Simple Question (Direct)
Simple Question
Q21981639
P702
Q863908
USER
What encodes Acetylcholine receptor subunit delta ?
(Q21981639,P702,c(Q863908))
action filter_type
action find
entity Q21981639
relation P702
type Q863908
['Q21981639', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?t WHERE { resource:Q21981639 property:P702 ?t . ?t rdf:type ontology:Q863908 }
Acetylcholine receptor subunit delta
action filter_type
action find
entity Acetylcholine receptor subunit delta
relation encoded by
type nucleic acid sequence
['Acetylcholine receptor subunit delta', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?t WHERE { resource:Acetylcholine_receptor_subunit_delta property:encoded_by ?t . ?t rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18247376
SYSTEM
Chrnd
Q18247376
(Q21981639,P702,c(Q863908))
action filter_type
action find
entity Q21981639
relation P702
type Q863908
[ANSWER] encodes Acetylcholine receptor subunit delta
['Q21981639', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?t WHERE { resource:Q21981639 property:P702 ?t . ?t rdf:type ontology:Q863908 }
Chrnd
Chrnd encodes Acetylcholine receptor subunit delta
Chrnd
action filter_type
action find
entity Acetylcholine receptor subunit delta
relation encoded by
type nucleic acid sequence
['Acetylcholine receptor subunit delta', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?t WHERE { resource:Acetylcholine_receptor_subunit_delta property:encoded_by ?t . ?t rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21981639
P688
Q863908
USER
What is the nucleic acid sequence that is encoded by Acetylcholine receptor subunit delta ?
(c(Q863908),P688,Q21981639)
action filter_type
action find_reverse
entity Q21981639
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q21981639']
SELECT DISTINCT ?f WHERE { ?f property:P688 resource:Q21981639 . ?f rdf:type ontology:Q863908 }
Acetylcholine receptor subunit delta
action filter_type
action find_reverse
entity Acetylcholine receptor subunit delta
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Acetylcholine receptor subunit delta']
SELECT DISTINCT ?f WHERE { ?f property:encodes resource:Acetylcholine_receptor_subunit_delta . ?f rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18247376
SYSTEM
Chrnd
Q18247376
(c(Q863908),P688,Q21981639)
action filter_type
action find_reverse
entity Q21981639
relation P688
type Q863908
The nucleic acid sequence that is encoded by Acetylcholine receptor subunit delta is [ANSWER]
[{'concept': 'Q863908'}, 'P688', 'Q21981639']
SELECT DISTINCT ?f WHERE { ?f property:P688 resource:Q21981639 . ?f rdf:type ontology:Q863908 }
Chrnd
The nucleic acid sequence that is encoded by Acetylcholine receptor subunit delta is Chrnd
Chrnd
action filter_type
action find_reverse
entity Acetylcholine receptor subunit delta
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Acetylcholine receptor subunit delta']
SELECT DISTINCT ?f WHERE { ?f property:encodes resource:Acetylcholine_receptor_subunit_delta . ?f rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18247376
P684
Q863908
USER
Which is the species that has that one as its orthologous gene ?
(c(Q863908),P684,Q18247376)
action filter_type
action find
entity Q18247376
relation P684
type Q863908
[{'concept': 'Q863908'}, 'P684', 'Q18247376']
SELECT DISTINCT ?c WHERE { resource:Q18247376 property:P684 ?c . ?c rdf:type ontology:Q863908 }
Chrnd
action filter_type
action find
entity Chrnd
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'Chrnd']
SELECT DISTINCT ?c WHERE { resource:Chrnd property:ortholog ?c . ?c rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q17861985
SYSTEM
CHRND
Q17861985
(c(Q863908),P684,Q18247376)
action filter_type
action find
entity Q18247376
relation P684
type Q863908
[ANSWER] is the species that has that one as its orthologous gene
[{'concept': 'Q863908'}, 'P684', 'Q18247376']
SELECT DISTINCT ?c WHERE { resource:Q18247376 property:P684 ?c . ?c rdf:type ontology:Q863908 }
CHRND
CHRND is the species that has that one as its orthologous gene
CHRND
action filter_type
action find
entity Chrnd
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'Chrnd']
SELECT DISTINCT ?c WHERE { resource:Chrnd property:ortholog ?c . ?c rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|3 entities, 2 direct, 2(direct) are query entities, subject is indirect
Q17861985 Q21111180 Q27548027
P688
Q181394
USER
Does that nucleic acid sequence encodes Acetylcholine receptor subunit delta and cytochrome c isoform 1 YJR048W ?
(Q17861985,P688,Q21111180) (Q17861985,P688,Q27548027)
action is_in
entity Q17861985
action intersection
action find_reverse
entity Q21111180
relation P688
action find_reverse
entity Q27548027
relation P688
['Q17861985', 'P688', 'Q21111180'] ['Q17861985', 'P688', 'Q27548027']
ASK WHERE { resource:Q17861985 property:P688 resource:Q21111180 . resource:Q17861985 property:P688 resource:Q27548027 }
CHRND Acetylcholine receptor subunit delta cytochrome c isoform 1 YJR048W
action is_in
entity CHRND
action intersection
action find_reverse
entity Acetylcholine receptor subunit delta
relation encodes
action find_reverse
entity cytochrome c isoform 1 YJR048W
relation encodes
['CHRND', 'encodes', 'Acetylcholine receptor subunit delta'] ['CHRND', 'encodes', 'cytochrome c isoform 1 YJR048W']
ASK WHERE { resource:CHRND property:encodes resource:Acetylcholine_receptor_subunit_delta . resource:CHRND property:encodes resource:cytochrome_c_isoform_1_YJR048W }
[]
nutrient
SYSTEM
YES and NO respectively
(Q17861985,P688,Q21111180) (Q17861985,P688,Q27548027)
action is_in
entity Q17861985
action intersection
action find_reverse
entity Q21111180
relation P688
action find_reverse
entity Q27548027
relation P688
[ANSWER]
['Q17861985', 'P688', 'Q21111180'] ['Q17861985', 'P688', 'Q27548027']
ASK WHERE { resource:Q17861985 property:P688 resource:Q21111180 . resource:Q17861985 property:P688 resource:Q27548027 }
YES and NO respectively
action is_in
entity CHRND
action intersection
action find_reverse
entity Acetylcholine receptor subunit delta
relation encodes
action find_reverse
entity cytochrome c isoform 1 YJR048W
relation encodes
['CHRND', 'encodes', 'Acetylcholine receptor subunit delta'] ['CHRND', 'encodes', 'cytochrome c isoform 1 YJR048W']
ASK WHERE { resource:CHRND property:encodes resource:Acetylcholine_receptor_subunit_delta . resource:CHRND property:encodes resource:cytochrome_c_isoform_1_YJR048W }
[]
Verification (Boolean) (All)
Verification|3 entities, all direct, 2 are query entities
Q18247376 Q21498024 Q23584105
P688
Q181394
USER
Does Chrnd encode Coiled-coil domain-containing protein 162 and hypothetical protein    GSU0494 ?
(Q18247376,P688,Q21498024) (Q18247376,P688,Q23584105)
action is_in
entity Q18247376
action intersection
action find_reverse
entity Q21498024
relation P688
action find_reverse
entity Q23584105
relation P688
['Q18247376', 'P688', 'Q21498024'] ['Q18247376', 'P688', 'Q23584105']
ASK WHERE { resource:Q18247376 property:P688 resource:Q21498024 . resource:Q18247376 property:P688 resource:Q23584105 }
Chrnd Coiled-coil domain-containing protein 162 hypothetical protein    GSU0494
action is_in
entity Chrnd
action intersection
action find_reverse
entity Coiled-coil domain-containing protein 162
relation encodes
action find_reverse
entity hypothetical protein    GSU0494
relation encodes
['Chrnd', 'encodes', 'Coiled-coil domain-containing protein 162'] ['Chrnd', 'encodes', 'hypothetical protein    GSU0494']
ASK WHERE { resource:Chrnd property:encodes resource:Coiled-coil_domain-containing_protein_162 . resource:Chrnd property:encodes resource:hypothetical_protein____GSU0494 }
[]
nutrient
SYSTEM
NO
(Q18247376,P688,Q21498024) (Q18247376,P688,Q23584105)
action is_in
entity Q18247376
action intersection
action find_reverse
entity Q21498024
relation P688
action find_reverse
entity Q23584105
relation P688
[ANSWER]
['Q18247376', 'P688', 'Q21498024'] ['Q18247376', 'P688', 'Q23584105']
ASK WHERE { resource:Q18247376 property:P688 resource:Q21498024 . resource:Q18247376 property:P688 resource:Q23584105 }
No
action is_in
entity Chrnd
action intersection
action find_reverse
entity Coiled-coil domain-containing protein 162
relation encodes
action find_reverse
entity hypothetical protein    GSU0494
relation encodes
['Chrnd', 'encodes', 'Coiled-coil domain-containing protein 162'] ['Chrnd', 'encodes', 'hypothetical protein    GSU0494']
ASK WHERE { resource:Chrnd property:encodes resource:Coiled-coil_domain-containing_protein_162 . resource:Chrnd property:encodes resource:hypothetical_protein____GSU0494 }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q18247376
P703
Q16521
USER
Where is Chrnd found ?
(Q18247376,P703,c(Q16521))
action filter_type
action find
entity Q18247376
relation P703
type Q16521
['Q18247376', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?r WHERE { resource:Q18247376 property:P703 ?r . ?r rdf:type ontology:Q16521 }
Chrnd
action filter_type
action find
entity Chrnd
relation found in taxon
type taxon
['Chrnd', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?r WHERE { resource:Chrnd property:found_in_taxon ?r . ?r rdf:type ontology:taxon }
[]
taxon
Q83310
SYSTEM
Mus musculus
Q83310
(Q18247376,P703,c(Q16521))
action filter_type
action find
entity Q18247376
relation P703
type Q16521
Chrnd is found in [ANSWER]
['Q18247376', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?r WHERE { resource:Q18247376 property:P703 ?r . ?r rdf:type ontology:Q16521 }
Mus musculus
Chrnd is found in Mus musculus
Mus musculus
action filter_type
action find
entity Chrnd
relation found in taxon
type taxon
['Chrnd', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?r WHERE { resource:Chrnd property:found_in_taxon ?r . ?r rdf:type ontology:taxon }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q83310 Q23599432
P703
Q181394
USER
Is DNA-binding cold shock protein CspD    SO_2628 found in the taxon that one ?
(Q23599432,P703,Q83310)
action is_in
entity Q23599432
action find
entity Q83310
relation P703
['Q23599432', 'P703', 'Q83310']
ASK WHERE { resource:Q83310 property:P703 resource:Q23599432 }
Mus musculus DNA-binding cold shock protein CspD    SO_2628
action is_in
entity DNA-binding cold shock protein CspD    SO_2628
action find
entity Mus musculus
relation found in taxon
['DNA-binding cold shock protein CspD    SO_2628', 'found in taxon', 'Mus musculus']
ASK WHERE { resource:Mus_musculus property:found_in_taxon resource:DNA-binding_cold_shock_protein_CspD____SO_2628 }
[]
nutrient
SYSTEM
NO
(Q23599432,P703,Q83310)
action is_in
entity Q23599432
action find
entity Q83310
relation P703
[ANSWER]
['Q23599432', 'P703', 'Q83310']
ASK WHERE { resource:Q83310 property:P703 resource:Q23599432 }
No
action is_in
entity DNA-binding cold shock protein CspD    SO_2628
action find
entity Mus musculus
relation found in taxon
['DNA-binding cold shock protein CspD    SO_2628', 'found in taxon', 'Mus musculus']
ASK WHERE { resource:Mus_musculus property:found_in_taxon resource:DNA-binding_cold_shock_protein_CspD____SO_2628 }
[]
Logical Reasoning (All)
Logical|Intersection|Single_Relation
Q23287199 Q23584105
P703
Q631147
USER
Which infraspecific names are hypothetical protein    GSU0494 and acyl-CoA thioesterase    GSU0239 found ?
AND((Q23584105,P703,c(Q631147)), (Q23287199,P703,c(Q631147)))
action filter_type
action intersection
action find
entity Q23584105
relation P703
action find
entity Q23287199
relation P703
type Q631147
{'AND': [['Q23584105', 'P703', {'concept': 'Q631147'}], ['Q23287199', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?k WHERE { ?k rdf:type ontology:Q631147 . resource:Q23287199 property:P703 ?k . resource:Q23584105 property:P703 ?k }
acyl-CoA thioesterase    GSU0239 hypothetical protein    GSU0494
action filter_type
action intersection
action find
entity hypothetical protein    GSU0494
relation found in taxon
action find
entity acyl-CoA thioesterase    GSU0239
relation found in taxon
type infraspecific name
{'AND': [['hypothetical protein    GSU0494', 'found in taxon', {'concept': 'infraspecific name'}], ['acyl-CoA thioesterase    GSU0239', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?k WHERE { ?k rdf:type ontology:infraspecific_name . resource:acyl-CoA_thioesterase____GSU0239 property:found_in_taxon ?k . resource:hypothetical_protein____GSU0494 property:found_in_taxon ?k }
[]
infraspecific name
Q21102999
SYSTEM
Geobacter sulfurreducens PCA
Q21102999
AND((Q23584105,P703,c(Q631147)), (Q23287199,P703,c(Q631147)))
action filter_type
action intersection
action find
entity Q23584105
relation P703
action find
entity Q23287199
relation P703
type Q631147
[ANSWER] is hypothetical protein GSU0494 and acyl-CoA thioesterase GSU0239 found
{'AND': [['Q23584105', 'P703', {'concept': 'Q631147'}], ['Q23287199', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?k WHERE { ?k rdf:type ontology:Q631147 . resource:Q23287199 property:P703 ?k . resource:Q23584105 property:P703 ?k }
Geobacter sulfurreducens PCA
Geobacter sulfurreducens PCA is hypothetical protein GSU0494 and acyl-CoA thioesterase GSU0239 found
Geobacter sulfurreducens PCA
action filter_type
action intersection
action find
entity hypothetical protein    GSU0494
relation found in taxon
action find
entity acyl-CoA thioesterase    GSU0239
relation found in taxon
type infraspecific name
{'AND': [['hypothetical protein    GSU0494', 'found in taxon', {'concept': 'infraspecific name'}], ['acyl-CoA thioesterase    GSU0239', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?k WHERE { ?k rdf:type ontology:infraspecific_name . resource:acyl-CoA_thioesterase____GSU0239 property:found_in_taxon ?k . resource:hypothetical_protein____GSU0494 property:found_in_taxon ?k }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q21102999 Q23285869
P703
Q863908
USER
Is LysR family transcriptional regulator    GSU2523 found in that infraspecific name ?
(Q23285869,P703,Q21102999)
action is_in
entity Q21102999
action find
entity Q23285869
relation P703
['Q23285869', 'P703', 'Q21102999']
ASK WHERE { resource:Q23285869 property:P703 resource:Q21102999 }
Geobacter sulfurreducens PCA LysR family transcriptional regulator    GSU2523
action is_in
entity Geobacter sulfurreducens PCA
action find
entity LysR family transcriptional regulator    GSU2523
relation found in taxon
['LysR family transcriptional regulator    GSU2523', 'found in taxon', 'Geobacter sulfurreducens PCA']
ASK WHERE { resource:LysR_family_transcriptional_regulator____GSU2523 property:found_in_taxon resource:Geobacter_sulfurreducens_PCA }
[]
nucleic acid sequence
SYSTEM
YES
(Q23285869,P703,Q21102999)
action is_in
entity Q21102999
action find
entity Q23285869
relation P703
[ANSWER]
['Q23285869', 'P703', 'Q21102999']
ASK WHERE { resource:Q23285869 property:P703 resource:Q21102999 }
Yes
action is_in
entity Geobacter sulfurreducens PCA
action find
entity LysR family transcriptional regulator    GSU2523
relation found in taxon
['LysR family transcriptional regulator    GSU2523', 'found in taxon', 'Geobacter sulfurreducens PCA']
ASK WHERE { resource:LysR_family_transcriptional_regulator____GSU2523 property:found_in_taxon resource:Geobacter_sulfurreducens_PCA }
[]