Simple Question (Direct)
Simple Question
Q23445953
P703
Q631147
USER
Where is fructose-bisphosphate aldolase    HI0524 found ?
(Q23445953,P703,c(Q631147))
action filter_type
action find
entity Q23445953
relation P703
type Q631147
['Q23445953', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:Q631147 . resource:Q23445953 property:P703 ?x }
fructose-bisphosphate aldolase    HI0524
action filter_type
action find
entity fructose-bisphosphate aldolase    HI0524
relation found in taxon
type infraspecific name
['fructose-bisphosphate aldolase    HI0524', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:infraspecific_name . resource:fructose-bisphosphate_aldolase____HI0524 property:found_in_taxon ?x }
[]
infraspecific name
Q21102948
SYSTEM
Haemophilus influenzae Rd KW20
Q21102948
(Q23445953,P703,c(Q631147))
action filter_type
action find
entity Q23445953
relation P703
type Q631147
Fructose-bisphosphate aldolase HI0524 is found in [ANSWER]
['Q23445953', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:Q631147 . resource:Q23445953 property:P703 ?x }
Haemophilus influenzae Rd KW20
Fructose-bisphosphate aldolase HI0524 is found in Haemophilus influenzae Rd KW20
Haemophilus influenzae Rd KW20
action filter_type
action find
entity fructose-bisphosphate aldolase    HI0524
relation found in taxon
type infraspecific name
['fructose-bisphosphate aldolase    HI0524', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:infraspecific_name . resource:fructose-bisphosphate_aldolase____HI0524 property:found_in_taxon ?x }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23445953
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(c(Q863908),P688,Q21102948)
action filter_type
action find_reverse
entity Q23445953
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q21102948']
SELECT DISTINCT ?l WHERE { ?l property:P688 resource:Q23445953 . ?l rdf:type ontology:Q863908 }
fructose-bisphosphate aldolase    HI0524
action filter_type
action find_reverse
entity fructose-bisphosphate aldolase    HI0524
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Haemophilus influenzae Rd KW20']
SELECT DISTINCT ?l WHERE { ?l property:encodes resource:fructose-bisphosphate_aldolase____HI0524 . ?l rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23327710
SYSTEM
fructose-bisphosphate aldolase    HI0524
Q23327710
(c(Q863908),P688,Q21102948)
action filter_type
action find_reverse
entity Q23445953
relation P688
type Q863908
Fructose-bisphosphate aldolase HI0524 encodes that nutrient
[{'concept': 'Q863908'}, 'P688', 'Q21102948']
SELECT DISTINCT ?l WHERE { ?l property:P688 resource:Q23445953 . ?l rdf:type ontology:Q863908 }
fructose-bisphosphate aldolase    HI0524
Fructose-bisphosphate aldolase HI0524 encodes that nutrient
fructose-bisphosphate aldolase    HI0524
action filter_type
action find_reverse
entity fructose-bisphosphate aldolase    HI0524
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Haemophilus influenzae Rd KW20']
SELECT DISTINCT ?l WHERE { ?l property:encodes resource:fructose-bisphosphate_aldolase____HI0524 . ?l rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|3 entities, 2 direct, 2(direct) are query entities, subject is indirect
Q23327710 Q23445953 Q22233337
P688
Q181394
USER
Does that nucleic acid sequence encodes fructose-bisphosphate aldolase    HI0524 and endonuclease III    Rv3674c ?
(Q23327710,P688,Q23445953) (Q23327710,P688,Q22233337)
action is_in
entity Q23327710
action intersection
action find_reverse
entity Q23445953
relation P688
action find_reverse
entity Q22233337
relation P688
['Q23327710', 'P688', 'Q23445953'] ['Q23327710', 'P688', 'Q22233337']
ASK WHERE { resource:Q23327710 property:P688 resource:Q23445953 . resource:Q23327710 property:P688 resource:Q22233337 }
fructose-bisphosphate aldolase    HI0524 fructose-bisphosphate aldolase    HI0524 endonuclease III    Rv3674c
action is_in
entity fructose-bisphosphate aldolase    HI0524
action intersection
action find_reverse
entity fructose-bisphosphate aldolase    HI0524
relation encodes
action find_reverse
entity endonuclease III    Rv3674c
relation encodes
['fructose-bisphosphate aldolase    HI0524', 'encodes', 'fructose-bisphosphate aldolase    HI0524'] ['fructose-bisphosphate aldolase    HI0524', 'encodes', 'endonuclease III    Rv3674c']
ASK WHERE { resource:fructose-bisphosphate_aldolase____HI0524 property:encodes resource:fructose-bisphosphate_aldolase____HI0524 . resource:fructose-bisphosphate_aldolase____HI0524 property:encodes resource:endonuclease_III____Rv3674c }
[]
nutrient
SYSTEM
YES and NO respectively
(Q23327710,P688,Q23445953) (Q23327710,P688,Q22233337)
action is_in
entity Q23327710
action intersection
action find_reverse
entity Q23445953
relation P688
action find_reverse
entity Q22233337
relation P688
[ANSWER]
['Q23327710', 'P688', 'Q23445953'] ['Q23327710', 'P688', 'Q22233337']
ASK WHERE { resource:Q23327710 property:P688 resource:Q23445953 . resource:Q23327710 property:P688 resource:Q22233337 }
YES and NO respectively
action is_in
entity fructose-bisphosphate aldolase    HI0524
action intersection
action find_reverse
entity fructose-bisphosphate aldolase    HI0524
relation encodes
action find_reverse
entity endonuclease III    Rv3674c
relation encodes
['fructose-bisphosphate aldolase    HI0524', 'encodes', 'fructose-bisphosphate aldolase    HI0524'] ['fructose-bisphosphate aldolase    HI0524', 'encodes', 'endonuclease III    Rv3674c']
ASK WHERE { resource:fructose-bisphosphate_aldolase____HI0524 property:encodes resource:fructose-bisphosphate_aldolase____HI0524 . resource:fructose-bisphosphate_aldolase____HI0524 property:encodes resource:endonuclease_III____Rv3674c }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23327710
P702
Q181394
USER
What is encoded by that nucleic acid sequence ?
action filter_type
action find_reverse
entity Q23327710
relation P702
type Q181394
SELECT DISTINCT ?x WHERE { ?x property:P702 resource:Q23327710 . ?x rdf:type ontology:Q181394 }
fructose-bisphosphate aldolase    HI0524
action filter_type
action find_reverse
entity fructose-bisphosphate aldolase    HI0524
relation encoded by
type nutrient
SELECT DISTINCT ?x WHERE { ?x property:encoded_by resource:fructose-bisphosphate_aldolase____HI0524 . ?x rdf:type ontology:nutrient }
[]
nutrient
Q23445953
SYSTEM
fructose-bisphosphate aldolase    HI0524
Q23445953
action filter_type
action find_reverse
entity Q23327710
relation P702
type Q181394
Fructose-bisphosphate aldolase HI0524 is encoded by that nucleic acid sequence
SELECT DISTINCT ?x WHERE { ?x property:P702 resource:Q23327710 . ?x rdf:type ontology:Q181394 }
fructose-bisphosphate aldolase    HI0524
Fructose-bisphosphate aldolase HI0524 is encoded by that nucleic acid sequence
fructose-bisphosphate aldolase    HI0524
action filter_type
action find_reverse
entity fructose-bisphosphate aldolase    HI0524
relation encoded by
type nutrient
SELECT DISTINCT ?x WHERE { ?x property:encoded_by resource:fructose-bisphosphate_aldolase____HI0524 . ?x rdf:type ontology:nutrient }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q181394 Q79529 Q181394
USER
How many nutrients do around 42 chemical substances or nutrients contact with ?
(c(Q79529)|c(Q181394),P129,c(Q181394))
action count
action approx
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
value 42
[[{'concept': 'Q79529'}, {'concept': 'Q181394'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?b ) AS ?o ) WHERE { FILTER ( ?h = 42 ) . { SELECT DISTINCT ?b ( COUNT ( ?n ) AS ?h ) WHERE { VALUES ( ?x ) { ( ontology:Q79529 ) ( ontology:Q181394 ) } . ?n rdf:type ?x } GROUP BY ?b } }
action count
action approx
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
value 42
[[{'concept': 'chemical substance'}, {'concept': 'nutrient'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?b ) AS ?o ) WHERE { FILTER ( ?h = 42 ) . { SELECT DISTINCT ?b ( COUNT ( ?n ) AS ?h ) WHERE { VALUES ( ?x ) { ( ontology:chemical_substance ) ( ontology:nutrient ) } . ?n rdf:type ?x } GROUP BY ?b } }
[]
nutrient chemical substance nutrient
SYSTEM
4
Q4639596 Q21108118 Q21115043 Q1949517
(c(Q79529)|c(Q181394),P129,c(Q181394))
action count
action approx
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q79529
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
value 42
[ANSWER]
[[{'concept': 'Q79529'}, {'concept': 'Q181394'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?b ) AS ?o ) WHERE { FILTER ( ?h = 42 ) . { SELECT DISTINCT ?b ( COUNT ( ?n ) AS ?h ) WHERE { VALUES ( ?x ) { ( ontology:Q79529 ) ( ontology:Q181394 ) } . ?n rdf:type ?x } GROUP BY ?b } }
5-hydroxytryptamine receptor 2B 5-hydroxytryptamine receptor 2C 5-hydroxytryptamine receptor 1A 5-hydroxytryptamine receptor 2A
4
action count
action approx
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
value 42
[[{'concept': 'chemical substance'}, {'concept': 'nutrient'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?b ) AS ?o ) WHERE { FILTER ( ?h = 42 ) . { SELECT DISTINCT ?b ( COUNT ( ?n ) AS ?h ) WHERE { VALUES ( ?x ) { ( ontology:chemical_substance ) ( ontology:nutrient ) } . ?n rdf:type ?x } GROUP BY ?b } }
[]
Logical Reasoning (All)
Logical|Intersection|Multiple_Relation
Q21102987 Q22233337
P703 P688
Q863908
USER
Which nucleic acid sequences encodes endonuclease III    Rv3674c and are a part of the taxon Mycobacterium tuberculosis H37Rv ?
AND((c(Q863908),P688,Q22233337), (c(Q863908),P703,Q21102987))
action filter_type
action intersection
action find_reverse
entity Q22233337
relation P688
action find_reverse
entity Q21102987
relation P703
type Q863908
{'AND': [[{'concept': 'Q863908'}, 'P688', 'Q22233337'], [{'concept': 'Q863908'}, 'P703', 'Q21102987']]}
SELECT DISTINCT ?r WHERE { ?r rdf:type ontology:Q863908 . ?r property:P688 resource:Q22233337 . ?r property:P703 resource:Q21102987 }
Mycobacterium tuberculosis H37Rv endonuclease III    Rv3674c
action filter_type
action intersection
action find_reverse
entity endonuclease III    Rv3674c
relation encodes
action find_reverse
entity Mycobacterium tuberculosis H37Rv
relation found in taxon
type nucleic acid sequence
{'AND': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'endonuclease III    Rv3674c'], [{'concept': 'nucleic acid sequence'}, 'found in taxon', 'Mycobacterium tuberculosis H37Rv']]}
SELECT DISTINCT ?r WHERE { ?r rdf:type ontology:nucleic_acid_sequence . ?r property:encodes resource:endonuclease_III____Rv3674c . ?r property:found_in_taxon resource:Mycobacterium_tuberculosis_H37Rv }
[]
nucleic acid sequence
Q22228799
SYSTEM
endonuclease III    Rv3674c
Q22228799
AND((c(Q863908),P688,Q22233337), (c(Q863908),P703,Q21102987))
action filter_type
action intersection
action find_reverse
entity Q22233337
relation P688
action find_reverse
entity Q21102987
relation P703
type Q863908
Endonuclease III Rv3674c encodes endonuclease III Rv3674c and are a part of the taxon Mycobacterium tuberculosis H37Rv
{'AND': [[{'concept': 'Q863908'}, 'P688', 'Q22233337'], [{'concept': 'Q863908'}, 'P703', 'Q21102987']]}
SELECT DISTINCT ?r WHERE { ?r rdf:type ontology:Q863908 . ?r property:P688 resource:Q22233337 . ?r property:P703 resource:Q21102987 }
endonuclease III    Rv3674c
Endonuclease III Rv3674c encodes endonuclease III Rv3674c and are a part of the taxon Mycobacterium tuberculosis H37Rv
endonuclease III    Rv3674c
action filter_type
action intersection
action find_reverse
entity endonuclease III    Rv3674c
relation encodes
action find_reverse
entity Mycobacterium tuberculosis H37Rv
relation found in taxon
type nucleic acid sequence
{'AND': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'endonuclease III    Rv3674c'], [{'concept': 'nucleic acid sequence'}, 'found in taxon', 'Mycobacterium tuberculosis H37Rv']]}
SELECT DISTINCT ?r WHERE { ?r rdf:type ontology:nucleic_acid_sequence . ?r property:encodes resource:endonuclease_III____Rv3674c . ?r property:found_in_taxon resource:Mycobacterium_tuberculosis_H37Rv }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, subject is indirect
Q22228799 Q22233337
P688
Q181394
USER
Does that nucleic acid sequence encode endonuclease III    Rv3674c ?
(Q22228799,P688,Q22233337)
action is_in
entity Q22233337
action find
entity Q22228799
relation P688
['Q22228799', 'P688', 'Q22233337']
ASK WHERE { resource:Q22228799 property:P688 resource:Q22233337 }
endonuclease III    Rv3674c endonuclease III    Rv3674c
action is_in
entity endonuclease III    Rv3674c
action find
entity endonuclease III    Rv3674c
relation encodes
['endonuclease III    Rv3674c', 'encodes', 'endonuclease III    Rv3674c']
ASK WHERE { resource:endonuclease_III____Rv3674c property:encodes resource:endonuclease_III____Rv3674c }
[]
nutrient
SYSTEM
YES
(Q22228799,P688,Q22233337)
action is_in
entity Q22233337
action find
entity Q22228799
relation P688
[ANSWER]
['Q22228799', 'P688', 'Q22233337']
ASK WHERE { resource:Q22228799 property:P688 resource:Q22233337 }
Yes
action is_in
entity endonuclease III    Rv3674c
action find
entity endonuclease III    Rv3674c
relation encodes
['endonuclease III    Rv3674c', 'encodes', 'endonuclease III    Rv3674c']
ASK WHERE { resource:endonuclease_III____Rv3674c property:encodes resource:endonuclease_III____Rv3674c }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q23445953 Q14762260
P682
Q1057
USER
Is a biological process that fructose-bisphosphate aldolase    HI0524 is involved in carbohydrate metabolic process ?
(Q23445953,P682,Q14762260)
action is_in
entity Q14762260
action find
entity Q23445953
relation P682
['Q23445953', 'P682', 'Q14762260']
ASK WHERE { resource:Q23445953 property:P682 resource:Q14762260 }
fructose-bisphosphate aldolase    HI0524 carbohydrate metabolic process
action is_in
entity carbohydrate metabolic process
action find
entity fructose-bisphosphate aldolase    HI0524
relation biological process
['fructose-bisphosphate aldolase    HI0524', 'biological process', 'carbohydrate metabolic process']
ASK WHERE { resource:fructose-bisphosphate_aldolase____HI0524 property:biological_process resource:carbohydrate_metabolic_process }
[]
metabolic process
SYSTEM
YES
(Q23445953,P682,Q14762260)
action is_in
entity Q14762260
action find
entity Q23445953
relation P682
[ANSWER]
['Q23445953', 'P682', 'Q14762260']
ASK WHERE { resource:Q23445953 property:P682 resource:Q14762260 }
Yes
action is_in
entity carbohydrate metabolic process
action find
entity fructose-bisphosphate aldolase    HI0524
relation biological process
['fructose-bisphosphate aldolase    HI0524', 'biological process', 'carbohydrate metabolic process']
ASK WHERE { resource:fructose-bisphosphate_aldolase____HI0524 property:biological_process resource:carbohydrate_metabolic_process }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23445953
P680
Q44424
USER
Which chemical bonds represent molecular function of that nutrient ?
action filter_type
action find
entity Q23445953
relation P680
type Q44424
SELECT DISTINCT ?g WHERE { resource:Q23445953 property:P680 ?g . ?g rdf:type ontology:Q44424 }
fructose-bisphosphate aldolase    HI0524
action filter_type
action find
entity fructose-bisphosphate aldolase    HI0524
relation molecular function
type chemical bond
SELECT DISTINCT ?g WHERE { resource:fructose-bisphosphate_aldolase____HI0524 property:molecular_function ?g . ?g rdf:type ontology:chemical_bond }
[]
chemical bond
Q14633865 Q13667380
SYSTEM
zinc ion binding, metal ion binding
Q14633865 Q13667380
action filter_type
action find
entity Q23445953
relation P680
type Q44424
[ANSWERS] represent molecular function of that nutrient
SELECT DISTINCT ?g WHERE { resource:Q23445953 property:P680 ?g . ?g rdf:type ontology:Q44424 }
zinc ion binding metal ion binding
Zinc ion binding and metal ion binding represent molecular function of that nutrient
zinc ion binding metal ion binding
action filter_type
action find
entity fructose-bisphosphate aldolase    HI0524
relation molecular function
type chemical bond
SELECT DISTINCT ?g WHERE { resource:fructose-bisphosphate_aldolase____HI0524 property:molecular_function ?g . ?g rdf:type ontology:chemical_bond }
[]