Simple Question (Direct)
Simple Question
Q24096522
P682
Q1057
USER
Which metabolic process is periplasmic protein thiol:disulfide oxidoreductase DsbE    Psyr_3387 involved in ?
(Q24096522,P682,c(Q1057))
action filter_type
action find
entity Q24096522
relation P682
type Q1057
['Q24096522', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?i WHERE { resource:Q24096522 property:P682 ?i . ?i rdf:type ontology:Q1057 }
periplasmic protein thiol:disulfide oxidoreductase DsbE    Psyr_3387
action filter_type
action find
entity periplasmic protein thiol:disulfide oxidoreductase DsbE    Psyr_3387
relation biological process
type metabolic process
['periplasmic protein thiol:disulfide oxidoreductase DsbE    Psyr_3387', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?i WHERE { resource:periplasmic_protein_thiol:disulfide_oxidoreductase_DsbE____Psyr_3387 property:biological_process ?i . ?i rdf:type ontology:metabolic_process }
[]
metabolic process
Q14349764
SYSTEM
oxidation-reduction process
Q14349764
(Q24096522,P682,c(Q1057))
action filter_type
action find
entity Q24096522
relation P682
type Q1057
[ANSWER] is periplasmic protein thiol:disulfide oxidoreductase DsbE Psyr_3387 involved in
['Q24096522', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?i WHERE { resource:Q24096522 property:P682 ?i . ?i rdf:type ontology:Q1057 }
oxidation-reduction process
Oxidation-reduction process is periplasmic protein thiol:disulfide oxidoreductase DsbE Psyr_3387 involved in
oxidation-reduction process
action filter_type
action find
entity periplasmic protein thiol:disulfide oxidoreductase DsbE    Psyr_3387
relation biological process
type metabolic process
['periplasmic protein thiol:disulfide oxidoreductase DsbE    Psyr_3387', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?i WHERE { resource:periplasmic_protein_thiol:disulfide_oxidoreductase_DsbE____Psyr_3387 property:biological_process ?i . ?i rdf:type ontology:metabolic_process }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q24096522
P702
Q863908
USER
What is the gene that encodes that nutrient ?
(Q14349764,P702,c(Q863908))
action filter_type
action find
entity Q24096522
relation P702
type Q863908
['Q14349764', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?e WHERE { resource:Q24096522 property:P702 ?e . ?e rdf:type ontology:Q863908 }
periplasmic protein thiol:disulfide oxidoreductase DsbE    Psyr_3387
action filter_type
action find
entity periplasmic protein thiol:disulfide oxidoreductase DsbE    Psyr_3387
relation encoded by
type nucleic acid sequence
['oxidation-reduction process', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?e WHERE { resource:periplasmic_protein_thiol:disulfide_oxidoreductase_DsbE____Psyr_3387 property:encoded_by ?e . ?e rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23154462
SYSTEM
periplasmic protein thiol:disulfide oxidoreductase DsbE    Psyr_3387
Q23154462
(Q14349764,P702,c(Q863908))
action filter_type
action find
entity Q24096522
relation P702
type Q863908
The gene that encodes that nutrient is the periplasmic protein thiol:disulfide oxidoreductase DsbE Psyr 3387
['Q14349764', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?e WHERE { resource:Q24096522 property:P702 ?e . ?e rdf:type ontology:Q863908 }
periplasmic protein thiol:disulfide oxidoreductase DsbE    Psyr_3387
The gene that encodes that nutrient is the periplasmic protein thiol:disulfide oxidoreductase DsbE Psyr 3387
periplasmic protein thiol:disulfide oxidoreductase DsbE    Psyr_3387
action filter_type
action find
entity periplasmic protein thiol:disulfide oxidoreductase DsbE    Psyr_3387
relation encoded by
type nucleic acid sequence
['oxidation-reduction process', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?e WHERE { resource:periplasmic_protein_thiol:disulfide_oxidoreductase_DsbE____Psyr_3387 property:encoded_by ?e . ?e rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q23154462 Q22136215
P688
Q181394
USER
Is galactosamine-6-phosphate isomerase    ECIAI39_3642 encoded by periplasmic protein thiol:disulfide oxidoreductase DsbE    Psyr_3387 ?
(Q23154462,P688,Q22136215)
action is_in
entity Q22136215
action find
entity Q23154462
relation P688
['Q23154462', 'P688', 'Q22136215']
ASK WHERE { resource:Q23154462 property:P688 resource:Q22136215 }
periplasmic protein thiol:disulfide oxidoreductase DsbE    Psyr_3387 galactosamine-6-phosphate isomerase    ECIAI39_3642
action is_in
entity galactosamine-6-phosphate isomerase    ECIAI39_3642
action find
entity periplasmic protein thiol:disulfide oxidoreductase DsbE    Psyr_3387
relation encodes
['periplasmic protein thiol:disulfide oxidoreductase DsbE    Psyr_3387', 'encodes', 'galactosamine-6-phosphate isomerase    ECIAI39_3642']
ASK WHERE { resource:periplasmic_protein_thiol:disulfide_oxidoreductase_DsbE____Psyr_3387 property:encodes resource:galactosamine-6-phosphate_isomerase____ECIAI39_3642 }
[]
nutrient
SYSTEM
NO
(Q23154462,P688,Q22136215)
action is_in
entity Q22136215
action find
entity Q23154462
relation P688
[ANSWER]
['Q23154462', 'P688', 'Q22136215']
ASK WHERE { resource:Q23154462 property:P688 resource:Q22136215 }
No
action is_in
entity galactosamine-6-phosphate isomerase    ECIAI39_3642
action find
entity periplasmic protein thiol:disulfide oxidoreductase DsbE    Psyr_3387
relation encodes
['periplasmic protein thiol:disulfide oxidoreductase DsbE    Psyr_3387', 'encodes', 'galactosamine-6-phosphate isomerase    ECIAI39_3642']
ASK WHERE { resource:periplasmic_protein_thiol:disulfide_oxidoreductase_DsbE____Psyr_3387 property:encodes resource:galactosamine-6-phosphate_isomerase____ECIAI39_3642 }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q22229124 Q23154462
P688
Q181394
USER
Which nutrients do periplasmic protein thiol:disulfide oxidoreductase DsbE    Psyr_3387 or lipoprotein    Rv1922 encode ?
OR((Q23154462,P688,c(Q181394)), (Q22229124,P688,c(Q181394)))
action filter_type
action union
action find
entity Q23154462
relation P688
action find
entity Q22229124
relation P688
type Q181394
{'OR': [['Q23154462', 'P688', {'concept': 'Q181394'}], ['Q22229124', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?p WHERE { ?p rdf:type ontology:Q181394 . { { resource:Q23154462 property:P688 ?p } UNION { resource:Q22229124 property:P688 ?p } } }
lipoprotein    Rv1922 periplasmic protein thiol:disulfide oxidoreductase DsbE    Psyr_3387
action filter_type
action union
action find
entity periplasmic protein thiol:disulfide oxidoreductase DsbE    Psyr_3387
relation encodes
action find
entity lipoprotein    Rv1922
relation encodes
type nutrient
{'OR': [['periplasmic protein thiol:disulfide oxidoreductase DsbE    Psyr_3387', 'encodes', {'concept': 'nutrient'}], ['lipoprotein    Rv1922', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?p WHERE { ?p rdf:type ontology:nutrient . { { resource:periplasmic_protein_thiol:disulfide_oxidoreductase_DsbE____Psyr_3387 property:encodes ?p } UNION { resource:lipoprotein____Rv1922 property:encodes ?p } } }
[]
nutrient
Q24096522 Q22233696
SYSTEM
periplasmic protein thiol:disulfide oxidoreductase DsbE    Psyr_3387, lipoprotein    Rv1922
Q24096522 Q22233696
OR((Q23154462,P688,c(Q181394)), (Q22229124,P688,c(Q181394)))
action filter_type
action union
action find
entity Q23154462
relation P688
action find
entity Q22229124
relation P688
type Q181394
[ANSWERS]
{'OR': [['Q23154462', 'P688', {'concept': 'Q181394'}], ['Q22229124', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?p WHERE { ?p rdf:type ontology:Q181394 . { { resource:Q23154462 property:P688 ?p } UNION { resource:Q22229124 property:P688 ?p } } }
periplasmic protein thiol:disulfide oxidoreductase DsbE    Psyr_3387 lipoprotein    Rv1922
Periplasmic protein thiol:disulfide oxidoreductase DsbE Psyr 3387 and lipoprotein Rv1922 periplasmic protein thiol:disulfide oxireductase DsbE Psyr_3387 or lipoprotein Rv1922 encode
periplasmic protein thiol:disulfide oxidoreductase DsbE    Psyr_3387 lipoprotein    Rv1922
action filter_type
action union
action find
entity periplasmic protein thiol:disulfide oxidoreductase DsbE    Psyr_3387
relation encodes
action find
entity lipoprotein    Rv1922
relation encodes
type nutrient
{'OR': [['periplasmic protein thiol:disulfide oxidoreductase DsbE    Psyr_3387', 'encodes', {'concept': 'nutrient'}], ['lipoprotein    Rv1922', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?p WHERE { ?p rdf:type ontology:nutrient . { { resource:periplasmic_protein_thiol:disulfide_oxidoreductase_DsbE____Psyr_3387 property:encodes ?p } UNION { resource:lipoprotein____Rv1922 property:encodes ?p } } }
[]
Simple Question (Coreferenced)
Simple Question|Mult. Entity
Q24096522 Q22233696
P703
Q631147
USER
Which taxons are those nutrients a part of ?
(Q24096522,P703,c(Q631147)) (Q22233696,P703,c(Q631147))
action filter_type
action find
entity prev_answer
relation P703
type Q631147
['Q24096522', 'P703', {'concept': 'Q631147'}] ['Q22233696', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?n WHERE { ?n rdf:type ontology:Q631147 . VALUES ( ?m ) { ( resource:Q24096522 ) ( resource:Q22233696 ) } . ?m property:P703 ?n }
periplasmic protein thiol:disulfide oxidoreductase DsbE    Psyr_3387 lipoprotein    Rv1922
action filter_type
action find
entity prev_answer
relation found in taxon
type infraspecific name
['periplasmic protein thiol:disulfide oxidoreductase DsbE    Psyr_3387', 'found in taxon', {'concept': 'infraspecific name'}] ['lipoprotein    Rv1922', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?n WHERE { ?n rdf:type ontology:infraspecific_name . VALUES ( ?m ) { ( resource:periplasmic_protein_thiol:disulfide_oxidoreductase_DsbE____Psyr_3387 ) ( resource:lipoprotein____Rv1922 ) } . ?m property:found_in_taxon ?n }
[]
infraspecific name
Q21079490 Q21102987
SYSTEM
Pseudomonas syringae pv. syringae B728a, Mycobacterium tuberculosis H37Rv
Q21079490 Q21102987
(Q24096522,P703,c(Q631147)) (Q22233696,P703,c(Q631147))
action filter_type
action find
entity prev_answer
relation P703
type Q631147
[ANSWERS] are those nutrients a part of
['Q24096522', 'P703', {'concept': 'Q631147'}] ['Q22233696', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?n WHERE { ?n rdf:type ontology:Q631147 . VALUES ( ?m ) { ( resource:Q24096522 ) ( resource:Q22233696 ) } . ?m property:P703 ?n }
Pseudomonas syringae pv. syringae B728a Mycobacterium tuberculosis H37Rv
Pseudomonas syringae pv. syringae B728a and Mycobacterium tuberculosis H37Rv are those nutrients a part of
Pseudomonas syringae pv. syringae B728a Mycobacterium tuberculosis H37Rv
action filter_type
action find
entity prev_answer
relation found in taxon
type infraspecific name
['periplasmic protein thiol:disulfide oxidoreductase DsbE    Psyr_3387', 'found in taxon', {'concept': 'infraspecific name'}] ['lipoprotein    Rv1922', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?n WHERE { ?n rdf:type ontology:infraspecific_name . VALUES ( ?m ) { ( resource:periplasmic_protein_thiol:disulfide_oxidoreductase_DsbE____Psyr_3387 ) ( resource:lipoprotein____Rv1922 ) } . ?m property:found_in_taxon ?n }
[]