Simple Question (Direct)
Simple Question
Q21989627
P703
Q16521
USER
Which taxon is Tubulin alpha-4A chain found in ?
(Q21989627,P703,c(Q16521))
action filter_type
action find
entity Q21989627
relation P703
type Q16521
['Q21989627', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?t WHERE { ?t rdf:type ontology:Q16521 . resource:Q21989627 property:P703 ?t }
Tubulin alpha-4A chain
action filter_type
action find
entity Tubulin alpha-4A chain
relation found in taxon
type taxon
['Tubulin alpha-4A chain', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?t WHERE { ?t rdf:type ontology:taxon . resource:Tubulin_alpha-4A_chain property:found_in_taxon ?t }
[]
taxon
Q83310
SYSTEM
Mus musculus
Q83310
(Q21989627,P703,c(Q16521))
action filter_type
action find
entity Q21989627
relation P703
type Q16521
Tubulin alpha-4A chain is found in [ANSWER]
['Q21989627', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?t WHERE { ?t rdf:type ontology:Q16521 . resource:Q21989627 property:P703 ?t }
Mus musculus
Tubulin alpha-4A chain is found in Mus musculus
Mus musculus
action filter_type
action find
entity Tubulin alpha-4A chain
relation found in taxon
type taxon
['Tubulin alpha-4A chain', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?t WHERE { ?t rdf:type ontology:taxon . resource:Tubulin_alpha-4A_chain property:found_in_taxon ?t }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21989627
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(c(Q863908),P688,Q83310)
action filter_type
action find_reverse
entity Q21989627
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q83310']
SELECT DISTINCT ?w WHERE { ?w property:P688 resource:Q21989627 . ?w rdf:type ontology:Q863908 }
Tubulin alpha-4A chain
action filter_type
action find_reverse
entity Tubulin alpha-4A chain
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Mus musculus']
SELECT DISTINCT ?w WHERE { ?w property:encodes resource:Tubulin_alpha-4A_chain . ?w rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18255177
SYSTEM
Tuba4a
Q18255177
(c(Q863908),P688,Q83310)
action filter_type
action find_reverse
entity Q21989627
relation P688
type Q863908
[ANSWER] encodes that nutrient
[{'concept': 'Q863908'}, 'P688', 'Q83310']
SELECT DISTINCT ?w WHERE { ?w property:P688 resource:Q21989627 . ?w rdf:type ontology:Q863908 }
Tuba4a
Tuba4a encodes that nutrient
Tuba4a
action filter_type
action find_reverse
entity Tubulin alpha-4A chain
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Mus musculus']
SELECT DISTINCT ?w WHERE { ?w property:encodes resource:Tubulin_alpha-4A_chain . ?w rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|3 entities, 2 direct, 2(direct) are query entities, subject is indirect
Q18255177 Q24590793 Q18032223
P684
Q863908
USER
Does that nucleic acid sequence have EFCAB6 and TUBA4A as its orthologous gene ?
(Q18255177,P684,Q24590793) (Q18255177,P684,Q18032223)
action is_in
entity Q18255177
action intersection
action find_reverse
entity Q24590793
relation P684
action find_reverse
entity Q18032223
relation P684
['Q18255177', 'P684', 'Q24590793'] ['Q18255177', 'P684', 'Q18032223']
ASK WHERE { resource:Q18255177 property:P684 resource:Q24590793 . resource:Q18255177 property:P684 resource:Q18032223 }
Tuba4a EFCAB6 TUBA4A
action is_in
entity Tuba4a
action intersection
action find_reverse
entity EFCAB6
relation ortholog
action find_reverse
entity TUBA4A
relation ortholog
['Tuba4a', 'ortholog', 'EFCAB6'] ['Tuba4a', 'ortholog', 'TUBA4A']
ASK WHERE { resource:Tuba4a property:ortholog resource:EFCAB6 . resource:Tuba4a property:ortholog resource:TUBA4A }
[]
nucleic acid sequence
SYSTEM
NO and YES respectively
(Q18255177,P684,Q24590793) (Q18255177,P684,Q18032223)
action is_in
entity Q18255177
action intersection
action find_reverse
entity Q24590793
relation P684
action find_reverse
entity Q18032223
relation P684
[ANSWER]
['Q18255177', 'P684', 'Q24590793'] ['Q18255177', 'P684', 'Q18032223']
ASK WHERE { resource:Q18255177 property:P684 resource:Q24590793 . resource:Q18255177 property:P684 resource:Q18032223 }
NO and YES respectively
action is_in
entity Tuba4a
action intersection
action find_reverse
entity EFCAB6
relation ortholog
action find_reverse
entity TUBA4A
relation ortholog
['Tuba4a', 'ortholog', 'EFCAB6'] ['Tuba4a', 'ortholog', 'TUBA4A']
ASK WHERE { resource:Tuba4a property:ortholog resource:EFCAB6 . resource:Tuba4a property:ortholog resource:TUBA4A }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type
Q18255177
P688
Q181394
USER
How many nutrients do Tuba4a encode ?
(Q18255177,P688,c(Q181394))
action count
action filter_type
action find
entity Q18255177
relation P688
type Q181394
['Q18255177', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?e ) AS ?n ) WHERE { resource:Q18255177 property:P688 ?e . ?e rdf:type ontology:Q181394 }
Tuba4a
action count
action filter_type
action find
entity Tuba4a
relation encodes
type nutrient
['Tuba4a', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?e ) AS ?n ) WHERE { resource:Tuba4a property:encodes ?e . ?e rdf:type ontology:nutrient }
[]
nutrient
SYSTEM
1
Q21989627
(Q18255177,P688,c(Q181394))
action count
action filter_type
action find
entity Q18255177
relation P688
type Q181394
[ANSWER]
['Q18255177', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?e ) AS ?n ) WHERE { resource:Q18255177 property:P688 ?e . ?e rdf:type ontology:Q181394 }
Tubulin alpha-4A chain
1
action count
action filter_type
action find
entity Tuba4a
relation encodes
type nutrient
['Tuba4a', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?e ) AS ?n ) WHERE { resource:Tuba4a property:encodes ?e . ?e rdf:type ontology:nutrient }
[]
Quantitative Reasoning (Count) (All)
Incomplete count-based ques
Q18262248
Q181394
USER
And also tell me about Higd2a?
(Q18262248,P688,c(Q181394))
action count
action filter_type
action find
entity Q18262248
relation P688
type Q181394
['Q18262248', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?u ) AS ?g ) WHERE { resource:Q18262248 property:P688 ?u . ?u rdf:type ontology:Q181394 }
Higd2a
action count
action filter_type
action find
entity Higd2a
relation encodes
type nutrient
['Higd2a', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?u ) AS ?g ) WHERE { resource:Higd2a property:encodes ?u . ?u rdf:type ontology:nutrient }
[]
nutrient
SYSTEM
1
(Q18262248,P688,c(Q181394))
action count
action filter_type
action find
entity Q18262248
relation P688
type Q181394
[ANSWER]
['Q18262248', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?u ) AS ?g ) WHERE { resource:Q18262248 property:P688 ?u . ?u rdf:type ontology:Q181394 }
1
action count
action filter_type
action find
entity Higd2a
relation encodes
type nutrient
['Higd2a', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?u ) AS ?g ) WHERE { resource:Higd2a property:encodes ?u . ?u rdf:type ontology:nutrient }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q22982189 Q18255177
P688
Q181394
USER
Which nutrients are encoded by Tuba4a or B12-dependent methionine synthase    PA1843 ?
OR((Q18255177,P688,c(Q181394)), (Q22982189,P688,c(Q181394)))
action filter_type
action union
action find
entity Q18255177
relation P688
action find
entity Q22982189
relation P688
type Q181394
{'OR': [['Q18255177', 'P688', {'concept': 'Q181394'}], ['Q22982189', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?e WHERE { { VALUES ( ?u ) { ( resource:Q18255177 ) ( resource:Q22982189 ) } . ?u property:P688 ?e } . ?e rdf:type ontology:Q181394 }
B12-dependent methionine synthase    PA1843 Tuba4a
action filter_type
action union
action find
entity Tuba4a
relation encodes
action find
entity B12-dependent methionine synthase    PA1843
relation encodes
type nutrient
{'OR': [['Tuba4a', 'encodes', {'concept': 'nutrient'}], ['B12-dependent methionine synthase    PA1843', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?e WHERE { { VALUES ( ?u ) { ( resource:Tuba4a ) ( resource:B12-dependent_methionine_synthase____PA1843 ) } . ?u property:encodes ?e } . ?e rdf:type ontology:nutrient }
[]
nutrient
Q22989504 Q21989627
SYSTEM
B12-dependent methionine synthase    PA1843, Tubulin alpha-4A chain
Q22989504 Q21989627
OR((Q18255177,P688,c(Q181394)), (Q22982189,P688,c(Q181394)))
action filter_type
action union
action find
entity Q18255177
relation P688
action find
entity Q22982189
relation P688
type Q181394
[ANSWERS]
{'OR': [['Q18255177', 'P688', {'concept': 'Q181394'}], ['Q22982189', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?e WHERE { { VALUES ( ?u ) { ( resource:Q18255177 ) ( resource:Q22982189 ) } . ?u property:P688 ?e } . ?e rdf:type ontology:Q181394 }
B12-dependent methionine synthase    PA1843 Tubulin alpha-4A chain
B12-dependent methionine synthase PA1843 and Tubulin alpha-4A chain are encoded by Tuba4a or B12-dependent methionine synthase PA1843
B12-dependent methionine synthase    PA1843 Tubulin alpha-4A chain
action filter_type
action union
action find
entity Tuba4a
relation encodes
action find
entity B12-dependent methionine synthase    PA1843
relation encodes
type nutrient
{'OR': [['Tuba4a', 'encodes', {'concept': 'nutrient'}], ['B12-dependent methionine synthase    PA1843', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?e WHERE { { VALUES ( ?u ) { ( resource:Tuba4a ) ( resource:B12-dependent_methionine_synthase____PA1843 ) } . ?u property:encodes ?e } . ?e rdf:type ontology:nutrient }
[]
Simple Question (Direct)
Simple Question|Mult. Entity|Indirect
Q22989504 Q21989627
P702
Q863908
USER
What are the gene that encodes B12-dependent methionine synthase    PA1843 and Tubulin alpha-4A chain ?
(Q22989504,P702,c(Q863908)) (Q21989627,P702,c(Q863908))
action union
action filter_type
action find
entity Q22989504
relation P702
type Q863908
action filter_type
action find
entity Q21989627
relation P702
type Q863908
['Q22989504', 'P702', {'concept': 'Q863908'}] ['Q21989627', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?l WHERE { { resource:Q22989504 property:P702 ?l . ?l rdf:type ontology:Q863908 } UNION { resource:Q21989627 property:P702 ?l . ?l rdf:type ontology:Q863908 } }
B12-dependent methionine synthase    PA1843 Tubulin alpha-4A chain
action union
action filter_type
action find
entity B12-dependent methionine synthase    PA1843
relation encoded by
type nucleic acid sequence
action filter_type
action find
entity Tubulin alpha-4A chain
relation encoded by
type nucleic acid sequence
['B12-dependent methionine synthase    PA1843', 'encoded by', {'concept': 'nucleic acid sequence'}] ['Tubulin alpha-4A chain', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?l WHERE { { resource:B12-dependent_methionine_synthase____PA1843 property:encoded_by ?l . ?l rdf:type ontology:nucleic_acid_sequence } UNION { resource:Tubulin_alpha-4A_chain property:encoded_by ?l . ?l rdf:type ontology:nucleic_acid_sequence } }
[]
nucleic acid sequence
Q22982189 Q18255177
SYSTEM
B12-dependent methionine synthase    PA1843, Tuba4a
Q22982189 Q18255177
(Q22989504,P702,c(Q863908)) (Q21989627,P702,c(Q863908))
action union
action filter_type
action find
entity Q22989504
relation P702
type Q863908
action filter_type
action find
entity Q21989627
relation P702
type Q863908
[ANSWERS]
['Q22989504', 'P702', {'concept': 'Q863908'}] ['Q21989627', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?l WHERE { { resource:Q22989504 property:P702 ?l . ?l rdf:type ontology:Q863908 } UNION { resource:Q21989627 property:P702 ?l . ?l rdf:type ontology:Q863908 } }
B12-dependent methionine synthase    PA1843 Tuba4a
The gene that encodes B 12-dependent methionine synthase PA 1843 and Tubulin alpha -4A chain are named B12-dependent methionine synthase PA1843 and Tuba4a
B12-dependent methionine synthase    PA1843 Tuba4a
action union
action filter_type
action find
entity B12-dependent methionine synthase    PA1843
relation encoded by
type nucleic acid sequence
action filter_type
action find
entity Tubulin alpha-4A chain
relation encoded by
type nucleic acid sequence
['B12-dependent methionine synthase    PA1843', 'encoded by', {'concept': 'nucleic acid sequence'}] ['Tubulin alpha-4A chain', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?l WHERE { { resource:B12-dependent_methionine_synthase____PA1843 property:encoded_by ?l . ?l rdf:type ontology:nucleic_acid_sequence } UNION { resource:Tubulin_alpha-4A_chain property:encoded_by ?l . ?l rdf:type ontology:nucleic_acid_sequence } }
[]
Simple Question (Coreferenced)
Simple Question|Mult. Entity
Q22982189 Q18255177
P688
Q181394
USER
What do those nucleic acid sequences encode ?
(Q22982189,P688,c(Q181394)) (Q18255177,P688,c(Q181394))
action filter_type
action find
entity prev_answer
relation P688
type Q181394
['Q22982189', 'P688', {'concept': 'Q181394'}] ['Q18255177', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?m WHERE { VALUES ( ?k ) { ( resource:Q22982189 ) ( resource:Q18255177 ) } . ?m rdf:type ontology:Q181394 . ?k property:P688 ?m }
B12-dependent methionine synthase    PA1843 Tuba4a
action filter_type
action find
entity prev_answer
relation encodes
type nutrient
['B12-dependent methionine synthase    PA1843', 'encodes', {'concept': 'nutrient'}] ['Tuba4a', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?m WHERE { VALUES ( ?k ) { ( resource:B12-dependent_methionine_synthase____PA1843 ) ( resource:Tuba4a ) } . ?m rdf:type ontology:nutrient . ?k property:encodes ?m }
[]
nutrient
Q22989504 Q21989627
SYSTEM
B12-dependent methionine synthase    PA1843, Tubulin alpha-4A chain
Q22989504 Q21989627
(Q22982189,P688,c(Q181394)) (Q18255177,P688,c(Q181394))
action filter_type
action find
entity prev_answer
relation P688
type Q181394
[ANSWERS]
['Q22982189', 'P688', {'concept': 'Q181394'}] ['Q18255177', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?m WHERE { VALUES ( ?k ) { ( resource:Q22982189 ) ( resource:Q18255177 ) } . ?m rdf:type ontology:Q181394 . ?k property:P688 ?m }
B12-dependent methionine synthase    PA1843 Tubulin alpha-4A chain
Those nucleic acid sequences encode the B12-dependent methionine synthase PA1843 and Tubulin alpha-4A chain
B12-dependent methionine synthase    PA1843 Tubulin alpha-4A chain
action filter_type
action find
entity prev_answer
relation encodes
type nutrient
['B12-dependent methionine synthase    PA1843', 'encodes', {'concept': 'nutrient'}] ['Tuba4a', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?m WHERE { VALUES ( ?k ) { ( resource:B12-dependent_methionine_synthase____PA1843 ) ( resource:Tuba4a ) } . ?m rdf:type ontology:nutrient . ?k property:encodes ?m }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q22989504
P680
Q44424
USER
Which chemical bond represents molecular function of B12-dependent methionine synthase    PA1843 ?
(Q22989504,P680,c(Q44424))
action filter_type
action find
entity Q22989504
relation P680
type Q44424
['Q22989504', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?r WHERE { resource:Q22989504 property:P680 ?r . ?r rdf:type ontology:Q44424 }
B12-dependent methionine synthase    PA1843
action filter_type
action find
entity B12-dependent methionine synthase    PA1843
relation molecular function
type chemical bond
['B12-dependent methionine synthase    PA1843', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?r WHERE { resource:B12-dependent_methionine_synthase____PA1843 property:molecular_function ?r . ?r rdf:type ontology:chemical_bond }
[]
chemical bond
Q14633865
SYSTEM
zinc ion binding
Q14633865
(Q22989504,P680,c(Q44424))
action filter_type
action find
entity Q22989504
relation P680
type Q44424
The [ANSWER] represents molecular function of B12-dependent methionine synthase PA1843
['Q22989504', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?r WHERE { resource:Q22989504 property:P680 ?r . ?r rdf:type ontology:Q44424 }
zinc ion binding
The zinc ion binding represents molecular function of B12-dependent methionine synthase PA1843
zinc ion binding
action filter_type
action find
entity B12-dependent methionine synthase    PA1843
relation molecular function
type chemical bond
['B12-dependent methionine synthase    PA1843', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?r WHERE { resource:B12-dependent_methionine_synthase____PA1843 property:molecular_function ?r . ?r rdf:type ontology:chemical_bond }
[]