Simple Question (Direct)
Simple Question
Q24092865
P702
Q863908
USER
Which nucleic acid sequence encodes glycolate oxidase subunit GlcD    Psyr_3331 ?
(Q24092865,P702,c(Q863908))
action filter_type
action find
entity Q24092865
relation P702
type Q863908
['Q24092865', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?s WHERE { resource:Q24092865 property:P702 ?s . ?s rdf:type ontology:Q863908 }
glycolate oxidase subunit GlcD    Psyr_3331
action filter_type
action find
entity glycolate oxidase subunit GlcD    Psyr_3331
relation encoded by
type nucleic acid sequence
['glycolate oxidase subunit GlcD    Psyr_3331', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?s WHERE { resource:glycolate_oxidase_subunit_GlcD____Psyr_3331 property:encoded_by ?s . ?s rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23145428
SYSTEM
glycolate oxidase subunit GlcD    Psyr_3331
Q23145428
(Q24092865,P702,c(Q863908))
action filter_type
action find
entity Q24092865
relation P702
type Q863908
Glycolate oxidase subunit GlcD Psyr 3331 encodes glycolate oxidase subunit GlcD Psyr_3331
['Q24092865', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?s WHERE { resource:Q24092865 property:P702 ?s . ?s rdf:type ontology:Q863908 }
glycolate oxidase subunit GlcD    Psyr_3331
Glycolate oxidase subunit GlcD Psyr 3331 encodes glycolate oxidase subunit GlcD Psyr_3331
glycolate oxidase subunit GlcD    Psyr_3331
action filter_type
action find
entity glycolate oxidase subunit GlcD    Psyr_3331
relation encoded by
type nucleic acid sequence
['glycolate oxidase subunit GlcD    Psyr_3331', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?s WHERE { resource:glycolate_oxidase_subunit_GlcD____Psyr_3331 property:encoded_by ?s . ?s rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q24092865
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(c(Q863908),P688,Q23145428)
action filter_type
action find_reverse
entity Q24092865
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q23145428']
SELECT DISTINCT ?s WHERE { ?s property:P688 resource:Q24092865 . ?s rdf:type ontology:Q863908 }
glycolate oxidase subunit GlcD    Psyr_3331
action filter_type
action find_reverse
entity glycolate oxidase subunit GlcD    Psyr_3331
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'glycolate oxidase subunit GlcD    Psyr_3331']
SELECT DISTINCT ?s WHERE { ?s property:encodes resource:glycolate_oxidase_subunit_GlcD____Psyr_3331 . ?s rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23145428
SYSTEM
glycolate oxidase subunit GlcD    Psyr_3331
Q23145428
(c(Q863908),P688,Q23145428)
action filter_type
action find_reverse
entity Q24092865
relation P688
type Q863908
Glycolate oxidase subunit GlcD Psyr 3331 encodes that nutrient
[{'concept': 'Q863908'}, 'P688', 'Q23145428']
SELECT DISTINCT ?s WHERE { ?s property:P688 resource:Q24092865 . ?s rdf:type ontology:Q863908 }
glycolate oxidase subunit GlcD    Psyr_3331
Glycolate oxidase subunit GlcD Psyr 3331 encodes that nutrient
glycolate oxidase subunit GlcD    Psyr_3331
action filter_type
action find_reverse
entity glycolate oxidase subunit GlcD    Psyr_3331
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'glycolate oxidase subunit GlcD    Psyr_3331']
SELECT DISTINCT ?s WHERE { ?s property:encodes resource:glycolate_oxidase_subunit_GlcD____Psyr_3331 . ?s rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q23145428 Q27476897
P702
Q181394
USER
Is DNA-binding transcriptional repressor FabR    SDY_3765 encoded by that nucleic acid sequence ?
(Q27476897,P702,Q23145428)
action is_in
entity Q27476897
action find
entity Q23145428
relation P702
['Q27476897', 'P702', 'Q23145428']
ASK WHERE { resource:Q23145428 property:P702 resource:Q27476897 }
glycolate oxidase subunit GlcD    Psyr_3331 DNA-binding transcriptional repressor FabR    SDY_3765
action is_in
entity DNA-binding transcriptional repressor FabR    SDY_3765
action find
entity glycolate oxidase subunit GlcD    Psyr_3331
relation encoded by
['DNA-binding transcriptional repressor FabR    SDY_3765', 'encoded by', 'glycolate oxidase subunit GlcD    Psyr_3331']
ASK WHERE { resource:glycolate_oxidase_subunit_GlcD____Psyr_3331 property:encoded_by resource:DNA-binding_transcriptional_repressor_FabR____SDY_3765 }
[]
nutrient
SYSTEM
NO
(Q27476897,P702,Q23145428)
action is_in
entity Q27476897
action find
entity Q23145428
relation P702
[ANSWER]
['Q27476897', 'P702', 'Q23145428']
ASK WHERE { resource:Q23145428 property:P702 resource:Q27476897 }
No
action is_in
entity DNA-binding transcriptional repressor FabR    SDY_3765
action find
entity glycolate oxidase subunit GlcD    Psyr_3331
relation encoded by
['DNA-binding transcriptional repressor FabR    SDY_3765', 'encoded by', 'glycolate oxidase subunit GlcD    Psyr_3331']
ASK WHERE { resource:glycolate_oxidase_subunit_GlcD____Psyr_3331 property:encoded_by resource:DNA-binding_transcriptional_repressor_FabR____SDY_3765 }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q24092865 Q21079490
P703
Q631147
USER
Is Pseudomonas syringae pv. syringae B728a glycolate oxidase subunit GlcD    Psyr_3331 found ?
(Q24092865,P703,Q21079490)
action is_in
entity Q21079490
action find
entity Q24092865
relation P703
['Q24092865', 'P703', 'Q21079490']
ASK WHERE { resource:Q24092865 property:P703 resource:Q21079490 }
glycolate oxidase subunit GlcD    Psyr_3331 Pseudomonas syringae pv. syringae B728a
action is_in
entity Pseudomonas syringae pv. syringae B728a
action find
entity glycolate oxidase subunit GlcD    Psyr_3331
relation found in taxon
['glycolate oxidase subunit GlcD    Psyr_3331', 'found in taxon', 'Pseudomonas syringae pv. syringae B728a']
ASK WHERE { resource:glycolate_oxidase_subunit_GlcD____Psyr_3331 property:found_in_taxon resource:Pseudomonas_syringae_pv._syringae_B728a }
[]
infraspecific name
SYSTEM
YES
(Q24092865,P703,Q21079490)
action is_in
entity Q21079490
action find
entity Q24092865
relation P703
[ANSWER]
['Q24092865', 'P703', 'Q21079490']
ASK WHERE { resource:Q24092865 property:P703 resource:Q21079490 }
Yes
action is_in
entity Pseudomonas syringae pv. syringae B728a
action find
entity glycolate oxidase subunit GlcD    Psyr_3331
relation found in taxon
['glycolate oxidase subunit GlcD    Psyr_3331', 'found in taxon', 'Pseudomonas syringae pv. syringae B728a']
ASK WHERE { resource:glycolate_oxidase_subunit_GlcD____Psyr_3331 property:found_in_taxon resource:Pseudomonas_syringae_pv._syringae_B728a }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23556204 Q24092865
P703
Q631147
USER
Which infraspecific names are glycolate oxidase subunit GlcD    Psyr_3331 or RNA methylase    BPSL2144 found ?
OR((Q24092865,P703,c(Q631147)), (Q23556204,P703,c(Q631147)))
action filter_type
action union
action find
entity Q24092865
relation P703
action find
entity Q23556204
relation P703
type Q631147
{'OR': [['Q24092865', 'P703', {'concept': 'Q631147'}], ['Q23556204', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?p WHERE { { { resource:Q24092865 property:P703 ?p } UNION { resource:Q23556204 property:P703 ?p } } . ?p rdf:type ontology:Q631147 }
RNA methylase    BPSL2144 glycolate oxidase subunit GlcD    Psyr_3331
action filter_type
action union
action find
entity glycolate oxidase subunit GlcD    Psyr_3331
relation found in taxon
action find
entity RNA methylase    BPSL2144
relation found in taxon
type infraspecific name
{'OR': [['glycolate oxidase subunit GlcD    Psyr_3331', 'found in taxon', {'concept': 'infraspecific name'}], ['RNA methylase    BPSL2144', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?p WHERE { { { resource:glycolate_oxidase_subunit_GlcD____Psyr_3331 property:found_in_taxon ?p } UNION { resource:RNA_methylase____BPSL2144 property:found_in_taxon ?p } } . ?p rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21079490 Q21102995
SYSTEM
Pseudomonas syringae pv. syringae B728a, Burkholderia pseudomallei K96243
Q21079490 Q21102995
OR((Q24092865,P703,c(Q631147)), (Q23556204,P703,c(Q631147)))
action filter_type
action union
action find
entity Q24092865
relation P703
action find
entity Q23556204
relation P703
type Q631147
[ANSWERS] are glycolate oxidase subunit GlcD Psyr_3331 or RNA methylase BPSL2144 found
{'OR': [['Q24092865', 'P703', {'concept': 'Q631147'}], ['Q23556204', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?p WHERE { { { resource:Q24092865 property:P703 ?p } UNION { resource:Q23556204 property:P703 ?p } } . ?p rdf:type ontology:Q631147 }
Pseudomonas syringae pv. syringae B728a Burkholderia pseudomallei K96243
Pseudomonas syringae pv. syringae B728a and Burkholderia pseudomallei K96243 are glycolate oxidase subunit GlcD Psyr_3331 or RNA methylase BPSL2144 found
Pseudomonas syringae pv. syringae B728a Burkholderia pseudomallei K96243
action filter_type
action union
action find
entity glycolate oxidase subunit GlcD    Psyr_3331
relation found in taxon
action find
entity RNA methylase    BPSL2144
relation found in taxon
type infraspecific name
{'OR': [['glycolate oxidase subunit GlcD    Psyr_3331', 'found in taxon', {'concept': 'infraspecific name'}], ['RNA methylase    BPSL2144', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?p WHERE { { { resource:glycolate_oxidase_subunit_GlcD____Psyr_3331 property:found_in_taxon ?p } UNION { resource:RNA_methylase____BPSL2144 property:found_in_taxon ?p } } . ?p rdf:type ontology:infraspecific_name }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q24092865
P682
Q1057
USER
What is the metabolic process that glycolate oxidase subunit GlcD    Psyr_3331 is involved in ?
(Q24092865,P682,c(Q1057))
action filter_type
action find
entity Q24092865
relation P682
type Q1057
['Q24092865', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:Q1057 . resource:Q24092865 property:P682 ?s }
glycolate oxidase subunit GlcD    Psyr_3331
action filter_type
action find
entity glycolate oxidase subunit GlcD    Psyr_3331
relation biological process
type metabolic process
['glycolate oxidase subunit GlcD    Psyr_3331', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:metabolic_process . resource:glycolate_oxidase_subunit_GlcD____Psyr_3331 property:biological_process ?s }
[]
metabolic process
Q14349764
SYSTEM
oxidation-reduction process
Q14349764
(Q24092865,P682,c(Q1057))
action filter_type
action find
entity Q24092865
relation P682
type Q1057
The metabolic process that glycolate oxidase subunit GlcD Psyr_3331 is involved in is [ANSWER]
['Q24092865', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:Q1057 . resource:Q24092865 property:P682 ?s }
oxidation-reduction process
The metabolic process that glycolate oxidase subunit GlcD Psyr_3331 is involved in is oxidation-reduction process
oxidation-reduction process
action filter_type
action find
entity glycolate oxidase subunit GlcD    Psyr_3331
relation biological process
type metabolic process
['glycolate oxidase subunit GlcD    Psyr_3331', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:metabolic_process . resource:glycolate_oxidase_subunit_GlcD____Psyr_3331 property:biological_process ?s }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q23587425
Q1057
USER
And also tell me about Putative short-chain dehydrogenase/reductase    MAB_3440c?
(Q23587425,P682,c(Q1057))
action filter_type
action find
entity Q23587425
relation P682
type Q1057
['Q23587425', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?y WHERE { ?y rdf:type ontology:Q1057 . resource:Q23587425 property:P682 ?y }
Putative short-chain dehydrogenase/reductase    MAB_3440c
action filter_type
action find
entity Putative short-chain dehydrogenase/reductase    MAB_3440c
relation biological process
type metabolic process
['Putative short-chain dehydrogenase/reductase    MAB_3440c', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?y WHERE { ?y rdf:type ontology:metabolic_process . resource:Putative_short-chain_dehydrogenase/reductase____MAB_3440c property:biological_process ?y }
[]
metabolic process
Q14349764
SYSTEM
oxidation-reduction process
Q14349764
(Q23587425,P682,c(Q1057))
action filter_type
action find
entity Q23587425
relation P682
type Q1057
[ANSWER]
['Q23587425', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?y WHERE { ?y rdf:type ontology:Q1057 . resource:Q23587425 property:P682 ?y }
oxidation-reduction process
oxidation-reduction process
action filter_type
action find
entity Putative short-chain dehydrogenase/reductase    MAB_3440c
relation biological process
type metabolic process
['Putative short-chain dehydrogenase/reductase    MAB_3440c', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?y WHERE { ?y rdf:type ontology:metabolic_process . resource:Putative_short-chain_dehydrogenase/reductase____MAB_3440c property:biological_process ?y }
[]