Simple Question (Direct)
Simple Question
Q21756867
P702
Q863908
USER
Which gene encodes sensor histidine kinase    TTHA1503 ?
(Q21756867,P702,c(Q863908))
action filter_type
action find
entity Q21756867
relation P702
type Q863908
['Q21756867', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:Q863908 . resource:Q21756867 property:P702 ?m }
sensor histidine kinase    TTHA1503
action filter_type
action find
entity sensor histidine kinase    TTHA1503
relation encoded by
type nucleic acid sequence
['sensor histidine kinase    TTHA1503', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:nucleic_acid_sequence . resource:sensor_histidine_kinase____TTHA1503 property:encoded_by ?m }
[]
nucleic acid sequence
Q21687483
SYSTEM
sensor histidine kinase    TTHA1503
Q21687483
(Q21756867,P702,c(Q863908))
action filter_type
action find
entity Q21756867
relation P702
type Q863908
Sensor histidine kinase TTHA1503 encodes sensor histidine kinase TTHA1503
['Q21756867', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:Q863908 . resource:Q21756867 property:P702 ?m }
sensor histidine kinase    TTHA1503
Sensor histidine kinase TTHA1503 encodes sensor histidine kinase TTHA1503
sensor histidine kinase    TTHA1503
action filter_type
action find
entity sensor histidine kinase    TTHA1503
relation encoded by
type nucleic acid sequence
['sensor histidine kinase    TTHA1503', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?m WHERE { ?m rdf:type ontology:nucleic_acid_sequence . resource:sensor_histidine_kinase____TTHA1503 property:encoded_by ?m }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21756867
P681
Q15989253
USER
Which part is a component of sensor histidine kinase    TTHA1503 ?
(Q21756867,P681,c(Q15989253))
action filter_type
action find
entity Q21756867
relation P681
type Q15989253
['Q21756867', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?r WHERE { resource:Q21756867 property:P681 ?r . ?r rdf:type ontology:Q15989253 }
sensor histidine kinase    TTHA1503
action filter_type
action find
entity sensor histidine kinase    TTHA1503
relation cell component
type part
['sensor histidine kinase    TTHA1503', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?r WHERE { resource:sensor_histidine_kinase____TTHA1503 property:cell_component ?r . ?r rdf:type ontology:part }
[]
part
Q14349455
SYSTEM
membrane
Q14349455
(Q21756867,P681,c(Q15989253))
action filter_type
action find
entity Q21756867
relation P681
type Q15989253
The [ANSWER] is a component of sensor histidine kinase TTHA1503
['Q21756867', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?r WHERE { resource:Q21756867 property:P681 ?r . ?r rdf:type ontology:Q15989253 }
membrane
The membrane is a component of sensor histidine kinase TTHA1503
membrane
action filter_type
action find
entity sensor histidine kinase    TTHA1503
relation cell component
type part
['sensor histidine kinase    TTHA1503', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?r WHERE { resource:sensor_histidine_kinase____TTHA1503 property:cell_component ?r . ?r rdf:type ontology:part }
[]
Simple Question (Ellipsis)
Incomplete|object parent is changed, subject and predicate remain same
Q21756867
Q5058355
USER
And which cellular component?
(Q21756867,P681,c(Q5058355))
action filter_type
action find
entity Q21756867
relation P681
type Q5058355
['Q21756867', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?y WHERE { resource:Q21756867 property:P681 ?y . ?y rdf:type ontology:Q5058355 }
sensor histidine kinase    TTHA1503
action filter_type
action find
entity sensor histidine kinase    TTHA1503
relation cell component
type cellular component
['sensor histidine kinase    TTHA1503', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?y WHERE { resource:sensor_histidine_kinase____TTHA1503 property:cell_component ?y . ?y rdf:type ontology:cellular_component }
[]
cellular component
Q3824358
SYSTEM
intracellular
Q3824358
(Q21756867,P681,c(Q5058355))
action filter_type
action find
entity Q21756867
relation P681
type Q5058355
[ANSWER]
['Q21756867', 'P681', {'concept': 'Q5058355'}]
SELECT DISTINCT ?y WHERE { resource:Q21756867 property:P681 ?y . ?y rdf:type ontology:Q5058355 }
intracellular
intracellular
action filter_type
action find
entity sensor histidine kinase    TTHA1503
relation cell component
type cellular component
['sensor histidine kinase    TTHA1503', 'cell component', {'concept': 'cellular component'}]
SELECT DISTINCT ?y WHERE { resource:sensor_histidine_kinase____TTHA1503 property:cell_component ?y . ?y rdf:type ontology:cellular_component }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Mult. entity type
Q22329846
P361
Q5058355 Q223557 Q5058355
USER
How many cellular components are a part of around the same number of cellular components or physical objects as icosahedral viral capsid, neck ?
(c(Q5058355),P361,c(Q5058355)|c(Q223557))
action count
action approx
action union
action find_tuple_counts
relation P361
type Q5058355
type Q5058355
action find_tuple_counts
relation P361
type Q5058355
type Q223557
action count
action filter_multi_types
action find
entity Q22329846
relation P361
type Q5058355
type Q223557
[{'concept': 'Q5058355'}, 'P361', [{'concept': 'Q5058355'}, {'concept': 'Q223557'}]]
SELECT DISTINCT ( COUNT ( ?z ) AS ?k ) WHERE { { SELECT DISTINCT ( COUNT ( ?h ) AS ?o ) WHERE { resource:Q22329846 property:P361 ?h . { { ?h rdf:type ontology:Q223557 } UNION { ?h rdf:type ontology:Q5058355 } } } } . FILTER ( ?j = ?o ) . { SELECT DISTINCT ( COUNT ( ?w ) AS ?j ) ?z WHERE { VALUES ( ?i ) { ( ontology:Q5058355 ) ( ontology:Q223557 ) } . ?w rdf:type ?i } GROUP BY ?z } }
icosahedral viral capsid, neck
action count
action approx
action union
action find_tuple_counts
relation part of
type cellular component
type cellular component
action find_tuple_counts
relation part of
type cellular component
type physical object
action count
action filter_multi_types
action find
entity icosahedral viral capsid, neck
relation part of
type cellular component
type physical object
[{'concept': 'cellular component'}, 'part of', [{'concept': 'cellular component'}, {'concept': 'physical object'}]]
SELECT DISTINCT ( COUNT ( ?z ) AS ?k ) WHERE { { SELECT DISTINCT ( COUNT ( ?h ) AS ?o ) WHERE { resource:icosahedral_viral_capsid,_neck property:part_of ?h . { { ?h rdf:type ontology:physical_object } UNION { ?h rdf:type ontology:cellular_component } } } } . FILTER ( ?j = ?o ) . { SELECT DISTINCT ( COUNT ( ?w ) AS ?j ) ?z WHERE { VALUES ( ?i ) { ( ontology:cellular_component ) ( ontology:physical_object ) } . ?w rdf:type ?i } GROUP BY ?z } }
[]
cellular component physical object cellular component
SYSTEM
70
Q22327392 Q22328737 Q14912978 Q21108229 Q22327015 Q22327805 Q14864978 Q14864971 Q22327396 Q22326356 Q22327622 Q24570686 Q22327479 Q22327475 Q21172343 Q21172341 Q22327043 Q22326188 Q22326831 Q14877465 Q22327676 Q22326089 Q22327469 Q24576579 Q14914004 Q21095183 Q14905221 Q22327389 Q21105647 Q15320191 Q21106212 Q22326799 Q22328904 Q22329850 Q26253851 Q22328035 Q22327397 Q22329249 Q22327525 Q22327526 Q22329848 Q22329843 Q22329844 Q22329845 Q22329846 Q24570682 Q14911512 Q24570689 Q22327468 Q22327061 Q22327803 Q24576582 Q22329409 Q22328884 Q14873267 Q22329076 Q22328801 Q22330049 Q2914458 Q22325454 Q21097505 Q16949578 Q22327686 Q22327108 Q22329467 Q22327341 Q6414172 Q22327736 Q193825 Q22327423
(c(Q5058355),P361,c(Q5058355)|c(Q223557))
action count
action approx
action union
action find_tuple_counts
relation P361
type Q5058355
type Q5058355
action find_tuple_counts
relation P361
type Q5058355
type Q223557
action count
action filter_multi_types
action find
entity Q22329846
relation P361
type Q5058355
type Q223557
[ANSWER]
[{'concept': 'Q5058355'}, 'P361', [{'concept': 'Q5058355'}, {'concept': 'Q223557'}]]
SELECT DISTINCT ( COUNT ( ?z ) AS ?k ) WHERE { { SELECT DISTINCT ( COUNT ( ?h ) AS ?o ) WHERE { resource:Q22329846 property:P361 ?h . { { ?h rdf:type ontology:Q223557 } UNION { ?h rdf:type ontology:Q5058355 } } } } . FILTER ( ?j = ?o ) . { SELECT DISTINCT ( COUNT ( ?w ) AS ?j ) ?z WHERE { VALUES ( ?i ) { ( ontology:Q5058355 ) ( ontology:Q223557 ) } . ?w rdf:type ?i } GROUP BY ?z } }
symbiont-containing vacuolar space iron-sulfur cluster assembly complex mitochondrial nucleoid subapical complex photosystem II oxygen evolving complex photosynthetic membrane lipopolysaccharide receptor complex succinate dehydrogenase complex scaffoldin complex membrane protein complex side of membrane extrinsic component of presynaptic membrane presynapse postsynapse inner dense plaque of desmosome outer dense plaque of desmosome plasma membrane-derived thylakoid ribulose bisphosphate carboxylase complex aster nuclear membrane part receptor complex plasma membrane-derived thylakoid membrane contractile fiber part female germline ring canal inner rim intrinsic component of presynaptic membrane synaptic membrane dendritic spine head symbiont-containing vacuole membrane host cell part transmembrane transporter complex synaptic cleft GPI-anchor transamidase complex alpha-1,6-mannosyltransferase complex dosage compensation complex icosahedral viral capsid, spike integral component of spine apparatus membrane organelle lumen extracellular exosome complex virion nucleoid cytoplasmic side of dendritic spine plasma membrane subsynaptic reticulum icosahedral viral capsid, collar viral outer capsid viral intermediate capsid viral inner capsid icosahedral viral capsid, neck spine apparatus membrane stereocilium extrinsic component of postsynaptic membrane female germline ring canal outer rim extracellular isoamylase complex nuclear membrane complex Bqt3-Bqt4 intrinsic component of postsynaptic membrane extracellular core region of desmosome organellar ribosome cell-cell junction plastid nucleoid TRAPPI protein complex eif4e-cup complex extracellular space curli dendritic spine neck Autapse prospore membrane mitochondrial membrane part bacterial-type flagellum part plasma membrane-derived thylakoid photosystem II kinocilium chaperone-mediated autophagy translocation complex extracellular matrix extracellular organelle
70
action count
action approx
action union
action find_tuple_counts
relation part of
type cellular component
type cellular component
action find_tuple_counts
relation part of
type cellular component
type physical object
action count
action filter_multi_types
action find
entity icosahedral viral capsid, neck
relation part of
type cellular component
type physical object
[{'concept': 'cellular component'}, 'part of', [{'concept': 'cellular component'}, {'concept': 'physical object'}]]
SELECT DISTINCT ( COUNT ( ?z ) AS ?k ) WHERE { { SELECT DISTINCT ( COUNT ( ?h ) AS ?o ) WHERE { resource:icosahedral_viral_capsid,_neck property:part_of ?h . { { ?h rdf:type ontology:physical_object } UNION { ?h rdf:type ontology:cellular_component } } } } . FILTER ( ?j = ?o ) . { SELECT DISTINCT ( COUNT ( ?w ) AS ?j ) ?z WHERE { VALUES ( ?i ) { ( ontology:cellular_component ) ( ontology:physical_object ) } . ?w rdf:type ?i } GROUP BY ?z } }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Mult. entity type|Incomplete
Q22329160
P361
Q5058355 Q223557 Q5058355
USER
And also tell me about ventral disc overlap zone?
(c(Q5058355),P361,c(Q5058355)|c(Q223557))
action count
action approx
action union
action find_tuple_counts
relation P361
type Q5058355
type Q5058355
action find_tuple_counts
relation P361
type Q5058355
type Q223557
action count
action filter_multi_types
action find
entity Q22329160
relation P361
type Q5058355
type Q223557
[{'concept': 'Q5058355'}, 'P361', [{'concept': 'Q5058355'}, {'concept': 'Q223557'}]]
SELECT DISTINCT ( COUNT ( ?o ) AS ?b ) WHERE { { SELECT DISTINCT ( COUNT ( ?r ) AS ?n ) ?o WHERE { ?r rdf:type ?c . VALUES ( ?c ) { ( ontology:Q223557 ) ( ontology:Q5058355 ) } } GROUP BY ?o } . FILTER ( ?n = ?y ) . { SELECT DISTINCT ( COUNT ( ?x ) AS ?y ) WHERE { resource:Q22329160 property:P361 ?x . { { ?x rdf:type ontology:Q5058355 } UNION { ?x rdf:type ontology:Q223557 } } } } }
ventral disc overlap zone
action count
action approx
action union
action find_tuple_counts
relation part of
type cellular component
type cellular component
action find_tuple_counts
relation part of
type cellular component
type physical object
action count
action filter_multi_types
action find
entity ventral disc overlap zone
relation part of
type cellular component
type physical object
[{'concept': 'cellular component'}, 'part of', [{'concept': 'cellular component'}, {'concept': 'physical object'}]]
SELECT DISTINCT ( COUNT ( ?o ) AS ?b ) WHERE { { SELECT DISTINCT ( COUNT ( ?r ) AS ?n ) ?o WHERE { ?r rdf:type ?c . VALUES ( ?c ) { ( ontology:physical_object ) ( ontology:cellular_component ) } } GROUP BY ?o } . FILTER ( ?n = ?y ) . { SELECT DISTINCT ( COUNT ( ?x ) AS ?y ) WHERE { resource:ventral_disc_overlap_zone property:part_of ?x . { { ?x rdf:type ontology:cellular_component } UNION { ?x rdf:type ontology:physical_object } } } } }
[]
cellular component physical object cellular component
SYSTEM
140
Q22327293 Q14329032 Q22327448 Q21116315 Q14876131 Q14878067 Q22327403 Q14864977 Q22327994 Q22327995 Q22327623 Q22327621 Q21116899 Q14860843 Q22327688 Q22327687 Q22327473 Q22329449 Q22327447 Q26253880 Q24576568 Q24576567 Q22330482 Q22325973 Q22326870 Q671136 Q22326873 Q21469807 Q22325381 Q24576572 Q22327513 Q22325480 Q21120634 Q3824358 Q22329021 Q21120639 Q22328085 Q22328655 Q22329861 Q22329866 Q22329864 Q22330033 Q22328495 Q22326802 Q22329161 Q22329160 Q22327284 Q22330462 Q22327411 Q22327413 Q22327412 Q22327419 Q22329158 Q21109092 Q14864382 Q22329157 Q22329857 Q22329856 Q22329855 Q22329854 Q22329852 Q24570696 Q22326943 Q21136996 Q22329858 Q14906187 Q22327494 Q22327529 Q22327407 Q22327654 Q22327653 Q22327524 Q22329849 Q22329847 Q21971414 Q21095089 Q22327498 Q22330052 Q22330059 Q22327493 Q22325375 Q24576587 Q21108411 Q22325981 Q21104759 Q21484280 Q22329402 Q22326951 Q24570673 Q22328769 Q14877492 Q22328074 Q22328762 Q22327083 Q14901717 Q22330234 Q22330236 Q22330238 Q14819441 Q21108403 Q14330626 Q22328839 Q24576590 Q24576591 Q21105674 Q22327509 Q21468808 Q14863683 Q22327505 Q22327502 Q22327501 Q22327500 Q24570705 Q14864390 Q14330629 Q21971286 Q21105988 Q21095308 Q22330225 Q22326845 Q22326843 Q79927 Q14876059 Q22327647 Q22327510 Q22327511 Q21112489 Q22327517 Q22329403 Q26253890 Q22328584 Q22327343 Q22327474 Q14860540 Q1640852 Q22327421 Q21115425 Q22328601 Q22327390 Q21095620
(c(Q5058355),P361,c(Q5058355)|c(Q223557))
action count
action approx
action union
action find_tuple_counts
relation P361
type Q5058355
type Q5058355
action find_tuple_counts
relation P361
type Q5058355
type Q223557
action count
action filter_multi_types
action find
entity Q22329160
relation P361
type Q5058355
type Q223557
[ANSWER]
[{'concept': 'Q5058355'}, 'P361', [{'concept': 'Q5058355'}, {'concept': 'Q223557'}]]
SELECT DISTINCT ( COUNT ( ?o ) AS ?b ) WHERE { { SELECT DISTINCT ( COUNT ( ?r ) AS ?n ) ?o WHERE { ?r rdf:type ?c . VALUES ( ?c ) { ( ontology:Q223557 ) ( ontology:Q5058355 ) } } GROUP BY ?o } . FILTER ( ?n = ?y ) . { SELECT DISTINCT ( COUNT ( ?x ) AS ?y ) WHERE { resource:Q22329160 property:P361 ?x . { { ?x rdf:type ontology:Q5058355 } UNION { ?x rdf:type ontology:Q223557 } } } } }
ciliary part endoplasmic reticulum membrane interleukin-35 complex viral nucleocapsid compact myelin organelle membrane PTEX complex plasma membrane part rhoptry rhoptry membrane lumenal side of membrane leaflet of membrane bilayer complement component C1 complex nuclear outer membrane prospore membrane leading edge prospore membrane spindle pole body attachment site intrinsic component of organelle membrane lateral shield interleukin-27 complex extrinsic component of postsynaptic endosome membrane extracellular matrix of synaptic cleft perisynaptic extracellular matrix ventral disc supernumerary microtubule array larval serum protein complex DAPK1-calmodulin complex synaptic vesicle cell division site part dolichyl-phosphate-mannose-protein mannosyltransferase complex HU-DNA complex presynaptic endosome membrane postsynaptic specialization extracellular matrix component interleukin-12 complex intracellular apical complex interleukin-23 complex external encapsulating structure cell septum part viral capsid, decoration virus tail, major subunit virus tail, minor subunit capsomere spitzenkorper endoplasmic reticulum palmitoyltransferase complex ventral disc lateral crest ventral disc overlap zone cell projection part longitudinal side of cell surface extracellular space of host extrahaustorial matrix extra-invasive hyphal space inhibin complex ventral disc dorsal microribbon nuclear outer membrane-endoplasmic reticulum membrane network presynaptic active zone ventral disc crossbridge virus tail, fiber virus tail, baseplate virus tail, tube virus tail, sheath virus tail, shaft extrinsic component of spine apparatus membrane fatty acid elongase complex immunoglobulin complex, circulating virus tail, tip CRLF-CLCF1 complex postsynaptic endosome presynaptic grid activin complex annulate lamellae membrane region presynaptic active zone dense projection icosahedral viral capsid, collar fiber icosahedral viral capsid, neck fiber plasma lipoprotein particle blood microparticle postsynaptic endocytic zone dinoflagellate antapex cell surface furrow extrinsic component of synaptic vesicle membrane IHF-DNA complex intrinsic component of postsynaptic endosome membrane CNTFR-CLCF1 complex classical-complement-pathway C3/C5 convertase complex perinuclear endoplasmic reticulum membrane retromer, cargo-selective complex inner membrane complex oxidoreductase complex postsynaptic endosome membrane viral portal complex lateral loop rhoptry lumen Dxr protein complex PTEN phosphatase complex intracellular part basal ring of apical complex dinoflagellate apex polar ring of apical complex fibrinogen complex synaptic vesicle lumen myelin sheath abaxonal region viral scaffold intrinsic component of presynaptic endosome membrane intrinsic component of spine apparatus membrane Nem1-Spo7 phosphatase complex postsynaptic cytosol retromer, tubulation complex insulin-like growth factor binding protein complex presynaptic endosome presynaptic active zone cytoplasmic component presynaptic endocytic zone cytoplasmic component presynaptic endocytic zone postsynaptic endocytic zone cytoplasmic component synaptic vesicle membrane myelin sheath adaxonal region oligosaccharyltransferase complex stereocilium membrane retromer complex rhoptry neck intracellular organelle part Dsc E3 ubiquitin ligase complex endoplasmic reticulum phosphatidylinositol 3-kinase complex external encapsulating structure part presynaptic cytosol postsynaptic cytoskeleton stereocilium tip presynaptic cytoskeleton basal labyrinth extrinsic component of presynaptic endosome membrane Kibra-Ex-Mer complex plasma membrane-derived photosystem I intrinsic component of synaptic vesicle membrane clathrin-coated pit Schmidt-Lanterman incisure bursicon neuropeptide hormone complex Ire1 complex H-NS complex symbiont-containing vacuolar membrane network Flemming body
140
action count
action approx
action union
action find_tuple_counts
relation part of
type cellular component
type cellular component
action find_tuple_counts
relation part of
type cellular component
type physical object
action count
action filter_multi_types
action find
entity ventral disc overlap zone
relation part of
type cellular component
type physical object
[{'concept': 'cellular component'}, 'part of', [{'concept': 'cellular component'}, {'concept': 'physical object'}]]
SELECT DISTINCT ( COUNT ( ?o ) AS ?b ) WHERE { { SELECT DISTINCT ( COUNT ( ?r ) AS ?n ) ?o WHERE { ?r rdf:type ?c . VALUES ( ?c ) { ( ontology:physical_object ) ( ontology:cellular_component ) } } GROUP BY ?o } . FILTER ( ?n = ?y ) . { SELECT DISTINCT ( COUNT ( ?x ) AS ?y ) WHERE { resource:ventral_disc_overlap_zone property:part_of ?x . { { ?x rdf:type ontology:cellular_component } UNION { ?x rdf:type ontology:physical_object } } } } }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21687483
P703
Q16521
USER
Which taxon is sensor histidine kinase    TTHA1503 found in ?
(Q21687483,P703,c(Q16521))
action filter_type
action find
entity Q21687483
relation P703
type Q16521
['Q21687483', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?p WHERE { resource:Q21687483 property:P703 ?p . ?p rdf:type ontology:Q16521 }
sensor histidine kinase    TTHA1503
action filter_type
action find
entity sensor histidine kinase    TTHA1503
relation found in taxon
type taxon
['sensor histidine kinase    TTHA1503', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?p WHERE { resource:sensor_histidine_kinase____TTHA1503 property:found_in_taxon ?p . ?p rdf:type ontology:taxon }
[]
taxon
Q21065233
SYSTEM
Thermus thermophilus HB8
Q21065233
(Q21687483,P703,c(Q16521))
action filter_type
action find
entity Q21687483
relation P703
type Q16521
Sensor histidine kinase TTHA1503 is found in [ANSWER]
['Q21687483', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?p WHERE { resource:Q21687483 property:P703 ?p . ?p rdf:type ontology:Q16521 }
Thermus thermophilus HB8
Sensor histidine kinase TTHA1503 is found in Thermus thermophilus HB8
Thermus thermophilus HB8
action filter_type
action find
entity sensor histidine kinase    TTHA1503
relation found in taxon
type taxon
['sensor histidine kinase    TTHA1503', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?p WHERE { resource:sensor_histidine_kinase____TTHA1503 property:found_in_taxon ?p . ?p rdf:type ontology:taxon }
[]
Logical Reasoning (All)
Logical|Intersection|Multiple_Relation
Q22291617 Q21065233
P682 P703
Q181394
USER
Which nutrients are found in the taxon Thermus thermophilus HB8 and are a part of the biological process transport ?
AND((c(Q181394),P703,Q21065233), (c(Q181394),P682,Q22291617))
action filter_type
action intersection
action find_reverse
entity Q21065233
relation P703
action find_reverse
entity Q22291617
relation P682
type Q181394
{'AND': [[{'concept': 'Q181394'}, 'P703', 'Q21065233'], [{'concept': 'Q181394'}, 'P682', 'Q22291617']]}
SELECT DISTINCT ?d WHERE { ?d property:P703 resource:Q21065233 . ?d property:P682 resource:Q22291617 . ?d rdf:type ontology:Q181394 }
transport Thermus thermophilus HB8
action filter_type
action intersection
action find_reverse
entity Thermus thermophilus HB8
relation found in taxon
action find_reverse
entity transport
relation biological process
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'found in taxon', 'Thermus thermophilus HB8'], [{'concept': 'nutrient'}, 'biological process', 'transport']]}
SELECT DISTINCT ?d WHERE { ?d property:found_in_taxon resource:Thermus_thermophilus_HB8 . ?d property:biological_process resource:transport . ?d rdf:type ontology:nutrient }
[]
nutrient
Q21766175 Q21766480 Q21756703 Q21765801 Q21978092 Q21978588 Q21765676 Q21765722 Q21756637 Q21977852
SYSTEM
Some of them are peptide ABC transporter permease    TTHA1337, ABC transporter permease    TTHA0355, iron ABC transporter permease    TTHA1629, NADH-quinone oxidoreductase subunit 11    TTHA0094, hypothetical protein    TTHA0443, quaternary ammonium compound-resistance protein    TTHA0935, ABC transporter permease    TTHA1807, pili retraction protein PilT    TTHA1774, type IV pilus assembly protein PilF    TTHA0364, sugar ABC transporter, permease protein    TTHB085
Q21978475 Q21978473 Q21978263 Q21978576 Q21978786 Q21756553 Q21756551 Q21756557 Q21767058 Q21767057 Q21766772 Q21767111 Q21756727 Q21756804 Q21756285 Q21766185 Q21978711 Q21978710 Q21978038 Q21978092 Q21978561 Q21978779 Q21766780 Q21766782 Q21765722 Q21756425 Q21766702 Q21756758 Q21766827 Q21978870 Q21977759 Q21978875 Q21766907 Q21765801 Q21977917 Q21977911 Q21756438 Q21756439 Q21756637 Q21756349 Q21756632 Q21756435 Q21978369 Q21766164 Q21766492 Q21978914 Q21978849 Q21756279 Q21978350 Q21978426 Q21756441 Q21756440 Q21766172 Q21756178 Q21766480 Q21766175 Q21766845 Q21977994 Q21977771 Q21765866 Q21978458 Q21978608 Q21977855 Q21978606 Q21756418 Q21977852 Q21756240 Q21978027 Q21766738 Q21978228 Q21978186 Q21756699 Q21978588 Q21978825 Q21756848 Q21978614 Q21978612 Q21765878 Q21766956 Q21978400 Q21766509 Q21756154 Q21977871 Q21756591 Q21978002 Q21756304 Q21756229 Q21767031 Q21756577 Q21767033 Q21978326 Q21977729 Q21977895 Q21756700 Q21756701 Q21978521 Q21756869 Q21978465 Q21756332 Q21756708 Q21756232 Q21767371 Q21766991 Q21756405 Q21978945 Q21756703 Q21978895 Q21765676
AND((c(Q181394),P703,Q21065233), (c(Q181394),P682,Q22291617))
action filter_type
action intersection
action find_reverse
entity Q21065233
relation P703
action find_reverse
entity Q22291617
relation P682
type Q181394
[ANSWERS]
{'AND': [[{'concept': 'Q181394'}, 'P703', 'Q21065233'], [{'concept': 'Q181394'}, 'P682', 'Q22291617']]}
SELECT DISTINCT ?d WHERE { ?d property:P703 resource:Q21065233 . ?d property:P682 resource:Q22291617 . ?d rdf:type ontology:Q181394 }
Sec-independent protein translocase protein TatA    TTHA0386 large-conductance mechanosensitive channel    TTHA0627 hypothetical protein    TTHA1010 ABC transporter substrate-binding protein    TTHA0766 peptide ABC transporter permease    TTHA0470 sugar ABC transporter permease    TTHA0378 phosphonate ABC transporter, ATP-binding protein, PhnC    D700_p16 sn-glycerol-3-phosphate transport system permease UgpE    D700_p33 substrate-binding protein    TTHA0594 sodium/solute symporter    TTHA0819 branched-chain amino acid ABC transporter permease    TTHA1332 sodium ABC transporter permease NatB    TTHA1923 V-type ATP synthase subunit B    TTHA1272 glycerol-3-phosphate ABC transporter permease    D700_p32 putative protein required for formate dehydrogenase activity    TTHB196 molybdenum ABC transporter permease    TTHA0716 ABC transporter permease    TTHA0070 Mn2+/Zn2+ ABC transporter permease    TTHA0454 extracellular solute-binding protein    D700_p28 hypothetical protein    TTHA0443 cytochrome Caa3 oxidase subunit I    TTHA0312 sugar ABC transporter, permease protein    TTHB086 branched-chain amino acid ABC transporter permease    TTHA1331 ABC transporter permease    TTHA1886 pili retraction protein PilT    TTHA1774 sodium-alanine symporter family protein    TTHA1703 ABC transporter substrate-binding protein    TTHA0196 bifunctional preprotein translocase subunit SecD/SecF    TTHA0697 putative C4-dicarboxylate transporter, periplasmic C4-dicarboxylate-binding protein    TTHB074 V-type ATP synthase subunit D    TTHA1271 sugar ABC transporter ATP-binding protein    TTHA0579 peptide ABC transporter ATP-binding protein    TTHA0472 iron ABC transporter ATP-binding protein    TTHA1630 NADH-quinone oxidoreductase subunit 11    TTHA0094 peptide ABC transporter permease    TTHA1633 amino acid ABC transporter substrate-binding protein    TTHA1171 V-type ATP synthase subunit A    TTHA1273 peptide ABC transporter permease    TTHA0471 type IV pilus assembly protein PilF    TTHA0364 ABC transporter permease    TTHA1460 glycosyltransferase    TTHA0743 hemin ABC transporter, permease protein    TTHB219 type IV pilus retraction protein PilT    TTHA0365 sugar ABC transporter ATP-binding protein    TTHA0975 TolQ-type transport protein    TTHA0684 NADH-quinone oxidoreductase subunit 7    TTHA0084 branched-chain amino acid ABC transporter permease    TTHA0585 sugar ABC transporter substrate-binding protein    TTHA0379 pilus assembly protein PilC    TTHA0794 V-type ATP synthase subunit E    TTHA1276 branched-chain amino acid ABC transporter permease    TTHA0589 sugar ABC transporter, permease protein    TTHB083 branched-chain amino acid ABC transporter permease    TTHA0449 sugar ABC transporter permease    TTHA1303 ABC transporter permease    TTHA0355 peptide ABC transporter permease    TTHA1337 V-type ATP synthase subunit F    TTHA1274 ABC transporter ATP-binding protein    TTHA0715 general secretion pathway protein PilQ    TTHA1383 sugar ABC transporter permease    TTHA1827 iron ABC transporter permease    TTHA0747 spermidine/putrescine ABC transporter ATP-binding protein    TTHA1240 hypothetical protein    TTHA0731 Sec-independent protein translocase protein TatC    TTHA0387 hypothetical protein    TTHA0732 sugar ABC transporter, permease protein    TTHB085 hypothetical protein    TTHA0335 putative iron ABC transporter, permease protein    TTHB176 V-type ATP synthase subunit    TTHA1275 TolR-type transport protein    TTHA0683 spermidine/putrescine ABC transporter permease    TTHA1239 maltose ABC transporter permease    TTHA1650 quaternary ammonium compound-resistance protein    TTHA0935 phosphonate ABC transporter, permease protein, PhnE    D700_p18 sugar ABC transporter substrate-binding protein    TTHA0688 ABC transporter, ATP-binding protein    TTHB175 cation efflux protein    TTHA1040 NADH-quinone oxidoreductase subunit 14    TTHA0097 peptide ABC transporter ATP-binding protein    TTHA0473 hypothetical protein    TTHA1005 ABC transporter substrate-binding protein    TTHA0596 preprotein translocase subunit SecA    TTHA1251 ABC transporter permease    TTHA1855 hypothetical protein    TTHA1889 ABC transporter permease    TTHA0354 maltose ABC transporter permease    TTHA1651 potassium efflux transporter    TTHA0822 ABC transporter permease    TTHA1856 hypothetical protein    TTHA1004 phosphate ABC transporter substrate-binding protein    TTHA0259 sugar ABC transporter permease    TTHA0685 iron ABC transporter, periplasmic iron-binding protein    TTHB177 NADH-quinone oxidoreductase subunit 5    TTHA0086 branched-chain amino acid ABC transporter permease    TTHA0450 spermidine/putrescine ABC transporter permease    TTHA1238 permease protein, ABC-type xylose transporter    D700_p88 sugar ABC transporter permease    TTHA1302 ABC transporter permease    TTHA1338 sugar ABC transporter permease    TTHA0977 sugar ABC transporter permease    TTHA0976 amino acid ABC transporter permease    TTHA1170 peptide ABC transporter permease    TTHA1632 Sec-independent protein translocase protein    TTHA0628 ABC transporter ATP-binding protein    TTHA1838 NADH-quinone oxidoreductase subunit 4    TTHA0087 iron ABC transporter permease    TTHA1629 sensor histidine kinase    TTHA0815 ABC transporter permease    TTHA1807
Pili retraction protein PilT TTHA1774, type IV pilus assembly protein PilF TTHA0364 and sugar ABC transporter, permease protein TTHB085 are found in the taxon Thermus thermophilus HB8 and are a part of the biological process transport
peptide ABC transporter permease    TTHA1337 ABC transporter permease    TTHA0355 iron ABC transporter permease    TTHA1629 NADH-quinone oxidoreductase subunit 11    TTHA0094 hypothetical protein    TTHA0443 quaternary ammonium compound-resistance protein    TTHA0935 ABC transporter permease    TTHA1807 pili retraction protein PilT    TTHA1774 type IV pilus assembly protein PilF    TTHA0364 sugar ABC transporter, permease protein    TTHB085
action filter_type
action intersection
action find_reverse
entity Thermus thermophilus HB8
relation found in taxon
action find_reverse
entity transport
relation biological process
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'found in taxon', 'Thermus thermophilus HB8'], [{'concept': 'nutrient'}, 'biological process', 'transport']]}
SELECT DISTINCT ?d WHERE { ?d property:found_in_taxon resource:Thermus_thermophilus_HB8 . ?d property:biological_process resource:transport . ?d rdf:type ontology:nutrient }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Mult. entity type
Q21766175 Q8054
P688
Q863908
USER
How many nucleic acid sequences encode peptide ABC transporter permease    TTHA1337 or protein ?
(c(Q863908),P688,Q21766175) (c(Q863908),P688,Q8054)
action count
action union
action filter_type
action find_reverse
entity Q21766175
relation P688
type Q863908
action filter_type
action find_reverse
entity Q8054
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q21766175'] [{'concept': 'Q863908'}, 'P688', 'Q8054']
SELECT DISTINCT ( COUNT ( ?t ) AS ?y ) WHERE { ?t property:P688 ?r . VALUES ( ?r ) { ( resource:Q21766175 ) ( resource:Q8054 ) } }
peptide ABC transporter permease    TTHA1337 protein
action count
action union
action filter_type
action find_reverse
entity peptide ABC transporter permease    TTHA1337
relation encodes
type nucleic acid sequence
action filter_type
action find_reverse
entity protein
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'peptide ABC transporter permease    TTHA1337'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'protein']
SELECT DISTINCT ( COUNT ( ?t ) AS ?y ) WHERE { ?t property:encodes ?r . VALUES ( ?r ) { ( resource:peptide_ABC_transporter_permease____TTHA1337 ) ( resource:protein ) } }
[]
nucleic acid sequence
SYSTEM
2
Q21687593 Q20747295
(c(Q863908),P688,Q21766175) (c(Q863908),P688,Q8054)
action count
action union
action filter_type
action find_reverse
entity Q21766175
relation P688
type Q863908
action filter_type
action find_reverse
entity Q8054
relation P688
type Q863908
[ANSWER]
[{'concept': 'Q863908'}, 'P688', 'Q21766175'] [{'concept': 'Q863908'}, 'P688', 'Q8054']
SELECT DISTINCT ( COUNT ( ?t ) AS ?y ) WHERE { ?t property:P688 ?r . VALUES ( ?r ) { ( resource:Q21766175 ) ( resource:Q8054 ) } }
peptide ABC transporter permease    TTHA1337 protein-coding gene
2
action count
action union
action filter_type
action find_reverse
entity peptide ABC transporter permease    TTHA1337
relation encodes
type nucleic acid sequence
action filter_type
action find_reverse
entity protein
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'peptide ABC transporter permease    TTHA1337'] [{'concept': 'nucleic acid sequence'}, 'encodes', 'protein']
SELECT DISTINCT ( COUNT ( ?t ) AS ?y ) WHERE { ?t property:encodes ?r . VALUES ( ?r ) { ( resource:peptide_ABC_transporter_permease____TTHA1337 ) ( resource:protein ) } }
[]