Simple Question (Direct)
Simple Question
Q23514668
P703
Q631147
USER
Which infraspecific name is lipoate-protein ligase LplJ    BSU10250 found in ?
(Q23514668,P703,c(Q631147))
action filter_type
action find
entity Q23514668
relation P703
type Q631147
['Q23514668', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?v WHERE { resource:Q23514668 property:P703 ?v . ?v rdf:type ontology:Q631147 }
lipoate-protein ligase LplJ    BSU10250
action filter_type
action find
entity lipoate-protein ligase LplJ    BSU10250
relation found in taxon
type infraspecific name
['lipoate-protein ligase LplJ    BSU10250', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?v WHERE { resource:lipoate-protein_ligase_LplJ____BSU10250 property:found_in_taxon ?v . ?v rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102971
SYSTEM
Bacillus subtilis subsp. subtilis str. 168
Q21102971
(Q23514668,P703,c(Q631147))
action filter_type
action find
entity Q23514668
relation P703
type Q631147
[ANSWER]
['Q23514668', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?v WHERE { resource:Q23514668 property:P703 ?v . ?v rdf:type ontology:Q631147 }
Bacillus subtilis subsp. subtilis str. 168
Bacillus subtilis subsp. subtilis str. 168
action filter_type
action find
entity lipoate-protein ligase LplJ    BSU10250
relation found in taxon
type infraspecific name
['lipoate-protein ligase LplJ    BSU10250', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?v WHERE { resource:lipoate-protein_ligase_LplJ____BSU10250 property:found_in_taxon ?v . ?v rdf:type ontology:infraspecific_name }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23514668
P702
Q863908
USER
What encodes that nutrient ?
(Q21102971,P702,c(Q863908))
action filter_type
action find
entity Q23514668
relation P702
type Q863908
['Q21102971', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?w WHERE { resource:Q23514668 property:P702 ?w . ?w rdf:type ontology:Q863908 }
lipoate-protein ligase LplJ    BSU10250
action filter_type
action find
entity lipoate-protein ligase LplJ    BSU10250
relation encoded by
type nucleic acid sequence
['Bacillus subtilis subsp. subtilis str. 168', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?w WHERE { resource:lipoate-protein_ligase_LplJ____BSU10250 property:encoded_by ?w . ?w rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23349236
SYSTEM
lipoate-protein ligase LplJ    BSU10250
Q23349236
(Q21102971,P702,c(Q863908))
action filter_type
action find
entity Q23514668
relation P702
type Q863908
[ANSWER]
['Q21102971', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?w WHERE { resource:Q23514668 property:P702 ?w . ?w rdf:type ontology:Q863908 }
lipoate-protein ligase LplJ    BSU10250
lipoate-protein ligase LplJ    BSU10250
action filter_type
action find
entity lipoate-protein ligase LplJ    BSU10250
relation encoded by
type nucleic acid sequence
['Bacillus subtilis subsp. subtilis str. 168', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?w WHERE { resource:lipoate-protein_ligase_LplJ____BSU10250 property:encoded_by ?w . ?w rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23514668
P688
Q863908
USER
What is the nucleic acid sequence that is encoded by lipoate-protein ligase LplJ    BSU10250 ?
(c(Q863908),P688,Q23514668)
action filter_type
action find_reverse
entity Q23514668
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q23514668']
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:Q863908 . ?s property:P688 resource:Q23514668 }
lipoate-protein ligase LplJ    BSU10250
action filter_type
action find_reverse
entity lipoate-protein ligase LplJ    BSU10250
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'lipoate-protein ligase LplJ    BSU10250']
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:nucleic_acid_sequence . ?s property:encodes resource:lipoate-protein_ligase_LplJ____BSU10250 }
[]
nucleic acid sequence
Q23349236
SYSTEM
lipoate-protein ligase LplJ    BSU10250
Q23349236
(c(Q863908),P688,Q23514668)
action filter_type
action find_reverse
entity Q23514668
relation P688
type Q863908
[ANSWER]
[{'concept': 'Q863908'}, 'P688', 'Q23514668']
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:Q863908 . ?s property:P688 resource:Q23514668 }
lipoate-protein ligase LplJ    BSU10250
lipoate-protein ligase LplJ    BSU10250
action filter_type
action find_reverse
entity lipoate-protein ligase LplJ    BSU10250
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'lipoate-protein ligase LplJ    BSU10250']
SELECT DISTINCT ?s WHERE { ?s rdf:type ontology:nucleic_acid_sequence . ?s property:encodes resource:lipoate-protein_ligase_LplJ____BSU10250 }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23514668
P681
Q15989253
USER
Which is the part that is a component of lipoate-protein ligase LplJ    BSU10250 ?
(Q23514668,P681,c(Q15989253))
action filter_type
action find
entity Q23514668
relation P681
type Q15989253
['Q23514668', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?f WHERE { resource:Q23514668 property:P681 ?f . ?f rdf:type ontology:Q15989253 }
lipoate-protein ligase LplJ    BSU10250
action filter_type
action find
entity lipoate-protein ligase LplJ    BSU10250
relation cell component
type part
['lipoate-protein ligase LplJ    BSU10250', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?f WHERE { resource:lipoate-protein_ligase_LplJ____BSU10250 property:cell_component ?f . ?f rdf:type ontology:part }
[]
part
Q79899
SYSTEM
cytoplasm
Q79899
(Q23514668,P681,c(Q15989253))
action filter_type
action find
entity Q23514668
relation P681
type Q15989253
[ANSWER]
['Q23514668', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?f WHERE { resource:Q23514668 property:P681 ?f . ?f rdf:type ontology:Q15989253 }
cytoplasm
cytoplasm
action filter_type
action find
entity lipoate-protein ligase LplJ    BSU10250
relation cell component
type part
['lipoate-protein ligase LplJ    BSU10250', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?f WHERE { resource:lipoate-protein_ligase_LplJ____BSU10250 property:cell_component ?f . ?f rdf:type ontology:part }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q24100960
Q15989253
USER
And what about ATP-dependent protease ATP-binding subunit HslU    XCC3493?
(Q24100960,P681,c(Q15989253))
action filter_type
action find
entity Q24100960
relation P681
type Q15989253
['Q24100960', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?y WHERE { ?y rdf:type ontology:Q15989253 . resource:Q24100960 property:P681 ?y }
ATP-dependent protease ATP-binding subunit HslU    XCC3493
action filter_type
action find
entity ATP-dependent protease ATP-binding subunit HslU    XCC3493
relation cell component
type part
['ATP-dependent protease ATP-binding subunit HslU    XCC3493', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?y WHERE { ?y rdf:type ontology:part . resource:ATP-dependent_protease_ATP-binding_subunit_HslU____XCC3493 property:cell_component ?y }
[]
part
Q79899
SYSTEM
cytoplasm
Q79899
(Q24100960,P681,c(Q15989253))
action filter_type
action find
entity Q24100960
relation P681
type Q15989253
[ANSWER]
['Q24100960', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?y WHERE { ?y rdf:type ontology:Q15989253 . resource:Q24100960 property:P681 ?y }
cytoplasm
cytoplasm
action filter_type
action find
entity ATP-dependent protease ATP-binding subunit HslU    XCC3493
relation cell component
type part
['ATP-dependent protease ATP-binding subunit HslU    XCC3493', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?y WHERE { ?y rdf:type ontology:part . resource:ATP-dependent_protease_ATP-binding_subunit_HslU____XCC3493 property:cell_component ?y }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q79899 Q23597484
P681
Q181394
USER
Is that part a cell component of tyrosine recombinase XerC    SO_4306 ?
(Q23597484,P681,Q79899)
action is_in
entity Q79899
action find
entity Q23597484
relation P681
['Q23597484', 'P681', 'Q79899']
ASK WHERE { resource:Q23597484 property:P681 resource:Q79899 }
cytoplasm tyrosine recombinase XerC    SO_4306
action is_in
entity cytoplasm
action find
entity tyrosine recombinase XerC    SO_4306
relation cell component
['tyrosine recombinase XerC    SO_4306', 'cell component', 'cytoplasm']
ASK WHERE { resource:tyrosine_recombinase_XerC____SO_4306 property:cell_component resource:cytoplasm }
[]
nutrient
SYSTEM
YES
(Q23597484,P681,Q79899)
action is_in
entity Q79899
action find
entity Q23597484
relation P681
[ANSWER]
['Q23597484', 'P681', 'Q79899']
ASK WHERE { resource:Q23597484 property:P681 resource:Q79899 }
Yes
action is_in
entity cytoplasm
action find
entity tyrosine recombinase XerC    SO_4306
relation cell component
['tyrosine recombinase XerC    SO_4306', 'cell component', 'cytoplasm']
ASK WHERE { resource:tyrosine_recombinase_XerC____SO_4306 property:cell_component resource:cytoplasm }
[]