Simple Question (Direct)
Simple Question
Q21989960
P702
Q863908
USER
Which nucleic acid sequence encodes Polypyrimidine tract-binding protein 3 ?
(Q21989960,P702,c(Q863908))
action filter_type
action find
entity Q21989960
relation P702
type Q863908
['Q21989960', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?f WHERE { resource:Q21989960 property:P702 ?f . ?f rdf:type ontology:Q863908 }
Polypyrimidine tract-binding protein 3
action filter_type
action find
entity Polypyrimidine tract-binding protein 3
relation encoded by
type nucleic acid sequence
['Polypyrimidine tract-binding protein 3', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?f WHERE { resource:Polypyrimidine_tract-binding_protein_3 property:encoded_by ?f . ?f rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18297806
SYSTEM
Ptbp3
Q18297806
(Q21989960,P702,c(Q863908))
action filter_type
action find
entity Q21989960
relation P702
type Q863908
[ANSWER] encodes Polypyrimidine tract-binding protein 3
['Q21989960', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?f WHERE { resource:Q21989960 property:P702 ?f . ?f rdf:type ontology:Q863908 }
Ptbp3
Ptbp3 encodes Polypyrimidine tract-binding protein 3
Ptbp3
action filter_type
action find
entity Polypyrimidine tract-binding protein 3
relation encoded by
type nucleic acid sequence
['Polypyrimidine tract-binding protein 3', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?f WHERE { resource:Polypyrimidine_tract-binding_protein_3 property:encoded_by ?f . ?f rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18297806
P684
Q863908
USER
Which nucleic acid sequence is that one an orthlogous gene of ?
(c(Q863908),P684,Q18297806)
action filter_type
action find
entity Q18297806
relation P684
type Q863908
[{'concept': 'Q863908'}, 'P684', 'Q18297806']
SELECT DISTINCT ?u WHERE { resource:Q18297806 property:P684 ?u . ?u rdf:type ontology:Q863908 }
Ptbp3
action filter_type
action find
entity Ptbp3
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'Ptbp3']
SELECT DISTINCT ?u WHERE { resource:Ptbp3 property:ortholog ?u . ?u rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18034938
SYSTEM
PTBP3
Q18034938
(c(Q863908),P684,Q18297806)
action filter_type
action find
entity Q18297806
relation P684
type Q863908
[ANSWER] is that one an orthlogous gene of
[{'concept': 'Q863908'}, 'P684', 'Q18297806']
SELECT DISTINCT ?u WHERE { resource:Q18297806 property:P684 ?u . ?u rdf:type ontology:Q863908 }
PTBP3
PTBP3 is that one an orthlogous gene of
PTBP3
action filter_type
action find
entity Ptbp3
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'Ptbp3']
SELECT DISTINCT ?u WHERE { resource:Ptbp3 property:ortholog ?u . ?u rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q18034938 Q21135192
P702
Q181394
USER
Is Polypyrimidine tract-binding protein 3 encoded by that nucleic acid sequence ?
(Q21135192,P702,Q18034938)
action is_in
entity Q18034938
action find
entity Q21135192
relation P702
['Q21135192', 'P702', 'Q18034938']
ASK WHERE { resource:Q21135192 property:P702 resource:Q18034938 }
PTBP3 Polypyrimidine tract-binding protein 3
action is_in
entity PTBP3
action find
entity Polypyrimidine tract-binding protein 3
relation encoded by
['Polypyrimidine tract-binding protein 3', 'encoded by', 'PTBP3']
ASK WHERE { resource:Polypyrimidine_tract-binding_protein_3 property:encoded_by resource:PTBP3 }
[]
nutrient
SYSTEM
YES
(Q21135192,P702,Q18034938)
action is_in
entity Q18034938
action find
entity Q21135192
relation P702
[ANSWER]
['Q21135192', 'P702', 'Q18034938']
ASK WHERE { resource:Q21135192 property:P702 resource:Q18034938 }
Yes
action is_in
entity PTBP3
action find
entity Polypyrimidine tract-binding protein 3
relation encoded by
['Polypyrimidine tract-binding protein 3', 'encoded by', 'PTBP3']
ASK WHERE { resource:Polypyrimidine_tract-binding_protein_3 property:encoded_by resource:PTBP3 }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23491883
P688
Q863908
USER
Which nucleic acid sequence encodes hypothetical protein    SMU_1428c ?
(c(Q863908),P688,Q23491883)
action filter_type
action find_reverse
entity Q23491883
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q23491883']
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:Q863908 . ?u property:P688 resource:Q23491883 }
hypothetical protein    SMU_1428c
action filter_type
action find_reverse
entity hypothetical protein    SMU_1428c
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'hypothetical protein    SMU_1428c']
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:nucleic_acid_sequence . ?u property:encodes resource:hypothetical_protein____SMU_1428c }
[]
nucleic acid sequence
Q23219759
SYSTEM
hypothetical protein    SMU_1428c
Q23219759
(c(Q863908),P688,Q23491883)
action filter_type
action find_reverse
entity Q23491883
relation P688
type Q863908
Hypothetical protein SMU 1428c encodes hypothetical protein SMU_1428c
[{'concept': 'Q863908'}, 'P688', 'Q23491883']
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:Q863908 . ?u property:P688 resource:Q23491883 }
hypothetical protein    SMU_1428c
Hypothetical protein SMU 1428c encodes hypothetical protein SMU_1428c
hypothetical protein    SMU_1428c
action filter_type
action find_reverse
entity hypothetical protein    SMU_1428c
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'hypothetical protein    SMU_1428c']
SELECT DISTINCT ?u WHERE { ?u rdf:type ontology:nucleic_acid_sequence . ?u property:encodes resource:hypothetical_protein____SMU_1428c }
[]
Verification (Boolean) (All)
Verification|3 entities, 2 direct, 2(direct) are query entities, subject is indirect
Q23219759 Q23488526 Q27753374
P688
Q181394
USER
Does that nucleic acid sequence encodes ABC transporter ATP-binding protein    SSUBM407_1438 and membrane efflux protein    SCO7367 ?
(Q23219759,P688,Q23488526) (Q23219759,P688,Q27753374)
action is_in
entity Q23219759
action intersection
action find_reverse
entity Q23488526
relation P688
action find_reverse
entity Q27753374
relation P688
['Q23219759', 'P688', 'Q23488526'] ['Q23219759', 'P688', 'Q27753374']
ASK WHERE { resource:Q23219759 property:P688 resource:Q23488526 . resource:Q23219759 property:P688 resource:Q27753374 }
hypothetical protein    SMU_1428c ABC transporter ATP-binding protein    SSUBM407_1438 membrane efflux protein    SCO7367
action is_in
entity hypothetical protein    SMU_1428c
action intersection
action find_reverse
entity ABC transporter ATP-binding protein    SSUBM407_1438
relation encodes
action find_reverse
entity membrane efflux protein    SCO7367
relation encodes
['hypothetical protein    SMU_1428c', 'encodes', 'ABC transporter ATP-binding protein    SSUBM407_1438'] ['hypothetical protein    SMU_1428c', 'encodes', 'membrane efflux protein    SCO7367']
ASK WHERE { resource:hypothetical_protein____SMU_1428c property:encodes resource:ABC_transporter_ATP-binding_protein____SSUBM407_1438 . resource:hypothetical_protein____SMU_1428c property:encodes resource:membrane_efflux_protein____SCO7367 }
[]
nutrient
SYSTEM
NO
(Q23219759,P688,Q23488526) (Q23219759,P688,Q27753374)
action is_in
entity Q23219759
action intersection
action find_reverse
entity Q23488526
relation P688
action find_reverse
entity Q27753374
relation P688
[ANSWER]
['Q23219759', 'P688', 'Q23488526'] ['Q23219759', 'P688', 'Q27753374']
ASK WHERE { resource:Q23219759 property:P688 resource:Q23488526 . resource:Q23219759 property:P688 resource:Q27753374 }
No
action is_in
entity hypothetical protein    SMU_1428c
action intersection
action find_reverse
entity ABC transporter ATP-binding protein    SSUBM407_1438
relation encodes
action find_reverse
entity membrane efflux protein    SCO7367
relation encodes
['hypothetical protein    SMU_1428c', 'encodes', 'ABC transporter ATP-binding protein    SSUBM407_1438'] ['hypothetical protein    SMU_1428c', 'encodes', 'membrane efflux protein    SCO7367']
ASK WHERE { resource:hypothetical_protein____SMU_1428c property:encodes resource:ABC_transporter_ATP-binding_protein____SSUBM407_1438 . resource:hypothetical_protein____SMU_1428c property:encodes resource:membrane_efflux_protein____SCO7367 }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23219759
P703
Q631147
USER
Where is that nucleic acid sequence found ?
action filter_type
action find
entity Q23219759
relation P703
type Q631147
SELECT DISTINCT ?i WHERE { resource:Q23219759 property:P703 ?i . ?i rdf:type ontology:Q631147 }
hypothetical protein    SMU_1428c
action filter_type
action find
entity hypothetical protein    SMU_1428c
relation found in taxon
type infraspecific name
SELECT DISTINCT ?i WHERE { resource:hypothetical_protein____SMU_1428c property:found_in_taxon ?i . ?i rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102961
SYSTEM
Streptococcus mutans UA159
Q21102961
action filter_type
action find
entity Q23219759
relation P703
type Q631147
That nucleic acid sequence is found in [ANSWER]
SELECT DISTINCT ?i WHERE { resource:Q23219759 property:P703 ?i . ?i rdf:type ontology:Q631147 }
Streptococcus mutans UA159
That nucleic acid sequence is found in Streptococcus mutans UA159
Streptococcus mutans UA159
action filter_type
action find
entity hypothetical protein    SMU_1428c
relation found in taxon
type infraspecific name
SELECT DISTINCT ?i WHERE { resource:hypothetical_protein____SMU_1428c property:found_in_taxon ?i . ?i rdf:type ontology:infraspecific_name }
[]
Simple Question (Ellipsis)
Incomplete|object parent is changed, subject and predicate remain same
Q23219759
Q181394
USER
And which nutrient?
(Q23219759,P688,c(Q181394))
action filter_type
action find
entity Q23219759
relation P688
type Q181394
['Q23219759', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?t WHERE { ?t rdf:type ontology:Q181394 . resource:Q23219759 property:P688 ?t }
hypothetical protein    SMU_1428c
action filter_type
action find
entity hypothetical protein    SMU_1428c
relation encodes
type nutrient
['hypothetical protein    SMU_1428c', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?t WHERE { ?t rdf:type ontology:nutrient . resource:hypothetical_protein____SMU_1428c property:encodes ?t }
[]
nutrient
Q23491883
SYSTEM
hypothetical protein    SMU_1428c
Q23491883
(Q23219759,P688,c(Q181394))
action filter_type
action find
entity Q23219759
relation P688
type Q181394
[ANSWER]
['Q23219759', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?t WHERE { ?t rdf:type ontology:Q181394 . resource:Q23219759 property:P688 ?t }
hypothetical protein    SMU_1428c
hypothetical protein    SMU_1428c
action filter_type
action find
entity hypothetical protein    SMU_1428c
relation encodes
type nutrient
['hypothetical protein    SMU_1428c', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?t WHERE { ?t rdf:type ontology:nutrient . resource:hypothetical_protein____SMU_1428c property:encodes ?t }
[]
Quantitative Reasoning (All)
Quantitative|Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q181394 Q8386 Q181394
USER
Which nutrients can communicate with approximately 31 nutrients and drugs ?
(c(Q181394),P129,c(Q181394)|c(Q8386))
action approx
action union
action find_tuple_counts
relation P129
type Q181394
type Q181394
action find_tuple_counts
relation P129
type Q181394
type Q8386
value 31
[{'concept': 'Q181394'}, 'P129', [{'concept': 'Q181394'}, {'concept': 'Q8386'}]]
SELECT DISTINCT ?e WHERE { FILTER ( ?t = 31 ) . { SELECT DISTINCT ?e ( COUNT ( ?q ) AS ?t ) WHERE { { ?e property:P129 ?q . ?e rdf:type ontology:Q181394 . ?q rdf:type ontology:Q181394 } UNION { ?e property:P129 ?q . ?e rdf:type ontology:Q181394 . ?q rdf:type ontology:Q8386 } } GROUP BY ?e } }
action approx
action union
action find_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_tuple_counts
relation physically interacts with
type nutrient
type drug
value 31
[{'concept': 'nutrient'}, 'physically interacts with', [{'concept': 'nutrient'}, {'concept': 'drug'}]]
SELECT DISTINCT ?e WHERE { FILTER ( ?t = 31 ) . { SELECT DISTINCT ?e ( COUNT ( ?q ) AS ?t ) WHERE { { ?e property:physically_interacts_with ?q . ?e rdf:type ontology:nutrient . ?q rdf:type ontology:nutrient } UNION { ?e property:physically_interacts_with ?q . ?e rdf:type ontology:nutrient . ?q rdf:type ontology:drug } } GROUP BY ?e } }
[]
nutrient drug nutrient
Q21108118 Q21110872 Q21115046
SYSTEM
5-hydroxytryptamine receptor 2C, D(3) dopamine receptor, 5-hydroxytryptamine receptor 1D
Q7050954 Q287961 Q410142 Q21110872 Q21108118 Q21115046
(c(Q181394),P129,c(Q181394)|c(Q8386))
action approx
action union
action find_tuple_counts
relation P129
type Q181394
type Q181394
action find_tuple_counts
relation P129
type Q181394
type Q8386
value 31
Receptor [ANSWERS] can communicate with approximately 31 nutrients and drugs
[{'concept': 'Q181394'}, 'P129', [{'concept': 'Q181394'}, {'concept': 'Q8386'}]]
SELECT DISTINCT ?e WHERE { FILTER ( ?t = 31 ) . { SELECT DISTINCT ?e ( COUNT ( ?q ) AS ?t ) WHERE { { ?e property:P129 ?q . ?e rdf:type ontology:Q181394 . ?q rdf:type ontology:Q181394 } UNION { ?e property:P129 ?q . ?e rdf:type ontology:Q181394 . ?q rdf:type ontology:Q8386 } } GROUP BY ?e } }
Sodium-dependent noradrenaline transporter Beta-2 adrenergic receptor Sodium-dependent serotonin transporter D(3) dopamine receptor 5-hydroxytryptamine receptor 2C 5-hydroxytryptamine receptor 1D
Receptor 5-hydroxytryptamine receptor 2C, D(3) dopamine receptor and 5-hydroxytryptamine receptor 1D can communicate with approximately 31 nutrients and drugs
5-hydroxytryptamine receptor 2C D(3) dopamine receptor 5-hydroxytryptamine receptor 1D
action approx
action union
action find_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_tuple_counts
relation physically interacts with
type nutrient
type drug
value 31
[{'concept': 'nutrient'}, 'physically interacts with', [{'concept': 'nutrient'}, {'concept': 'drug'}]]
SELECT DISTINCT ?e WHERE { FILTER ( ?t = 31 ) . { SELECT DISTINCT ?e ( COUNT ( ?q ) AS ?t ) WHERE { { ?e property:physically_interacts_with ?q . ?e rdf:type ontology:nutrient . ?q rdf:type ontology:nutrient } UNION { ?e property:physically_interacts_with ?q . ?e rdf:type ontology:nutrient . ?q rdf:type ontology:drug } } GROUP BY ?e } }
[]
Clarification
Simple Question|Single Entity|Indirect
Q21110872
P682
Q9332
USER
What are the behaviors that that nutrient are involved in ?
(Q21110872,P682,c(Q9332))
action filter_type
action find
entity Q21110872
relation P682
type Q9332
['Q21110872', 'P682', {'concept': 'Q9332'}]
SELECT DISTINCT ?s WHERE { resource:Q21110872 property:P682 ?s . ?s rdf:type ontology:Q9332 }
D(3) dopamine receptor
action filter_type
action find
entity D(3) dopamine receptor
relation biological process
type behavior
['D(3) dopamine receptor', 'biological process', {'concept': 'behavior'}]
SELECT DISTINCT ?s WHERE { resource:D(3)_dopamine_receptor property:biological_process ?s . ?s rdf:type ontology:behavior }
[]
behavior
Clarification for simple ques.
Q21115046
SYSTEM
Did you mean 5-hydroxytryptamine receptor 1D ?
Q21108118 Q21110872 Q21115046
(Q21108118,P682,c(Q9332)) (Q21110872,P682,c(Q9332)) (Q21115046,P682,c(Q9332))
[ANSWER]
['Q21108118', 'P682', {'concept': 'Q9332'}] ['Q21110872', 'P682', {'concept': 'Q9332'}] ['Q21115046', 'P682', {'concept': 'Q9332'}]
SELECT DISTINCT ?s WHERE { resource:Q21110872 property:P682 ?s . ?s rdf:type ontology:Q9332 }
5-hydroxytryptamine receptor 2C D(3) dopamine receptor 5-hydroxytryptamine receptor 1D
Did you mean 5-hydroxytryptamine receptor 1D ?
5-hydroxytryptamine receptor 1D
['5-hydroxytryptamine receptor 2C', 'biological process', {'concept': 'behavior'}] ['D(3) dopamine receptor', 'biological process', {'concept': 'behavior'}] ['5-hydroxytryptamine receptor 1D', 'biological process', {'concept': 'behavior'}]
SELECT DISTINCT ?s WHERE { resource:D(3)_dopamine_receptor property:biological_process ?s . ?s rdf:type ontology:behavior }
[]
Simple Question (Coreferenced)
USER
No, I meant D(3) dopamine receptor. Could you tell me the answer for that?
(Q21110872,P682,c(Q9332))
Q21110872
['Q21110872', 'P682', {'concept': 'Q9332'}]
['D(3) dopamine receptor', 'biological process', {'concept': 'behavior'}]
[]
Q921513 Q14819853
SYSTEM
social behavior, learning or memory
Q921513 Q14819853
(Q21110872,P682,c(Q9332))
action filter_type
action find
entity Q21110872
relation P682
type Q9332
The behaviors that nutrient are involved in are [ANSWERS]
['Q21110872', 'P682', {'concept': 'Q9332'}]
SELECT DISTINCT ?s WHERE { resource:Q21110872 property:P682 ?s . ?s rdf:type ontology:Q9332 }
social behavior learning or memory
The behaviors that nutrient are involved in are social behavior and learning or memory
social behavior learning or memory
action filter_type
action find
entity D(3) dopamine receptor
relation biological process
type behavior
['D(3) dopamine receptor', 'biological process', {'concept': 'behavior'}]
SELECT DISTINCT ?s WHERE { resource:D(3)_dopamine_receptor property:biological_process ?s . ?s rdf:type ontology:behavior }
[]