Simple Question (Direct)
Simple Question
Q21987669
P682
Q1057
USER
Which metabolic process is Acyl-protein thioesterase 2 involved in ?
(Q21987669,P682,c(Q1057))
action filter_type
action find
entity Q21987669
relation P682
type Q1057
['Q21987669', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?h WHERE { ?h rdf:type ontology:Q1057 . resource:Q21987669 property:P682 ?h }
Acyl-protein thioesterase 2
action filter_type
action find
entity Acyl-protein thioesterase 2
relation biological process
type metabolic process
['Acyl-protein thioesterase 2', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?h WHERE { ?h rdf:type ontology:metabolic_process . resource:Acyl-protein_thioesterase_2 property:biological_process ?h }
[]
metabolic process
Q14349667
SYSTEM
lipid metabolic process
Q14349667
(Q21987669,P682,c(Q1057))
action filter_type
action find
entity Q21987669
relation P682
type Q1057
The [ANSWER] is Acyl-protein thioesterase 2 involved in
['Q21987669', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?h WHERE { ?h rdf:type ontology:Q1057 . resource:Q21987669 property:P682 ?h }
lipid metabolic process
The lipid metabolic process is Acyl-protein thioesterase 2 involved in
lipid metabolic process
action filter_type
action find
entity Acyl-protein thioesterase 2
relation biological process
type metabolic process
['Acyl-protein thioesterase 2', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?h WHERE { ?h rdf:type ontology:metabolic_process . resource:Acyl-protein_thioesterase_2 property:biological_process ?h }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21987669
P688
Q863908
USER
What is the nucleic acid sequence that is encoded by Acyl-protein thioesterase 2 ?
(c(Q863908),P688,Q21987669)
action filter_type
action find_reverse
entity Q21987669
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q21987669']
SELECT DISTINCT ?k WHERE { ?k rdf:type ontology:Q863908 . ?k property:P688 resource:Q21987669 }
Acyl-protein thioesterase 2
action filter_type
action find_reverse
entity Acyl-protein thioesterase 2
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Acyl-protein thioesterase 2']
SELECT DISTINCT ?k WHERE { ?k rdf:type ontology:nucleic_acid_sequence . ?k property:encodes resource:Acyl-protein_thioesterase_2 }
[]
nucleic acid sequence
Q18255732
SYSTEM
Lypla2
Q18255732
(c(Q863908),P688,Q21987669)
action filter_type
action find_reverse
entity Q21987669
relation P688
type Q863908
The nucleic acid sequence that is encoded by Acyl-protein thioesterase 2 is [ANSWER]
[{'concept': 'Q863908'}, 'P688', 'Q21987669']
SELECT DISTINCT ?k WHERE { ?k rdf:type ontology:Q863908 . ?k property:P688 resource:Q21987669 }
Lypla2
The nucleic acid sequence that is encoded by Acyl-protein thioesterase 2 is Lypla2
Lypla2
action filter_type
action find_reverse
entity Acyl-protein thioesterase 2
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Acyl-protein thioesterase 2']
SELECT DISTINCT ?k WHERE { ?k rdf:type ontology:nucleic_acid_sequence . ?k property:encodes resource:Acyl-protein_thioesterase_2 }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18255732
P684
Q863908
USER
Which nucleic acid sequence is an orthologous gene for that one ?
(Q18255732,P684,c(Q863908))
action filter_type
action find
entity Q18255732
relation P684
type Q863908
['Q18255732', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?a WHERE { ?a rdf:type ontology:Q863908 . resource:Q18255732 property:P684 ?a }
Lypla2
action filter_type
action find
entity Lypla2
relation ortholog
type nucleic acid sequence
['Lypla2', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?a WHERE { ?a rdf:type ontology:nucleic_acid_sequence . resource:Lypla2 property:ortholog ?a }
[]
nucleic acid sequence
Q18036462
SYSTEM
LYPLA2
Q18036462
(Q18255732,P684,c(Q863908))
action filter_type
action find
entity Q18255732
relation P684
type Q863908
[ANSWER] is an orthologous gene for that one
['Q18255732', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?a WHERE { ?a rdf:type ontology:Q863908 . resource:Q18255732 property:P684 ?a }
LYPLA2
LYPLA2 is an orthologous gene for that one
LYPLA2
action filter_type
action find
entity Lypla2
relation ortholog
type nucleic acid sequence
['Lypla2', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?a WHERE { ?a rdf:type ontology:nucleic_acid_sequence . resource:Lypla2 property:ortholog ?a }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q18047558
Q863908
USER
And what about BRMS1L?
(Q18047558,P684,c(Q863908))
action filter_type
action find
entity Q18047558
relation P684
type Q863908
['Q18047558', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?l WHERE { ?l rdf:type ontology:Q863908 . resource:Q18047558 property:P684 ?l }
BRMS1L
action filter_type
action find
entity BRMS1L
relation ortholog
type nucleic acid sequence
['BRMS1L', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?l WHERE { ?l rdf:type ontology:nucleic_acid_sequence . resource:BRMS1L property:ortholog ?l }
[]
nucleic acid sequence
Q18257393
SYSTEM
Brms1l
Q18257393
(Q18047558,P684,c(Q863908))
action filter_type
action find
entity Q18047558
relation P684
type Q863908
[ANSWER]
['Q18047558', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?l WHERE { ?l rdf:type ontology:Q863908 . resource:Q18047558 property:P684 ?l }
Brms1l
Brms1l
action filter_type
action find
entity BRMS1L
relation ortholog
type nucleic acid sequence
['BRMS1L', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?l WHERE { ?l rdf:type ontology:nucleic_acid_sequence . resource:BRMS1L property:ortholog ?l }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, subject is indirect
Q18257393 Q23457463
P688
Q181394
USER
Is that nucleic acid sequence an encoding of GTPase ObgE    BT_4388 ?
(Q18257393,P688,Q23457463)
action is_in
entity Q23457463
action find
entity Q18257393
relation P688
['Q18257393', 'P688', 'Q23457463']
ASK WHERE { resource:Q18257393 property:P688 resource:Q23457463 }
Brms1l GTPase ObgE    BT_4388
action is_in
entity GTPase ObgE    BT_4388
action find
entity Brms1l
relation encodes
['Brms1l', 'encodes', 'GTPase ObgE    BT_4388']
ASK WHERE { resource:Brms1l property:encodes resource:GTPase_ObgE____BT_4388 }
[]
nutrient
SYSTEM
NO
(Q18257393,P688,Q23457463)
action is_in
entity Q23457463
action find
entity Q18257393
relation P688
[ANSWER]
['Q18257393', 'P688', 'Q23457463']
ASK WHERE { resource:Q18257393 property:P688 resource:Q23457463 }
No
action is_in
entity GTPase ObgE    BT_4388
action find
entity Brms1l
relation encodes
['Brms1l', 'encodes', 'GTPase ObgE    BT_4388']
ASK WHERE { resource:Brms1l property:encodes resource:GTPase_ObgE____BT_4388 }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Mult. entity type
Q18036462 Q9141217
P684
Q863908
USER
How many nucleic acid sequences are LYPLA2 or FDX1 an orthlogous gene of ?
(c(Q863908),P684,Q18036462) (c(Q863908),P684,Q9141217)
action count
action union
action filter_type
action find_reverse
entity Q18036462
relation P684
type Q863908
action filter_type
action find_reverse
entity Q9141217
relation P684
type Q863908
[{'concept': 'Q863908'}, 'P684', 'Q18036462'] [{'concept': 'Q863908'}, 'P684', 'Q9141217']
SELECT DISTINCT ( COUNT ( ?b ) AS ?t ) WHERE { { ?b property:P684 resource:Q9141217 . ?b rdf:type ontology:Q863908 } UNION { ?b property:P684 resource:Q18036462 . ?b rdf:type ontology:Q863908 } }
LYPLA2 FDX1
action count
action union
action filter_type
action find_reverse
entity LYPLA2
relation ortholog
type nucleic acid sequence
action filter_type
action find_reverse
entity FDX1
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'LYPLA2'] [{'concept': 'nucleic acid sequence'}, 'ortholog', 'FDX1']
SELECT DISTINCT ( COUNT ( ?b ) AS ?t ) WHERE { { ?b property:ortholog resource:FDX1 . ?b rdf:type ontology:nucleic_acid_sequence } UNION { ?b property:ortholog resource:LYPLA2 . ?b rdf:type ontology:nucleic_acid_sequence } }
[]
nucleic acid sequence
SYSTEM
2
Q18255732 Q18250550
(c(Q863908),P684,Q18036462) (c(Q863908),P684,Q9141217)
action count
action union
action filter_type
action find_reverse
entity Q18036462
relation P684
type Q863908
action filter_type
action find_reverse
entity Q9141217
relation P684
type Q863908
[ANSWER]
[{'concept': 'Q863908'}, 'P684', 'Q18036462'] [{'concept': 'Q863908'}, 'P684', 'Q9141217']
SELECT DISTINCT ( COUNT ( ?b ) AS ?t ) WHERE { { ?b property:P684 resource:Q9141217 . ?b rdf:type ontology:Q863908 } UNION { ?b property:P684 resource:Q18036462 . ?b rdf:type ontology:Q863908 } }
Lypla2 Fdx1
2
action count
action union
action filter_type
action find_reverse
entity LYPLA2
relation ortholog
type nucleic acid sequence
action filter_type
action find_reverse
entity FDX1
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'LYPLA2'] [{'concept': 'nucleic acid sequence'}, 'ortholog', 'FDX1']
SELECT DISTINCT ( COUNT ( ?b ) AS ?t ) WHERE { { ?b property:ortholog resource:FDX1 . ?b rdf:type ontology:nucleic_acid_sequence } UNION { ?b property:ortholog resource:LYPLA2 . ?b rdf:type ontology:nucleic_acid_sequence } }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q18257393
P702
Q181394
USER
Which nutrient is encoded by Brms1l ?
(c(Q181394),P702,Q18257393)
action filter_type
action find_reverse
entity Q18257393
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q18257393']
SELECT DISTINCT ?t WHERE { ?t property:P702 resource:Q18257393 . ?t rdf:type ontology:Q181394 }
Brms1l
action filter_type
action find_reverse
entity Brms1l
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'Brms1l']
SELECT DISTINCT ?t WHERE { ?t property:encoded_by resource:Brms1l . ?t rdf:type ontology:nutrient }
[]
nutrient
Q21495455
SYSTEM
Breast cancer metastasis-suppressor 1-like protein
Q21495455
(c(Q181394),P702,Q18257393)
action filter_type
action find_reverse
entity Q18257393
relation P702
type Q181394
[ANSWER] is encoded by Brms1l
[{'concept': 'Q181394'}, 'P702', 'Q18257393']
SELECT DISTINCT ?t WHERE { ?t property:P702 resource:Q18257393 . ?t rdf:type ontology:Q181394 }
Breast cancer metastasis-suppressor 1-like protein
Breast cancer metastasis-suppressor 1-like protein is encoded by Brms1l
Breast cancer metastasis-suppressor 1-like protein
action filter_type
action find_reverse
entity Brms1l
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'Brms1l']
SELECT DISTINCT ?t WHERE { ?t property:encoded_by resource:Brms1l . ?t rdf:type ontology:nutrient }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21495455
P681
Q15989253
USER
Which is the cell component of that nutrient ?
(Q21495455,P681,c(Q15989253))
action filter_type
action find
entity Q21495455
relation P681
type Q15989253
['Q21495455', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?h WHERE { resource:Q21495455 property:P681 ?h . ?h rdf:type ontology:Q15989253 }
Breast cancer metastasis-suppressor 1-like protein
action filter_type
action find
entity Breast cancer metastasis-suppressor 1-like protein
relation cell component
type part
['Breast cancer metastasis-suppressor 1-like protein', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?h WHERE { resource:Breast_cancer_metastasis-suppressor_1-like_protein property:cell_component ?h . ?h rdf:type ontology:part }
[]
part
Q40260
SYSTEM
nucleus
Q40260
(Q21495455,P681,c(Q15989253))
action filter_type
action find
entity Q21495455
relation P681
type Q15989253
The [ANSWER] is the cell component of that nutrient
['Q21495455', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?h WHERE { resource:Q21495455 property:P681 ?h . ?h rdf:type ontology:Q15989253 }
nucleus
The nucleus is the cell component of that nutrient
nucleus
action filter_type
action find
entity Breast cancer metastasis-suppressor 1-like protein
relation cell component
type part
['Breast cancer metastasis-suppressor 1-like protein', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?h WHERE { resource:Breast_cancer_metastasis-suppressor_1-like_protein property:cell_component ?h . ?h rdf:type ontology:part }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Single entity type
Q3844422
P180
Q15989253 Q3516658
USER
How many heraldic symbols express approximately the same number of parts as almond tree ?
(c(Q3516658),P180,c(Q15989253))
action count
action approx
action find_tuple_counts
relation P180
type Q3516658
type Q15989253
action count
action filter_type
action find
entity Q3844422
relation P180
type Q3516658
[{'concept': 'Q3516658'}, 'P180', {'concept': 'Q15989253'}]
SELECT DISTINCT ( COUNT ( ?p ) AS ?j ) WHERE { { SELECT DISTINCT ( COUNT ( ?y ) AS ?m ) WHERE { resource:Q3844422 property:P180 ?y . ?y rdf:type ontology:Q3516658 } } . FILTER ( ?f = ?m ) . { SELECT DISTINCT ?p ( COUNT ( ?r ) AS ?f ) WHERE { ?p property:P180 ?r . ?p rdf:type ontology:Q3516658 . ?r rdf:type ontology:Q15989253 } GROUP BY ?p } }
almond tree
action count
action approx
action find_tuple_counts
relation depicts
type heraldic symbol
type part
action count
action filter_type
action find
entity almond tree
relation depicts
type heraldic symbol
[{'concept': 'heraldic symbol'}, 'depicts', {'concept': 'part'}]
SELECT DISTINCT ( COUNT ( ?p ) AS ?j ) WHERE { { SELECT DISTINCT ( COUNT ( ?y ) AS ?m ) WHERE { resource:almond_tree property:depicts ?y . ?y rdf:type ontology:heraldic_symbol } } . FILTER ( ?f = ?m ) . { SELECT DISTINCT ?p ( COUNT ( ?r ) AS ?f ) WHERE { ?p property:depicts ?r . ?p rdf:type ontology:heraldic_symbol . ?r rdf:type ontology:part } GROUP BY ?p } }
[]
part heraldic symbol
SYSTEM
77
Q3631010 Q949516 Q3743219 Q1531829 Q3972936 Q3685083 Q3967285 Q3657778 Q3846728 Q3860189 Q3908677 Q3844422 Q3621125 Q3738545 Q3630953 Q3978297 Q25409362 Q997698 Q3898919 Q3715134 Q3696963 Q3882779 Q3859462 Q3840866 Q4009696 Q3759316 Q1574285 Q3539700 Q676215 Q1533358 Q2137363 Q989540 Q3954964 Q3877676 Q1634010 Q27347239 Q3607618 Q3849985 Q1258214 Q2963691 Q3950303 Q2135212 Q27625064 Q2226240 Q3608001 Q3700771 Q3995120 Q3643394 Q1493940 Q1070435 Q1031296 Q3900720 Q3993705 Q3621132 Q3411703 Q1341768 Q3855073 Q3925764 Q3749232 Q27347287 Q1382857 Q2379167 Q3143703 Q3765054 Q3930188 Q3801980 Q27192577 Q3693964 Q3853255 Q15825380 Q3757590 Q3778797 Q14906602 Q15851470 Q3998613 Q3747919 Q458448
(c(Q3516658),P180,c(Q15989253))
action count
action approx
action find_tuple_counts
relation P180
type Q3516658
type Q15989253
action count
action filter_type
action find
entity Q3844422
relation P180
type Q3516658
[ANSWER]
[{'concept': 'Q3516658'}, 'P180', {'concept': 'Q15989253'}]
SELECT DISTINCT ( COUNT ( ?p ) AS ?j ) WHERE { { SELECT DISTINCT ( COUNT ( ?y ) AS ?m ) WHERE { resource:Q3844422 property:P180 ?y . ?y rdf:type ontology:Q3516658 } } . FILTER ( ?f = ?m ) . { SELECT DISTINCT ?p ( COUNT ( ?r ) AS ?f ) WHERE { ?p property:P180 ?r . ?p rdf:type ontology:Q3516658 . ?r rdf:type ontology:Q15989253 } GROUP BY ?p } }
hazelnut globus cruciger millrind bell morning star compass spur Jewish hat sea millstone gate almond tree columbine scythe forearm plum tree Geryon book pilgrim viking ship kremlin alder mitre hop weather vane mulberry hand Triton arm harpy rainbow saw wild man Gordian knot horseshoe crozier halberd hammer trident Chimera portcullis rake chapel saddle Dracaena draco die tower left arm garb cherubim mermaid peach tree torch Boreas pegasus angel Mercury chape strawberry lance sword pillar Hydra yoke turnip iris beehive crown of thorns mace Saint Lawrence galley warrior acorn open triangle caltrap scissors anvil
77
action count
action approx
action find_tuple_counts
relation depicts
type heraldic symbol
type part
action count
action filter_type
action find
entity almond tree
relation depicts
type heraldic symbol
[{'concept': 'heraldic symbol'}, 'depicts', {'concept': 'part'}]
SELECT DISTINCT ( COUNT ( ?p ) AS ?j ) WHERE { { SELECT DISTINCT ( COUNT ( ?y ) AS ?m ) WHERE { resource:almond_tree property:depicts ?y . ?y rdf:type ontology:heraldic_symbol } } . FILTER ( ?f = ?m ) . { SELECT DISTINCT ?p ( COUNT ( ?r ) AS ?f ) WHERE { ?p property:depicts ?r . ?p rdf:type ontology:heraldic_symbol . ?r rdf:type ontology:part } GROUP BY ?p } }
[]
Quantitative Reasoning (All)
Quantitative|Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q79529 Q8386 Q181394
USER
Which nutrients interacts with exactly 25 chemical substances and drugs ?
(c(Q181394),P129,c(Q79529)|c(Q8386))
action equal
action union
action find_tuple_counts
relation P129
type Q181394
type Q79529
action find_tuple_counts
relation P129
type Q181394
type Q8386
value 25
[{'concept': 'Q181394'}, 'P129', [{'concept': 'Q79529'}, {'concept': 'Q8386'}]]
SELECT DISTINCT ?n WHERE { { SELECT DISTINCT ( COUNT ( ?w ) AS ?j ) ?n WHERE { VALUES ( ?k ) { ( ontology:Q79529 ) ( ontology:Q8386 ) } . ?w rdf:type ?k } GROUP BY ?n } . FILTER ( ?j = 25 ) }
action equal
action union
action find_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
action find_tuple_counts
relation physically interacts with
type nutrient
type drug
value 25
[{'concept': 'nutrient'}, 'physically interacts with', [{'concept': 'chemical substance'}, {'concept': 'drug'}]]
SELECT DISTINCT ?n WHERE { { SELECT DISTINCT ( COUNT ( ?w ) AS ?j ) ?n WHERE { VALUES ( ?k ) { ( ontology:chemical_substance ) ( ontology:drug ) } . ?w rdf:type ?k } GROUP BY ?n } . FILTER ( ?j = 25 ) }
[]
chemical substance drug nutrient
Q4734887
SYSTEM
Alpha-1D adrenergic receptor
Q4734887
(c(Q181394),P129,c(Q79529)|c(Q8386))
action equal
action union
action find_tuple_counts
relation P129
type Q181394
type Q79529
action find_tuple_counts
relation P129
type Q181394
type Q8386
value 25
[ANSWER] interacts with exactly 25 chemical substances and drugs
[{'concept': 'Q181394'}, 'P129', [{'concept': 'Q79529'}, {'concept': 'Q8386'}]]
SELECT DISTINCT ?n WHERE { { SELECT DISTINCT ( COUNT ( ?w ) AS ?j ) ?n WHERE { VALUES ( ?k ) { ( ontology:Q79529 ) ( ontology:Q8386 ) } . ?w rdf:type ?k } GROUP BY ?n } . FILTER ( ?j = 25 ) }
Alpha-1D adrenergic receptor
Alpha-1D adrenergic receptor interacts with exactly 25 chemical substances and drugs
Alpha-1D adrenergic receptor
action equal
action union
action find_tuple_counts
relation physically interacts with
type nutrient
type chemical substance
action find_tuple_counts
relation physically interacts with
type nutrient
type drug
value 25
[{'concept': 'nutrient'}, 'physically interacts with', [{'concept': 'chemical substance'}, {'concept': 'drug'}]]
SELECT DISTINCT ?n WHERE { { SELECT DISTINCT ( COUNT ( ?w ) AS ?j ) ?n WHERE { VALUES ( ?k ) { ( ontology:chemical_substance ) ( ontology:drug ) } . ?w rdf:type ?k } GROUP BY ?n } . FILTER ( ?j = 25 ) }
[]