Simple Question (Direct)
Simple Question
Q21111273
P702
Q863908
USER
What encodes Protein argonaute-3 ?
(Q21111273,P702,c(Q863908))
action filter_type
action find
entity Q21111273
relation P702
type Q863908
['Q21111273', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?w WHERE { resource:Q21111273 property:P702 ?w . ?w rdf:type ontology:Q863908 }
Protein argonaute-3
action filter_type
action find
entity Protein argonaute-3
relation encoded by
type nucleic acid sequence
['Protein argonaute-3', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?w WHERE { resource:Protein_argonaute-3 property:encoded_by ?w . ?w rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18053041
SYSTEM
AGO3
Q18053041
(Q21111273,P702,c(Q863908))
action filter_type
action find
entity Q21111273
relation P702
type Q863908
[ANSWER] encodes Protein argonaute-3
['Q21111273', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?w WHERE { resource:Q21111273 property:P702 ?w . ?w rdf:type ontology:Q863908 }
AGO3
AGO3 encodes Protein argonaute-3
AGO3
action filter_type
action find
entity Protein argonaute-3
relation encoded by
type nucleic acid sequence
['Protein argonaute-3', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?w WHERE { resource:Protein_argonaute-3 property:encoded_by ?w . ?w rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21111273
P681
Q15989253
USER
Which parts are components of that nutrient ?
(Q18053041,P681,c(Q15989253))
action filter_type
action find
entity Q21111273
relation P681
type Q15989253
['Q18053041', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?k WHERE { resource:Q21111273 property:P681 ?k . ?k rdf:type ontology:Q15989253 }
Protein argonaute-3
action filter_type
action find
entity Protein argonaute-3
relation cell component
type part
['AGO3', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?k WHERE { resource:Protein_argonaute-3 property:cell_component ?k . ?k rdf:type ontology:part }
[]
part
Q79899 Q14349455
SYSTEM
cytoplasm, membrane
Q79899 Q14349455
(Q18053041,P681,c(Q15989253))
action filter_type
action find
entity Q21111273
relation P681
type Q15989253
The [ANSWERS] are components of that nutrient
['Q18053041', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?k WHERE { resource:Q21111273 property:P681 ?k . ?k rdf:type ontology:Q15989253 }
cytoplasm membrane
The cytoplasm and membrane are components of that nutrient
cytoplasm membrane
action filter_type
action find
entity Protein argonaute-3
relation cell component
type part
['AGO3', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?k WHERE { resource:Protein_argonaute-3 property:cell_component ?k . ?k rdf:type ontology:part }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q18053041
P703
Q16521
USER
Where is AGO3 found ?
(Q18053041,P703,c(Q16521))
action filter_type
action find
entity Q18053041
relation P703
type Q16521
['Q18053041', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?p WHERE { resource:Q18053041 property:P703 ?p . ?p rdf:type ontology:Q16521 }
AGO3
action filter_type
action find
entity AGO3
relation found in taxon
type taxon
['AGO3', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?p WHERE { resource:AGO3 property:found_in_taxon ?p . ?p rdf:type ontology:taxon }
[]
taxon
Q15978631
SYSTEM
Homo sapiens
Q15978631
(Q18053041,P703,c(Q16521))
action filter_type
action find
entity Q18053041
relation P703
type Q16521
AGO3 is found in [ANSWER]
['Q18053041', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?p WHERE { resource:Q18053041 property:P703 ?p . ?p rdf:type ontology:Q16521 }
Homo sapiens
AGO3 is found in Homo sapiens
Homo sapiens
action filter_type
action find
entity AGO3
relation found in taxon
type taxon
['AGO3', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?p WHERE { resource:AGO3 property:found_in_taxon ?p . ?p rdf:type ontology:taxon }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q18053041
P684
Q863908
USER
Which nucleic acid sequence is an orthologous gene for AGO3 ?
(Q18053041,P684,c(Q863908))
action filter_type
action find
entity Q18053041
relation P684
type Q863908
['Q18053041', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?h WHERE { ?h rdf:type ontology:Q863908 . resource:Q18053041 property:P684 ?h }
AGO3
action filter_type
action find
entity AGO3
relation ortholog
type nucleic acid sequence
['AGO3', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?h WHERE { ?h rdf:type ontology:nucleic_acid_sequence . resource:AGO3 property:ortholog ?h }
[]
nucleic acid sequence
Q18296517
SYSTEM
Ago3
Q18296517
(Q18053041,P684,c(Q863908))
action filter_type
action find
entity Q18053041
relation P684
type Q863908
[ANSWER] is an orthologous gene for AGO3
['Q18053041', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?h WHERE { ?h rdf:type ontology:Q863908 . resource:Q18053041 property:P684 ?h }
Ago3
Ago3 is an orthologous gene for AGO3
Ago3
action filter_type
action find
entity AGO3
relation ortholog
type nucleic acid sequence
['AGO3', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?h WHERE { ?h rdf:type ontology:nucleic_acid_sequence . resource:AGO3 property:ortholog ?h }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18296517
P688
Q181394
USER
What is encoded by that nucleic acid sequence ?
(Q18296517,P688,c(Q181394))
action filter_type
action find
entity Q18296517
relation P688
type Q181394
['Q18296517', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?t WHERE { ?t rdf:type ontology:Q181394 . resource:Q18296517 property:P688 ?t }
Ago3
action filter_type
action find
entity Ago3
relation encodes
type nutrient
['Ago3', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?t WHERE { ?t rdf:type ontology:nutrient . resource:Ago3 property:encodes ?t }
[]
nutrient
Q21498900
SYSTEM
Protein argonaute-3
Q21498900
(Q18296517,P688,c(Q181394))
action filter_type
action find
entity Q18296517
relation P688
type Q181394
The [ANSWER] is encoded by that nucleic acid sequence
['Q18296517', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?t WHERE { ?t rdf:type ontology:Q181394 . resource:Q18296517 property:P688 ?t }
Protein argonaute-3
The Protein argonaute-3 is encoded by that nucleic acid sequence
Protein argonaute-3
action filter_type
action find
entity Ago3
relation encodes
type nutrient
['Ago3', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?t WHERE { ?t rdf:type ontology:nutrient . resource:Ago3 property:encodes ?t }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type|Indirect
P688
Q863908
USER
How many nucleic acid sequences encode that nutrient ?
(c(Q863908),P688,Q21498900)
action count
action filter_type
action find_reverse
entity Q21498900
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q21498900']
SELECT DISTINCT ( COUNT ( ?d ) AS ?p ) WHERE { ?d property:P688 resource:Q21498900 . ?d rdf:type ontology:Q863908 }
action count
action filter_type
action find_reverse
entity Protein argonaute-3
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Protein argonaute-3']
SELECT DISTINCT ( COUNT ( ?d ) AS ?p ) WHERE { ?d property:encodes resource:Protein_argonaute-3 . ?d rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
SYSTEM
1
Q18296517
(c(Q863908),P688,Q21498900)
action count
action filter_type
action find_reverse
entity Q21498900
relation P688
type Q863908
[ANSWER]
[{'concept': 'Q863908'}, 'P688', 'Q21498900']
SELECT DISTINCT ( COUNT ( ?d ) AS ?p ) WHERE { ?d property:P688 resource:Q21498900 . ?d rdf:type ontology:Q863908 }
Ago3
1
action count
action filter_type
action find_reverse
entity Protein argonaute-3
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Protein argonaute-3']
SELECT DISTINCT ( COUNT ( ?d ) AS ?p ) WHERE { ?d property:encodes resource:Protein_argonaute-3 . ?d rdf:type ontology:nucleic_acid_sequence }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type
Q18053041
P688
Q181394
USER
How many nutrients are AGO3 an encoding of ?
(Q18053041,P688,c(Q181394))
action count
action filter_type
action find
entity Q18053041
relation P688
type Q181394
['Q18053041', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?d ) AS ?q ) WHERE { ?d rdf:type ontology:Q181394 . resource:Q18053041 property:P688 ?d }
AGO3
action count
action filter_type
action find
entity AGO3
relation encodes
type nutrient
['AGO3', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?d ) AS ?q ) WHERE { ?d rdf:type ontology:nutrient . resource:AGO3 property:encodes ?d }
[]
nutrient
SYSTEM
1
Q21111273
(Q18053041,P688,c(Q181394))
action count
action filter_type
action find
entity Q18053041
relation P688
type Q181394
[ANSWER]
['Q18053041', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?d ) AS ?q ) WHERE { ?d rdf:type ontology:Q181394 . resource:Q18053041 property:P688 ?d }
Protein argonaute-3
1
action count
action filter_type
action find
entity AGO3
relation encodes
type nutrient
['AGO3', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?d ) AS ?q ) WHERE { ?d rdf:type ontology:nutrient . resource:AGO3 property:encodes ?d }
[]
Quantitative Reasoning (All)
Quantitative|Atleast/ Atmost/ Approx. the same/Equal|Single entity type
P682
Q1057 Q181394
USER
Which metabolic processes are approximately 3167 nutrients involved in ?
(c(Q181394),P682,c(Q1057))
action approx
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
value 3167
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?v WHERE { { SELECT DISTINCT ?v ( COUNT ( ?l ) AS ?t ) WHERE { ?v rdf:type ontology:Q1057 . ?l rdf:type ontology:Q181394 . ?l property:P682 ?v } GROUP BY ?v } . FILTER ( ?t = 3167 ) }
action approx
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
value 3167
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?v WHERE { { SELECT DISTINCT ?v ( COUNT ( ?l ) AS ?t ) WHERE { ?v rdf:type ontology:metabolic_process . ?l rdf:type ontology:nutrient . ?l property:biological_process ?v } GROUP BY ?v } . FILTER ( ?t = 3167 ) }
[]
metabolic process nutrient
Q14863351 Q14762260 Q14349667
SYSTEM
signal transduction by protein phosphorylation, carbohydrate metabolic process, lipid metabolic process
Q14863351 Q14762260 Q14349667
(c(Q181394),P682,c(Q1057))
action approx
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
value 3167
The [ANSWERS] are approximately 3167 nutrients involved in
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?v WHERE { { SELECT DISTINCT ?v ( COUNT ( ?l ) AS ?t ) WHERE { ?v rdf:type ontology:Q1057 . ?l rdf:type ontology:Q181394 . ?l property:P682 ?v } GROUP BY ?v } . FILTER ( ?t = 3167 ) }
signal transduction by protein phosphorylation carbohydrate metabolic process lipid metabolic process
The signal transduction by protein phosphorylation, carbohydrate metabolic process and lipid metabolic process are approximately 3167 nutrients involved in
signal transduction by protein phosphorylation carbohydrate metabolic process lipid metabolic process
action approx
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
value 3167
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?v WHERE { { SELECT DISTINCT ?v ( COUNT ( ?l ) AS ?t ) WHERE { ?v rdf:type ontology:metabolic_process . ?l rdf:type ontology:nutrient . ?l property:biological_process ?v } GROUP BY ?v } . FILTER ( ?t = 3167 ) }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Logical operators
Q15978631
P703
Q1993433 Q11173
USER
How many signaling molecules or chemical compounds are found in Homo sapiens ?
(c(Q1993433),P703,Q15978631) (c(Q11173),P703,Q15978631)
action count
action union
action filter_type
action find_reverse
entity Q15978631
relation P703
type Q1993433
action filter_type
action find_reverse
entity Q15978631
relation P703
type Q11173
[{'concept': 'Q1993433'}, 'P703', 'Q15978631'] [{'concept': 'Q11173'}, 'P703', 'Q15978631']
SELECT DISTINCT ( COUNT ( ?c ) AS ?s ) WHERE { { ?c rdf:type ontology:Q1993433 . ?c property:P703 resource:Q15978631 } UNION { ?c property:P703 resource:Q15978631 . ?c rdf:type ontology:Q11173 } }
Homo sapiens
action count
action union
action filter_type
action find_reverse
entity Homo sapiens
relation found in taxon
type signaling molecule
action filter_type
action find_reverse
entity Homo sapiens
relation found in taxon
type chemical compound
[{'concept': 'signaling molecule'}, 'found in taxon', 'Homo sapiens'] [{'concept': 'chemical compound'}, 'found in taxon', 'Homo sapiens']
SELECT DISTINCT ( COUNT ( ?c ) AS ?s ) WHERE { { ?c rdf:type ontology:signaling_molecule . ?c property:found_in_taxon resource:Homo_sapiens } UNION { ?c property:found_in_taxon resource:Homo_sapiens . ?c rdf:type ontology:chemical_compound } }
[]
signaling molecule chemical compound
SYSTEM
4
Q211544 Q6718329 Q13645602 Q185690
(c(Q1993433),P703,Q15978631) (c(Q11173),P703,Q15978631)
action count
action union
action filter_type
action find_reverse
entity Q15978631
relation P703
type Q1993433
action filter_type
action find_reverse
entity Q15978631
relation P703
type Q11173
[ANSWER]
[{'concept': 'Q1993433'}, 'P703', 'Q15978631'] [{'concept': 'Q11173'}, 'P703', 'Q15978631']
SELECT DISTINCT ( COUNT ( ?c ) AS ?s ) WHERE { { ?c rdf:type ontology:Q1993433 . ?c property:P703 resource:Q15978631 } UNION { ?c property:P703 resource:Q15978631 . ?c rdf:type ontology:Q11173 } }
thyroid-stimulating hormone MT-RNR1 MT-RNR2 Corticotropin
4
action count
action union
action filter_type
action find_reverse
entity Homo sapiens
relation found in taxon
type signaling molecule
action filter_type
action find_reverse
entity Homo sapiens
relation found in taxon
type chemical compound
[{'concept': 'signaling molecule'}, 'found in taxon', 'Homo sapiens'] [{'concept': 'chemical compound'}, 'found in taxon', 'Homo sapiens']
SELECT DISTINCT ( COUNT ( ?c ) AS ?s ) WHERE { { ?c rdf:type ontology:signaling_molecule . ?c property:found_in_taxon resource:Homo_sapiens } UNION { ?c property:found_in_taxon resource:Homo_sapiens . ?c rdf:type ontology:chemical_compound } }
[]