Simple Question (Direct)
Simple Question
Q24227552
P681
Q15989253
USER
Which part is a component of phosphonates transport system permease    bll7945 ?
(Q24227552,P681,c(Q15989253))
action filter_type
action find
entity Q24227552
relation P681
type Q15989253
['Q24227552', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?q WHERE { resource:Q24227552 property:P681 ?q . ?q rdf:type ontology:Q15989253 }
phosphonates transport system permease    bll7945
action filter_type
action find
entity phosphonates transport system permease    bll7945
relation cell component
type part
['phosphonates transport system permease    bll7945', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?q WHERE { resource:phosphonates_transport_system_permease____bll7945 property:cell_component ?q . ?q rdf:type ontology:part }
[]
part
Q14349455
SYSTEM
membrane
Q14349455
(Q24227552,P681,c(Q15989253))
action filter_type
action find
entity Q24227552
relation P681
type Q15989253
[ANSWER] is a component of phosphonates transport system permease bll7945
['Q24227552', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?q WHERE { resource:Q24227552 property:P681 ?q . ?q rdf:type ontology:Q15989253 }
membrane
Membrane is a component of phosphonates transport system permease bll7945
membrane
action filter_type
action find
entity phosphonates transport system permease    bll7945
relation cell component
type part
['phosphonates transport system permease    bll7945', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?q WHERE { resource:phosphonates_transport_system_permease____bll7945 property:cell_component ?q . ?q rdf:type ontology:part }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q24227552
P703
Q16521
USER
Where is phosphonates transport system permease    bll7945 found ?
(Q24227552,P703,c(Q16521))
action filter_type
action find
entity Q24227552
relation P703
type Q16521
['Q24227552', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?e WHERE { resource:Q24227552 property:P703 ?e . ?e rdf:type ontology:Q16521 }
phosphonates transport system permease    bll7945
action filter_type
action find
entity phosphonates transport system permease    bll7945
relation found in taxon
type taxon
['phosphonates transport system permease    bll7945', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?e WHERE { resource:phosphonates_transport_system_permease____bll7945 property:found_in_taxon ?e . ?e rdf:type ontology:taxon }
[]
taxon
Q21397598
SYSTEM
Bradyrhizobium japonicum USDA 110
Q21397598
(Q24227552,P703,c(Q16521))
action filter_type
action find
entity Q24227552
relation P703
type Q16521
Phosphonates transport system permease bll7945 is found in [ANSWER]
['Q24227552', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?e WHERE { resource:Q24227552 property:P703 ?e . ?e rdf:type ontology:Q16521 }
Bradyrhizobium japonicum USDA 110
Phosphonates transport system permease bll7945 is found in Bradyrhizobium japonicum USDA 110
Bradyrhizobium japonicum USDA 110
action filter_type
action find
entity phosphonates transport system permease    bll7945
relation found in taxon
type taxon
['phosphonates transport system permease    bll7945', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?e WHERE { resource:phosphonates_transport_system_permease____bll7945 property:found_in_taxon ?e . ?e rdf:type ontology:taxon }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q21397598 Q23614497
P703
Q181394
USER
Is sensor kinase protein rcsC    SRU_2394 found in that taxon ?
(Q23614497,P703,Q21397598)
action is_in
entity Q23614497
action find
entity Q21397598
relation P703
['Q23614497', 'P703', 'Q21397598']
ASK WHERE { resource:Q21397598 property:P703 resource:Q23614497 }
Bradyrhizobium japonicum USDA 110 sensor kinase protein rcsC    SRU_2394
action is_in
entity sensor kinase protein rcsC    SRU_2394
action find
entity Bradyrhizobium japonicum USDA 110
relation found in taxon
['sensor kinase protein rcsC    SRU_2394', 'found in taxon', 'Bradyrhizobium japonicum USDA 110']
ASK WHERE { resource:Bradyrhizobium_japonicum_USDA_110 property:found_in_taxon resource:sensor_kinase_protein_rcsC____SRU_2394 }
[]
nutrient
SYSTEM
NO
(Q23614497,P703,Q21397598)
action is_in
entity Q23614497
action find
entity Q21397598
relation P703
[ANSWER]
['Q23614497', 'P703', 'Q21397598']
ASK WHERE { resource:Q21397598 property:P703 resource:Q23614497 }
No
action is_in
entity sensor kinase protein rcsC    SRU_2394
action find
entity Bradyrhizobium japonicum USDA 110
relation found in taxon
['sensor kinase protein rcsC    SRU_2394', 'found in taxon', 'Bradyrhizobium japonicum USDA 110']
ASK WHERE { resource:Bradyrhizobium_japonicum_USDA_110 property:found_in_taxon resource:sensor_kinase_protein_rcsC____SRU_2394 }
[]
Verification (Boolean) (All)
Verification|3 entities, all direct, 2 are query entities
Q24227552 Q22329399 Q29548
P681
Q5058355
USER
Is ascus epiplasm and plasma membrane a cell component of phosphonates transport system permease    bll7945 ?
(Q24227552,P681,Q22329399) (Q24227552,P681,Q29548)
action is_in
entity Q24227552
action intersection
action find_reverse
entity Q22329399
relation P681
action find_reverse
entity Q29548
relation P681
['Q24227552', 'P681', 'Q22329399'] ['Q24227552', 'P681', 'Q29548']
ASK WHERE { resource:Q24227552 property:P681 resource:Q22329399 . resource:Q24227552 property:P681 resource:Q29548 }
phosphonates transport system permease    bll7945 ascus epiplasm plasma membrane
action is_in
entity phosphonates transport system permease    bll7945
action intersection
action find_reverse
entity ascus epiplasm
relation cell component
action find_reverse
entity plasma membrane
relation cell component
['phosphonates transport system permease    bll7945', 'cell component', 'ascus epiplasm'] ['phosphonates transport system permease    bll7945', 'cell component', 'plasma membrane']
ASK WHERE { resource:phosphonates_transport_system_permease____bll7945 property:cell_component resource:ascus_epiplasm . resource:phosphonates_transport_system_permease____bll7945 property:cell_component resource:plasma_membrane }
[]
cellular component
SYSTEM
NO and YES respectively
(Q24227552,P681,Q22329399) (Q24227552,P681,Q29548)
action is_in
entity Q24227552
action intersection
action find_reverse
entity Q22329399
relation P681
action find_reverse
entity Q29548
relation P681
[ANSWER]
['Q24227552', 'P681', 'Q22329399'] ['Q24227552', 'P681', 'Q29548']
ASK WHERE { resource:Q24227552 property:P681 resource:Q22329399 . resource:Q24227552 property:P681 resource:Q29548 }
NO and YES respectively
action is_in
entity phosphonates transport system permease    bll7945
action intersection
action find_reverse
entity ascus epiplasm
relation cell component
action find_reverse
entity plasma membrane
relation cell component
['phosphonates transport system permease    bll7945', 'cell component', 'ascus epiplasm'] ['phosphonates transport system permease    bll7945', 'cell component', 'plasma membrane']
ASK WHERE { resource:phosphonates_transport_system_permease____bll7945 property:cell_component resource:ascus_epiplasm . resource:phosphonates_transport_system_permease____bll7945 property:cell_component resource:plasma_membrane }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q21980274
Q5058355
USER
And how about Ubiquitin carboxyl-terminal hydrolase 17-like protein E?
(Q21980274,P681,c(Q5058355))
action filter_type
action find
entity Q21980274
relation P681
type Q5058355
['Q21980274', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?t WHERE { resource:Q21980274 property:P681 ?t . ?t rdf:type ontology:Q5058355 }
Ubiquitin carboxyl-terminal hydrolase 17-like protein E
action filter_type
action find
entity Ubiquitin carboxyl-terminal hydrolase 17-like protein E
relation cell component
type cellular component
['Ubiquitin carboxyl-terminal hydrolase 17-like protein E', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?t WHERE { resource:Ubiquitin_carboxyl-terminal_hydrolase_17-like_protein_E property:cell_component ?t . ?t rdf:type ontology:cellular_component }
[]
cellular component
Q79927 Q14329032
SYSTEM
endoplasmic reticulum, endoplasmic reticulum membrane
Q79927 Q14329032
(Q21980274,P681,c(Q5058355))
action filter_type
action find
entity Q21980274
relation P681
type Q5058355
[ANSWERS]
['Q21980274', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?t WHERE { resource:Q21980274 property:P681 ?t . ?t rdf:type ontology:Q5058355 }
endoplasmic reticulum endoplasmic reticulum membrane
endoplasmic reticulum endoplasmic reticulum membrane
action filter_type
action find
entity Ubiquitin carboxyl-terminal hydrolase 17-like protein E
relation cell component
type cellular component
['Ubiquitin carboxyl-terminal hydrolase 17-like protein E', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?t WHERE { resource:Ubiquitin_carboxyl-terminal_hydrolase_17-like_protein_E property:cell_component ?t . ?t rdf:type ontology:cellular_component }
[]
Simple Question (Direct)
Simple Question|Mult. Entity|Indirect
Q79927 Q14329032
P361
Q5058355
USER
Which cellular components are parts of endoplasmic reticulum and endoplasmic reticulum membrane ?
(c(Q5058355),P361,Q79927) (c(Q5058355),P361,Q14329032)
action union
action filter_type
action find_reverse
entity Q79927
relation P361
type Q5058355
action filter_type
action find_reverse
entity Q14329032
relation P361
type Q5058355
[{'concept': 'Q5058355'}, 'P361', 'Q79927'] [{'concept': 'Q5058355'}, 'P361', 'Q14329032']
SELECT DISTINCT ?y WHERE { ?y property:P361 ?a . VALUES ( ?a ) { ( resource:Q79927 ) ( resource:Q14329032 ) } }
endoplasmic reticulum endoplasmic reticulum membrane
action union
action filter_type
action find_reverse
entity endoplasmic reticulum
relation part of
type cellular component
action filter_type
action find_reverse
entity endoplasmic reticulum membrane
relation part of
type cellular component
[{'concept': 'cellular component'}, 'part of', 'endoplasmic reticulum'] [{'concept': 'cellular component'}, 'part of', 'endoplasmic reticulum membrane']
SELECT DISTINCT ?y WHERE { ?y property:part_of ?a . VALUES ( ?a ) { ( resource:endoplasmic_reticulum ) ( resource:endoplasmic_reticulum_membrane ) } }
[]
cellular component
Q21107992 Q21107992 Q22326802
SYSTEM
endoplasmic reticulum palmitoyltransferase complex for 3rd, ER ubiquitin ligase complex for 1st, 2nd
Q21107992 Q21107992 Q22326802 Q21469807 Q21971286 Q21115425 Q22326943
(c(Q5058355),P361,Q79927) (c(Q5058355),P361,Q14329032)
action union
action filter_type
action find_reverse
entity Q79927
relation P361
type Q5058355
action filter_type
action find_reverse
entity Q14329032
relation P361
type Q5058355
[ANSWERS]
[{'concept': 'Q5058355'}, 'P361', 'Q79927'] [{'concept': 'Q5058355'}, 'P361', 'Q14329032']
SELECT DISTINCT ?y WHERE { ?y property:P361 ?a . VALUES ( ?a ) { ( resource:Q79927 ) ( resource:Q14329032 ) } }
ER ubiquitin ligase complex ER ubiquitin ligase complex endoplasmic reticulum palmitoyltransferase complex dolichyl-phosphate-mannose-protein mannosyltransferase complex oligosaccharyltransferase complex Ire1 complex fatty acid elongase complex
ER ubiquitin ligase complex, ER ubiquitin ligase complex and endoplasmic reticulum palmitoyltransferase complex are parts of endoplasmic reticulum and endoplasmic reticulum membrane
ER ubiquitin ligase complex ER ubiquitin ligase complex endoplasmic reticulum palmitoyltransferase complex
action union
action filter_type
action find_reverse
entity endoplasmic reticulum
relation part of
type cellular component
action filter_type
action find_reverse
entity endoplasmic reticulum membrane
relation part of
type cellular component
[{'concept': 'cellular component'}, 'part of', 'endoplasmic reticulum'] [{'concept': 'cellular component'}, 'part of', 'endoplasmic reticulum membrane']
SELECT DISTINCT ?y WHERE { ?y property:part_of ?a . VALUES ( ?a ) { ( resource:endoplasmic_reticulum ) ( resource:endoplasmic_reticulum_membrane ) } }
[]