Simple Question (Direct)
Simple Question
Q7667890
P681
Q5058355
USER
Which cellular components are components of Cadherin-13 ?
(Q7667890,P681,c(Q5058355))
action filter_type
action find
entity Q7667890
relation P681
type Q5058355
['Q7667890', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?w WHERE { resource:Q7667890 property:P681 ?w . ?w rdf:type ontology:Q5058355 }
Cadherin-13
action filter_type
action find
entity Cadherin-13
relation cell component
type cellular component
['Cadherin-13', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?w WHERE { resource:Cadherin-13 property:cell_component ?w . ?w rdf:type ontology:cellular_component }
[]
cellular component
Q2914458 Q29548
SYSTEM
extracellular space, plasma membrane
Q2914458 Q29548
(Q7667890,P681,c(Q5058355))
action filter_type
action find
entity Q7667890
relation P681
type Q5058355
And [ANSWERS] are components of Cadherin-13
['Q7667890', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?w WHERE { resource:Q7667890 property:P681 ?w . ?w rdf:type ontology:Q5058355 }
extracellular space plasma membrane
And extracellular space and plasma membrane are components of Cadherin-13
extracellular space plasma membrane
action filter_type
action find
entity Cadherin-13
relation cell component
type cellular component
['Cadherin-13', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?w WHERE { resource:Cadherin-13 property:cell_component ?w . ?w rdf:type ontology:cellular_component }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q7667890
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(c(Q863908),P688,Q2914458) (c(Q863908),P688,Q29548)
action filter_type
action find_reverse
entity Q7667890
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q2914458'] [{'concept': 'Q863908'}, 'P688', 'Q29548']
SELECT DISTINCT ?p WHERE { ?p property:P688 resource:Q7667890 . ?p rdf:type ontology:Q863908 }
Cadherin-13
action filter_type
action find_reverse
entity Cadherin-13
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'extracellular space'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'plasma membrane']
SELECT DISTINCT ?p WHERE { ?p property:encodes resource:Cadherin-13 . ?p rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q15316113
SYSTEM
CDH13
Q15316113
(c(Q863908),P688,Q2914458) (c(Q863908),P688,Q29548)
action filter_type
action find_reverse
entity Q7667890
relation P688
type Q863908
[ANSWER] encodes that nutrient
[{'concept': 'Q863908'}, 'P688', 'Q2914458'] [{'concept': 'Q863908'}, 'P688', 'Q29548']
SELECT DISTINCT ?p WHERE { ?p property:P688 resource:Q7667890 . ?p rdf:type ontology:Q863908 }
CDH13
CDH13 encodes that nutrient
CDH13
action filter_type
action find_reverse
entity Cadherin-13
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'extracellular space'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'plasma membrane']
SELECT DISTINCT ?p WHERE { ?p property:encodes resource:Cadherin-13 . ?p rdf:type ontology:nucleic_acid_sequence }
[]
Quantitative Reasoning (All)
Quantitative|Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q181394 Q181394 Q8386
USER
Which nutrients do exactly 3 nutrients or drugs collaborate with ?
(c(Q181394)|c(Q8386),P129,c(Q181394))
action equal
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
value 3
[[{'concept': 'Q181394'}, {'concept': 'Q8386'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?d WHERE { { SELECT DISTINCT ?d ( COUNT ( ?s ) AS ?p ) WHERE { { ?s property:P129 ?d . ?d rdf:type ontology:Q181394 . ?s rdf:type ontology:Q8386 } UNION { ?d rdf:type ontology:Q181394 . ?s rdf:type ontology:Q181394 . ?s property:P129 ?d } } GROUP BY ?d } . FILTER ( ?p = 3 ) }
action equal
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
value 3
[[{'concept': 'nutrient'}, {'concept': 'drug'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?d WHERE { { SELECT DISTINCT ?d ( COUNT ( ?s ) AS ?p ) WHERE { { ?s property:physically_interacts_with ?d . ?d rdf:type ontology:nutrient . ?s rdf:type ontology:drug } UNION { ?d rdf:type ontology:nutrient . ?s rdf:type ontology:nutrient . ?s property:physically_interacts_with ?d } } GROUP BY ?d } . FILTER ( ?p = 3 ) }
[]
nutrient nutrient drug
Q909409 Q21108624 Q21173206
SYSTEM
Mast/stem cell growth factor receptor Kit, Platelet-derived growth factor receptor beta, Histone deacetylase 4
Q21109971 Q423701 Q21120424 Q21108624 Q424440 Q1486720 Q4789588 Q4789584 Q21136123 Q21109365 Q21107439 Q21103155 Q21109974 Q415976 Q21123244 Q21103207 Q21119828 Q21108482 Q7671495 Q21097491 Q21111162 Q21982210 Q417801 Q21120420 Q21173310 Q7390898 Q21111803 Q21120423 Q21125248 Q909409 Q21108338 Q21132004 Q12746111 Q21122493 Q7671468 Q7673856 Q21103198 Q21115961 Q21115962 Q21115965 Q21105176 Q21102075 Q5773160 Q21111833 Q21125253 Q21121233 Q21159525 Q21497936 Q904925 Q5009781 Q21173206 Q21173207 Q904241 Q22676802 Q7671477 Q21127141 Q21111265 Q21121816 Q21984383 Q5201201
(c(Q181394)|c(Q8386),P129,c(Q181394))
action equal
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
value 3
Exactly 3 nutrients or drugs collaborate with [ANSWERS]
[[{'concept': 'Q181394'}, {'concept': 'Q8386'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?d WHERE { { SELECT DISTINCT ?d ( COUNT ( ?s ) AS ?p ) WHERE { { ?s property:P129 ?d . ?d rdf:type ontology:Q181394 . ?s rdf:type ontology:Q8386 } UNION { ?d rdf:type ontology:Q181394 . ?s rdf:type ontology:Q181394 . ?s property:P129 ?d } } GROUP BY ?d } . FILTER ( ?p = 3 ) }
Cation channel sperm-associated protein 4 Coagulation factor X Prostaglandin E2 receptor EP2 subtype Platelet-derived growth factor receptor beta Cytochrome P450 3A4 Glutamate receptor 3 Vasopressin V2 receptor Vasopressin V1a receptor Solute carrier organic anion transporter family member 2B1 5-hydroxytryptamine receptor 4 Farnesyl pyrophosphate synthase Glycine receptor subunit alpha-1 Cation channel sperm-associated protein 3 Proto-oncogene tyrosine-protein kinase receptor Ret cGMP-inhibited 3',5'-cyclic phosphodiesterase B G-protein coupled bile acid receptor 1 ATP-sensitive inward rectifier potassium channel 8 DNA topoisomerase 2-alpha Transient receptor potential cation channel subfamily M member 8 Sodium/potassium-transporting ATPase subunit alpha-1 Acetylcholine receptor subunit alpha Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1 Extracellular calcium-sensing receptor Prostaglandin E2 receptor EP1 subtype Endothelin B receptor Sodium/glucose cotransporter 2 Voltage-dependent L-type calcium channel subunit alpha-1S Prostaglandin E2 receptor EP3 subtype Solute carrier organic anion transporter family member 1B3 Mast/stem cell growth factor receptor Kit Ribonucleoside-diphosphate reductase subunit M2 Endothelin-1 receptor Motilin receptor Prostaglandin F2-alpha receptor Short transient receptor potential channel 5 Substance-P receptor G-protein coupled receptor family C group 6 member A Glutamate receptor 1 Glutamate receptor 2 Glutamate receptor 4 Anoctamin-1 Acid-sensing ion channel 1 Histone deacetylase 5 Cation channel sperm-associated protein 2 Solute carrier organic anion transporter family member 1B1 Ribonucleoside-diphosphate reductase large subunit Ryanodine receptor 3 5-hydroxytryptamine receptor 3A Cytochrome P450 11B1, mitochondrial Receptor-type tyrosine-protein kinase FLT3 Histone deacetylase 4 Histone deacetylase 7 Sodium/glucose cotransporter 1 Thymidylate synthase Transient receptor potential cation channel subfamily M member 2 Sodium-coupled monocarboxylate transporter 1 Cation channel sperm-associated protein 1 P2Y purinoceptor 13 Voltage-dependent L-type calcium channel subunit alpha-1F Cysteinyl leukotriene receptor 1
Exactly 3 nutrients or drugs collaborate with Mast/stem cell growth factor receptor Kit, Platelet-derived growth factor receptor beta and Histone deacetylase 4
Mast/stem cell growth factor receptor Kit Platelet-derived growth factor receptor beta Histone deacetylase 4
action equal
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
value 3
[[{'concept': 'nutrient'}, {'concept': 'drug'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?d WHERE { { SELECT DISTINCT ?d ( COUNT ( ?s ) AS ?p ) WHERE { { ?s property:physically_interacts_with ?d . ?d rdf:type ontology:nutrient . ?s rdf:type ontology:drug } UNION { ?d rdf:type ontology:nutrient . ?s rdf:type ontology:nutrient . ?s property:physically_interacts_with ?d } } GROUP BY ?d } . FILTER ( ?p = 3 ) }
[]
Logical Reasoning (All)
Logical|Intersection|Single_Relation
Q5446453 Q909409
P129
Q8386
USER
Which drugs do Mast/stem cell growth factor receptor Kit and Fibroblast growth factor receptor 1 communicate with ?
AND((Q909409,P129,c(Q8386)), (Q5446453,P129,c(Q8386)))
action filter_type
action intersection
action find
entity Q909409
relation P129
action find
entity Q5446453
relation P129
type Q8386
{'AND': [['Q909409', 'P129', {'concept': 'Q8386'}], ['Q5446453', 'P129', {'concept': 'Q8386'}]]}
SELECT DISTINCT ?c WHERE { resource:Q5446453 property:P129 ?c . resource:Q909409 property:P129 ?c . ?c rdf:type ontology:Q8386 }
Fibroblast growth factor receptor 1 Mast/stem cell growth factor receptor Kit
action filter_type
action intersection
action find
entity Mast/stem cell growth factor receptor Kit
relation physically interacts with
action find
entity Fibroblast growth factor receptor 1
relation physically interacts with
type drug
{'AND': [['Mast/stem cell growth factor receptor Kit', 'physically interacts with', {'concept': 'drug'}], ['Fibroblast growth factor receptor 1', 'physically interacts with', {'concept': 'drug'}]]}
SELECT DISTINCT ?c WHERE { resource:Fibroblast_growth_factor_receptor_1 property:physically_interacts_with ?c . resource:Mast/stem_cell_growth_factor_receptor_Kit property:physically_interacts_with ?c . ?c rdf:type ontology:drug }
[]
drug
Q7157043 Q421136 Q417542
SYSTEM
pazopanib, sorafenib, sunitinib
Q7157043 Q421136 Q417542
AND((Q909409,P129,c(Q8386)), (Q5446453,P129,c(Q8386)))
action filter_type
action intersection
action find
entity Q909409
relation P129
action find
entity Q5446453
relation P129
type Q8386
[ANSWERS] do Mast/stem cell growth factor receptor Kit and Fibroblast growth factor receptor 1 communicate with
{'AND': [['Q909409', 'P129', {'concept': 'Q8386'}], ['Q5446453', 'P129', {'concept': 'Q8386'}]]}
SELECT DISTINCT ?c WHERE { resource:Q5446453 property:P129 ?c . resource:Q909409 property:P129 ?c . ?c rdf:type ontology:Q8386 }
pazopanib sorafenib sunitinib
Pazopanib, sorafenib and sunitinib do Mast/stem cell growth factor receptor Kit and Fibroblast growth factor receptor 1 communicate with
pazopanib sorafenib sunitinib
action filter_type
action intersection
action find
entity Mast/stem cell growth factor receptor Kit
relation physically interacts with
action find
entity Fibroblast growth factor receptor 1
relation physically interacts with
type drug
{'AND': [['Mast/stem cell growth factor receptor Kit', 'physically interacts with', {'concept': 'drug'}], ['Fibroblast growth factor receptor 1', 'physically interacts with', {'concept': 'drug'}]]}
SELECT DISTINCT ?c WHERE { resource:Fibroblast_growth_factor_receptor_1 property:physically_interacts_with ?c . resource:Mast/stem_cell_growth_factor_receptor_Kit property:physically_interacts_with ?c . ?c rdf:type ontology:drug }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q181394 Q181394 Q8386
USER
How many nutrients do exactly 6 nutrients or drugs contact with ?
(c(Q181394)|c(Q8386),P129,c(Q181394))
action count
action equal
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
value 6
[[{'concept': 'Q181394'}, {'concept': 'Q8386'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?e ) WHERE { { SELECT DISTINCT ?y ( COUNT ( ?q ) AS ?k ) WHERE { ?q rdf:type ?n . VALUES ( ?n ) { ( ontology:Q8386 ) ( ontology:Q181394 ) } } GROUP BY ?y } . FILTER ( ?k = 6 ) }
action count
action equal
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
value 6
[[{'concept': 'nutrient'}, {'concept': 'drug'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?e ) WHERE { { SELECT DISTINCT ?y ( COUNT ( ?q ) AS ?k ) WHERE { ?q rdf:type ?n . VALUES ( ?n ) { ( ontology:drug ) ( ontology:nutrient ) } } GROUP BY ?y } . FILTER ( ?k = 6 ) }
[]
nutrient nutrient drug
SYSTEM
8
Q415287 Q21114332 Q409867 Q21132917 Q21115819 Q21110532 Q21497937 Q424401
(c(Q181394)|c(Q8386),P129,c(Q181394))
action count
action equal
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
value 6
[ANSWER]
[[{'concept': 'Q181394'}, {'concept': 'Q8386'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?e ) WHERE { { SELECT DISTINCT ?y ( COUNT ( ?q ) AS ?k ) WHERE { ?q rdf:type ?n . VALUES ( ?n ) { ( ontology:Q8386 ) ( ontology:Q181394 ) } } GROUP BY ?y } . FILTER ( ?k = 6 ) }
Aromatase Tubulin beta chain Nuclear receptor subfamily 1 group I member 2 Carbonic anhydrase 14 Glutamate receptor ionotropic, NMDA 2C Potassium voltage-gated channel subfamily H member 1 5-hydroxytryptamine receptor 5A Epidermal growth factor receptor
8
action count
action equal
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
value 6
[[{'concept': 'nutrient'}, {'concept': 'drug'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?e ) WHERE { { SELECT DISTINCT ?y ( COUNT ( ?q ) AS ?k ) WHERE { ?q rdf:type ?n . VALUES ( ?n ) { ( ontology:drug ) ( ontology:nutrient ) } } GROUP BY ?y } . FILTER ( ?k = 6 ) }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q5446453
P702
Q863908
USER
Which gene encodes Fibroblast growth factor receptor 1 ?
(Q5446453,P702,c(Q863908))
action filter_type
action find
entity Q5446453
relation P702
type Q863908
['Q5446453', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?y WHERE { resource:Q5446453 property:P702 ?y . ?y rdf:type ontology:Q863908 }
Fibroblast growth factor receptor 1
action filter_type
action find
entity Fibroblast growth factor receptor 1
relation encoded by
type nucleic acid sequence
['Fibroblast growth factor receptor 1', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?y WHERE { resource:Fibroblast_growth_factor_receptor_1 property:encoded_by ?y . ?y rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q14914258
SYSTEM
FGFR1
Q14914258
(Q5446453,P702,c(Q863908))
action filter_type
action find
entity Q5446453
relation P702
type Q863908
1 [ANSWER] encodes Fibroblast growth factor receptor 1
['Q5446453', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?y WHERE { resource:Q5446453 property:P702 ?y . ?y rdf:type ontology:Q863908 }
FGFR1
1 FGFR1 encodes Fibroblast growth factor receptor 1
FGFR1
action filter_type
action find
entity Fibroblast growth factor receptor 1
relation encoded by
type nucleic acid sequence
['Fibroblast growth factor receptor 1', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?y WHERE { resource:Fibroblast_growth_factor_receptor_1 property:encoded_by ?y . ?y rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, subject is indirect
Q14914258 Q23626240
P688
Q181394
USER
Does that nucleic acid sequence encode hypothetical protein    PSPTO_1318 ?
(Q14914258,P688,Q23626240)
action is_in
entity Q23626240
action find
entity Q14914258
relation P688
['Q14914258', 'P688', 'Q23626240']
ASK WHERE { resource:Q14914258 property:P688 resource:Q23626240 }
FGFR1 hypothetical protein    PSPTO_1318
action is_in
entity hypothetical protein    PSPTO_1318
action find
entity FGFR1
relation encodes
['FGFR1', 'encodes', 'hypothetical protein    PSPTO_1318']
ASK WHERE { resource:FGFR1 property:encodes resource:hypothetical_protein____PSPTO_1318 }
[]
nutrient
SYSTEM
NO
(Q14914258,P688,Q23626240)
action is_in
entity Q23626240
action find
entity Q14914258
relation P688
[ANSWER]
['Q14914258', 'P688', 'Q23626240']
ASK WHERE { resource:Q14914258 property:P688 resource:Q23626240 }
No
action is_in
entity hypothetical protein    PSPTO_1318
action find
entity FGFR1
relation encodes
['FGFR1', 'encodes', 'hypothetical protein    PSPTO_1318']
ASK WHERE { resource:FGFR1 property:encodes resource:hypothetical_protein____PSPTO_1318 }
[]