Simple Question (Direct)
Simple Question
Q21118828
P680
Q44424
USER
What represents the molecular function of Synaptotagmin-4 ?
(Q21118828,P680,c(Q44424))
action filter_type
action find
entity Q21118828
relation P680
type Q44424
['Q21118828', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?q WHERE { resource:Q21118828 property:P680 ?q . ?q rdf:type ontology:Q44424 }
Synaptotagmin-4
action filter_type
action find
entity Synaptotagmin-4
relation molecular function
type chemical bond
['Synaptotagmin-4', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?q WHERE { resource:Synaptotagmin-4 property:molecular_function ?q . ?q rdf:type ontology:chemical_bond }
[]
chemical bond
Q13667380 Q14633862
SYSTEM
metal ion binding, calcium ion binding
Q13667380 Q14633862
(Q21118828,P680,c(Q44424))
action filter_type
action find
entity Q21118828
relation P680
type Q44424
The [ANSWERS] represent the molecular function of Synaptotagmin-4
['Q21118828', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?q WHERE { resource:Q21118828 property:P680 ?q . ?q rdf:type ontology:Q44424 }
metal ion binding calcium ion binding
The metal ion binding and calcium ion binding represent the molecular function of Synaptotagmin-4
metal ion binding calcium ion binding
action filter_type
action find
entity Synaptotagmin-4
relation molecular function
type chemical bond
['Synaptotagmin-4', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?q WHERE { resource:Synaptotagmin-4 property:molecular_function ?q . ?q rdf:type ontology:chemical_bond }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21118828
P682
Q2996394
USER
Which biological process is Synaptotagmin-4 involved in ?
(Q21118828,P682,c(Q2996394))
action filter_type
action find
entity Q21118828
relation P682
type Q2996394
['Q21118828', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?v WHERE { ?v rdf:type ontology:Q2996394 . resource:Q21118828 property:P682 ?v }
Synaptotagmin-4
action filter_type
action find
entity Synaptotagmin-4
relation biological process
type biological process
['Synaptotagmin-4', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?v WHERE { ?v rdf:type ontology:biological_process . resource:Synaptotagmin-4 property:biological_process ?v }
[]
biological process
Q14863664
SYSTEM
neurotransmitter secretion
Q14863664
(Q21118828,P682,c(Q2996394))
action filter_type
action find
entity Q21118828
relation P682
type Q2996394
Which biological process is Synaptotagmin-4 involved in
['Q21118828', 'P682', {'concept': 'Q2996394'}]
SELECT DISTINCT ?v WHERE { ?v rdf:type ontology:Q2996394 . resource:Q21118828 property:P682 ?v }
neurotransmitter secretion
Which biological process is Synaptotagmin-4 involved in
neurotransmitter secretion
action filter_type
action find
entity Synaptotagmin-4
relation biological process
type biological process
['Synaptotagmin-4', 'biological process', {'concept': 'biological process'}]
SELECT DISTINCT ?v WHERE { ?v rdf:type ontology:biological_process . resource:Synaptotagmin-4 property:biological_process ?v }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21118828
P702
Q863908
USER
Which gene encodes that nutrient ?
(Q14863664,P702,c(Q863908))
action filter_type
action find
entity Q21118828
relation P702
type Q863908
['Q14863664', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:Q863908 . resource:Q21118828 property:P702 ?j }
Synaptotagmin-4
action filter_type
action find
entity Synaptotagmin-4
relation encoded by
type nucleic acid sequence
['neurotransmitter secretion', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:nucleic_acid_sequence . resource:Synaptotagmin-4 property:encoded_by ?j }
[]
nucleic acid sequence
Q18031810
SYSTEM
SYT4
Q18031810
(Q14863664,P702,c(Q863908))
action filter_type
action find
entity Q21118828
relation P702
type Q863908
[ANSWER] encodes that nutrient
['Q14863664', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:Q863908 . resource:Q21118828 property:P702 ?j }
SYT4
SYT4 encodes that nutrient
SYT4
action filter_type
action find
entity Synaptotagmin-4
relation encoded by
type nucleic acid sequence
['neurotransmitter secretion', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:nucleic_acid_sequence . resource:Synaptotagmin-4 property:encoded_by ?j }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q18031810 Q23511280
P702
Q181394
USER
Is glucose uptake protein    BC4716 encoded by that nucleic acid sequence ?
(Q23511280,P702,Q18031810)
action is_in
entity Q23511280
action find
entity Q18031810
relation P702
['Q23511280', 'P702', 'Q18031810']
ASK WHERE { resource:Q18031810 property:P702 resource:Q23511280 }
SYT4 glucose uptake protein    BC4716
action is_in
entity glucose uptake protein    BC4716
action find
entity SYT4
relation encoded by
['glucose uptake protein    BC4716', 'encoded by', 'SYT4']
ASK WHERE { resource:SYT4 property:encoded_by resource:glucose_uptake_protein____BC4716 }
[]
nutrient
SYSTEM
NO
(Q23511280,P702,Q18031810)
action is_in
entity Q23511280
action find
entity Q18031810
relation P702
[ANSWER]
['Q23511280', 'P702', 'Q18031810']
ASK WHERE { resource:Q18031810 property:P702 resource:Q23511280 }
No
action is_in
entity glucose uptake protein    BC4716
action find
entity SYT4
relation encoded by
['glucose uptake protein    BC4716', 'encoded by', 'SYT4']
ASK WHERE { resource:SYT4 property:encoded_by resource:glucose_uptake_protein____BC4716 }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type
Q18031810
P702
Q181394
USER
How many nutrients do SYT4 encode ?
(c(Q181394),P702,Q18031810)
action count
action filter_type
action find_reverse
entity Q18031810
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q18031810']
SELECT DISTINCT ( COUNT ( ?h ) AS ?a ) WHERE { ?h property:P702 resource:Q18031810 . ?h rdf:type ontology:Q181394 }
SYT4
action count
action filter_type
action find_reverse
entity SYT4
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'SYT4']
SELECT DISTINCT ( COUNT ( ?h ) AS ?a ) WHERE { ?h property:encoded_by resource:SYT4 . ?h rdf:type ontology:nutrient }
[]
nutrient
SYSTEM
2
Q21150656 Q21118828
(c(Q181394),P702,Q18031810)
action count
action filter_type
action find_reverse
entity Q18031810
relation P702
type Q181394
[ANSWER]
[{'concept': 'Q181394'}, 'P702', 'Q18031810']
SELECT DISTINCT ( COUNT ( ?h ) AS ?a ) WHERE { ?h property:P702 resource:Q18031810 . ?h rdf:type ontology:Q181394 }
Synaptotagmin-4 Synaptotagmin-4
2
action count
action filter_type
action find_reverse
entity SYT4
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'SYT4']
SELECT DISTINCT ( COUNT ( ?h ) AS ?a ) WHERE { ?h property:encoded_by resource:SYT4 . ?h rdf:type ontology:nutrient }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18031810
P684
Q863908
USER
What is an otrhologus gene for that one ?
action filter_type
action find
entity Q18031810
relation P684
type Q863908
SELECT DISTINCT ?l WHERE { resource:Q18031810 property:P684 ?l . ?l rdf:type ontology:Q863908 }
SYT4
action filter_type
action find
entity SYT4
relation ortholog
type nucleic acid sequence
SELECT DISTINCT ?l WHERE { resource:SYT4 property:ortholog ?l . ?l rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18254443
SYSTEM
Syt4
Q18254443
action filter_type
action find
entity Q18031810
relation P684
type Q863908
An otrhologus gene for that one is a [ANSWER]
SELECT DISTINCT ?l WHERE { resource:Q18031810 property:P684 ?l . ?l rdf:type ontology:Q863908 }
Syt4
An otrhologus gene for that one is a Syt4
Syt4
action filter_type
action find
entity SYT4
relation ortholog
type nucleic acid sequence
SELECT DISTINCT ?l WHERE { resource:SYT4 property:ortholog ?l . ?l rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q18254443 Q21989601
P688
Q181394
USER
Is Synaptotagmin-4 encoded by Syt4 ?
(Q18254443,P688,Q21989601)
action is_in
entity Q21989601
action find
entity Q18254443
relation P688
['Q18254443', 'P688', 'Q21989601']
ASK WHERE { resource:Q18254443 property:P688 resource:Q21989601 }
Syt4 Synaptotagmin-4
action is_in
entity Synaptotagmin-4
action find
entity Syt4
relation encodes
['Syt4', 'encodes', 'Synaptotagmin-4']
ASK WHERE { resource:Syt4 property:encodes resource:Synaptotagmin-4 }
[]
nutrient
SYSTEM
YES
(Q18254443,P688,Q21989601)
action is_in
entity Q21989601
action find
entity Q18254443
relation P688
[ANSWER]
['Q18254443', 'P688', 'Q21989601']
ASK WHERE { resource:Q18254443 property:P688 resource:Q21989601 }
Yes
action is_in
entity Synaptotagmin-4
action find
entity Syt4
relation encodes
['Syt4', 'encodes', 'Synaptotagmin-4']
ASK WHERE { resource:Syt4 property:encodes resource:Synaptotagmin-4 }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23599214 Q21118828
P681
Q5058355
USER
What are components of Synaptotagmin-4 or tungstate-responsive two component Sigma54-dependent signal transduction system response regulator Fis family    SO_4718 ?
OR((Q21118828,P681,c(Q5058355)), (Q23599214,P681,c(Q5058355)))
action filter_type
action union
action find
entity Q21118828
relation P681
action find
entity Q23599214
relation P681
type Q5058355
{'OR': [['Q21118828', 'P681', {'concept': 'Q5058355'}], ['Q23599214', 'P681', {'concept': 'Q5058355'}]]}
SELECT DISTINCT ?b WHERE { { { resource:Q21118828 property:P681 ?b } UNION { resource:Q23599214 property:P681 ?b } } . ?b rdf:type ontology:Q5058355 }
tungstate-responsive two component Sigma54-dependent signal transduction system response regulator Fis family    SO_4718 Synaptotagmin-4
action filter_type
action union
action find
entity Synaptotagmin-4
relation cell component
action find
entity tungstate-responsive two component Sigma54-dependent signal transduction system response regulator Fis family    SO_4718
relation cell component
type cellular component
{'OR': [['Synaptotagmin-4', 'cell component', {'concept': 'cellular component'}], ['tungstate-responsive two component Sigma54-dependent signal transduction system response regulator Fis family    SO_4718', 'cell component', {'concept': 'cellular component'}]]}
SELECT DISTINCT ?b WHERE { { { resource:Synaptotagmin-4 property:cell_component ?b } UNION { resource:tungstate-responsive_two_component_Sigma54-dependent_signal_transduction_system_response_regulator_Fis_family____SO_4718 property:cell_component ?b } } . ?b rdf:type ontology:cellular_component }
[]
cellular component
Q29548 Q3824358 Q14864390
SYSTEM
plasma membrane, intracellular, synaptic vesicle membrane
Q29548 Q3824358 Q14864390
OR((Q21118828,P681,c(Q5058355)), (Q23599214,P681,c(Q5058355)))
action filter_type
action union
action find
entity Q21118828
relation P681
action find
entity Q23599214
relation P681
type Q5058355
Components of Synaptotagmin-4 or tungstate-responsive two component Sigma54-dependent signal transduction system response regulator Fis family SO_4718 are the [ANSWERS]
{'OR': [['Q21118828', 'P681', {'concept': 'Q5058355'}], ['Q23599214', 'P681', {'concept': 'Q5058355'}]]}
SELECT DISTINCT ?b WHERE { { { resource:Q21118828 property:P681 ?b } UNION { resource:Q23599214 property:P681 ?b } } . ?b rdf:type ontology:Q5058355 }
plasma membrane intracellular synaptic vesicle membrane
Components of Synaptotagmin-4 or tungstate-responsive two component Sigma54-dependent signal transduction system response regulator Fis family SO_4718 are the plasma membrane, intracellular and synaptic vesicle membrane
plasma membrane intracellular synaptic vesicle membrane
action filter_type
action union
action find
entity Synaptotagmin-4
relation cell component
action find
entity tungstate-responsive two component Sigma54-dependent signal transduction system response regulator Fis family    SO_4718
relation cell component
type cellular component
{'OR': [['Synaptotagmin-4', 'cell component', {'concept': 'cellular component'}], ['tungstate-responsive two component Sigma54-dependent signal transduction system response regulator Fis family    SO_4718', 'cell component', {'concept': 'cellular component'}]]}
SELECT DISTINCT ?b WHERE { { { resource:Synaptotagmin-4 property:cell_component ?b } UNION { resource:tungstate-responsive_two_component_Sigma54-dependent_signal_transduction_system_response_regulator_Fis_family____SO_4718 property:cell_component ?b } } . ?b rdf:type ontology:cellular_component }
[]