Simple Question (Direct)
Simple Question
Q22234339
P680
Q44424
USER
Which chemical bond represents molecular function of fructose 1,6-bisphosphatase    Rv1099c ?
(Q22234339,P680,c(Q44424))
action filter_type
action find
entity Q22234339
relation P680
type Q44424
['Q22234339', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?w WHERE { resource:Q22234339 property:P680 ?w . ?w rdf:type ontology:Q44424 }
fructose 1,6-bisphosphatase    Rv1099c
action filter_type
action find
entity fructose 1,6-bisphosphatase    Rv1099c
relation molecular function
type chemical bond
['fructose 1,6-bisphosphatase    Rv1099c', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?w WHERE { resource:fructose_1,6-bisphosphatase____Rv1099c property:molecular_function ?w . ?w rdf:type ontology:chemical_bond }
[]
chemical bond
Q13667380
SYSTEM
metal ion binding
Q13667380
(Q22234339,P680,c(Q44424))
action filter_type
action find
entity Q22234339
relation P680
type Q44424
The [ANSWER] represents molecular function of fructose 1,6-bisphosphatase Rv1099c
['Q22234339', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?w WHERE { resource:Q22234339 property:P680 ?w . ?w rdf:type ontology:Q44424 }
metal ion binding
The metal ion binding represents molecular function of fructose 1,6-bisphosphatase Rv1099c
metal ion binding
action filter_type
action find
entity fructose 1,6-bisphosphatase    Rv1099c
relation molecular function
type chemical bond
['fructose 1,6-bisphosphatase    Rv1099c', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?w WHERE { resource:fructose_1,6-bisphosphatase____Rv1099c property:molecular_function ?w . ?w rdf:type ontology:chemical_bond }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q22234339
P688
Q863908
USER
Which nucleic acid sequence encodes fructose 1,6-bisphosphatase    Rv1099c ?
(c(Q863908),P688,Q22234339)
action filter_type
action find_reverse
entity Q22234339
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q22234339']
SELECT DISTINCT ?l WHERE { ?l property:P688 resource:Q22234339 . ?l rdf:type ontology:Q863908 }
fructose 1,6-bisphosphatase    Rv1099c
action filter_type
action find_reverse
entity fructose 1,6-bisphosphatase    Rv1099c
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'fructose 1,6-bisphosphatase    Rv1099c']
SELECT DISTINCT ?l WHERE { ?l property:encodes resource:fructose_1,6-bisphosphatase____Rv1099c . ?l rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q22229640
SYSTEM
fructose 1,6-bisphosphatase    Rv1099c
Q22229640
(c(Q863908),P688,Q22234339)
action filter_type
action find_reverse
entity Q22234339
relation P688
type Q863908
Fructose 1,6-bisphosphatase Rv1099c encodes fructose 1,6-bisphosphatase Rv1099c
[{'concept': 'Q863908'}, 'P688', 'Q22234339']
SELECT DISTINCT ?l WHERE { ?l property:P688 resource:Q22234339 . ?l rdf:type ontology:Q863908 }
fructose 1,6-bisphosphatase    Rv1099c
Fructose 1,6-bisphosphatase Rv1099c encodes fructose 1,6-bisphosphatase Rv1099c
fructose 1,6-bisphosphatase    Rv1099c
action filter_type
action find_reverse
entity fructose 1,6-bisphosphatase    Rv1099c
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'fructose 1,6-bisphosphatase    Rv1099c']
SELECT DISTINCT ?l WHERE { ?l property:encodes resource:fructose_1,6-bisphosphatase____Rv1099c . ?l rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q22229640
P702
Q181394
USER
What is the gene that is encoded by that nucleic acid sequence ?
(c(Q181394),P702,Q22229640)
action filter_type
action find_reverse
entity Q22229640
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q22229640']
SELECT DISTINCT ?i WHERE { ?i property:P702 resource:Q22229640 . ?i rdf:type ontology:Q181394 }
fructose 1,6-bisphosphatase    Rv1099c
action filter_type
action find_reverse
entity fructose 1,6-bisphosphatase    Rv1099c
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'fructose 1,6-bisphosphatase    Rv1099c']
SELECT DISTINCT ?i WHERE { ?i property:encoded_by resource:fructose_1,6-bisphosphatase____Rv1099c . ?i rdf:type ontology:nutrient }
[]
nutrient
Q22234339
SYSTEM
fructose 1,6-bisphosphatase    Rv1099c
Q22234339
(c(Q181394),P702,Q22229640)
action filter_type
action find_reverse
entity Q22229640
relation P702
type Q181394
The gene that is encoded by that nucleic acid sequence is the fructose 1,6-bisphosphatase Rv1099c
[{'concept': 'Q181394'}, 'P702', 'Q22229640']
SELECT DISTINCT ?i WHERE { ?i property:P702 resource:Q22229640 . ?i rdf:type ontology:Q181394 }
fructose 1,6-bisphosphatase    Rv1099c
The gene that is encoded by that nucleic acid sequence is the fructose 1,6-bisphosphatase Rv1099c
fructose 1,6-bisphosphatase    Rv1099c
action filter_type
action find_reverse
entity fructose 1,6-bisphosphatase    Rv1099c
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'fructose 1,6-bisphosphatase    Rv1099c']
SELECT DISTINCT ?i WHERE { ?i property:encoded_by resource:fructose_1,6-bisphosphatase____Rv1099c . ?i rdf:type ontology:nutrient }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q22229640
P703
Q631147
USER
What is the taxon to which that nucleic acid sequence belongs to ?
(Q22234339,P703,c(Q631147))
action filter_type
action find
entity Q22229640
relation P703
type Q631147
['Q22234339', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?l WHERE { resource:Q22229640 property:P703 ?l . ?l rdf:type ontology:Q631147 }
fructose 1,6-bisphosphatase    Rv1099c
action filter_type
action find
entity fructose 1,6-bisphosphatase    Rv1099c
relation found in taxon
type infraspecific name
['fructose 1,6-bisphosphatase    Rv1099c', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?l WHERE { resource:fructose_1,6-bisphosphatase____Rv1099c property:found_in_taxon ?l . ?l rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102987
SYSTEM
Mycobacterium tuberculosis H37Rv
Q21102987
(Q22234339,P703,c(Q631147))
action filter_type
action find
entity Q22229640
relation P703
type Q631147
H [ANSWER]
['Q22234339', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?l WHERE { resource:Q22229640 property:P703 ?l . ?l rdf:type ontology:Q631147 }
Mycobacterium tuberculosis H37Rv
H Mycobacterium tuberculosis H37Rv
Mycobacterium tuberculosis H37Rv
action filter_type
action find
entity fructose 1,6-bisphosphatase    Rv1099c
relation found in taxon
type infraspecific name
['fructose 1,6-bisphosphatase    Rv1099c', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?l WHERE { resource:fructose_1,6-bisphosphatase____Rv1099c property:found_in_taxon ?l . ?l rdf:type ontology:infraspecific_name }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q21102987 Q22232023
P703
Q181394
USER
Is lipoprotein LprE    Rv1252c found in the taxon that infraspecific name ?
(Q22232023,P703,Q21102987)
action is_in
entity Q21102987
action find
entity Q22232023
relation P703
['Q22232023', 'P703', 'Q21102987']
ASK WHERE { resource:Q22232023 property:P703 resource:Q21102987 }
Mycobacterium tuberculosis H37Rv lipoprotein LprE    Rv1252c
action is_in
entity Mycobacterium tuberculosis H37Rv
action find
entity lipoprotein LprE    Rv1252c
relation found in taxon
['lipoprotein LprE    Rv1252c', 'found in taxon', 'Mycobacterium tuberculosis H37Rv']
ASK WHERE { resource:lipoprotein_LprE____Rv1252c property:found_in_taxon resource:Mycobacterium_tuberculosis_H37Rv }
[]
nutrient
SYSTEM
YES
(Q22232023,P703,Q21102987)
action is_in
entity Q21102987
action find
entity Q22232023
relation P703
[ANSWER]
['Q22232023', 'P703', 'Q21102987']
ASK WHERE { resource:Q22232023 property:P703 resource:Q21102987 }
Yes
action is_in
entity Mycobacterium tuberculosis H37Rv
action find
entity lipoprotein LprE    Rv1252c
relation found in taxon
['lipoprotein LprE    Rv1252c', 'found in taxon', 'Mycobacterium tuberculosis H37Rv']
ASK WHERE { resource:lipoprotein_LprE____Rv1252c property:found_in_taxon resource:Mycobacterium_tuberculosis_H37Rv }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type
Q22234339
P702
Q863908
USER
How many nucleic acid sequences encodes fructose 1,6-bisphosphatase    Rv1099c ?
(Q22234339,P702,c(Q863908))
action count
action filter_type
action find
entity Q22234339
relation P702
type Q863908
['Q22234339', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ( COUNT ( ?b ) AS ?p ) WHERE { resource:Q22234339 property:P702 ?b . ?b rdf:type ontology:Q863908 }
fructose 1,6-bisphosphatase    Rv1099c
action count
action filter_type
action find
entity fructose 1,6-bisphosphatase    Rv1099c
relation encoded by
type nucleic acid sequence
['fructose 1,6-bisphosphatase    Rv1099c', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ( COUNT ( ?b ) AS ?p ) WHERE { resource:fructose_1,6-bisphosphatase____Rv1099c property:encoded_by ?b . ?b rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
SYSTEM
1
Q22229640
(Q22234339,P702,c(Q863908))
action count
action filter_type
action find
entity Q22234339
relation P702
type Q863908
[ANSWER]
['Q22234339', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ( COUNT ( ?b ) AS ?p ) WHERE { resource:Q22234339 property:P702 ?b . ?b rdf:type ontology:Q863908 }
fructose 1,6-bisphosphatase    Rv1099c
1
action count
action filter_type
action find
entity fructose 1,6-bisphosphatase    Rv1099c
relation encoded by
type nucleic acid sequence
['fructose 1,6-bisphosphatase    Rv1099c', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ( COUNT ( ?b ) AS ?p ) WHERE { resource:fructose_1,6-bisphosphatase____Rv1099c property:encoded_by ?b . ?b rdf:type ontology:nucleic_acid_sequence }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Single entity type
Q22234339
P703
Q631147
USER
How many infraspecific names are fructose 1,6-bisphosphatase    Rv1099c a part of ?
(Q22234339,P703,c(Q631147))
action count
action filter_type
action find
entity Q22234339
relation P703
type Q631147
['Q22234339', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ( COUNT ( ?x ) AS ?e ) WHERE { ?x rdf:type ontology:Q631147 . resource:Q22234339 property:P703 ?x }
fructose 1,6-bisphosphatase    Rv1099c
action count
action filter_type
action find
entity fructose 1,6-bisphosphatase    Rv1099c
relation found in taxon
type infraspecific name
['fructose 1,6-bisphosphatase    Rv1099c', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ( COUNT ( ?x ) AS ?e ) WHERE { ?x rdf:type ontology:infraspecific_name . resource:fructose_1,6-bisphosphatase____Rv1099c property:found_in_taxon ?x }
[]
infraspecific name
SYSTEM
1
Q21102987
(Q22234339,P703,c(Q631147))
action count
action filter_type
action find
entity Q22234339
relation P703
type Q631147
[ANSWER]
['Q22234339', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ( COUNT ( ?x ) AS ?e ) WHERE { ?x rdf:type ontology:Q631147 . resource:Q22234339 property:P703 ?x }
Mycobacterium tuberculosis H37Rv
1
action count
action filter_type
action find
entity fructose 1,6-bisphosphatase    Rv1099c
relation found in taxon
type infraspecific name
['fructose 1,6-bisphosphatase    Rv1099c', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ( COUNT ( ?x ) AS ?e ) WHERE { ?x rdf:type ontology:infraspecific_name . resource:fructose_1,6-bisphosphatase____Rv1099c property:found_in_taxon ?x }
[]
Quantitative Reasoning (Count) (All)
Incomplete count-based ques
Q23171085
Q631147
USER
And what about glutathione S-transferase    SMc00097?
(Q23171085,P703,c(Q631147))
action count
action filter_type
action find
entity Q23171085
relation P703
type Q631147
['Q23171085', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ( COUNT ( ?p ) AS ?v ) WHERE { ?p rdf:type ontology:Q631147 . resource:Q23171085 property:P703 ?p }
glutathione S-transferase    SMc00097
action count
action filter_type
action find
entity glutathione S-transferase    SMc00097
relation found in taxon
type infraspecific name
['glutathione S-transferase    SMc00097', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ( COUNT ( ?p ) AS ?v ) WHERE { ?p rdf:type ontology:infraspecific_name . resource:glutathione_S-transferase____SMc00097 property:found_in_taxon ?p }
[]
infraspecific name
SYSTEM
1
(Q23171085,P703,c(Q631147))
action count
action filter_type
action find
entity Q23171085
relation P703
type Q631147
[ANSWER]
['Q23171085', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ( COUNT ( ?p ) AS ?v ) WHERE { ?p rdf:type ontology:Q631147 . resource:Q23171085 property:P703 ?p }
1
action count
action filter_type
action find
entity glutathione S-transferase    SMc00097
relation found in taxon
type infraspecific name
['glutathione S-transferase    SMc00097', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ( COUNT ( ?p ) AS ?v ) WHERE { ?p rdf:type ontology:infraspecific_name . resource:glutathione_S-transferase____SMc00097 property:found_in_taxon ?p }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q22235482 Q22234339
P703
Q631147
USER
Which infraspecific names are fructose 1,6-bisphosphatase    Rv1099c or lipoprotein LprI    Rv1541c found in ?
OR((Q22234339,P703,c(Q631147)), (Q22235482,P703,c(Q631147)))
action filter_type
action union
action find
entity Q22234339
relation P703
action find
entity Q22235482
relation P703
type Q631147
{'OR': [['Q22234339', 'P703', {'concept': 'Q631147'}], ['Q22235482', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?q WHERE { { { resource:Q22234339 property:P703 ?q } UNION { resource:Q22235482 property:P703 ?q } } . ?q rdf:type ontology:Q631147 }
lipoprotein LprI    Rv1541c fructose 1,6-bisphosphatase    Rv1099c
action filter_type
action union
action find
entity fructose 1,6-bisphosphatase    Rv1099c
relation found in taxon
action find
entity lipoprotein LprI    Rv1541c
relation found in taxon
type infraspecific name
{'OR': [['fructose 1,6-bisphosphatase    Rv1099c', 'found in taxon', {'concept': 'infraspecific name'}], ['lipoprotein LprI    Rv1541c', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?q WHERE { { { resource:fructose_1,6-bisphosphatase____Rv1099c property:found_in_taxon ?q } UNION { resource:lipoprotein_LprI____Rv1541c property:found_in_taxon ?q } } . ?q rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102987
SYSTEM
Mycobacterium tuberculosis H37Rv
Q21102987
OR((Q22234339,P703,c(Q631147)), (Q22235482,P703,c(Q631147)))
action filter_type
action union
action find
entity Q22234339
relation P703
action find
entity Q22235482
relation P703
type Q631147
Rv1099c or lipoprotein LprI Rv1541c found in tuberculosis [ANSWER]
{'OR': [['Q22234339', 'P703', {'concept': 'Q631147'}], ['Q22235482', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?q WHERE { { { resource:Q22234339 property:P703 ?q } UNION { resource:Q22235482 property:P703 ?q } } . ?q rdf:type ontology:Q631147 }
Mycobacterium tuberculosis H37Rv
Rv1099c or lipoprotein LprI Rv1541c found in tuberculosis Mycobacterium tuberculosis H37Rv
Mycobacterium tuberculosis H37Rv
action filter_type
action union
action find
entity fructose 1,6-bisphosphatase    Rv1099c
relation found in taxon
action find
entity lipoprotein LprI    Rv1541c
relation found in taxon
type infraspecific name
{'OR': [['fructose 1,6-bisphosphatase    Rv1099c', 'found in taxon', {'concept': 'infraspecific name'}], ['lipoprotein LprI    Rv1541c', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?q WHERE { { { resource:fructose_1,6-bisphosphatase____Rv1099c property:found_in_taxon ?q } UNION { resource:lipoprotein_LprI____Rv1541c property:found_in_taxon ?q } } . ?q rdf:type ontology:infraspecific_name }
[]