
action find_reverse
entity Q18033077
relation P702
action find_reverse
entity Q15978631
relation P703
type Q181394
The [ANSWER] is the gene that is encoded by CPZ and is found in the taxon Homo sapiens
{'AND': [[{'concept': 'Q181394'}, 'P702', 'Q18033077'], [{'concept': 'Q181394'}, 'P703', 'Q15978631']]}
SELECT DISTINCT ?z WHERE { ?z property:P703 resource:Q15978631 . ?z property:P702 resource:Q18033077 . ?z rdf:type ontology:Q181394 }
Carboxypeptidase Z
The Carboxypeptidase Z is the gene that is encoded by CPZ and is found in the taxon Homo sapiens
Carboxypeptidase Z
action filter_type
action intersection
action find_reverse
entity CPZ
relation encoded by
action find_reverse
entity Homo sapiens
relation found in taxon
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'encoded by', 'CPZ'], [{'concept': 'nutrient'}, 'found in taxon', 'Homo sapiens']]}
SELECT DISTINCT ?z WHERE { ?z property:found_in_taxon resource:Homo_sapiens . ?z property:encoded_by resource:CPZ . ?z rdf:type ontology:nutrient }
[]
Verification (Boolean) (All)
Verification|3 entities, 2 direct, 2(direct) are query entities, subject is indirect
Q21130045 Q14873986 Q14860850
P680
Q44424
USER
Does that nutrient have manganese ion binding and magnesium ion binding as its molecular function ?
(Q21130045,P680,Q14873986) (Q21130045,P680,Q14860850)
action is_in
entity Q21130045
action intersection
action find_reverse
entity Q14873986
relation P680
action find_reverse
entity Q14860850
relation P680
['Q21130045', 'P680', 'Q14873986'] ['Q21130045', 'P680', 'Q14860850']
ASK WHERE { resource:Q21130045 property:P680 resource:Q14873986 . resource:Q21130045 property:P680 resource:Q14860850 }
Carboxypeptidase Z manganese ion binding magnesium ion binding
action is_in
entity Carboxypeptidase Z
action intersection
action find_reverse
entity manganese ion binding
relation molecular function
action find_reverse
entity magnesium ion binding
relation molecular function
['Carboxypeptidase Z', 'molecular function', 'manganese ion binding'] ['Carboxypeptidase Z', 'molecular function', 'magnesium ion binding']
ASK WHERE { resource:Carboxypeptidase_Z property:molecular_function resource:manganese_ion_binding . resource:Carboxypeptidase_Z property:molecular_function resource:magnesium_ion_binding }
[]
chemical bond
SYSTEM
NO
(Q21130045,P680,Q14873986) (Q21130045,P680,Q14860850)
action is_in
entity Q21130045
action intersection
action find_reverse
entity Q14873986
relation P680
action find_reverse
entity Q14860850
relation P680
[ANSWER]
['Q21130045', 'P680', 'Q14873986'] ['Q21130045', 'P680', 'Q14860850']
ASK WHERE { resource:Q21130045 property:P680 resource:Q14873986 . resource:Q21130045 property:P680 resource:Q14860850 }
No
action is_in
entity Carboxypeptidase Z
action intersection
action find_reverse
entity manganese ion binding
relation molecular function
action find_reverse
entity magnesium ion binding
relation molecular function
['Carboxypeptidase Z', 'molecular function', 'manganese ion binding'] ['Carboxypeptidase Z', 'molecular function', 'magnesium ion binding']
ASK WHERE { resource:Carboxypeptidase_Z property:molecular_function resource:manganese_ion_binding . resource:Carboxypeptidase_Z property:molecular_function resource:magnesium_ion_binding }
[]