Simple Question (Direct)
Simple Question
Q21102725
P703
Q16521
USER
Which taxon is Dual specificity tyrosine-phosphorylation-regulated kinase 2 found in ?
(Q21102725,P703,c(Q16521))
action filter_type
action find
entity Q21102725
relation P703
type Q16521
['Q21102725', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?r WHERE { resource:Q21102725 property:P703 ?r . ?r rdf:type ontology:Q16521 }
Dual specificity tyrosine-phosphorylation-regulated kinase 2
action filter_type
action find
entity Dual specificity tyrosine-phosphorylation-regulated kinase 2
relation found in taxon
type taxon
['Dual specificity tyrosine-phosphorylation-regulated kinase 2', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?r WHERE { resource:Dual_specificity_tyrosine-phosphorylation-regulated_kinase_2 property:found_in_taxon ?r . ?r rdf:type ontology:taxon }
[]
taxon
Q15978631
SYSTEM
Homo sapiens
Q15978631
(Q21102725,P703,c(Q16521))
action filter_type
action find
entity Q21102725
relation P703
type Q16521
[ANSWER] is Dual specificity tyrosine-phosphorylation-regulated kinase 2 found in
['Q21102725', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?r WHERE { resource:Q21102725 property:P703 ?r . ?r rdf:type ontology:Q16521 }
Homo sapiens
Homo sapiens is Dual specificity tyrosine-phosphorylation-regulated kinase 2 found in
Homo sapiens
action filter_type
action find
entity Dual specificity tyrosine-phosphorylation-regulated kinase 2
relation found in taxon
type taxon
['Dual specificity tyrosine-phosphorylation-regulated kinase 2', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?r WHERE { resource:Dual_specificity_tyrosine-phosphorylation-regulated_kinase_2 property:found_in_taxon ?r . ?r rdf:type ontology:taxon }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21102725
P681
Q15989253
USER
Which parts are the components of Dual specificity tyrosine-phosphorylation-regulated kinase 2 ?
(Q21102725,P681,c(Q15989253))
action filter_type
action find
entity Q21102725
relation P681
type Q15989253
['Q21102725', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?k WHERE { resource:Q21102725 property:P681 ?k . ?k rdf:type ontology:Q15989253 }
Dual specificity tyrosine-phosphorylation-regulated kinase 2
action filter_type
action find
entity Dual specificity tyrosine-phosphorylation-regulated kinase 2
relation cell component
type part
['Dual specificity tyrosine-phosphorylation-regulated kinase 2', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?k WHERE { resource:Dual_specificity_tyrosine-phosphorylation-regulated_kinase_2 property:cell_component ?k . ?k rdf:type ontology:part }
[]
part
Q79899 Q40260
SYSTEM
cytoplasm, nucleus
Q79899 Q40260
(Q21102725,P681,c(Q15989253))
action filter_type
action find
entity Q21102725
relation P681
type Q15989253
[ANSWERS] are the components of Dual specificity tyrosine-phosphorylation-regulated kinase 2
['Q21102725', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?k WHERE { resource:Q21102725 property:P681 ?k . ?k rdf:type ontology:Q15989253 }
cytoplasm nucleus
Cytoplasm and nucleus are the components of Dual specificity tyrosine-phosphorylation-regulated kinase 2
cytoplasm nucleus
action filter_type
action find
entity Dual specificity tyrosine-phosphorylation-regulated kinase 2
relation cell component
type part
['Dual specificity tyrosine-phosphorylation-regulated kinase 2', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?k WHERE { resource:Dual_specificity_tyrosine-phosphorylation-regulated_kinase_2 property:cell_component ?k . ?k rdf:type ontology:part }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q22292823
Q15989253
USER
And what about bacteriocin ABC transporter bacteriocin-binding protein    TDE0720?
(Q22292823,P681,c(Q15989253))
action filter_type
action find
entity Q22292823
relation P681
type Q15989253
['Q22292823', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?w WHERE { resource:Q22292823 property:P681 ?w . ?w rdf:type ontology:Q15989253 }
bacteriocin ABC transporter bacteriocin-binding protein    TDE0720
action filter_type
action find
entity bacteriocin ABC transporter bacteriocin-binding protein    TDE0720
relation cell component
type part
['bacteriocin ABC transporter bacteriocin-binding protein    TDE0720', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?w WHERE { resource:bacteriocin_ABC_transporter_bacteriocin-binding_protein____TDE0720 property:cell_component ?w . ?w rdf:type ontology:part }
[]
part
Q14349455
SYSTEM
membrane
Q14349455
(Q22292823,P681,c(Q15989253))
action filter_type
action find
entity Q22292823
relation P681
type Q15989253
[ANSWER]
['Q22292823', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?w WHERE { resource:Q22292823 property:P681 ?w . ?w rdf:type ontology:Q15989253 }
membrane
membrane
action filter_type
action find
entity bacteriocin ABC transporter bacteriocin-binding protein    TDE0720
relation cell component
type part
['bacteriocin ABC transporter bacteriocin-binding protein    TDE0720', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?w WHERE { resource:bacteriocin_ABC_transporter_bacteriocin-binding_protein____TDE0720 property:cell_component ?w . ?w rdf:type ontology:part }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q22292823
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(c(Q863908),P688,Q14349455)
action filter_type
action find_reverse
entity Q22292823
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q14349455']
SELECT DISTINCT ?c WHERE { ?c property:P688 resource:Q22292823 . ?c rdf:type ontology:Q863908 }
bacteriocin ABC transporter bacteriocin-binding protein    TDE0720
action filter_type
action find_reverse
entity bacteriocin ABC transporter bacteriocin-binding protein    TDE0720
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'membrane']
SELECT DISTINCT ?c WHERE { ?c property:encodes resource:bacteriocin_ABC_transporter_bacteriocin-binding_protein____TDE0720 . ?c rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q22288788
SYSTEM
bacteriocin ABC transporter bacteriocin-binding protein    TDE0720
Q22288788
(c(Q863908),P688,Q14349455)
action filter_type
action find_reverse
entity Q22292823
relation P688
type Q863908
Bacteriocin ABC transporter bacteriocin-binding protein TDE0720 encodes that nutrient
[{'concept': 'Q863908'}, 'P688', 'Q14349455']
SELECT DISTINCT ?c WHERE { ?c property:P688 resource:Q22292823 . ?c rdf:type ontology:Q863908 }
bacteriocin ABC transporter bacteriocin-binding protein    TDE0720
Bacteriocin ABC transporter bacteriocin-binding protein TDE0720 encodes that nutrient
bacteriocin ABC transporter bacteriocin-binding protein    TDE0720
action filter_type
action find_reverse
entity bacteriocin ABC transporter bacteriocin-binding protein    TDE0720
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'membrane']
SELECT DISTINCT ?c WHERE { ?c property:encodes resource:bacteriocin_ABC_transporter_bacteriocin-binding_protein____TDE0720 . ?c rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q22288788
P702
Q181394
USER
What is encoded by that nucleic acid sequence ?
(c(Q181394),P702,Q22288788)
action filter_type
action find_reverse
entity Q22288788
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q22288788']
SELECT DISTINCT ?o WHERE { ?o property:P702 resource:Q22288788 . ?o rdf:type ontology:Q181394 }
bacteriocin ABC transporter bacteriocin-binding protein    TDE0720
action filter_type
action find_reverse
entity bacteriocin ABC transporter bacteriocin-binding protein    TDE0720
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'bacteriocin ABC transporter bacteriocin-binding protein    TDE0720']
SELECT DISTINCT ?o WHERE { ?o property:encoded_by resource:bacteriocin_ABC_transporter_bacteriocin-binding_protein____TDE0720 . ?o rdf:type ontology:nutrient }
[]
nutrient
Q22292823
SYSTEM
bacteriocin ABC transporter bacteriocin-binding protein    TDE0720
Q22292823
(c(Q181394),P702,Q22288788)
action filter_type
action find_reverse
entity Q22288788
relation P702
type Q181394
Bacteriocin ABC transporter bacteriocin-binding protein TDE0720 is encoded by that nucleic acid sequence
[{'concept': 'Q181394'}, 'P702', 'Q22288788']
SELECT DISTINCT ?o WHERE { ?o property:P702 resource:Q22288788 . ?o rdf:type ontology:Q181394 }
bacteriocin ABC transporter bacteriocin-binding protein    TDE0720
Bacteriocin ABC transporter bacteriocin-binding protein TDE0720 is encoded by that nucleic acid sequence
bacteriocin ABC transporter bacteriocin-binding protein    TDE0720
action filter_type
action find_reverse
entity bacteriocin ABC transporter bacteriocin-binding protein    TDE0720
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'bacteriocin ABC transporter bacteriocin-binding protein    TDE0720']
SELECT DISTINCT ?o WHERE { ?o property:encoded_by resource:bacteriocin_ABC_transporter_bacteriocin-binding_protein____TDE0720 . ?o rdf:type ontology:nutrient }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q181394 Q181394 Q8386
USER
How many nutrients do exactly 21 nutrients and drugs interact with ?
(c(Q181394)|c(Q8386),P129,c(Q181394))
action count
action equal
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
value 21
[[{'concept': 'Q181394'}, {'concept': 'Q8386'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?m ) AS ?q ) WHERE { { SELECT DISTINCT ( COUNT ( ?e ) AS ?p ) ?m WHERE { { ?e property:P129 ?m . ?e rdf:type ontology:Q181394 . ?m rdf:type ontology:Q181394 } UNION { ?e property:P129 ?m . ?m rdf:type ontology:Q181394 . ?e rdf:type ontology:Q8386 } } GROUP BY ?m } . FILTER ( ?p = 21 ) }
action count
action equal
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
value 21
[[{'concept': 'nutrient'}, {'concept': 'drug'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?m ) AS ?q ) WHERE { { SELECT DISTINCT ( COUNT ( ?e ) AS ?p ) ?m WHERE { { ?e property:physically_interacts_with ?m . ?e rdf:type ontology:nutrient . ?m rdf:type ontology:nutrient } UNION { ?e property:physically_interacts_with ?m . ?m rdf:type ontology:nutrient . ?e rdf:type ontology:drug } } GROUP BY ?m } . FILTER ( ?p = 21 ) }
[]
nutrient nutrient drug
SYSTEM
4
Q5123372 Q21109355 Q4734894 Q4734891
(c(Q181394)|c(Q8386),P129,c(Q181394))
action count
action equal
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
value 21
[ANSWER]
[[{'concept': 'Q181394'}, {'concept': 'Q8386'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?m ) AS ?q ) WHERE { { SELECT DISTINCT ( COUNT ( ?e ) AS ?p ) ?m WHERE { { ?e property:P129 ?m . ?e rdf:type ontology:Q181394 . ?m rdf:type ontology:Q181394 } UNION { ?e property:P129 ?m . ?m rdf:type ontology:Q181394 . ?e rdf:type ontology:Q8386 } } GROUP BY ?m } . FILTER ( ?p = 21 ) }
Mu-type opioid receptor 5-hydroxytryptamine receptor 7 Alpha-2B adrenergic receptor Alpha-2C adrenergic receptor
4
action count
action equal
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
value 21
[[{'concept': 'nutrient'}, {'concept': 'drug'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?m ) AS ?q ) WHERE { { SELECT DISTINCT ( COUNT ( ?e ) AS ?p ) ?m WHERE { { ?e property:physically_interacts_with ?m . ?e rdf:type ontology:nutrient . ?m rdf:type ontology:nutrient } UNION { ?e property:physically_interacts_with ?m . ?m rdf:type ontology:nutrient . ?e rdf:type ontology:drug } } GROUP BY ?m } . FILTER ( ?p = 21 ) }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P361
Q15989253 Q15989253 Q5058355
USER
How many parts are atleast 4 parts or cellular components a part of ?
(c(Q15989253)|c(Q5058355),P361,c(Q15989253))
action count
action atleast
action union
action find_reverse_tuple_counts
relation P361
type Q15989253
type Q15989253
action find_reverse_tuple_counts
relation P361
type Q15989253
type Q5058355
value 4
[[{'concept': 'Q15989253'}, {'concept': 'Q5058355'}], 'P361', {'concept': 'Q15989253'}]
SELECT DISTINCT ( COUNT ( ?c ) AS ?f ) WHERE { { SELECT DISTINCT ( COUNT ( ?m ) AS ?p ) ?c WHERE { { ?m property:P361 ?c . ?c rdf:type ontology:Q15989253 . ?m rdf:type ontology:Q15989253 } UNION { ?m property:P361 ?c . ?c rdf:type ontology:Q15989253 . ?m rdf:type ontology:Q5058355 } } GROUP BY ?c } . FILTER ( ?p >= 4 ) }
action count
action atleast
action union
action find_reverse_tuple_counts
relation part of
type part
type part
action find_reverse_tuple_counts
relation part of
type part
type cellular component
value 4
[[{'concept': 'part'}, {'concept': 'cellular component'}], 'part of', {'concept': 'part'}]
SELECT DISTINCT ( COUNT ( ?c ) AS ?f ) WHERE { { SELECT DISTINCT ( COUNT ( ?m ) AS ?p ) ?c WHERE { { ?m property:part_of ?c . ?c rdf:type ontology:part . ?m rdf:type ontology:part } UNION { ?m property:part_of ?c . ?c rdf:type ontology:part . ?m rdf:type ontology:cellular_component } } GROUP BY ?c } . FILTER ( ?p >= 4 ) }
[]
part part cellular component
SYSTEM
44
Q24774274 Q24777276 Q24771060 Q24720263 Q24773317 Q24773030 Q24725230 Q24727168 Q24727158 Q24775380 Q24741257 Q187181 Q24724841 Q24780424 Q24787648 Q24772226 Q24780081 Q24777173 Q24721427 Q24784804 Q24773139 Q24769639 Q24772708 Q24780318 Q24772015 Q24723016 Q24741081 Q24725799 Q24783329 Q24739502 Q24739373 Q13486671 Q24723028 Q24769952 Q24773027 Q24742069 Q24783253 Q24777474 Q14645596 Q24724480 Q24769753 Q24788276 Q24720586 Q24777282
(c(Q15989253)|c(Q5058355),P361,c(Q15989253))
action count
action atleast
action union
action find_reverse_tuple_counts
relation P361
type Q15989253
type Q15989253
action find_reverse_tuple_counts
relation P361
type Q15989253
type Q5058355
value 4
[ANSWER]
[[{'concept': 'Q15989253'}, {'concept': 'Q5058355'}], 'P361', {'concept': 'Q15989253'}]
SELECT DISTINCT ( COUNT ( ?c ) AS ?f ) WHERE { { SELECT DISTINCT ( COUNT ( ?m ) AS ?p ) ?c WHERE { { ?m property:P361 ?c . ?c rdf:type ontology:Q15989253 . ?m rdf:type ontology:Q15989253 } UNION { ?m property:P361 ?c . ?c rdf:type ontology:Q15989253 . ?m rdf:type ontology:Q5058355 } } GROUP BY ?c } . FILTER ( ?p >= 4 ) }
Winged helix-turn-helix DNA-binding domain Cyclin-like Acyl-CoA N-acyltransferase Thiolase-like Polycystin cation channel L-Aspartase-like Pseudouridine synthase, catalytic domain Ubiquinol-cytochrome c reductase, iron-sulphur subunit Xanthine dehydrogenase, small subunit Pullulanase, type I Alanyl-tRNA synthetase, class IIc, core domain synapse DNA ligase D Armadillo-type fold Immunoglobulin-like fold DNA topoisomerase, type IIA-like domain Immunoglobulin E-set Transcription termination factor NusA Biotin carboxylation domain WD40/YVTN repeat-like-containing domain Rossmann-like alpha/beta/alpha sandwich fold Homeodomain-like ABC transporter-like Pullulanase, extracellular Cupredoxin Pectin lyase fold/virulence factor Lipid transport protein, beta-sheet shell Group II dsDNA virus coat/capsid protein DNA topoisomerase, type IA, central Armadillo-like helical RNA polymerase sigma-70 like domain turtle shell FERM domain NAD(P)-binding domain Nucleic acid-binding, OB-fold EF-hand domain pair Immunoglobulin-like domain RmlC-like jelly roll fold extracellular region RNA polymerase sigma-70 DNA topoisomerase I, eukaryotic-type Phosphoribosylaminoimidazole carboxylase, ATPase subunit Ribonuclease H-like domain RNA polymerase sigma factor RpoD, C-terminal
44
action count
action atleast
action union
action find_reverse_tuple_counts
relation part of
type part
type part
action find_reverse_tuple_counts
relation part of
type part
type cellular component
value 4
[[{'concept': 'part'}, {'concept': 'cellular component'}], 'part of', {'concept': 'part'}]
SELECT DISTINCT ( COUNT ( ?c ) AS ?f ) WHERE { { SELECT DISTINCT ( COUNT ( ?m ) AS ?p ) ?c WHERE { { ?m property:part_of ?c . ?c rdf:type ontology:part . ?m rdf:type ontology:part } UNION { ?m property:part_of ?c . ?c rdf:type ontology:part . ?m rdf:type ontology:cellular_component } } GROUP BY ?c } . FILTER ( ?p >= 4 ) }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21102725
P680
Q44424
USER
Which the chemical bonds that represents the molecular function of Dual specificity tyrosine-phosphorylation-regulated kinase 2 ?
(Q21102725,P680,c(Q44424))
action filter_type
action find
entity Q21102725
relation P680
type Q44424
['Q21102725', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?r WHERE { resource:Q21102725 property:P680 ?r . ?r rdf:type ontology:Q44424 }
Dual specificity tyrosine-phosphorylation-regulated kinase 2
action filter_type
action find
entity Dual specificity tyrosine-phosphorylation-regulated kinase 2
relation molecular function
type chemical bond
['Dual specificity tyrosine-phosphorylation-regulated kinase 2', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?r WHERE { resource:Dual_specificity_tyrosine-phosphorylation-regulated_kinase_2 property:molecular_function ?r . ?r rdf:type ontology:chemical_bond }
[]
chemical bond
Q14860850 Q14873986
SYSTEM
magnesium ion binding, manganese ion binding
Q14860850 Q14873986
(Q21102725,P680,c(Q44424))
action filter_type
action find
entity Q21102725
relation P680
type Q44424
Represents The [ANSWERS]
['Q21102725', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?r WHERE { resource:Q21102725 property:P680 ?r . ?r rdf:type ontology:Q44424 }
magnesium ion binding manganese ion binding
Represents The magnesium ion binding and manganese ion binding
magnesium ion binding manganese ion binding
action filter_type
action find
entity Dual specificity tyrosine-phosphorylation-regulated kinase 2
relation molecular function
type chemical bond
['Dual specificity tyrosine-phosphorylation-regulated kinase 2', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?r WHERE { resource:Dual_specificity_tyrosine-phosphorylation-regulated_kinase_2 property:molecular_function ?r . ?r rdf:type ontology:chemical_bond }
[]