Simple Question (Direct)
Simple Question
Q21135680
P702
Q863908
USER
Which nucleic acid sequence encodes Spermatogenesis-associated protein 13 ?
(Q21135680,P702,c(Q863908))
action filter_type
action find
entity Q21135680
relation P702
type Q863908
['Q21135680', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?e WHERE { resource:Q21135680 property:P702 ?e . ?e rdf:type ontology:Q863908 }
Spermatogenesis-associated protein 13
action filter_type
action find
entity Spermatogenesis-associated protein 13
relation encoded by
type nucleic acid sequence
['Spermatogenesis-associated protein 13', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?e WHERE { resource:Spermatogenesis-associated_protein_13 property:encoded_by ?e . ?e rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18053477
SYSTEM
SPATA13
Q18053477
(Q21135680,P702,c(Q863908))
action filter_type
action find
entity Q21135680
relation P702
type Q863908
[ANSWER] encodes Spermatogenesis-associated protein 13
['Q21135680', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?e WHERE { resource:Q21135680 property:P702 ?e . ?e rdf:type ontology:Q863908 }
SPATA13
SPATA13 encodes Spermatogenesis-associated protein 13
SPATA13
action filter_type
action find
entity Spermatogenesis-associated protein 13
relation encoded by
type nucleic acid sequence
['Spermatogenesis-associated protein 13', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?e WHERE { resource:Spermatogenesis-associated_protein_13 property:encoded_by ?e . ?e rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18053477
P684
Q863908
USER
What is an otrhologus gene for that one ?
(Q18053477,P684,c(Q863908))
action filter_type
action find
entity Q18053477
relation P684
type Q863908
['Q18053477', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?a WHERE { ?a rdf:type ontology:Q863908 . resource:Q18053477 property:P684 ?a }
SPATA13
action filter_type
action find
entity SPATA13
relation ortholog
type nucleic acid sequence
['SPATA13', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?a WHERE { ?a rdf:type ontology:nucleic_acid_sequence . resource:SPATA13 property:ortholog ?a }
[]
nucleic acid sequence
Q18297062
SYSTEM
Spata13
Q18297062
(Q18053477,P684,c(Q863908))
action filter_type
action find
entity Q18053477
relation P684
type Q863908
An otrhologus gene for that one is a [ANSWER]
['Q18053477', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?a WHERE { ?a rdf:type ontology:Q863908 . resource:Q18053477 property:P684 ?a }
Spata13
An otrhologus gene for that one is a Spata13
Spata13
action filter_type
action find
entity SPATA13
relation ortholog
type nucleic acid sequence
['SPATA13', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?a WHERE { ?a rdf:type ontology:nucleic_acid_sequence . resource:SPATA13 property:ortholog ?a }
[]
Verification (Boolean) (All)
Verification|3 entities, all direct, 2 are query entities
Q18297062 Q23438764 Q21987517
P688
Q181394
USER
Does Spata13 encode reverse transcriptase    VF_1044 and Spermatogenesis-associated protein 13 ?
(Q18297062,P688,Q23438764) (Q18297062,P688,Q21987517)
action is_in
entity Q18297062
action intersection
action find_reverse
entity Q23438764
relation P688
action find_reverse
entity Q21987517
relation P688
['Q18297062', 'P688', 'Q23438764'] ['Q18297062', 'P688', 'Q21987517']
ASK WHERE { resource:Q18297062 property:P688 resource:Q23438764 . resource:Q18297062 property:P688 resource:Q21987517 }
Spata13 reverse transcriptase    VF_1044 Spermatogenesis-associated protein 13
action is_in
entity Spata13
action intersection
action find_reverse
entity reverse transcriptase    VF_1044
relation encodes
action find_reverse
entity Spermatogenesis-associated protein 13
relation encodes
['Spata13', 'encodes', 'reverse transcriptase    VF_1044'] ['Spata13', 'encodes', 'Spermatogenesis-associated protein 13']
ASK WHERE { resource:Spata13 property:encodes resource:reverse_transcriptase____VF_1044 . resource:Spata13 property:encodes resource:Spermatogenesis-associated_protein_13 }
[]
nutrient
SYSTEM
NO and YES respectively
(Q18297062,P688,Q23438764) (Q18297062,P688,Q21987517)
action is_in
entity Q18297062
action intersection
action find_reverse
entity Q23438764
relation P688
action find_reverse
entity Q21987517
relation P688
[ANSWER]
['Q18297062', 'P688', 'Q23438764'] ['Q18297062', 'P688', 'Q21987517']
ASK WHERE { resource:Q18297062 property:P688 resource:Q23438764 . resource:Q18297062 property:P688 resource:Q21987517 }
NO and YES respectively
action is_in
entity Spata13
action intersection
action find_reverse
entity reverse transcriptase    VF_1044
relation encodes
action find_reverse
entity Spermatogenesis-associated protein 13
relation encodes
['Spata13', 'encodes', 'reverse transcriptase    VF_1044'] ['Spata13', 'encodes', 'Spermatogenesis-associated protein 13']
ASK WHERE { resource:Spata13 property:encodes resource:reverse_transcriptase____VF_1044 . resource:Spata13 property:encodes resource:Spermatogenesis-associated_protein_13 }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23117361 Q18053477
P688
Q181394
USER
Which nutrients are encoded by SPATA13 or acetyltransferase    FN1587 ?
OR((Q18053477,P688,c(Q181394)), (Q23117361,P688,c(Q181394)))
action filter_type
action union
action find
entity Q18053477
relation P688
action find
entity Q23117361
relation P688
type Q181394
{'OR': [['Q18053477', 'P688', {'concept': 'Q181394'}], ['Q23117361', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:Q181394 . { { resource:Q18053477 property:P688 ?x } UNION { resource:Q23117361 property:P688 ?x } } }
acetyltransferase    FN1587 SPATA13
action filter_type
action union
action find
entity SPATA13
relation encodes
action find
entity acetyltransferase    FN1587
relation encodes
type nutrient
{'OR': [['SPATA13', 'encodes', {'concept': 'nutrient'}], ['acetyltransferase    FN1587', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:nutrient . { { resource:SPATA13 property:encodes ?x } UNION { resource:acetyltransferase____FN1587 property:encodes ?x } } }
[]
nutrient
Q21151222 Q21135680 Q21149636 Q23460566
SYSTEM
Spermatogenesis-associated protein 13, Spermatogenesis-associated protein 13, Spermatogenesis associated 13, isoform CRA_a, acetyltransferase    FN1587
Q21151222 Q21135680 Q21149636 Q23460566
OR((Q18053477,P688,c(Q181394)), (Q23117361,P688,c(Q181394)))
action filter_type
action union
action find
entity Q18053477
relation P688
action find
entity Q23117361
relation P688
type Q181394
[ANSWERS]
{'OR': [['Q18053477', 'P688', {'concept': 'Q181394'}], ['Q23117361', 'P688', {'concept': 'Q181394'}]]}
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:Q181394 . { { resource:Q18053477 property:P688 ?x } UNION { resource:Q23117361 property:P688 ?x } } }
Spermatogenesis-associated protein 13 Spermatogenesis-associated protein 13 Spermatogenesis associated 13, isoform CRA_a acetyltransferase    FN1587
Spermatogenesis-associated protein 13, Spermatogenesis associated 13, isoform CRA a and acetyltransferase FN1587 are encoded by SPATA13 or acetyltransferase FN1587
Spermatogenesis-associated protein 13 Spermatogenesis-associated protein 13 Spermatogenesis associated 13, isoform CRA_a acetyltransferase    FN1587
action filter_type
action union
action find
entity SPATA13
relation encodes
action find
entity acetyltransferase    FN1587
relation encodes
type nutrient
{'OR': [['SPATA13', 'encodes', {'concept': 'nutrient'}], ['acetyltransferase    FN1587', 'encodes', {'concept': 'nutrient'}]]}
SELECT DISTINCT ?x WHERE { ?x rdf:type ontology:nutrient . { { resource:SPATA13 property:encodes ?x } UNION { resource:acetyltransferase____FN1587 property:encodes ?x } } }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23595063 Q21135680
P681
Q5058355
USER
Which cellular components are components of Spermatogenesis-associated protein 13 or hypothetical protein    aq_175a ?
OR((Q21135680,P681,c(Q5058355)), (Q23595063,P681,c(Q5058355)))
action filter_type
action union
action find
entity Q21135680
relation P681
action find
entity Q23595063
relation P681
type Q5058355
{'OR': [['Q21135680', 'P681', {'concept': 'Q5058355'}], ['Q23595063', 'P681', {'concept': 'Q5058355'}]]}
SELECT DISTINCT ?s WHERE { { { resource:Q23595063 property:P681 ?s } UNION { resource:Q21135680 property:P681 ?s } } . ?s rdf:type ontology:Q5058355 }
hypothetical protein    aq_175a Spermatogenesis-associated protein 13
action filter_type
action union
action find
entity Spermatogenesis-associated protein 13
relation cell component
action find
entity hypothetical protein    aq_175a
relation cell component
type cellular component
{'OR': [['Spermatogenesis-associated protein 13', 'cell component', {'concept': 'cellular component'}], ['hypothetical protein    aq_175a', 'cell component', {'concept': 'cellular component'}]]}
SELECT DISTINCT ?s WHERE { { { resource:hypothetical_protein____aq_175a property:cell_component ?s } UNION { resource:Spermatogenesis-associated_protein_13 property:cell_component ?s } } . ?s rdf:type ontology:cellular_component }
[]
cellular component
Q29548 Q14353100
SYSTEM
plasma membrane, cell projection
Q29548 Q14353100
OR((Q21135680,P681,c(Q5058355)), (Q23595063,P681,c(Q5058355)))
action filter_type
action union
action find
entity Q21135680
relation P681
action find
entity Q23595063
relation P681
type Q5058355
The [ANSWERS] are components of Spermatogenesis-associated protein 13 or hypothetical protein aq_175a
{'OR': [['Q21135680', 'P681', {'concept': 'Q5058355'}], ['Q23595063', 'P681', {'concept': 'Q5058355'}]]}
SELECT DISTINCT ?s WHERE { { { resource:Q23595063 property:P681 ?s } UNION { resource:Q21135680 property:P681 ?s } } . ?s rdf:type ontology:Q5058355 }
plasma membrane cell projection
The plasma membrane and cell projection are components of Spermatogenesis-associated protein 13 or hypothetical protein aq_175a
plasma membrane cell projection
action filter_type
action union
action find
entity Spermatogenesis-associated protein 13
relation cell component
action find
entity hypothetical protein    aq_175a
relation cell component
type cellular component
{'OR': [['Spermatogenesis-associated protein 13', 'cell component', {'concept': 'cellular component'}], ['hypothetical protein    aq_175a', 'cell component', {'concept': 'cellular component'}]]}
SELECT DISTINCT ?s WHERE { { { resource:hypothetical_protein____aq_175a property:cell_component ?s } UNION { resource:Spermatogenesis-associated_protein_13 property:cell_component ?s } } . ?s rdf:type ontology:cellular_component }
[]
Verification (Boolean) (All)
Verification|one entity, multiple entities (as object) referred indirectly
Q24097988
P681
Q181394
USER
Do hypothetical protein    XCC2961 have those ones as cell component ?
(Q24097988,P681,Q29548) (Q24097988,P681,Q14353100)
action is_in
entity prev_answer
action find
entity Q24097988
relation P681
['Q24097988', 'P681', 'Q29548'] ['Q24097988', 'P681', 'Q14353100']
ASK WHERE { resource:Q24097988 property:P681 ?d . VALUES ( ?d ) { ( resource:Q29548 ) ( resource:Q14353100 ) } }
hypothetical protein    XCC2961
action is_in
entity prev_answer
action find
entity hypothetical protein    XCC2961
relation cell component
['hypothetical protein    XCC2961', 'cell component', 'plasma membrane'] ['hypothetical protein    XCC2961', 'cell component', 'cell projection']
ASK WHERE { resource:hypothetical_protein____XCC2961 property:cell_component ?d . VALUES ( ?d ) { ( resource:plasma_membrane ) ( resource:cell_projection ) } }
[]
nutrient
SYSTEM
NO
(Q24097988,P681,Q29548) (Q24097988,P681,Q14353100)
action is_in
entity prev_answer
action find
entity Q24097988
relation P681
[ANSWER]
['Q24097988', 'P681', 'Q29548'] ['Q24097988', 'P681', 'Q14353100']
ASK WHERE { resource:Q24097988 property:P681 ?d . VALUES ( ?d ) { ( resource:Q29548 ) ( resource:Q14353100 ) } }
No
action is_in
entity prev_answer
action find
entity hypothetical protein    XCC2961
relation cell component
['hypothetical protein    XCC2961', 'cell component', 'plasma membrane'] ['hypothetical protein    XCC2961', 'cell component', 'cell projection']
ASK WHERE { resource:hypothetical_protein____XCC2961 property:cell_component ?d . VALUES ( ?d ) { ( resource:plasma_membrane ) ( resource:cell_projection ) } }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q21151222 Q18053477
P702
Q863908
USER
Does SPATA13 encode Spermatogenesis-associated protein 13 ?
(Q21151222,P702,Q18053477)
action is_in
entity Q18053477
action find
entity Q21151222
relation P702
['Q21151222', 'P702', 'Q18053477']
ASK WHERE { resource:Q21151222 property:P702 resource:Q18053477 }
Spermatogenesis-associated protein 13 SPATA13
action is_in
entity SPATA13
action find
entity Spermatogenesis-associated protein 13
relation encoded by
['Spermatogenesis-associated protein 13', 'encoded by', 'SPATA13']
ASK WHERE { resource:Spermatogenesis-associated_protein_13 property:encoded_by resource:SPATA13 }
[]
nucleic acid sequence
SYSTEM
YES
(Q21151222,P702,Q18053477)
action is_in
entity Q18053477
action find
entity Q21151222
relation P702
[ANSWER]
['Q21151222', 'P702', 'Q18053477']
ASK WHERE { resource:Q21151222 property:P702 resource:Q18053477 }
Yes
action is_in
entity SPATA13
action find
entity Spermatogenesis-associated protein 13
relation encoded by
['Spermatogenesis-associated protein 13', 'encoded by', 'SPATA13']
ASK WHERE { resource:Spermatogenesis-associated_protein_13 property:encoded_by resource:SPATA13 }
[]
Verification (Boolean) (All)
Verification|3 entities, all direct, 2 are query entities
Q18297062 Q18053477 Q20957056
P684
Q863908
USER
Is Spata13 the name of the species that has SPATA13 and Gm40137 as its orthologous gene ?
(Q18297062,P684,Q18053477) (Q18297062,P684,Q20957056)
action is_in
entity Q18297062
action intersection
action find_reverse
entity Q18053477
relation P684
action find_reverse
entity Q20957056
relation P684
['Q18297062', 'P684', 'Q18053477'] ['Q18297062', 'P684', 'Q20957056']
ASK WHERE { resource:Q18297062 property:P684 resource:Q20957056 . resource:Q18297062 property:P684 resource:Q18053477 }
Spata13 SPATA13 Gm40137
action is_in
entity Spata13
action intersection
action find_reverse
entity SPATA13
relation ortholog
action find_reverse
entity Gm40137
relation ortholog
['Spata13', 'ortholog', 'SPATA13'] ['Spata13', 'ortholog', 'Gm40137']
ASK WHERE { resource:Spata13 property:ortholog resource:Gm40137 . resource:Spata13 property:ortholog resource:SPATA13 }
[]
nucleic acid sequence
SYSTEM
YES and NO respectively
(Q18297062,P684,Q18053477) (Q18297062,P684,Q20957056)
action is_in
entity Q18297062
action intersection
action find_reverse
entity Q18053477
relation P684
action find_reverse
entity Q20957056
relation P684
[ANSWER]
['Q18297062', 'P684', 'Q18053477'] ['Q18297062', 'P684', 'Q20957056']
ASK WHERE { resource:Q18297062 property:P684 resource:Q20957056 . resource:Q18297062 property:P684 resource:Q18053477 }
YES and NO respectively
action is_in
entity Spata13
action intersection
action find_reverse
entity SPATA13
relation ortholog
action find_reverse
entity Gm40137
relation ortholog
['Spata13', 'ortholog', 'SPATA13'] ['Spata13', 'ortholog', 'Gm40137']
ASK WHERE { resource:Spata13 property:ortholog resource:Gm40137 . resource:Spata13 property:ortholog resource:SPATA13 }
[]