Simple Question (Direct)
Simple Question
Q22325520
P702
Q863908
USER
Which gene encodes sugar ABC transporter membrane protein    HMPREF0421_20223 ?
(Q22325520,P702,c(Q863908))
action filter_type
action find
entity Q22325520
relation P702
type Q863908
['Q22325520', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?i WHERE { resource:Q22325520 property:P702 ?i . ?i rdf:type ontology:Q863908 }
sugar ABC transporter membrane protein    HMPREF0421_20223
action filter_type
action find
entity sugar ABC transporter membrane protein    HMPREF0421_20223
relation encoded by
type nucleic acid sequence
['sugar ABC transporter membrane protein    HMPREF0421_20223', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?i WHERE { resource:sugar_ABC_transporter_membrane_protein____HMPREF0421_20223 property:encoded_by ?i . ?i rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q22322096
SYSTEM
sugar ABC transporter membrane protein    HMPREF0421_20223
Q22322096
(Q22325520,P702,c(Q863908))
action filter_type
action find
entity Q22325520
relation P702
type Q863908
Sugar ABC transporter membrane protein HMPREF0421 20223 encodes sugar ABC transporter membrane protein HMPREF0421_20223
['Q22325520', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?i WHERE { resource:Q22325520 property:P702 ?i . ?i rdf:type ontology:Q863908 }
sugar ABC transporter membrane protein    HMPREF0421_20223
Sugar ABC transporter membrane protein HMPREF0421 20223 encodes sugar ABC transporter membrane protein HMPREF0421_20223
sugar ABC transporter membrane protein    HMPREF0421_20223
action filter_type
action find
entity sugar ABC transporter membrane protein    HMPREF0421_20223
relation encoded by
type nucleic acid sequence
['sugar ABC transporter membrane protein    HMPREF0421_20223', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?i WHERE { resource:sugar_ABC_transporter_membrane_protein____HMPREF0421_20223 property:encoded_by ?i . ?i rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q22325520
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(c(Q863908),P688,Q22322096)
action filter_type
action find_reverse
entity Q22325520
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q22322096']
SELECT DISTINCT ?g WHERE { ?g rdf:type ontology:Q863908 . ?g property:P688 resource:Q22325520 }
sugar ABC transporter membrane protein    HMPREF0421_20223
action filter_type
action find_reverse
entity sugar ABC transporter membrane protein    HMPREF0421_20223
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'sugar ABC transporter membrane protein    HMPREF0421_20223']
SELECT DISTINCT ?g WHERE { ?g rdf:type ontology:nucleic_acid_sequence . ?g property:encodes resource:sugar_ABC_transporter_membrane_protein____HMPREF0421_20223 }
[]
nucleic acid sequence
Q22322096
SYSTEM
sugar ABC transporter membrane protein    HMPREF0421_20223
Q22322096
(c(Q863908),P688,Q22322096)
action filter_type
action find_reverse
entity Q22325520
relation P688
type Q863908
Protein sugar ABC transporter membrane protein HMPREF0421 20223 encodes that nutrient
[{'concept': 'Q863908'}, 'P688', 'Q22322096']
SELECT DISTINCT ?g WHERE { ?g rdf:type ontology:Q863908 . ?g property:P688 resource:Q22325520 }
sugar ABC transporter membrane protein    HMPREF0421_20223
Protein sugar ABC transporter membrane protein HMPREF0421 20223 encodes that nutrient
sugar ABC transporter membrane protein    HMPREF0421_20223
action filter_type
action find_reverse
entity sugar ABC transporter membrane protein    HMPREF0421_20223
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'sugar ABC transporter membrane protein    HMPREF0421_20223']
SELECT DISTINCT ?g WHERE { ?g rdf:type ontology:nucleic_acid_sequence . ?g property:encodes resource:sugar_ABC_transporter_membrane_protein____HMPREF0421_20223 }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Logical operators
Q22325520
P681
Q15989253 Q5058355
USER
How many parts and cellular components are the cell components of sugar ABC transporter membrane protein    HMPREF0421_20223 ?
(Q22325520,P681,c(Q15989253)) (Q22325520,P681,c(Q5058355))
action count
action union
action filter_type
action find
entity Q22325520
relation P681
type Q15989253
action filter_type
action find
entity Q22325520
relation P681
type Q5058355
['Q22325520', 'P681', {'concept': 'Q15989253'}] ['Q22325520', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ( COUNT ( ?h ) AS ?u ) WHERE { { resource:Q22325520 property:P681 ?h . ?h rdf:type ontology:Q15989253 } UNION { resource:Q22325520 property:P681 ?h . ?h rdf:type ontology:Q5058355 } }
sugar ABC transporter membrane protein    HMPREF0421_20223
action count
action union
action filter_type
action find
entity sugar ABC transporter membrane protein    HMPREF0421_20223
relation cell component
type part
action filter_type
action find
entity sugar ABC transporter membrane protein    HMPREF0421_20223
relation cell component
type cellular component
['sugar ABC transporter membrane protein    HMPREF0421_20223', 'cell component', {'concept': 'part'}] ['sugar ABC transporter membrane protein    HMPREF0421_20223', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ( COUNT ( ?h ) AS ?u ) WHERE { { resource:sugar_ABC_transporter_membrane_protein____HMPREF0421_20223 property:cell_component ?h . ?h rdf:type ontology:part } UNION { resource:sugar_ABC_transporter_membrane_protein____HMPREF0421_20223 property:cell_component ?h . ?h rdf:type ontology:cellular_component } }
[]
part cellular component
SYSTEM
1 parts and 1 cellular components
Q29548 Q14349455
(Q22325520,P681,c(Q15989253)) (Q22325520,P681,c(Q5058355))
action count
action union
action filter_type
action find
entity Q22325520
relation P681
type Q15989253
action filter_type
action find
entity Q22325520
relation P681
type Q5058355
[ANSWER]
['Q22325520', 'P681', {'concept': 'Q15989253'}] ['Q22325520', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ( COUNT ( ?h ) AS ?u ) WHERE { { resource:Q22325520 property:P681 ?h . ?h rdf:type ontology:Q15989253 } UNION { resource:Q22325520 property:P681 ?h . ?h rdf:type ontology:Q5058355 } }
plasma membrane membrane
1 parts and 1 cellular components
action count
action union
action filter_type
action find
entity sugar ABC transporter membrane protein    HMPREF0421_20223
relation cell component
type part
action filter_type
action find
entity sugar ABC transporter membrane protein    HMPREF0421_20223
relation cell component
type cellular component
['sugar ABC transporter membrane protein    HMPREF0421_20223', 'cell component', {'concept': 'part'}] ['sugar ABC transporter membrane protein    HMPREF0421_20223', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ( COUNT ( ?h ) AS ?u ) WHERE { { resource:sugar_ABC_transporter_membrane_protein____HMPREF0421_20223 property:cell_component ?h . ?h rdf:type ontology:part } UNION { resource:sugar_ABC_transporter_membrane_protein____HMPREF0421_20223 property:cell_component ?h . ?h rdf:type ontology:cellular_component } }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q22325520
P703
Q631147
USER
Which taxon is sugar ABC transporter membrane protein    HMPREF0421_20223 a part of ?
(Q22325520,P703,c(Q631147))
action filter_type
action find
entity Q22325520
relation P703
type Q631147
['Q22325520', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?c WHERE { resource:Q22325520 property:P703 ?c . ?c rdf:type ontology:Q631147 }
sugar ABC transporter membrane protein    HMPREF0421_20223
action filter_type
action find
entity sugar ABC transporter membrane protein    HMPREF0421_20223
relation found in taxon
type infraspecific name
['sugar ABC transporter membrane protein    HMPREF0421_20223', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?c WHERE { resource:sugar_ABC_transporter_membrane_protein____HMPREF0421_20223 property:found_in_taxon ?c . ?c rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102992
SYSTEM
Gardnerella vaginalis ATCC 14019
Q21102992
(Q22325520,P703,c(Q631147))
action filter_type
action find
entity Q22325520
relation P703
type Q631147
[ANSWER] is sugar ABC transporter membrane protein HMPREF0421_20223 a part of
['Q22325520', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?c WHERE { resource:Q22325520 property:P703 ?c . ?c rdf:type ontology:Q631147 }
Gardnerella vaginalis ATCC 14019
Gardnerella vaginalis ATCC 14019 is sugar ABC transporter membrane protein HMPREF0421_20223 a part of
Gardnerella vaginalis ATCC 14019
action filter_type
action find
entity sugar ABC transporter membrane protein    HMPREF0421_20223
relation found in taxon
type infraspecific name
['sugar ABC transporter membrane protein    HMPREF0421_20223', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?c WHERE { resource:sugar_ABC_transporter_membrane_protein____HMPREF0421_20223 property:found_in_taxon ?c . ?c rdf:type ontology:infraspecific_name }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q23228047
Q631147
USER
And how about ComE operon protein 2    LSL_0679?
(Q23228047,P703,c(Q631147))
action filter_type
action find
entity Q23228047
relation P703
type Q631147
['Q23228047', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?d WHERE { ?d rdf:type ontology:Q631147 . resource:Q23228047 property:P703 ?d }
ComE operon protein 2    LSL_0679
action filter_type
action find
entity ComE operon protein 2    LSL_0679
relation found in taxon
type infraspecific name
['ComE operon protein 2    LSL_0679', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?d WHERE { ?d rdf:type ontology:infraspecific_name . resource:ComE_operon_protein_2____LSL_0679 property:found_in_taxon ?d }
[]
infraspecific name
Q21102980
SYSTEM
Lactobacillus salivarius UCC118
Q21102980
(Q23228047,P703,c(Q631147))
action filter_type
action find
entity Q23228047
relation P703
type Q631147
[ANSWER]
['Q23228047', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?d WHERE { ?d rdf:type ontology:Q631147 . resource:Q23228047 property:P703 ?d }
Lactobacillus salivarius UCC118
Lactobacillus salivarius UCC118
action filter_type
action find
entity ComE operon protein 2    LSL_0679
relation found in taxon
type infraspecific name
['ComE operon protein 2    LSL_0679', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?d WHERE { ?d rdf:type ontology:infraspecific_name . resource:ComE_operon_protein_2____LSL_0679 property:found_in_taxon ?d }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q21132095
Q5058355
USER
And what about Low-density lipoprotein receptor-related protein 6?
(Q21132095,P681,c(Q5058355))
action filter_type
action find
entity Q21132095
relation P681
type Q5058355
['Q21132095', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?i WHERE { resource:Q21132095 property:P681 ?i . ?i rdf:type ontology:Q5058355 }
Low-density lipoprotein receptor-related protein 6
action filter_type
action find
entity Low-density lipoprotein receptor-related protein 6
relation cell component
type cellular component
['Low-density lipoprotein receptor-related protein 6', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?i WHERE { resource:Low-density_lipoprotein_receptor-related_protein_6 property:cell_component ?i . ?i rdf:type ontology:cellular_component }
[]
cellular component
Q29548 Q14877465 Q79927
SYSTEM
plasma membrane, receptor complex, endoplasmic reticulum
Q189094 Q29548 Q14877465 Q79927
(Q21132095,P681,c(Q5058355))
action filter_type
action find
entity Q21132095
relation P681
type Q5058355
[ANSWERS]
['Q21132095', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?i WHERE { resource:Q21132095 property:P681 ?i . ?i rdf:type ontology:Q5058355 }
cell surface plasma membrane receptor complex endoplasmic reticulum
plasma membrane receptor complex endoplasmic reticulum
action filter_type
action find
entity Low-density lipoprotein receptor-related protein 6
relation cell component
type cellular component
['Low-density lipoprotein receptor-related protein 6', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?i WHERE { resource:Low-density_lipoprotein_receptor-related_protein_6 property:cell_component ?i . ?i rdf:type ontology:cellular_component }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Mult. entity type
Q29548 Q21097473
P681
Q181394
USER
How many nutrients have plasma membrane and cell pole as their cell component ?
(c(Q181394),P681,Q29548) (c(Q181394),P681,Q21097473)
action count
action intersection
action filter_type
action find_reverse
entity Q29548
relation P681
type Q181394
action filter_type
action find_reverse
entity Q21097473
relation P681
type Q181394
[{'concept': 'Q181394'}, 'P681', 'Q29548'] [{'concept': 'Q181394'}, 'P681', 'Q21097473']
SELECT DISTINCT ( COUNT ( ?s ) AS ?f ) WHERE { ?s property:P681 resource:Q29548 . ?s rdf:type ontology:Q181394 . ?s rdf:type ontology:Q181394 . ?s property:P681 resource:Q21097473 }
plasma membrane cell pole
action count
action intersection
action filter_type
action find_reverse
entity plasma membrane
relation cell component
type nutrient
action filter_type
action find_reverse
entity cell pole
relation cell component
type nutrient
[{'concept': 'nutrient'}, 'cell component', 'plasma membrane'] [{'concept': 'nutrient'}, 'cell component', 'cell pole']
SELECT DISTINCT ( COUNT ( ?s ) AS ?f ) WHERE { ?s property:cell_component resource:plasma_membrane . ?s rdf:type ontology:nutrient . ?s rdf:type ontology:nutrient . ?s property:cell_component resource:cell_pole }
[]
nutrient
SYSTEM
3
Q21136574 Q21981325 Q22234561
(c(Q181394),P681,Q29548) (c(Q181394),P681,Q21097473)
action count
action intersection
action filter_type
action find_reverse
entity Q29548
relation P681
type Q181394
action filter_type
action find_reverse
entity Q21097473
relation P681
type Q181394
[ANSWER]
[{'concept': 'Q181394'}, 'P681', 'Q29548'] [{'concept': 'Q181394'}, 'P681', 'Q21097473']
SELECT DISTINCT ( COUNT ( ?s ) AS ?f ) WHERE { ?s property:P681 resource:Q29548 . ?s rdf:type ontology:Q181394 . ?s rdf:type ontology:Q181394 . ?s property:P681 resource:Q21097473 }
Vang-like protein 2 Vang-like protein 2 chromosome partitioning protein ParB    Rv3917c
3
action count
action intersection
action filter_type
action find_reverse
entity plasma membrane
relation cell component
type nutrient
action filter_type
action find_reverse
entity cell pole
relation cell component
type nutrient
[{'concept': 'nutrient'}, 'cell component', 'plasma membrane'] [{'concept': 'nutrient'}, 'cell component', 'cell pole']
SELECT DISTINCT ( COUNT ( ?s ) AS ?f ) WHERE { ?s property:cell_component resource:plasma_membrane . ?s rdf:type ontology:nutrient . ?s rdf:type ontology:nutrient . ?s property:cell_component resource:cell_pole }
[]