Simple Question (Direct)
Simple Question
Q22232177
P703
Q631147
USER
Which taxon does transcriptional regulator    Rv0386 belong to ?
(Q22232177,P703,c(Q631147))
action filter_type
action find
entity Q22232177
relation P703
type Q631147
['Q22232177', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?c WHERE { resource:Q22232177 property:P703 ?c . ?c rdf:type ontology:Q631147 }
transcriptional regulator    Rv0386
action filter_type
action find
entity transcriptional regulator    Rv0386
relation found in taxon
type infraspecific name
['transcriptional regulator    Rv0386', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?c WHERE { resource:transcriptional_regulator____Rv0386 property:found_in_taxon ?c . ?c rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102987
SYSTEM
Mycobacterium tuberculosis H37Rv
Q21102987
(Q22232177,P703,c(Q631147))
action filter_type
action find
entity Q22232177
relation P703
type Q631147
Transcriptional regulator Rv0386 belongs to [ANSWER]
['Q22232177', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?c WHERE { resource:Q22232177 property:P703 ?c . ?c rdf:type ontology:Q631147 }
Mycobacterium tuberculosis H37Rv
Transcriptional regulator Rv0386 belongs to Mycobacterium tuberculosis H37Rv
Mycobacterium tuberculosis H37Rv
action filter_type
action find
entity transcriptional regulator    Rv0386
relation found in taxon
type infraspecific name
['transcriptional regulator    Rv0386', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?c WHERE { resource:transcriptional_regulator____Rv0386 property:found_in_taxon ?c . ?c rdf:type ontology:infraspecific_name }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count over Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q181394 Q8386 Q181394
USER
How many nutrients do approximately 8 drugs or nutrients interact with ?
(c(Q8386)|c(Q181394),P129,c(Q181394))
action count
action approx
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
value 8
[[{'concept': 'Q8386'}, {'concept': 'Q181394'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?c ) AS ?e ) WHERE { { SELECT DISTINCT ?c ( COUNT ( ?j ) AS ?f ) WHERE { { ?j property:P129 ?c . ?c rdf:type ontology:Q181394 . ?j rdf:type ontology:Q8386 } UNION { ?j property:P129 ?c . ?c rdf:type ontology:Q181394 . ?j rdf:type ontology:Q181394 } } GROUP BY ?c } . FILTER ( ?f = 8 ) }
action count
action approx
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
value 8
[[{'concept': 'drug'}, {'concept': 'nutrient'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?c ) AS ?e ) WHERE { { SELECT DISTINCT ?c ( COUNT ( ?j ) AS ?f ) WHERE { { ?j property:physically_interacts_with ?c . ?c rdf:type ontology:nutrient . ?j rdf:type ontology:drug } UNION { ?j property:physically_interacts_with ?c . ?c rdf:type ontology:nutrient . ?j rdf:type ontology:nutrient } } GROUP BY ?c } . FILTER ( ?f = 8 ) }
[]
nutrient drug nutrient
SYSTEM
160
Q21116154 Q21173427 Q4847910 Q2271947 Q21109971 Q7671480 Q423701 Q21497881 Q21173164 Q21120422 Q21120424 Q417057 Q21154358 Q1499998 Q7553281 Q21108624 Q420470 Q424440 Q21172390 Q1486720 Q4789588 Q21107843 Q4789584 Q1084878 Q415287 Q7671479 Q21136123 Q7169506 Q415607 Q21109365 Q21107439 Q15323278 Q21103155 Q21109974 Q5038044 Q21109218 Q21122995 Q415976 Q21496563 Q21123244 Q21107890 Q410798 Q21103207 Q254943 Q21119828 Q6414726 Q4847907 Q21108482 Q7671495 Q21097491 Q21111162 Q21116946 Q21114332 Q21982210 Q6901317 Q416601 Q5401858 Q5401857 Q22676679 Q21173381 Q21497890 Q21116162 Q21116164 Q417801 Q21120420 Q5773155 Q21173310 Q7390898 Q21111803 Q21112690 Q21120423 Q22679015 Q21125248 Q21115334 Q14905969 Q21118353 Q21175110 Q21173406 Q21119818 Q909409 Q5513985 Q21108338 Q409867 Q21114578 Q3454525 Q21114576 Q21131500 Q21498865 Q21123247 Q128861 Q21132004 Q12746111 Q21119156 Q2819188 Q21119157 Q21122493 Q7671468 Q4897175 Q21102111 Q412214 Q7673856 Q21103198 Q21132917 Q21132915 Q6592965 Q905000 Q21115961 Q21115962 Q21115965 Q21105176 Q14912057 Q8083989 Q21102075 Q21497878 Q5773160 Q21111833 Q21122997 Q3062781 Q21125253 Q12746120 Q21138907 Q5629167 Q21115815 Q21115816 Q21115819 Q21121233 Q21110532 Q21159525 Q21108125 Q5446453 Q7834290 Q21114582 Q21497939 Q3454531 Q21497937 Q21497936 Q21109462 Q904925 Q3415811 Q424401 Q5009781 Q21173206 Q21173207 Q904241 Q21130911 Q587961 Q22676802 Q21096394 Q21496564 Q7671477 Q21127141 Q21111265 Q21109359 Q6592976 Q21102146 Q21121816 Q21984383 Q5201201 Q5520260 Q21134814
(c(Q8386)|c(Q181394),P129,c(Q181394))
action count
action approx
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
value 8
[ANSWER]
[[{'concept': 'Q8386'}, {'concept': 'Q181394'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?c ) AS ?e ) WHERE { { SELECT DISTINCT ?c ( COUNT ( ?j ) AS ?f ) WHERE { { ?j property:P129 ?c . ?c rdf:type ontology:Q181394 . ?j rdf:type ontology:Q8386 } UNION { ?j property:P129 ?c . ?c rdf:type ontology:Q181394 . ?j rdf:type ontology:Q181394 } } GROUP BY ?c } . FILTER ( ?f = 8 ) }
Adenosine receptor A3 Histone deacetylase 9 Muscarinic acetylcholine receptor M2 Sodium-dependent dopamine transporter Cation channel sperm-associated protein 4 Transient receptor potential cation channel subfamily M member 4 Coagulation factor X G protein-activated inward rectifier potassium channel 4 Carbonic anhydrase 1 Prostaglandin E2 receptor EP4 subtype Prostaglandin E2 receptor EP2 subtype Vitamin D3 receptor Histone deacetylase 3 Voltage-dependent L-type calcium channel subunit alpha-1C Solute carrier family 12 member 3 Platelet-derived growth factor receptor beta Cystic fibrosis transmembrane conductance regulator Cytochrome P450 3A4 Vascular endothelial growth factor receptor 2 Glutamate receptor 3 Vasopressin V2 receptor Potassium voltage-gated channel subfamily A member 10 Vasopressin V1a receptor Peroxisome proliferator-activated receptor gamma Aromatase Transient receptor potential cation channel subfamily M member 3 Solute carrier organic anion transporter family member 2B1 Peroxisome proliferator-activated receptor alpha 3-hydroxy-3-methylglutaryl-coenzyme A reductase 5-hydroxytryptamine receptor 4 Farnesyl pyrophosphate synthase Transient receptor potential cation channel subfamily A member 1 Glycine receptor subunit alpha-1 Cation channel sperm-associated protein 3 Carbonic anhydrase 4 Serine/threonine-protein kinase B-raf Melatonin receptor type 1A Proto-oncogene tyrosine-protein kinase receptor Ret Potassium voltage-gated channel subfamily C member 1 cGMP-inhibited 3',5'-cyclic phosphodiesterase B Potassium voltage-gated channel subfamily A member 7 cGMP-specific 3',5'-cyclic phosphodiesterase G-protein coupled bile acid receptor 1 Retinoic acid receptor alpha ATP-sensitive inward rectifier potassium channel 8 ATP-sensitive inward rectifier potassium channel 11 Muscarinic acetylcholine receptor M4 DNA topoisomerase 2-alpha Transient receptor potential cation channel subfamily M member 8 Sodium/potassium-transporting ATPase subunit alpha-1 Acetylcholine receptor subunit alpha Carbonic anhydrase 12 Tubulin beta chain Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1 Amine oxidase [flavin-containing] A Androgen receptor Estrogen receptor Estrogen receptor beta Acetylcholinesterase Histone deacetylase 6 ATP-sensitive inward rectifier potassium channel 8 Adenosine receptor A2a Adenosine receptor A2b Extracellular calcium-sensing receptor Prostaglandin E2 receptor EP1 subtype Histone deacetylase 2 Endothelin B receptor Sodium/glucose cotransporter 2 Voltage-dependent L-type calcium channel subunit alpha-1S fMet-Leu-Phe receptor Prostaglandin E2 receptor EP3 subtype Cholinesterase Solute carrier organic anion transporter family member 1B3 Delta-type opioid receptor Potassium voltage-gated channel subfamily A member 1 Vascular endothelial growth factor receptor 3 Vitamin K epoxide reductase complex subunit 1 Histone deacetylase 8 Intermediate conductance calcium-activated potassium channel protein 4 Mast/stem cell growth factor receptor Kit Gonadotropin-releasing hormone receptor Ribonucleoside-diphosphate reductase subunit M2 Nuclear receptor subfamily 1 group I member 2 Gamma-aminobutyric acid receptor subunit alpha-3 Progesterone receptor Gamma-aminobutyric acid receptor subunit alpha-5 D(1B) dopamine receptor Beta-3 adrenergic receptor cGMP-inhibited 3',5'-cyclic phosphodiesterase A Angiotensin-converting enzyme Endothelin-1 receptor Motilin receptor Inosine-5'-monophosphate dehydrogenase 2 Type-1 angiotensin II receptor Inosine-5'-monophosphate dehydrogenase 1 Prostaglandin F2-alpha receptor Short transient receptor potential channel 5 Beta-3 adrenergic receptor Acid-sensing ion channel 3 Dipeptidyl peptidase 4 Substance-P receptor G-protein coupled receptor family C group 6 member A Carbonic anhydrase 14 Carbonic anhydrase 7 Retinoic acid receptor gamma Potassium voltage-gated channel subfamily H member 2 Glutamate receptor 1 Glutamate receptor 2 Glutamate receptor 4 Anoctamin-1 ATP-sensitive inward rectifier potassium channel 11 Kappa-type opioid receptor Acid-sensing ion channel 1 G protein-activated inward rectifier potassium channel 2 Histone deacetylase 5 Cation channel sperm-associated protein 2 Melatonin receptor type 1B Adenosine receptor A1 Solute carrier organic anion transporter family member 1B1 Muscarinic acetylcholine receptor M5 Ryanodine receptor 1 Histone deacetylase 1 Glutamate receptor ionotropic, NMDA 2A Glutamate receptor ionotropic, NMDA 2B Glutamate receptor ionotropic, NMDA 2C Ribonucleoside-diphosphate reductase large subunit Potassium voltage-gated channel subfamily H member 1 Ryanodine receptor 3 5-hydroxytryptamine receptor 3A Fibroblast growth factor receptor 1 Transient receptor potential cation channel subfamily A member 1 Gamma-aminobutyric acid receptor subunit alpha-2 5-hydroxytryptamine receptor 7 Mineralocorticoid receptor 5-hydroxytryptamine receptor 5A 5-hydroxytryptamine receptor 3A Amine oxidase [flavin-containing] B Cytochrome P450 11B1, mitochondrial Ryanodine receptor 2 Epidermal growth factor receptor Receptor-type tyrosine-protein kinase FLT3 Histone deacetylase 4 Histone deacetylase 7 Sodium/glucose cotransporter 1 Glutamate receptor ionotropic, NMDA 2D Tyrosine-protein kinase ABL1 Thymidylate synthase Potassium voltage-gated channel subfamily A member 5 Potassium voltage-gated channel subfamily A member 7 Transient receptor potential cation channel subfamily M member 2 Sodium-coupled monocarboxylate transporter 1 Cation channel sperm-associated protein 1 5-hydroxytryptamine receptor 5A Retinoic acid receptor beta Voltage-dependent L-type calcium channel subunit alpha-1D P2Y purinoceptor 13 Voltage-dependent L-type calcium channel subunit alpha-1F Cysteinyl leukotriene receptor 1 Gamma-aminobutyric acid receptor subunit alpha-1 Equilibrative nucleoside transporter 4
160
action count
action approx
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
value 8
[[{'concept': 'drug'}, {'concept': 'nutrient'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?c ) AS ?e ) WHERE { { SELECT DISTINCT ?c ( COUNT ( ?j ) AS ?f ) WHERE { { ?j property:physically_interacts_with ?c . ?c rdf:type ontology:nutrient . ?j rdf:type ontology:drug } UNION { ?j property:physically_interacts_with ?c . ?c rdf:type ontology:nutrient . ?j rdf:type ontology:nutrient } } GROUP BY ?c } . FILTER ( ?f = 8 ) }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q22575262 Q22232177
P681
Q5058355
USER
Which cellular components are the cell components of transcriptional regulator    Rv0386 or putative F1 chaperone protein    YPMT1.82 ?
OR((Q22232177,P681,c(Q5058355)), (Q22575262,P681,c(Q5058355)))
action filter_type
action union
action find
entity Q22232177
relation P681
action find
entity Q22575262
relation P681
type Q5058355
{'OR': [['Q22232177', 'P681', {'concept': 'Q5058355'}], ['Q22575262', 'P681', {'concept': 'Q5058355'}]]}
SELECT DISTINCT ?q WHERE { { VALUES ( ?e ) { ( resource:Q22232177 ) ( resource:Q22575262 ) } . ?e property:P681 ?q } . ?q rdf:type ontology:Q5058355 }
putative F1 chaperone protein    YPMT1.82 transcriptional regulator    Rv0386
action filter_type
action union
action find
entity transcriptional regulator    Rv0386
relation cell component
action find
entity putative F1 chaperone protein    YPMT1.82
relation cell component
type cellular component
{'OR': [['transcriptional regulator    Rv0386', 'cell component', {'concept': 'cellular component'}], ['putative F1 chaperone protein    YPMT1.82', 'cell component', {'concept': 'cellular component'}]]}
SELECT DISTINCT ?q WHERE { { VALUES ( ?e ) { ( resource:transcriptional_regulator____Rv0386 ) ( resource:putative_F1_chaperone_protein____YPMT1.82 ) } . ?e property:cell_component ?q } . ?q rdf:type ontology:cellular_component }
[]
cellular component
Q29548 Q21198990 Q3824358
SYSTEM
plasma membrane, periplasmic space, intracellular
Q29548 Q21198990 Q3824358
OR((Q22232177,P681,c(Q5058355)), (Q22575262,P681,c(Q5058355)))
action filter_type
action union
action find
entity Q22232177
relation P681
action find
entity Q22575262
relation P681
type Q5058355
The [ANSWERS] are the cell components of transcriptional regulator Rv0386 or putative F1 chaperone protein YPMT1.82
{'OR': [['Q22232177', 'P681', {'concept': 'Q5058355'}], ['Q22575262', 'P681', {'concept': 'Q5058355'}]]}
SELECT DISTINCT ?q WHERE { { VALUES ( ?e ) { ( resource:Q22232177 ) ( resource:Q22575262 ) } . ?e property:P681 ?q } . ?q rdf:type ontology:Q5058355 }
plasma membrane periplasmic space intracellular
The plasma membrane, periplasmic space and intracellular are the cell components of transcriptional regulator Rv0386 or putative F1 chaperone protein YPMT1.82
plasma membrane periplasmic space intracellular
action filter_type
action union
action find
entity transcriptional regulator    Rv0386
relation cell component
action find
entity putative F1 chaperone protein    YPMT1.82
relation cell component
type cellular component
{'OR': [['transcriptional regulator    Rv0386', 'cell component', {'concept': 'cellular component'}], ['putative F1 chaperone protein    YPMT1.82', 'cell component', {'concept': 'cellular component'}]]}
SELECT DISTINCT ?q WHERE { { VALUES ( ?e ) { ( resource:transcriptional_regulator____Rv0386 ) ( resource:putative_F1_chaperone_protein____YPMT1.82 ) } . ?e property:cell_component ?q } . ?q rdf:type ontology:cellular_component }
[]
Comparative Reasoning (All)
Comparative|More/Less|Mult. entity type
Q21172341
P361
Q15989253 Q223557 Q5058355
USER
Which cellular components are a component of more number of parts and physical objects than outer dense plaque of desmosome ?
(c(Q5058355),P361,c(Q15989253)|c(Q223557))
action greater
action union
action find_tuple_counts
relation P361
type Q5058355
type Q15989253
action find_tuple_counts
relation P361
type Q5058355
type Q223557
action count
action filter_multi_types
action find
entity Q21172341
relation P361
type Q15989253
type Q223557
[{'concept': 'Q5058355'}, 'P361', [{'concept': 'Q15989253'}, {'concept': 'Q223557'}]]
SELECT DISTINCT ?n WHERE { { SELECT DISTINCT ( COUNT ( ?s ) AS ?k ) WHERE { resource:Q21172341 property:P361 ?s . { VALUES ( ?r ) { ( ontology:Q15989253 ) ( ontology:Q223557 ) } . ?s rdf:type ?r } } } . FILTER ( ?m > ?k ) . { SELECT DISTINCT ?n ( COUNT ( ?g ) AS ?m ) WHERE { { ?n property:P361 ?g . ?n rdf:type ontology:Q5058355 . ?g rdf:type ontology:Q15989253 } UNION { ?n rdf:type ontology:Q5058355 . ?g rdf:type ontology:Q223557 . ?n property:P361 ?g } } GROUP BY ?n } }
outer dense plaque of desmosome
action greater
action union
action find_tuple_counts
relation part of
type cellular component
type part
action find_tuple_counts
relation part of
type cellular component
type physical object
action count
action filter_multi_types
action find
entity outer dense plaque of desmosome
relation part of
type part
type physical object
[{'concept': 'cellular component'}, 'part of', [{'concept': 'part'}, {'concept': 'physical object'}]]
SELECT DISTINCT ?n WHERE { { SELECT DISTINCT ( COUNT ( ?s ) AS ?k ) WHERE { resource:outer_dense_plaque_of_desmosome property:part_of ?s . { VALUES ( ?r ) { ( ontology:part ) ( ontology:physical_object ) } . ?s rdf:type ?r } } } . FILTER ( ?m > ?k ) . { SELECT DISTINCT ?n ( COUNT ( ?g ) AS ?m ) WHERE { { ?n property:part_of ?g . ?n rdf:type ontology:cellular_component . ?g rdf:type ontology:part } UNION { ?n rdf:type ontology:cellular_component . ?g rdf:type ontology:physical_object . ?n property:part_of ?g } } GROUP BY ?n } }
[]
part physical object cellular component
Q14912978 Q22329076 Q22326356
SYSTEM
mitochondrial nucleoid, plastid nucleoid, membrane protein complex
Q14912978 Q22326356 Q22327622 Q22327479 Q22327475 Q22326870 Q14914004 Q15320191 Q22328035 Q22329249 Q22327061 Q22326951 Q22328884 Q22328762 Q22327083 Q14873267 Q22329076 Q2914458 Q193825 Q22327423
(c(Q5058355),P361,c(Q15989253)|c(Q223557))
action greater
action union
action find_tuple_counts
relation P361
type Q5058355
type Q15989253
action find_tuple_counts
relation P361
type Q5058355
type Q223557
action count
action filter_multi_types
action find
entity Q21172341
relation P361
type Q15989253
type Q223557
The [ANSWERS] are a component of more number of parts and physical objects than outer dense plaque of desmosome
[{'concept': 'Q5058355'}, 'P361', [{'concept': 'Q15989253'}, {'concept': 'Q223557'}]]
SELECT DISTINCT ?n WHERE { { SELECT DISTINCT ( COUNT ( ?s ) AS ?k ) WHERE { resource:Q21172341 property:P361 ?s . { VALUES ( ?r ) { ( ontology:Q15989253 ) ( ontology:Q223557 ) } . ?s rdf:type ?r } } } . FILTER ( ?m > ?k ) . { SELECT DISTINCT ?n ( COUNT ( ?g ) AS ?m ) WHERE { { ?n property:P361 ?g . ?n rdf:type ontology:Q5058355 . ?g rdf:type ontology:Q15989253 } UNION { ?n rdf:type ontology:Q5058355 . ?g rdf:type ontology:Q223557 . ?n property:P361 ?g } } GROUP BY ?n } }
mitochondrial nucleoid membrane protein complex side of membrane presynapse postsynapse DAPK1-calmodulin complex synaptic membrane synaptic cleft organelle lumen virion nucleoid extracellular isoamylase complex oxidoreductase complex organellar ribosome Dxr protein complex PTEN phosphatase complex cell-cell junction plastid nucleoid extracellular space extracellular matrix extracellular organelle
The mitochondrial nucleoid, plastid nucleoid and membrane protein complex are a component of more number of parts and physical objects than outer dense plaque of desmosome
mitochondrial nucleoid plastid nucleoid membrane protein complex
action greater
action union
action find_tuple_counts
relation part of
type cellular component
type part
action find_tuple_counts
relation part of
type cellular component
type physical object
action count
action filter_multi_types
action find
entity outer dense plaque of desmosome
relation part of
type part
type physical object
[{'concept': 'cellular component'}, 'part of', [{'concept': 'part'}, {'concept': 'physical object'}]]
SELECT DISTINCT ?n WHERE { { SELECT DISTINCT ( COUNT ( ?s ) AS ?k ) WHERE { resource:outer_dense_plaque_of_desmosome property:part_of ?s . { VALUES ( ?r ) { ( ontology:part ) ( ontology:physical_object ) } . ?s rdf:type ?r } } } . FILTER ( ?m > ?k ) . { SELECT DISTINCT ?n ( COUNT ( ?g ) AS ?m ) WHERE { { ?n property:part_of ?g . ?n rdf:type ontology:cellular_component . ?g rdf:type ontology:part } UNION { ?n rdf:type ontology:cellular_component . ?g rdf:type ontology:physical_object . ?n property:part_of ?g } } GROUP BY ?n } }
[]
Comparative Reasoning (All)
Comparative|More/Less|Mult. entity type|Incomplete
Q21095308
P361
Q15989253 Q223557 Q5058355
USER
And what about retromer complex?
(c(Q5058355),P361,c(Q15989253)|c(Q223557))
action greater
action union
action find_tuple_counts
relation P361
type Q5058355
type Q15989253
action find_tuple_counts
relation P361
type Q5058355
type Q223557
action count
action filter_multi_types
action find
entity Q21095308
relation P361
type Q15989253
type Q223557
[{'concept': 'Q5058355'}, 'P361', [{'concept': 'Q15989253'}, {'concept': 'Q223557'}]]
SELECT DISTINCT ?n WHERE { { SELECT DISTINCT ( COUNT ( ?s ) AS ?o ) WHERE { resource:Q21095308 property:P361 ?s . { VALUES ( ?e ) { ( ontology:Q15989253 ) ( ontology:Q223557 ) } . ?s rdf:type ?e } } } . FILTER ( ?d > ?o ) . { SELECT DISTINCT ?n ( COUNT ( ?y ) AS ?d ) WHERE { { ?n property:P361 ?y . ?n rdf:type ontology:Q5058355 . ?y rdf:type ontology:Q15989253 } UNION { ?n property:P361 ?y . ?n rdf:type ontology:Q5058355 . ?y rdf:type ontology:Q223557 } } GROUP BY ?n } }
retromer complex
action greater
action union
action find_tuple_counts
relation part of
type cellular component
type part
action find_tuple_counts
relation part of
type cellular component
type physical object
action count
action filter_multi_types
action find
entity retromer complex
relation part of
type part
type physical object
[{'concept': 'cellular component'}, 'part of', [{'concept': 'part'}, {'concept': 'physical object'}]]
SELECT DISTINCT ?n WHERE { { SELECT DISTINCT ( COUNT ( ?s ) AS ?o ) WHERE { resource:retromer_complex property:part_of ?s . { VALUES ( ?e ) { ( ontology:part ) ( ontology:physical_object ) } . ?s rdf:type ?e } } } . FILTER ( ?d > ?o ) . { SELECT DISTINCT ?n ( COUNT ( ?y ) AS ?d ) WHERE { { ?n property:part_of ?y . ?n rdf:type ontology:cellular_component . ?y rdf:type ontology:part } UNION { ?n property:part_of ?y . ?n rdf:type ontology:cellular_component . ?y rdf:type ontology:physical_object } } GROUP BY ?n } }
[]
part physical object cellular component
Q14912978 Q22329076 Q22326356
SYSTEM
mitochondrial nucleoid, plastid nucleoid, membrane protein complex
Q14912978 Q22326356 Q22327622 Q22327479 Q22327475 Q22326870 Q14914004 Q15320191 Q22328035 Q22329249 Q22327061 Q22326951 Q22328884 Q22328762 Q22327083 Q14873267 Q22329076 Q2914458 Q193825 Q22327423
(c(Q5058355),P361,c(Q15989253)|c(Q223557))
action greater
action union
action find_tuple_counts
relation P361
type Q5058355
type Q15989253
action find_tuple_counts
relation P361
type Q5058355
type Q223557
action count
action filter_multi_types
action find
entity Q21095308
relation P361
type Q15989253
type Q223557
[ANSWERS]
[{'concept': 'Q5058355'}, 'P361', [{'concept': 'Q15989253'}, {'concept': 'Q223557'}]]
SELECT DISTINCT ?n WHERE { { SELECT DISTINCT ( COUNT ( ?s ) AS ?o ) WHERE { resource:Q21095308 property:P361 ?s . { VALUES ( ?e ) { ( ontology:Q15989253 ) ( ontology:Q223557 ) } . ?s rdf:type ?e } } } . FILTER ( ?d > ?o ) . { SELECT DISTINCT ?n ( COUNT ( ?y ) AS ?d ) WHERE { { ?n property:P361 ?y . ?n rdf:type ontology:Q5058355 . ?y rdf:type ontology:Q15989253 } UNION { ?n property:P361 ?y . ?n rdf:type ontology:Q5058355 . ?y rdf:type ontology:Q223557 } } GROUP BY ?n } }
mitochondrial nucleoid membrane protein complex side of membrane presynapse postsynapse DAPK1-calmodulin complex synaptic membrane synaptic cleft organelle lumen virion nucleoid extracellular isoamylase complex oxidoreductase complex organellar ribosome Dxr protein complex PTEN phosphatase complex cell-cell junction plastid nucleoid extracellular space extracellular matrix extracellular organelle
mitochondrial nucleoid plastid nucleoid membrane protein complex
action greater
action union
action find_tuple_counts
relation part of
type cellular component
type part
action find_tuple_counts
relation part of
type cellular component
type physical object
action count
action filter_multi_types
action find
entity retromer complex
relation part of
type part
type physical object
[{'concept': 'cellular component'}, 'part of', [{'concept': 'part'}, {'concept': 'physical object'}]]
SELECT DISTINCT ?n WHERE { { SELECT DISTINCT ( COUNT ( ?s ) AS ?o ) WHERE { resource:retromer_complex property:part_of ?s . { VALUES ( ?e ) { ( ontology:part ) ( ontology:physical_object ) } . ?s rdf:type ?e } } } . FILTER ( ?d > ?o ) . { SELECT DISTINCT ?n ( COUNT ( ?y ) AS ?d ) WHERE { { ?n property:part_of ?y . ?n rdf:type ontology:cellular_component . ?y rdf:type ontology:part } UNION { ?n property:part_of ?y . ?n rdf:type ontology:cellular_component . ?y rdf:type ontology:physical_object } } GROUP BY ?n } }
[]
Simple Question (Coreferenced)
Simple Question|Mult. Entity
Q14912978 Q22329076 Q22326356
P361
Q15989253
USER
Which parts are those cellular components a component of ?
(Q14912978,P361,c(Q15989253)) (Q22329076,P361,c(Q15989253)) (Q22326356,P361,c(Q15989253))
action filter_type
action find
entity prev_answer
relation P361
type Q15989253
['Q14912978', 'P361', {'concept': 'Q15989253'}] ['Q22329076', 'P361', {'concept': 'Q15989253'}] ['Q22326356', 'P361', {'concept': 'Q15989253'}]
SELECT DISTINCT ?x WHERE { VALUES ( ?i ) { ( resource:Q14912978 ) ( resource:Q22326356 ) ( resource:Q22327622 ) } . ?i property:P361 ?x . ?x rdf:type ontology:Q15989253 }
mitochondrial nucleoid plastid nucleoid membrane protein complex
action filter_type
action find
entity prev_answer
relation part of
type part
['mitochondrial nucleoid', 'part of', {'concept': 'part'}] ['plastid nucleoid', 'part of', {'concept': 'part'}] ['membrane protein complex', 'part of', {'concept': 'part'}]
SELECT DISTINCT ?x WHERE { VALUES ( ?i ) { ( resource:mitochondrial_nucleoid ) ( resource:membrane_protein_complex ) ( resource:side_of_membrane ) } . ?i property:part_of ?x . ?x rdf:type ontology:part }
[]
part
Q39572 Q165963 Q14349455
SYSTEM
mitochondrion, plastid, membrane
Q39572 Q165963 Q14349455
(Q14912978,P361,c(Q15989253)) (Q22329076,P361,c(Q15989253)) (Q22326356,P361,c(Q15989253))
action filter_type
action find
entity prev_answer
relation P361
type Q15989253
[ANSWERS] are those cellular components a component of
['Q14912978', 'P361', {'concept': 'Q15989253'}] ['Q22329076', 'P361', {'concept': 'Q15989253'}] ['Q22326356', 'P361', {'concept': 'Q15989253'}]
SELECT DISTINCT ?x WHERE { VALUES ( ?i ) { ( resource:Q14912978 ) ( resource:Q22326356 ) ( resource:Q22327622 ) } . ?i property:P361 ?x . ?x rdf:type ontology:Q15989253 }
mitochondrion plastid membrane
Mitochondrion, plastid and membrane are those cellular components a component of
mitochondrion plastid membrane
action filter_type
action find
entity prev_answer
relation part of
type part
['mitochondrial nucleoid', 'part of', {'concept': 'part'}] ['plastid nucleoid', 'part of', {'concept': 'part'}] ['membrane protein complex', 'part of', {'concept': 'part'}]
SELECT DISTINCT ?x WHERE { VALUES ( ?i ) { ( resource:mitochondrial_nucleoid ) ( resource:membrane_protein_complex ) ( resource:side_of_membrane ) } . ?i property:part_of ?x . ?x rdf:type ontology:part }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q22232177
P702
Q863908
USER
What encodes transcriptional regulator    Rv0386 ?
(Q22232177,P702,c(Q863908))
action filter_type
action find
entity Q22232177
relation P702
type Q863908
['Q22232177', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?u WHERE { resource:Q22232177 property:P702 ?u . ?u rdf:type ontology:Q863908 }
transcriptional regulator    Rv0386
action filter_type
action find
entity transcriptional regulator    Rv0386
relation encoded by
type nucleic acid sequence
['transcriptional regulator    Rv0386', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?u WHERE { resource:transcriptional_regulator____Rv0386 property:encoded_by ?u . ?u rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q22227800
SYSTEM
transcriptional regulator    Rv0386
Q22227800
(Q22232177,P702,c(Q863908))
action filter_type
action find
entity Q22232177
relation P702
type Q863908
Gene transcriptional regulator Rv0386 encodes transcriptional regulator Rv0386
['Q22232177', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?u WHERE { resource:Q22232177 property:P702 ?u . ?u rdf:type ontology:Q863908 }
transcriptional regulator    Rv0386
Gene transcriptional regulator Rv0386 encodes transcriptional regulator Rv0386
transcriptional regulator    Rv0386
action filter_type
action find
entity transcriptional regulator    Rv0386
relation encoded by
type nucleic acid sequence
['transcriptional regulator    Rv0386', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?u WHERE { resource:transcriptional_regulator____Rv0386 property:encoded_by ?u . ?u rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q22232177
P682
Q2057971
USER
Which health problem is that nutrient involved in ?
(Q22227800,P682,c(Q2057971))
action filter_type
action find
entity Q22232177
relation P682
type Q2057971
['Q22227800', 'P682', {'concept': 'Q2057971'}]
SELECT DISTINCT ?l WHERE { resource:Q22232177 property:P682 ?l . ?l rdf:type ontology:Q2057971 }
transcriptional regulator    Rv0386
action filter_type
action find
entity transcriptional regulator    Rv0386
relation biological process
type health problem
['transcriptional regulator    Rv0386', 'biological process', {'concept': 'health problem'}]
SELECT DISTINCT ?l WHERE { resource:transcriptional_regulator____Rv0386 property:biological_process ?l . ?l rdf:type ontology:health_problem }
[]
health problem
Q372016
SYSTEM
pathogenesis
Q372016
(Q22227800,P682,c(Q2057971))
action filter_type
action find
entity Q22232177
relation P682
type Q2057971
The [ANSWER] is that nutrient involved in
['Q22227800', 'P682', {'concept': 'Q2057971'}]
SELECT DISTINCT ?l WHERE { resource:Q22232177 property:P682 ?l . ?l rdf:type ontology:Q2057971 }
pathogenesis
The pathogenesis is that nutrient involved in
pathogenesis
action filter_type
action find
entity transcriptional regulator    Rv0386
relation biological process
type health problem
['transcriptional regulator    Rv0386', 'biological process', {'concept': 'health problem'}]
SELECT DISTINCT ?l WHERE { resource:transcriptional_regulator____Rv0386 property:biological_process ?l . ?l rdf:type ontology:health_problem }
[]