Simple Question (Direct)
Simple Question
Q22292740
P702
Q863908
USER
Which nucleic acid sequence encodes transcription termination factor Rho    TDE1503 ?
(Q22292740,P702,c(Q863908))
action filter_type
action find
entity Q22292740
relation P702
type Q863908
['Q22292740', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?d WHERE { resource:Q22292740 property:P702 ?d . ?d rdf:type ontology:Q863908 }
transcription termination factor Rho    TDE1503
action filter_type
action find
entity transcription termination factor Rho    TDE1503
relation encoded by
type nucleic acid sequence
['transcription termination factor Rho    TDE1503', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?d WHERE { resource:transcription_termination_factor_Rho____TDE1503 property:encoded_by ?d . ?d rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q22288707
SYSTEM
transcription termination factor Rho    TDE1503
Q22288707
(Q22292740,P702,c(Q863908))
action filter_type
action find
entity Q22292740
relation P702
type Q863908
En transcription termination factor Rho TDE1503 encodes transcription termination factor Rho TDE1503
['Q22292740', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?d WHERE { resource:Q22292740 property:P702 ?d . ?d rdf:type ontology:Q863908 }
transcription termination factor Rho    TDE1503
En transcription termination factor Rho TDE1503 encodes transcription termination factor Rho TDE1503
transcription termination factor Rho    TDE1503
action filter_type
action find
entity transcription termination factor Rho    TDE1503
relation encoded by
type nucleic acid sequence
['transcription termination factor Rho    TDE1503', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?d WHERE { resource:transcription_termination_factor_Rho____TDE1503 property:encoded_by ?d . ?d rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q22288707
P703
Q16521
USER
Where is that nucleic acid sequence found ?
(Q22288707,P703,c(Q16521))
action filter_type
action find
entity Q22288707
relation P703
type Q16521
['Q22288707', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?j WHERE { resource:Q22288707 property:P703 ?j . ?j rdf:type ontology:Q16521 }
transcription termination factor Rho    TDE1503
action filter_type
action find
entity transcription termination factor Rho    TDE1503
relation found in taxon
type taxon
['transcription termination factor Rho    TDE1503', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?j WHERE { resource:transcription_termination_factor_Rho____TDE1503 property:found_in_taxon ?j . ?j rdf:type ontology:taxon }
[]
taxon
Q21065228
SYSTEM
Treponema denticola ATCC 35405
Q21065228
(Q22288707,P703,c(Q16521))
action filter_type
action find
entity Q22288707
relation P703
type Q16521
That nucleic acid sequence is found in [ANSWER]
['Q22288707', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?j WHERE { resource:Q22288707 property:P703 ?j . ?j rdf:type ontology:Q16521 }
Treponema denticola ATCC 35405
That nucleic acid sequence is found in Treponema denticola ATCC 35405
Treponema denticola ATCC 35405
action filter_type
action find
entity transcription termination factor Rho    TDE1503
relation found in taxon
type taxon
['transcription termination factor Rho    TDE1503', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?j WHERE { resource:transcription_termination_factor_Rho____TDE1503 property:found_in_taxon ?j . ?j rdf:type ontology:taxon }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Single entity type
Q21251980
P566
Q82799 Q16521
USER
How many names are a basionyms of greater number of taxons than Atriplex minuscula ?
(c(Q16521),P566,c(Q82799))
action count
action greater
action find_reverse_tuple_counts
relation P566
type Q82799
type Q16521
action count
action filter_type
action find
entity Q21251980
relation P566
type Q82799
[{'concept': 'Q16521'}, 'P566', {'concept': 'Q82799'}]
SELECT DISTINCT ( COUNT ( ?q ) AS ?a ) WHERE { { SELECT DISTINCT ?q ( COUNT ( ?g ) AS ?l ) WHERE { ?g property:P566 ?q . ?g rdf:type ontology:Q16521 . ?q rdf:type ontology:Q82799 } GROUP BY ?q } . { SELECT DISTINCT ( COUNT ( ?x ) AS ?b ) WHERE { ?x rdf:type ontology:Q82799 . resource:Q21251980 property:P566 ?x } } . FILTER ( ?l > ?b ) }
Atriplex minuscula
action count
action greater
action find_reverse_tuple_counts
relation basionym
type name
type taxon
action count
action filter_type
action find
entity Atriplex minuscula
relation basionym
type name
[{'concept': 'taxon'}, 'basionym', {'concept': 'name'}]
SELECT DISTINCT ( COUNT ( ?q ) AS ?a ) WHERE { { SELECT DISTINCT ?q ( COUNT ( ?g ) AS ?l ) WHERE { ?g property:basionym ?q . ?g rdf:type ontology:taxon . ?q rdf:type ontology:name } GROUP BY ?q } . { SELECT DISTINCT ( COUNT ( ?x ) AS ?b ) WHERE { ?x rdf:type ontology:name . resource:Atriplex_minuscula property:basionym ?x } } . FILTER ( ?l > ?b ) }
[]
name taxon
SYSTEM
2
Q11079289 Q17244388
(c(Q16521),P566,c(Q82799))
action count
action greater
action find_reverse_tuple_counts
relation P566
type Q82799
type Q16521
action count
action filter_type
action find
entity Q21251980
relation P566
type Q82799
[ANSWER]
[{'concept': 'Q16521'}, 'P566', {'concept': 'Q82799'}]
SELECT DISTINCT ( COUNT ( ?q ) AS ?a ) WHERE { { SELECT DISTINCT ?q ( COUNT ( ?g ) AS ?l ) WHERE { ?g property:P566 ?q . ?g rdf:type ontology:Q16521 . ?q rdf:type ontology:Q82799 } GROUP BY ?q } . { SELECT DISTINCT ( COUNT ( ?x ) AS ?b ) WHERE { ?x rdf:type ontology:Q82799 . resource:Q21251980 property:P566 ?x } } . FILTER ( ?l > ?b ) }
Salsola brachiata Atriplex portulacoides
2
action count
action greater
action find_reverse_tuple_counts
relation basionym
type name
type taxon
action count
action filter_type
action find
entity Atriplex minuscula
relation basionym
type name
[{'concept': 'taxon'}, 'basionym', {'concept': 'name'}]
SELECT DISTINCT ( COUNT ( ?q ) AS ?a ) WHERE { { SELECT DISTINCT ?q ( COUNT ( ?g ) AS ?l ) WHERE { ?g property:basionym ?q . ?g rdf:type ontology:taxon . ?q rdf:type ontology:name } GROUP BY ?q } . { SELECT DISTINCT ( COUNT ( ?x ) AS ?b ) WHERE { ?x rdf:type ontology:name . resource:Atriplex_minuscula property:basionym ?x } } . FILTER ( ?l > ?b ) }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q22288707
P688
Q181394
USER
Which nutrient is encoded by transcription termination factor Rho    TDE1503 ?
(Q22288707,P688,c(Q181394))
action filter_type
action find
entity Q22288707
relation P688
type Q181394
['Q22288707', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?c WHERE { resource:Q22288707 property:P688 ?c . ?c rdf:type ontology:Q181394 }
transcription termination factor Rho    TDE1503
action filter_type
action find
entity transcription termination factor Rho    TDE1503
relation encodes
type nutrient
['transcription termination factor Rho    TDE1503', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?c WHERE { resource:transcription_termination_factor_Rho____TDE1503 property:encodes ?c . ?c rdf:type ontology:nutrient }
[]
nutrient
Q22292740
SYSTEM
transcription termination factor Rho    TDE1503
Q22292740
(Q22288707,P688,c(Q181394))
action filter_type
action find
entity Q22288707
relation P688
type Q181394
Transcription termination factor Rho TDE1503 is encoded by transcription termination factor Rho TDE1503
['Q22288707', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?c WHERE { resource:Q22288707 property:P688 ?c . ?c rdf:type ontology:Q181394 }
transcription termination factor Rho    TDE1503
Transcription termination factor Rho TDE1503 is encoded by transcription termination factor Rho TDE1503
transcription termination factor Rho    TDE1503
action filter_type
action find
entity transcription termination factor Rho    TDE1503
relation encodes
type nutrient
['transcription termination factor Rho    TDE1503', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?c WHERE { resource:transcription_termination_factor_Rho____TDE1503 property:encodes ?c . ?c rdf:type ontology:nutrient }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Single entity type
Q22274791
P682
Q1057 Q181394
USER
How many metabolic processes are a biological processes that approximately the same number of nutrients are involved in as organic cyclic compound metabolic process ?
(c(Q181394),P682,c(Q1057))
action count
action approx
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
action count
action filter_type
action find
entity Q22274791
relation P682
type Q1057
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ( COUNT ( ?x ) AS ?w ) WHERE { { SELECT DISTINCT ?x ( COUNT ( ?h ) AS ?l ) WHERE { ?h property:P682 ?x . ?x rdf:type ontology:Q1057 . ?h rdf:type ontology:Q181394 } GROUP BY ?x } . FILTER ( ?l = ?g ) . { SELECT DISTINCT ( COUNT ( ?f ) AS ?g ) WHERE { ?f rdf:type ontology:Q1057 . resource:Q22274791 property:P682 ?f } } }
organic cyclic compound metabolic process
action count
action approx
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
action count
action filter_type
action find
entity organic cyclic compound metabolic process
relation biological process
type metabolic process
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ( COUNT ( ?x ) AS ?w ) WHERE { { SELECT DISTINCT ?x ( COUNT ( ?h ) AS ?l ) WHERE { ?h property:biological_process ?x . ?x rdf:type ontology:metabolic_process . ?h rdf:type ontology:nutrient } GROUP BY ?x } . FILTER ( ?l = ?g ) . { SELECT DISTINCT ( COUNT ( ?f ) AS ?g ) WHERE { ?f rdf:type ontology:metabolic_process . resource:organic_cyclic_compound_metabolic_process property:biological_process ?f } } }
[]
metabolic process nutrient
SYSTEM
76
Q14864889 Q14907628 Q14913194 Q22274727 Q22251129 Q14905693 Q14860777 Q21134382 Q21097138 Q14819379 Q21759902 Q21133617 Q133895 Q21157940 Q21116483 Q14863351 Q21102358 Q21114210 Q14907178 Q21121151 Q14880758 Q21761098 Q22275051 Q21100626 Q14913439 Q14916189 Q21159531 Q21111970 Q898365 Q22274640 Q22279483 Q21119973 Q14865941 Q22282595 Q14907180 Q14907181 Q14905125 Q21096256 Q14863432 Q14902250 Q21124879 Q14909347 Q15313450 Q179924 Q21101220 Q21095286 Q14863986 Q14358591 Q838181 Q21116485 Q14859896 Q21103172 Q22276072 Q14914233 Q14897831 Q14645736 Q14864262 Q14859628 Q14819787 Q21119193 Q22274791 Q14819781 Q22279537 Q22283508 Q14327719 Q22279533 Q21124620 Q14860507 Q21112195 Q14890104 Q14864417 Q14864414 Q21759328 Q900386 Q14912265 Q21760838
(c(Q181394),P682,c(Q1057))
action count
action approx
action find_reverse_tuple_counts
relation P682
type Q1057
type Q181394
action count
action filter_type
action find
entity Q22274791
relation P682
type Q1057
[ANSWER]
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ( COUNT ( ?x ) AS ?w ) WHERE { { SELECT DISTINCT ?x ( COUNT ( ?h ) AS ?l ) WHERE { ?h property:P682 ?x . ?x rdf:type ontology:Q1057 . ?h rdf:type ontology:Q181394 } GROUP BY ?x } . FILTER ( ?l = ?g ) . { SELECT DISTINCT ( COUNT ( ?f ) AS ?g ) WHERE { ?f rdf:type ontology:Q1057 . resource:Q22274791 property:P682 ?f } } }
cellular aromatic compound metabolic process multicellular organism metabolic process cellular ketone body metabolic process secondary metabolic process proteolysis in other organism translational initiation hormone biosynthetic process cofactor metabolic process cellular aldehyde metabolic process one-carbon metabolic process carbon fixation actin modification tricarboxylic acid cycle nitrobenzene metabolic process lymphotoxin A biosynthetic process signal transduction by protein phosphorylation sulfur compound metabolic process regulation of translational initiation by eIF2 alpha dephosphorylation interleukin-2 biosynthetic process reactive nitrogen species metabolic process nucleobase-containing compound metabolic process photosynthesis halogenated hydrocarbon metabolic process peptidyl-lysine modification to peptidyl-hypusine organophosphate metabolic process organic acid metabolic process selenium compound metabolic process reactive oxygen species biosynthetic process glycosylation cellular biosynthetic process cellular macromolecule metabolic process oxygen metabolic process connective tissue growth factor biosynthetic process ketone body metabolic process interleukin-13 biosynthetic process granulocyte macrophage colony-stimulating factor biosynthetic process neurotransmitter metabolic process cellular carbohydrate metabolic process reactive oxygen species metabolic process telomere maintenance via semi-conservative replication interleukin-8 biosynthetic process flavonoid metabolic process methylation-dependent chromatin silencing bioluminescence wax biosynthetic process amyloid fibril formation hormone catabolic process xenobiotic metabolic process respiratory burst interleukin-6 biosynthetic process cellular amino acid metabolic process DNA protection glycosyl compound metabolic process phosphatidic acid metabolic process isotype switching thyroid hormone metabolic process protein metabolic process cellular lipid metabolic process peptide hormone processing cellular modified amino acid metabolic process organic cyclic compound metabolic process generation of precursor metabolites and energy viral RNA genome replication IRES-dependent viral translational initiation small molecule metabolic process transposon integration transposition, DNA-mediated receptor internalization patched ligand maturation toxin metabolic process heterocycle metabolic process drug metabolic process cellular catabolic process demethylation cellular ketone metabolic process phosphorus metabolic process
76
action count
action approx
action find_reverse_tuple_counts
relation biological process
type metabolic process
type nutrient
action count
action filter_type
action find
entity organic cyclic compound metabolic process
relation biological process
type metabolic process
[{'concept': 'nutrient'}, 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ( COUNT ( ?x ) AS ?w ) WHERE { { SELECT DISTINCT ?x ( COUNT ( ?h ) AS ?l ) WHERE { ?h property:biological_process ?x . ?x rdf:type ontology:metabolic_process . ?h rdf:type ontology:nutrient } GROUP BY ?x } . FILTER ( ?l = ?g ) . { SELECT DISTINCT ( COUNT ( ?f ) AS ?g ) WHERE { ?f rdf:type ontology:metabolic_process . resource:organic_cyclic_compound_metabolic_process property:biological_process ?f } } }
[]
Comparative Reasoning (Count) (All)
Comparative|Count over More/Less|Single entity type
Q22284496
P682
Q3249551 Q181394
USER
How many processes are greater number of nutrients involved in than biological regulation ?
(c(Q181394),P682,c(Q3249551))
action count
action greater
action find_reverse_tuple_counts
relation P682
type Q3249551
type Q181394
action count
action filter_type
action find
entity Q22284496
relation P682
type Q3249551
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q3249551'}]
SELECT DISTINCT ( COUNT ( ?q ) AS ?t ) WHERE { { SELECT DISTINCT ?q ( COUNT ( ?p ) AS ?b ) WHERE { ?p property:P682 ?q . ?q rdf:type ontology:Q3249551 . ?p rdf:type ontology:Q181394 } GROUP BY ?q } . { SELECT DISTINCT ( COUNT ( ?a ) AS ?r ) WHERE { resource:Q22284496 property:P682 ?a . ?a rdf:type ontology:Q3249551 } } . FILTER ( ?b > ?r ) }
biological regulation
action count
action greater
action find_reverse_tuple_counts
relation biological process
type process
type nutrient
action count
action filter_type
action find
entity biological regulation
relation biological process
type process
[{'concept': 'nutrient'}, 'biological process', {'concept': 'process'}]
SELECT DISTINCT ( COUNT ( ?q ) AS ?t ) WHERE { { SELECT DISTINCT ?q ( COUNT ( ?p ) AS ?b ) WHERE { ?p property:biological_process ?q . ?q rdf:type ontology:process . ?p rdf:type ontology:nutrient } GROUP BY ?q } . { SELECT DISTINCT ( COUNT ( ?a ) AS ?r ) WHERE { resource:biological_regulation property:biological_process ?a . ?a rdf:type ontology:process } } . FILTER ( ?b > ?r ) }
[]
process nutrient
SYSTEM
13
Q22269718 Q306383 Q14820058 Q9332 Q22293230 Q14873025 Q14916317 Q14859560 Q1057 Q14865172 Q14885910 Q14864472 Q162925
(c(Q181394),P682,c(Q3249551))
action count
action greater
action find_reverse_tuple_counts
relation P682
type Q3249551
type Q181394
action count
action filter_type
action find
entity Q22284496
relation P682
type Q3249551
[ANSWER]
[{'concept': 'Q181394'}, 'P682', {'concept': 'Q3249551'}]
SELECT DISTINCT ( COUNT ( ?q ) AS ?t ) WHERE { { SELECT DISTINCT ?q ( COUNT ( ?p ) AS ?b ) WHERE { ?p property:P682 ?q . ?q rdf:type ontology:Q3249551 . ?p rdf:type ontology:Q181394 } GROUP BY ?q } . { SELECT DISTINCT ( COUNT ( ?a ) AS ?r ) WHERE { resource:Q22284496 property:P682 ?a . ?a rdf:type ontology:Q3249551 } } . FILTER ( ?b > ?r ) }
locomotion G1/S transition of mitotic cell cycle growth behavior developmental process cellular process immune system process response to stimulus metabolic process signaling reproductive process rhythmic process meiotic nuclear division
13
action count
action greater
action find_reverse_tuple_counts
relation biological process
type process
type nutrient
action count
action filter_type
action find
entity biological regulation
relation biological process
type process
[{'concept': 'nutrient'}, 'biological process', {'concept': 'process'}]
SELECT DISTINCT ( COUNT ( ?q ) AS ?t ) WHERE { { SELECT DISTINCT ?q ( COUNT ( ?p ) AS ?b ) WHERE { ?p property:biological_process ?q . ?q rdf:type ontology:process . ?p rdf:type ontology:nutrient } GROUP BY ?q } . { SELECT DISTINCT ( COUNT ( ?a ) AS ?r ) WHERE { resource:biological_regulation property:biological_process ?a . ?a rdf:type ontology:process } } . FILTER ( ?b > ?r ) }
[]