Simple Question (Direct)
Simple Question
Q21987246
P702
Q863908
USER
Which gene encodes Homeobox protein MIXL1 ?
(Q21987246,P702,c(Q863908))
action filter_type
action find
entity Q21987246
relation P702
type Q863908
['Q21987246', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?j WHERE { resource:Q21987246 property:P702 ?j . ?j rdf:type ontology:Q863908 }
Homeobox protein MIXL1
action filter_type
action find
entity Homeobox protein MIXL1
relation encoded by
type nucleic acid sequence
['Homeobox protein MIXL1', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?j WHERE { resource:Homeobox_protein_MIXL1 property:encoded_by ?j . ?j rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18255919
SYSTEM
Mixl1
Q18255919
(Q21987246,P702,c(Q863908))
action filter_type
action find
entity Q21987246
relation P702
type Q863908
[ANSWER] encodes Homeobox protein MIXL1
['Q21987246', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?j WHERE { resource:Q21987246 property:P702 ?j . ?j rdf:type ontology:Q863908 }
Mixl1
Mixl1 encodes Homeobox protein MIXL1
Mixl1
action filter_type
action find
entity Homeobox protein MIXL1
relation encoded by
type nucleic acid sequence
['Homeobox protein MIXL1', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?j WHERE { resource:Homeobox_protein_MIXL1 property:encoded_by ?j . ?j rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21987246
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(c(Q863908),P688,Q18255919)
action filter_type
action find_reverse
entity Q21987246
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q18255919']
SELECT DISTINCT ?e WHERE { ?e property:P688 resource:Q21987246 . ?e rdf:type ontology:Q863908 }
Homeobox protein MIXL1
action filter_type
action find_reverse
entity Homeobox protein MIXL1
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Mixl1']
SELECT DISTINCT ?e WHERE { ?e property:encodes resource:Homeobox_protein_MIXL1 . ?e rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18255919
SYSTEM
Mixl1
Q18255919
(c(Q863908),P688,Q18255919)
action filter_type
action find_reverse
entity Q21987246
relation P688
type Q863908
[ANSWER] encodes that nutrient
[{'concept': 'Q863908'}, 'P688', 'Q18255919']
SELECT DISTINCT ?e WHERE { ?e property:P688 resource:Q21987246 . ?e rdf:type ontology:Q863908 }
Mixl1
Mixl1 encodes that nutrient
Mixl1
action filter_type
action find_reverse
entity Homeobox protein MIXL1
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Mixl1']
SELECT DISTINCT ?e WHERE { ?e property:encodes resource:Homeobox_protein_MIXL1 . ?e rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18255919
P684
Q863908
USER
What is an otrhologus gene for that one ?
(Q18255919,P684,c(Q863908))
action filter_type
action find
entity Q18255919
relation P684
type Q863908
['Q18255919', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?w WHERE { resource:Q18255919 property:P684 ?w . ?w rdf:type ontology:Q863908 }
Mixl1
action filter_type
action find
entity Mixl1
relation ortholog
type nucleic acid sequence
['Mixl1', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?w WHERE { resource:Mixl1 property:ortholog ?w . ?w rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18047309
SYSTEM
MIXL1
Q18047309
(Q18255919,P684,c(Q863908))
action filter_type
action find
entity Q18255919
relation P684
type Q863908
An otrhologus gene for that one is the [ANSWER]
['Q18255919', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?w WHERE { resource:Q18255919 property:P684 ?w . ?w rdf:type ontology:Q863908 }
MIXL1
An otrhologus gene for that one is the MIXL1
MIXL1
action filter_type
action find
entity Mixl1
relation ortholog
type nucleic acid sequence
['Mixl1', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?w WHERE { resource:Mixl1 property:ortholog ?w . ?w rdf:type ontology:nucleic_acid_sequence }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type
Q18255919
P702
Q181394
USER
How many nutrients are encoded by Mixl1 ?
(c(Q181394),P702,Q18255919)
action count
action filter_type
action find_reverse
entity Q18255919
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q18255919']
SELECT DISTINCT ( COUNT ( ?o ) AS ?e ) WHERE { ?o property:P702 resource:Q18255919 . ?o rdf:type ontology:Q181394 }
Mixl1
action count
action filter_type
action find_reverse
entity Mixl1
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'Mixl1']
SELECT DISTINCT ( COUNT ( ?o ) AS ?e ) WHERE { ?o property:encoded_by resource:Mixl1 . ?o rdf:type ontology:nutrient }
[]
nutrient
SYSTEM
1
Q21987246
(c(Q181394),P702,Q18255919)
action count
action filter_type
action find_reverse
entity Q18255919
relation P702
type Q181394
[ANSWER]
[{'concept': 'Q181394'}, 'P702', 'Q18255919']
SELECT DISTINCT ( COUNT ( ?o ) AS ?e ) WHERE { ?o property:P702 resource:Q18255919 . ?o rdf:type ontology:Q181394 }
Homeobox protein MIXL1
1
action count
action filter_type
action find_reverse
entity Mixl1
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'Mixl1']
SELECT DISTINCT ( COUNT ( ?o ) AS ?e ) WHERE { ?o property:encoded_by resource:Mixl1 . ?o rdf:type ontology:nutrient }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23121693
P703
Q631147
USER
Where is hypothetical protein    KPHS_p300340 found ?
(Q23121693,P703,c(Q631147))
action filter_type
action find
entity Q23121693
relation P703
type Q631147
['Q23121693', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?k WHERE { resource:Q23121693 property:P703 ?k . ?k rdf:type ontology:Q631147 }
hypothetical protein    KPHS_p300340
action filter_type
action find
entity hypothetical protein    KPHS_p300340
relation found in taxon
type infraspecific name
['hypothetical protein    KPHS_p300340', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?k WHERE { resource:hypothetical_protein____KPHS_p300340 property:found_in_taxon ?k . ?k rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102939
SYSTEM
Klebsiella pneumoniae subsp. pneumoniae HS11286
Q21102939
(Q23121693,P703,c(Q631147))
action filter_type
action find
entity Q23121693
relation P703
type Q631147
Hypothetical protein KPHS_p300340 is found in [ANSWER]
['Q23121693', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?k WHERE { resource:Q23121693 property:P703 ?k . ?k rdf:type ontology:Q631147 }
Klebsiella pneumoniae subsp. pneumoniae HS11286
Hypothetical protein KPHS_p300340 is found in Klebsiella pneumoniae subsp. pneumoniae HS11286
Klebsiella pneumoniae subsp. pneumoniae HS11286
action filter_type
action find
entity hypothetical protein    KPHS_p300340
relation found in taxon
type infraspecific name
['hypothetical protein    KPHS_p300340', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?k WHERE { resource:hypothetical_protein____KPHS_p300340 property:found_in_taxon ?k . ?k rdf:type ontology:infraspecific_name }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q21102939 Q24271897
P703
Q181394
USER
Is cellulose synthase catalytic subunit    KPHS_50400 a part of the taxon that infraspecific name ?
(Q24271897,P703,Q21102939)
action is_in
entity Q21102939
action find
entity Q24271897
relation P703
['Q24271897', 'P703', 'Q21102939']
ASK WHERE { resource:Q24271897 property:P703 resource:Q21102939 }
Klebsiella pneumoniae subsp. pneumoniae HS11286 cellulose synthase catalytic subunit    KPHS_50400
action is_in
entity Klebsiella pneumoniae subsp. pneumoniae HS11286
action find
entity cellulose synthase catalytic subunit    KPHS_50400
relation found in taxon
['cellulose synthase catalytic subunit    KPHS_50400', 'found in taxon', 'Klebsiella pneumoniae subsp. pneumoniae HS11286']
ASK WHERE { resource:cellulose_synthase_catalytic_subunit____KPHS_50400 property:found_in_taxon resource:Klebsiella_pneumoniae_subsp._pneumoniae_HS11286 }
[]
nutrient
SYSTEM
YES
(Q24271897,P703,Q21102939)
action is_in
entity Q21102939
action find
entity Q24271897
relation P703
[ANSWER]
['Q24271897', 'P703', 'Q21102939']
ASK WHERE { resource:Q24271897 property:P703 resource:Q21102939 }
Yes
action is_in
entity Klebsiella pneumoniae subsp. pneumoniae HS11286
action find
entity cellulose synthase catalytic subunit    KPHS_50400
relation found in taxon
['cellulose synthase catalytic subunit    KPHS_50400', 'found in taxon', 'Klebsiella pneumoniae subsp. pneumoniae HS11286']
ASK WHERE { resource:cellulose_synthase_catalytic_subunit____KPHS_50400 property:found_in_taxon resource:Klebsiella_pneumoniae_subsp._pneumoniae_HS11286 }
[]
Verification (Boolean) (All)
Verification|3 entities, all direct, 2 are query entities
Q18255919 Q24127681 Q21987246
P688
Q181394
USER
Does Mixl1 encode peptide ABC transporter ATP-binding protein    EAE_17570 and Homeobox protein MIXL1 ?
(Q18255919,P688,Q24127681) (Q18255919,P688,Q21987246)
action is_in
entity Q18255919
action intersection
action find_reverse
entity Q24127681
relation P688
action find_reverse
entity Q21987246
relation P688
['Q18255919', 'P688', 'Q24127681'] ['Q18255919', 'P688', 'Q21987246']
ASK WHERE { resource:Q18255919 property:P688 resource:Q24127681 . resource:Q18255919 property:P688 resource:Q21987246 }
Mixl1 peptide ABC transporter ATP-binding protein    EAE_17570 Homeobox protein MIXL1
action is_in
entity Mixl1
action intersection
action find_reverse
entity peptide ABC transporter ATP-binding protein    EAE_17570
relation encodes
action find_reverse
entity Homeobox protein MIXL1
relation encodes
['Mixl1', 'encodes', 'peptide ABC transporter ATP-binding protein    EAE_17570'] ['Mixl1', 'encodes', 'Homeobox protein MIXL1']
ASK WHERE { resource:Mixl1 property:encodes resource:peptide_ABC_transporter_ATP-binding_protein____EAE_17570 . resource:Mixl1 property:encodes resource:Homeobox_protein_MIXL1 }
[]
nutrient
SYSTEM
NO and YES respectively
(Q18255919,P688,Q24127681) (Q18255919,P688,Q21987246)
action is_in
entity Q18255919
action intersection
action find_reverse
entity Q24127681
relation P688
action find_reverse
entity Q21987246
relation P688
[ANSWER]
['Q18255919', 'P688', 'Q24127681'] ['Q18255919', 'P688', 'Q21987246']
ASK WHERE { resource:Q18255919 property:P688 resource:Q24127681 . resource:Q18255919 property:P688 resource:Q21987246 }
NO and YES respectively
action is_in
entity Mixl1
action intersection
action find_reverse
entity peptide ABC transporter ATP-binding protein    EAE_17570
relation encodes
action find_reverse
entity Homeobox protein MIXL1
relation encodes
['Mixl1', 'encodes', 'peptide ABC transporter ATP-binding protein    EAE_17570'] ['Mixl1', 'encodes', 'Homeobox protein MIXL1']
ASK WHERE { resource:Mixl1 property:encodes resource:peptide_ABC_transporter_ATP-binding_protein____EAE_17570 . resource:Mixl1 property:encodes resource:Homeobox_protein_MIXL1 }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23175129 Q18255919
P688
Q181394
USER
Which nutrients are Mixl1 or terminase, small subunit, internal deletion    EF1454 an encoding of ?
OR((Q18255919,P688,c(Q181394)), (Q23175129,P688,c(Q181394)))
action filter_type
action union
action find
entity Q18255919
relation P688
action find
entity Q23175129
relation P688
type Q181394
{'OR': [['Q18255919', 'P688', {'concept': 'Q181394'}], ['Q23175129', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?o WHERE { { ?l property:P688 ?o . VALUES ( ?l ) { ( resource:Q18255919 ) ( resource:Q23175129 ) } } . ?o rdf:type ontology:Q181394 }
terminase, small subunit, internal deletion    EF1454 Mixl1
action filter_type
action union
action find
entity Mixl1
relation encodes
action find
entity terminase, small subunit, internal deletion    EF1454
relation encodes
type nutrient
{'OR': [['Mixl1', 'encodes', {'concept': 'nutrient'}], ['terminase, small subunit, internal deletion    EF1454', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?o WHERE { { ?l property:encodes ?o . VALUES ( ?l ) { ( resource:Mixl1 ) ( resource:terminase,_small_subunit,_internal_deletion____EF1454 ) } } . ?o rdf:type ontology:nutrient }
[]
nutrient
Q21987246 Q23500971
SYSTEM
Homeobox protein MIXL1, terminase, small subunit, internal deletion    EF1454
Q21987246 Q23500971
OR((Q18255919,P688,c(Q181394)), (Q23175129,P688,c(Q181394)))
action filter_type
action union
action find
entity Q18255919
relation P688
action find
entity Q23175129
relation P688
type Q181394
[ANSWERS]
{'OR': [['Q18255919', 'P688', {'concept': 'Q181394'}], ['Q23175129', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?o WHERE { { ?l property:P688 ?o . VALUES ( ?l ) { ( resource:Q18255919 ) ( resource:Q23175129 ) } } . ?o rdf:type ontology:Q181394 }
Homeobox protein MIXL1 terminase, small subunit, internal deletion    EF1454
Homeobox protein MIXL1 and terminase, small subunit, internal deletion EF1454 are Mixl1 or terminase, small subunit, internal deletion EF1454 an encoding of
Homeobox protein MIXL1 terminase, small subunit, internal deletion    EF1454
action filter_type
action union
action find
entity Mixl1
relation encodes
action find
entity terminase, small subunit, internal deletion    EF1454
relation encodes
type nutrient
{'OR': [['Mixl1', 'encodes', {'concept': 'nutrient'}], ['terminase, small subunit, internal deletion    EF1454', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?o WHERE { { ?l property:encodes ?o . VALUES ( ?l ) { ( resource:Mixl1 ) ( resource:terminase,_small_subunit,_internal_deletion____EF1454 ) } } . ?o rdf:type ontology:nutrient }
[]