Simple Question (Direct)
Simple Question
Q21103328
P702
Q863908
USER
Which gene encodes Serine/threonine-protein kinase haspin ?
(Q21103328,P702,c(Q863908))
action filter_type
action find
entity Q21103328
relation P702
type Q863908
['Q21103328', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?h WHERE { resource:Q21103328 property:P702 ?h . ?h rdf:type ontology:Q863908 }
Serine/threonine-protein kinase haspin
action filter_type
action find
entity Serine/threonine-protein kinase haspin
relation encoded by
type nucleic acid sequence
['Serine/threonine-protein kinase haspin', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?h WHERE { resource:Serine/threonine-protein_kinase_haspin property:encoded_by ?h . ?h rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18047330
SYSTEM
GSG2
Q18047330
(Q21103328,P702,c(Q863908))
action filter_type
action find
entity Q21103328
relation P702
type Q863908
Gene [ANSWER] encodes Serine/threonine-protein kinase haspin
['Q21103328', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?h WHERE { resource:Q21103328 property:P702 ?h . ?h rdf:type ontology:Q863908 }
GSG2
Gene GSG2 encodes Serine/threonine-protein kinase haspin
GSG2
action filter_type
action find
entity Serine/threonine-protein kinase haspin
relation encoded by
type nucleic acid sequence
['Serine/threonine-protein kinase haspin', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?h WHERE { resource:Serine/threonine-protein_kinase_haspin property:encoded_by ?h . ?h rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21103328
P681
Q15989253
USER
Which parts are components of that nutrient ?
(Q18047330,P681,c(Q15989253))
action filter_type
action find
entity Q21103328
relation P681
type Q15989253
['Q18047330', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?o WHERE { resource:Q21103328 property:P681 ?o . ?o rdf:type ontology:Q15989253 }
Serine/threonine-protein kinase haspin
action filter_type
action find
entity Serine/threonine-protein kinase haspin
relation cell component
type part
['GSG2', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?o WHERE { resource:Serine/threonine-protein_kinase_haspin property:cell_component ?o . ?o rdf:type ontology:part }
[]
part
Q79899 Q190769 Q40260
SYSTEM
cytoplasm, centrosome, nucleus
Q79899 Q190769 Q40260
(Q18047330,P681,c(Q15989253))
action filter_type
action find
entity Q21103328
relation P681
type Q15989253
[ANSWERS] are components of that nutrient
['Q18047330', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?o WHERE { resource:Q21103328 property:P681 ?o . ?o rdf:type ontology:Q15989253 }
cytoplasm centrosome nucleus
Cytoplasm, centrosome and nucleus are components of that nutrient
cytoplasm centrosome nucleus
action filter_type
action find
entity Serine/threonine-protein kinase haspin
relation cell component
type part
['GSG2', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?o WHERE { resource:Serine/threonine-protein_kinase_haspin property:cell_component ?o . ?o rdf:type ontology:part }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q18047330
P684
Q863908
USER
Which is the species that has GSG2 as its orthologous gene ?
(c(Q863908),P684,Q18047330)
action filter_type
action find
entity Q18047330
relation P684
type Q863908
[{'concept': 'Q863908'}, 'P684', 'Q18047330']
SELECT DISTINCT ?m WHERE { resource:Q18047330 property:P684 ?m . ?m rdf:type ontology:Q863908 }
GSG2
action filter_type
action find
entity GSG2
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'GSG2']
SELECT DISTINCT ?m WHERE { resource:GSG2 property:ortholog ?m . ?m rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18250990
SYSTEM
Gsg2
Q18250990
(c(Q863908),P684,Q18047330)
action filter_type
action find
entity Q18047330
relation P684
type Q863908
[ANSWER] is the species that has GSG2 as its orthologous gene
[{'concept': 'Q863908'}, 'P684', 'Q18047330']
SELECT DISTINCT ?m WHERE { resource:Q18047330 property:P684 ?m . ?m rdf:type ontology:Q863908 }
Gsg2
Gsg2 is the species that has GSG2 as its orthologous gene
Gsg2
action filter_type
action find
entity GSG2
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'GSG2']
SELECT DISTINCT ?m WHERE { resource:GSG2 property:ortholog ?m . ?m rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|3 entities, 2 direct, 2(direct) are query entities, subject is indirect
Q18250990 Q21494532 Q21112214
P688
Q181394
USER
Does that nucleic acid sequence encodes Serine/threonine-protein kinase haspin and Dehydrogenase/reductase SDR family member 7 ?
(Q18250990,P688,Q21494532) (Q18250990,P688,Q21112214)
action is_in
entity Q18250990
action intersection
action find_reverse
entity Q21494532
relation P688
action find_reverse
entity Q21112214
relation P688
['Q18250990', 'P688', 'Q21494532'] ['Q18250990', 'P688', 'Q21112214']
ASK WHERE { resource:Q18250990 property:P688 resource:Q21112214 . resource:Q18250990 property:P688 resource:Q21494532 }
Gsg2 Serine/threonine-protein kinase haspin Dehydrogenase/reductase SDR family member 7
action is_in
entity Gsg2
action intersection
action find_reverse
entity Serine/threonine-protein kinase haspin
relation encodes
action find_reverse
entity Dehydrogenase/reductase SDR family member 7
relation encodes
['Gsg2', 'encodes', 'Serine/threonine-protein kinase haspin'] ['Gsg2', 'encodes', 'Dehydrogenase/reductase SDR family member 7']
ASK WHERE { resource:Gsg2 property:encodes resource:Dehydrogenase/reductase_SDR_family_member_7 . resource:Gsg2 property:encodes resource:Serine/threonine-protein_kinase_haspin }
[]
nutrient
SYSTEM
YES and NO respectively
(Q18250990,P688,Q21494532) (Q18250990,P688,Q21112214)
action is_in
entity Q18250990
action intersection
action find_reverse
entity Q21494532
relation P688
action find_reverse
entity Q21112214
relation P688
[ANSWER]
['Q18250990', 'P688', 'Q21494532'] ['Q18250990', 'P688', 'Q21112214']
ASK WHERE { resource:Q18250990 property:P688 resource:Q21112214 . resource:Q18250990 property:P688 resource:Q21494532 }
YES and NO respectively
action is_in
entity Gsg2
action intersection
action find_reverse
entity Serine/threonine-protein kinase haspin
relation encodes
action find_reverse
entity Dehydrogenase/reductase SDR family member 7
relation encodes
['Gsg2', 'encodes', 'Serine/threonine-protein kinase haspin'] ['Gsg2', 'encodes', 'Dehydrogenase/reductase SDR family member 7']
ASK WHERE { resource:Gsg2 property:encodes resource:Dehydrogenase/reductase_SDR_family_member_7 . resource:Gsg2 property:encodes resource:Serine/threonine-protein_kinase_haspin }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q18047330
P703
Q16521
USER
Where is GSG2 found ?
(Q18047330,P703,c(Q16521))
action filter_type
action find
entity Q18047330
relation P703
type Q16521
['Q18047330', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?a WHERE { resource:Q18047330 property:P703 ?a . ?a rdf:type ontology:Q16521 }
GSG2
action filter_type
action find
entity GSG2
relation found in taxon
type taxon
['GSG2', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?a WHERE { resource:GSG2 property:found_in_taxon ?a . ?a rdf:type ontology:taxon }
[]
taxon
Q15978631
SYSTEM
Homo sapiens
Q15978631
(Q18047330,P703,c(Q16521))
action filter_type
action find
entity Q18047330
relation P703
type Q16521
GSG2 is found in [ANSWER]
['Q18047330', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?a WHERE { resource:Q18047330 property:P703 ?a . ?a rdf:type ontology:Q16521 }
Homo sapiens
GSG2 is found in Homo sapiens
Homo sapiens
action filter_type
action find
entity GSG2
relation found in taxon
type taxon
['GSG2', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?a WHERE { resource:GSG2 property:found_in_taxon ?a . ?a rdf:type ontology:taxon }
[]
Comparative Reasoning (All)
Comparative|More/Less|Single entity type
Q21251956
P566
Q82799 Q16521
USER
Which names are a basionyms of less number of taxons than Atriplex conduplicata ?
(c(Q16521),P566,c(Q82799))
action less
action find_reverse_tuple_counts
relation P566
type Q82799
type Q16521
action count
action filter_type
action find_reverse
entity Q21251956
relation P566
type Q16521
[{'concept': 'Q16521'}, 'P566', {'concept': 'Q82799'}]
SELECT DISTINCT ?z WHERE { { SELECT DISTINCT ?z ( COUNT ( ?e ) AS ?o ) WHERE { ?e property:P566 ?z . ?z rdf:type ontology:Q82799 . ?e rdf:type ontology:Q16521 } GROUP BY ?z } . FILTER ( ?o < ?b ) . { SELECT DISTINCT ( COUNT ( ?x ) AS ?b ) WHERE { ?x property:P566 resource:Q21251956 . ?x rdf:type ontology:Q16521 } } }
Atriplex conduplicata
action less
action find_reverse_tuple_counts
relation basionym
type name
type taxon
action count
action filter_type
action find_reverse
entity Atriplex conduplicata
relation basionym
type taxon
[{'concept': 'taxon'}, 'basionym', {'concept': 'name'}]
SELECT DISTINCT ?z WHERE { { SELECT DISTINCT ?z ( COUNT ( ?e ) AS ?o ) WHERE { ?e property:basionym ?z . ?z rdf:type ontology:name . ?e rdf:type ontology:taxon } GROUP BY ?z } . FILTER ( ?o < ?b ) . { SELECT DISTINCT ( COUNT ( ?x ) AS ?b ) WHERE { ?x property:basionym resource:Atriplex_conduplicata . ?x rdf:type ontology:taxon } } }
[]
name taxon
Q15629400 Q12954907 Q22915049
SYSTEM
Dimorphotheca ecklonis, Polygonum bistorta, Polianthes michoacana
Q12954907 Q22915049 Q7226458 Q159107 Q157851 Q15250904 Q16484730 Q7170299 Q11099680 Q15629400 Q134609
(c(Q16521),P566,c(Q82799))
action less
action find_reverse_tuple_counts
relation P566
type Q82799
type Q16521
action count
action filter_type
action find_reverse
entity Q21251956
relation P566
type Q16521
[ANSWERS] are a basionyms of less number of taxons than Atriplex conduplicata
[{'concept': 'Q16521'}, 'P566', {'concept': 'Q82799'}]
SELECT DISTINCT ?z WHERE { { SELECT DISTINCT ?z ( COUNT ( ?e ) AS ?o ) WHERE { ?e property:P566 ?z . ?z rdf:type ontology:Q82799 . ?e rdf:type ontology:Q16521 } GROUP BY ?z } . FILTER ( ?o < ?b ) . { SELECT DISTINCT ( COUNT ( ?x ) AS ?b ) WHERE { ?x property:P566 resource:Q21251956 . ?x rdf:type ontology:Q16521 } } }
Polygonum bistorta Polianthes michoacana Polygonum cespitosum Hieracium aurantiacum Glaux maritima Polygonum manshuriense Abutilon striatum Persicaria affinis Polygonum perfoliatum Dimorphotheca ecklonis Cynara scolymus
Dimorphotheca ecklonis, Polygonum bistorta and Polianthes michoacana are a basionyms of less number of taxons than Atriplex conduplicata
Dimorphotheca ecklonis Polygonum bistorta Polianthes michoacana
action less
action find_reverse_tuple_counts
relation basionym
type name
type taxon
action count
action filter_type
action find_reverse
entity Atriplex conduplicata
relation basionym
type taxon
[{'concept': 'taxon'}, 'basionym', {'concept': 'name'}]
SELECT DISTINCT ?z WHERE { { SELECT DISTINCT ?z ( COUNT ( ?e ) AS ?o ) WHERE { ?e property:basionym ?z . ?z rdf:type ontology:name . ?e rdf:type ontology:taxon } GROUP BY ?z } . FILTER ( ?o < ?b ) . { SELECT DISTINCT ( COUNT ( ?x ) AS ?b ) WHERE { ?x property:basionym resource:Atriplex_conduplicata . ?x rdf:type ontology:taxon } } }
[]
Logical Reasoning (All)
Logical|Intersection|Multiple_Relation
Q83310 Q21494532
P703 P688
Q863908
USER
Which nucleic acid sequences encode Serine/threonine-protein kinase haspin and are found in the taxon Mus musculus ?
AND((c(Q863908),P688,Q21494532), (c(Q863908),P703,Q83310))
action filter_type
action intersection
action find_reverse
entity Q21494532
relation P688
action find_reverse
entity Q83310
relation P703
type Q863908
{'AND': [[{'concept': 'Q863908'}, 'P688', 'Q21494532'], [{'concept': 'Q863908'}, 'P703', 'Q83310']]}
SELECT DISTINCT ?e WHERE { ?e property:P688 resource:Q21494532 . ?e property:P703 resource:Q83310 . ?e rdf:type ontology:Q863908 }
Mus musculus Serine/threonine-protein kinase haspin
action filter_type
action intersection
action find_reverse
entity Serine/threonine-protein kinase haspin
relation encodes
action find_reverse
entity Mus musculus
relation found in taxon
type nucleic acid sequence
{'AND': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'Serine/threonine-protein kinase haspin'], [{'concept': 'nucleic acid sequence'}, 'found in taxon', 'Mus musculus']]}
SELECT DISTINCT ?e WHERE { ?e property:encodes resource:Serine/threonine-protein_kinase_haspin . ?e property:found_in_taxon resource:Mus_musculus . ?e rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18250990
SYSTEM
Gsg2
Q18250990
AND((c(Q863908),P688,Q21494532), (c(Q863908),P703,Q83310))
action filter_type
action intersection
action find_reverse
entity Q21494532
relation P688
action find_reverse
entity Q83310
relation P703
type Q863908
[ANSWER] encode Serine/threonine-protein kinase haspin and are found in the taxon Mus musculus
{'AND': [[{'concept': 'Q863908'}, 'P688', 'Q21494532'], [{'concept': 'Q863908'}, 'P703', 'Q83310']]}
SELECT DISTINCT ?e WHERE { ?e property:P688 resource:Q21494532 . ?e property:P703 resource:Q83310 . ?e rdf:type ontology:Q863908 }
Gsg2
Gsg2 encode Serine/threonine-protein kinase haspin and are found in the taxon Mus musculus
Gsg2
action filter_type
action intersection
action find_reverse
entity Serine/threonine-protein kinase haspin
relation encodes
action find_reverse
entity Mus musculus
relation found in taxon
type nucleic acid sequence
{'AND': [[{'concept': 'nucleic acid sequence'}, 'encodes', 'Serine/threonine-protein kinase haspin'], [{'concept': 'nucleic acid sequence'}, 'found in taxon', 'Mus musculus']]}
SELECT DISTINCT ?e WHERE { ?e property:encodes resource:Serine/threonine-protein_kinase_haspin . ?e property:found_in_taxon resource:Mus_musculus . ?e rdf:type ontology:nucleic_acid_sequence }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q22263495 Q18047330
P702
Q181394
USER
Which nutrients are encoded by GSG2 or ubiquinone/menaquinone biosynthesis methyltransferase    NGO0321 ?
OR((c(Q181394),P702,Q18047330), (c(Q181394),P702,Q22263495))
action filter_type
action union
action find_reverse
entity Q18047330
relation P702
action find_reverse
entity Q22263495
relation P702
type Q181394
{'OR': [[{'concept': 'Q181394'}, 'P702', 'Q18047330'], [{'concept': 'Q181394'}, 'P702', 'Q22263495']]}
SELECT DISTINCT ?q WHERE { { { ?q property:P702 resource:Q18047330 } UNION { ?q property:P702 resource:Q22263495 } } . ?q rdf:type ontology:Q181394 }
ubiquinone/menaquinone biosynthesis methyltransferase    NGO0321 GSG2
action filter_type
action union
action find_reverse
entity GSG2
relation encoded by
action find_reverse
entity ubiquinone/menaquinone biosynthesis methyltransferase    NGO0321
relation encoded by
type nutrient
{'OR': [[{'concept': 'nutrient'}, 'encoded by', 'GSG2'], [{'concept': 'nutrient'}, 'encoded by', 'ubiquinone/menaquinone biosynthesis methyltransferase    NGO0321']]}
SELECT DISTINCT ?q WHERE { { { ?q property:encoded_by resource:GSG2 } UNION { ?q property:encoded_by resource:ubiquinone/menaquinone_biosynthesis_methyltransferase____NGO0321 } } . ?q rdf:type ontology:nutrient }
[]
nutrient
Q21103328 Q27794690
SYSTEM
Serine/threonine-protein kinase haspin, ubiquinone/menaquinone biosynthesis methyltransferase    NGO0321
Q21103328 Q27794690
OR((c(Q181394),P702,Q18047330), (c(Q181394),P702,Q22263495))
action filter_type
action union
action find_reverse
entity Q18047330
relation P702
action find_reverse
entity Q22263495
relation P702
type Q181394
[ANSWERS]
{'OR': [[{'concept': 'Q181394'}, 'P702', 'Q18047330'], [{'concept': 'Q181394'}, 'P702', 'Q22263495']]}
SELECT DISTINCT ?q WHERE { { { ?q property:P702 resource:Q18047330 } UNION { ?q property:P702 resource:Q22263495 } } . ?q rdf:type ontology:Q181394 }
Serine/threonine-protein kinase haspin ubiquinone/menaquinone biosynthesis methyltransferase    NGO0321
Serine/threonine-protein kinase haspin and ubiquinone/menaquinone biosynthesis methyltransferase NGO0321 are encoded by GSG2 or ubiquinone/menaquinone biosynthesis methyltransferase NGO0321
Serine/threonine-protein kinase haspin ubiquinone/menaquinone biosynthesis methyltransferase    NGO0321
action filter_type
action union
action find_reverse
entity GSG2
relation encoded by
action find_reverse
entity ubiquinone/menaquinone biosynthesis methyltransferase    NGO0321
relation encoded by
type nutrient
{'OR': [[{'concept': 'nutrient'}, 'encoded by', 'GSG2'], [{'concept': 'nutrient'}, 'encoded by', 'ubiquinone/menaquinone biosynthesis methyltransferase    NGO0321']]}
SELECT DISTINCT ?q WHERE { { { ?q property:encoded_by resource:GSG2 } UNION { ?q property:encoded_by resource:ubiquinone/menaquinone_biosynthesis_methyltransferase____NGO0321 } } . ?q rdf:type ontology:nutrient }
[]