Simple Question (Direct)
Simple Question
Q21991728
P681
Q15989253
USER
Which parts are components of Sex-determining region Y protein ?
(Q21991728,P681,c(Q15989253))
action filter_type
action find
entity Q21991728
relation P681
type Q15989253
['Q21991728', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?k WHERE { resource:Q21991728 property:P681 ?k . ?k rdf:type ontology:Q15989253 }
Sex-determining region Y protein
action filter_type
action find
entity Sex-determining region Y protein
relation cell component
type part
['Sex-determining region Y protein', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?k WHERE { resource:Sex-determining_region_Y_protein property:cell_component ?k . ?k rdf:type ontology:part }
[]
part
Q79899 Q40260
SYSTEM
cytoplasm, nucleus
Q79899 Q40260
(Q21991728,P681,c(Q15989253))
action filter_type
action find
entity Q21991728
relation P681
type Q15989253
[ANSWERS] are components of Sex-determining region Y protein
['Q21991728', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?k WHERE { resource:Q21991728 property:P681 ?k . ?k rdf:type ontology:Q15989253 }
cytoplasm nucleus
Cytoplasm and nucleus are components of Sex-determining region Y protein
cytoplasm nucleus
action filter_type
action find
entity Sex-determining region Y protein
relation cell component
type part
['Sex-determining region Y protein', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?k WHERE { resource:Sex-determining_region_Y_protein property:cell_component ?k . ?k rdf:type ontology:part }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21991728
P702
Q863908
USER
What encodes Sex-determining region Y protein ?
(Q21991728,P702,c(Q863908))
action filter_type
action find
entity Q21991728
relation P702
type Q863908
['Q21991728', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:Q863908 . resource:Q21991728 property:P702 ?j }
Sex-determining region Y protein
action filter_type
action find
entity Sex-determining region Y protein
relation encoded by
type nucleic acid sequence
['Sex-determining region Y protein', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:nucleic_acid_sequence . resource:Sex-determining_region_Y_protein property:encoded_by ?j }
[]
nucleic acid sequence
Q18254912
SYSTEM
Sry
Q18254912
(Q21991728,P702,c(Q863908))
action filter_type
action find
entity Q21991728
relation P702
type Q863908
En [ANSWER] encodes Sex-determining region Y protein
['Q21991728', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:Q863908 . resource:Q21991728 property:P702 ?j }
Sry
En Sry encodes Sex-determining region Y protein
Sry
action filter_type
action find
entity Sex-determining region Y protein
relation encoded by
type nucleic acid sequence
['Sex-determining region Y protein', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?j WHERE { ?j rdf:type ontology:nucleic_acid_sequence . resource:Sex-determining_region_Y_protein property:encoded_by ?j }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q23491934
Q863908
USER
And how about protease    SMU_759?
(Q23491934,P702,c(Q863908))
action filter_type
action find
entity Q23491934
relation P702
type Q863908
['Q23491934', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?u WHERE { resource:Q23491934 property:P702 ?u . ?u rdf:type ontology:Q863908 }
protease    SMU_759
action filter_type
action find
entity protease    SMU_759
relation encoded by
type nucleic acid sequence
['protease    SMU_759', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?u WHERE { resource:protease____SMU_759 property:encoded_by ?u . ?u rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23219916
SYSTEM
protease    SMU_759
Q23219916
(Q23491934,P702,c(Q863908))
action filter_type
action find
entity Q23491934
relation P702
type Q863908
[ANSWER]
['Q23491934', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?u WHERE { resource:Q23491934 property:P702 ?u . ?u rdf:type ontology:Q863908 }
protease    SMU_759
protease    SMU_759
action filter_type
action find
entity protease    SMU_759
relation encoded by
type nucleic acid sequence
['protease    SMU_759', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?u WHERE { resource:protease____SMU_759 property:encoded_by ?u . ?u rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q23219916
P688
Q181394
USER
What is encoded by that nucleic acid sequence ?
(Q23219916,P688,c(Q181394))
action filter_type
action find
entity Q23219916
relation P688
type Q181394
['Q23219916', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?d WHERE { resource:Q23219916 property:P688 ?d . ?d rdf:type ontology:Q181394 }
protease    SMU_759
action filter_type
action find
entity protease    SMU_759
relation encodes
type nutrient
['protease    SMU_759', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?d WHERE { resource:protease____SMU_759 property:encodes ?d . ?d rdf:type ontology:nutrient }
[]
nutrient
Q23491934
SYSTEM
protease    SMU_759
Q23491934
(Q23219916,P688,c(Q181394))
action filter_type
action find
entity Q23219916
relation P688
type Q181394
Protease SMU 759 is encoded by that nucleic acid sequence
['Q23219916', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ?d WHERE { resource:Q23219916 property:P688 ?d . ?d rdf:type ontology:Q181394 }
protease    SMU_759
Protease SMU 759 is encoded by that nucleic acid sequence
protease    SMU_759
action filter_type
action find
entity protease    SMU_759
relation encodes
type nutrient
['protease    SMU_759', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ?d WHERE { resource:protease____SMU_759 property:encodes ?d . ?d rdf:type ontology:nutrient }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23219916
P703
Q631147
USER
Which infraspecific name is protease    SMU_759 found in ?
(Q23219916,P703,c(Q631147))
action filter_type
action find
entity Q23219916
relation P703
type Q631147
['Q23219916', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?n WHERE { resource:Q23219916 property:P703 ?n . ?n rdf:type ontology:Q631147 }
protease    SMU_759
action filter_type
action find
entity protease    SMU_759
relation found in taxon
type infraspecific name
['protease    SMU_759', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?n WHERE { resource:protease____SMU_759 property:found_in_taxon ?n . ?n rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102961
SYSTEM
Streptococcus mutans UA159
Q21102961
(Q23219916,P703,c(Q631147))
action filter_type
action find
entity Q23219916
relation P703
type Q631147
Protease SMU_759 is found in [ANSWER]
['Q23219916', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?n WHERE { resource:Q23219916 property:P703 ?n . ?n rdf:type ontology:Q631147 }
Streptococcus mutans UA159
Protease SMU_759 is found in Streptococcus mutans UA159
Streptococcus mutans UA159
action filter_type
action find
entity protease    SMU_759
relation found in taxon
type infraspecific name
['protease    SMU_759', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?n WHERE { resource:protease____SMU_759 property:found_in_taxon ?n . ?n rdf:type ontology:infraspecific_name }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q24253395
Q631147
USER
And what about hypothetical protein    lmo1690?
(Q24253395,P703,c(Q631147))
action filter_type
action find
entity Q24253395
relation P703
type Q631147
['Q24253395', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?n WHERE { resource:Q24253395 property:P703 ?n . ?n rdf:type ontology:Q631147 }
hypothetical protein    lmo1690
action filter_type
action find
entity hypothetical protein    lmo1690
relation found in taxon
type infraspecific name
['hypothetical protein    lmo1690', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?n WHERE { resource:hypothetical_protein____lmo1690 property:found_in_taxon ?n . ?n rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102981
SYSTEM
Listeria monocytogenes EGD-e
Q21102981
(Q24253395,P703,c(Q631147))
action filter_type
action find
entity Q24253395
relation P703
type Q631147
[ANSWER]
['Q24253395', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?n WHERE { resource:Q24253395 property:P703 ?n . ?n rdf:type ontology:Q631147 }
Listeria monocytogenes EGD-e
Listeria monocytogenes EGD-e
action filter_type
action find
entity hypothetical protein    lmo1690
relation found in taxon
type infraspecific name
['hypothetical protein    lmo1690', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?n WHERE { resource:hypothetical_protein____lmo1690 property:found_in_taxon ?n . ?n rdf:type ontology:infraspecific_name }
[]
Comparative Reasoning (All)
Comparative|More/Less|Single entity type|Indirect
P703
Q631147 Q863908
USER
Which infraspecific names are around the same number of nucleic acid sequences found in as that infraspecific name ?
(c(Q863908),P703,c(Q631147))
action approx
action find_reverse_tuple_counts
relation P703
type Q631147
type Q863908
action count
action filter_type
action find
entity Q21102981
relation P703
type Q631147
[{'concept': 'Q863908'}, 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?j WHERE { { SELECT DISTINCT ?j ( COUNT ( ?p ) AS ?b ) WHERE { ?p property:P703 ?j . ?j rdf:type ontology:Q631147 . ?p rdf:type ontology:Q863908 } GROUP BY ?j } . { SELECT DISTINCT ( COUNT ( ?u ) AS ?r ) WHERE { ?u rdf:type ontology:Q631147 . resource:Q21102981 property:P703 ?u } } . FILTER ( ?b = ?r ) }
action approx
action find_reverse_tuple_counts
relation found in taxon
type infraspecific name
type nucleic acid sequence
action count
action filter_type
action find
entity Listeria monocytogenes EGD-e
relation found in taxon
type infraspecific name
[{'concept': 'nucleic acid sequence'}, 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?j WHERE { { SELECT DISTINCT ?j ( COUNT ( ?p ) AS ?b ) WHERE { ?p property:found_in_taxon ?j . ?j rdf:type ontology:infraspecific_name . ?p rdf:type ontology:nucleic_acid_sequence } GROUP BY ?j } . { SELECT DISTINCT ( COUNT ( ?u ) AS ?r ) WHERE { ?u rdf:type ontology:infraspecific_name . resource:Listeria_monocytogenes_EGD-e property:found_in_taxon ?u } } . FILTER ( ?b = ?r ) }
[]
infraspecific name nucleic acid sequence
Q21102919 Q21079559 Q21102991
SYSTEM
Legionella pneumophila subsp. pneumophila str. Philadelphia 1, Salinibacter ruber DSM 13855, Thermotoga maritima MSB8
Q21102991 Q21102992 Q21102994 Q21102996 Q21102997 Q21102999 Q21102960 Q21065229 Q21102919 Q21102943 Q21102942 Q21102941 Q21102940 Q21102946 Q21102920 Q21102965 Q21102964 Q21102966 Q21102961 Q21102963 Q21102962 Q21102921 Q21102987 Q21102922 Q21102925 Q21102974 Q21079491 Q21102985 Q21102984 Q21102983 Q21102982 Q21102981 Q21102980 Q21102973 Q21102944 Q21102954 Q21102955 Q21102956 Q21102957 Q21102951 Q21102978 Q21102953 Q21102976 Q21102977 Q21102975 Q21102959 Q21102971 Q21064863 Q21064832 Q21102948 Q21102979 Q21079559 Q21102938 Q21102967
(c(Q863908),P703,c(Q631147))
action approx
action find_reverse_tuple_counts
relation P703
type Q631147
type Q863908
action count
action filter_type
action find
entity Q21102981
relation P703
type Q631147
[ANSWERS] are around the same number of nucleic acid sequences found in as that infraspecific name
[{'concept': 'Q863908'}, 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?j WHERE { { SELECT DISTINCT ?j ( COUNT ( ?p ) AS ?b ) WHERE { ?p property:P703 ?j . ?j rdf:type ontology:Q631147 . ?p rdf:type ontology:Q863908 } GROUP BY ?j } . { SELECT DISTINCT ( COUNT ( ?u ) AS ?r ) WHERE { ?u rdf:type ontology:Q631147 . resource:Q21102981 property:P703 ?u } } . FILTER ( ?b = ?r ) }
Thermotoga maritima MSB8 Gardnerella vaginalis ATCC 14019 Streptococcus mitis B6 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Salmonella enterica subsp. enterica serovar Typhi str. CT18 Geobacter sulfurreducens PCA Streptococcus suis BM407 Leptospira interrogans serovar Lai str. 56601 Legionella pneumophila subsp. pneumophila str. Philadelphia 1 Yersinia pestis CO92 Yersinia enterocolitica subsp. enterocolitica 8081 Shigella flexneri 2a str. 301 Shigella dysenteriae Sd197 Vibrio fischeri ES114 Acinetobacter pittii PHEA-2 Enterococcus faecalis V583 Streptococcus pyogenes M1 GAS Enterococcus faecium DO Streptococcus mutans UA159 Streptococcus pneumoniae R6 Streptococcus agalactiae 2603V/R Neisseria gonorrhoeae FA 1090 Mycobacterium tuberculosis H37Rv Neisseria meningitidis MC58 Bordetella pertussis Tohama I Clostridium botulinum A str. Hall Xanthomonas campestris pv. campestris str. ATCC 33913 Mycobacterium leprae TN Mycobacterium bovis AF2122/97 Corynebacterium glutamicum ATCC 13032 Bifidobacterium bifidum PRL2010 Listeria monocytogenes EGD-e Lactobacillus salivarius UCC118 Clostridium acetobutylicum ATCC 824 Aeromonas hydrophila subsp. hydrophila ATCC 7966 Rhodospirillum rubrum ATCC 11170 Chloroflexus aurantiacus J-10-fl Staphylococcus aureus subsp. aureus NCTC 8325 Staphylococcus epidermidis ATCC 12228 Fusobacterium nucleatum subsp. nucleatum ATCC 25586 Lactobacillus casei ATCC 334 Rhodobacter sphaeroides 2.4.1 Peptoclostridium difficile 630 Lactobacillus acidophilus NCFM Clostridium botulinum A str. ATCC 3502 Deinococcus radiodurans R1 Bacillus subtilis subsp. subtilis str. 168 Bordetella parapertussis Bpp5 Coxiella burnetii RSA 493 Haemophilus influenzae Rd KW20 Lactobacillus plantarum WCFS1 Salinibacter ruber DSM 13855 Escherichia coli str. K-12 substr. MG1655 Lactococcus lactis subsp. lactis Il1403
Legionella pneumophila subsp. pneumophila str. Philadelphia 1, Salinibacter ruber DSM 13855 and Thermotoga maritima MSB8 are around the same number of nucleic acid sequences found in as that infraspecific name
Legionella pneumophila subsp. pneumophila str. Philadelphia 1 Salinibacter ruber DSM 13855 Thermotoga maritima MSB8
action approx
action find_reverse_tuple_counts
relation found in taxon
type infraspecific name
type nucleic acid sequence
action count
action filter_type
action find
entity Listeria monocytogenes EGD-e
relation found in taxon
type infraspecific name
[{'concept': 'nucleic acid sequence'}, 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?j WHERE { { SELECT DISTINCT ?j ( COUNT ( ?p ) AS ?b ) WHERE { ?p property:found_in_taxon ?j . ?j rdf:type ontology:infraspecific_name . ?p rdf:type ontology:nucleic_acid_sequence } GROUP BY ?j } . { SELECT DISTINCT ( COUNT ( ?u ) AS ?r ) WHERE { ?u rdf:type ontology:infraspecific_name . resource:Listeria_monocytogenes_EGD-e property:found_in_taxon ?u } } . FILTER ( ?b = ?r ) }
[]
Quantitative Reasoning (Count) (All)
Incomplete count-based ques
Q21079559
Q5962346
USER
And what about Salinibacter ruber DSM 13855?
(Q21079559,P276,c(Q5962346))
action count
action filter_type
action find
entity Q21079559
relation P276
type Q5962346
['Q21079559', 'P276', {'concept': 'Q5962346'}]
SELECT DISTINCT ( COUNT ( ?l ) AS ?b ) WHERE { resource:Q21079559 property:P276 ?l . ?l rdf:type ontology:Q5962346 }
Salinibacter ruber DSM 13855
action count
action filter_type
action find
entity Salinibacter ruber DSM 13855
relation location
type classification scheme
['Salinibacter ruber DSM 13855', 'location', {'concept': 'classification scheme'}]
SELECT DISTINCT ( COUNT ( ?l ) AS ?b ) WHERE { resource:Salinibacter_ruber_DSM_13855 property:location ?l . ?l rdf:type ontology:classification_scheme }
[]
classification scheme
SYSTEM
1
(Q21079559,P276,c(Q5962346))
action count
action filter_type
action find
entity Q21079559
relation P276
type Q5962346
[ANSWER]
['Q21079559', 'P276', {'concept': 'Q5962346'}]
SELECT DISTINCT ( COUNT ( ?l ) AS ?b ) WHERE { resource:Q21079559 property:P276 ?l . ?l rdf:type ontology:Q5962346 }
1
action count
action filter_type
action find
entity Salinibacter ruber DSM 13855
relation location
type classification scheme
['Salinibacter ruber DSM 13855', 'location', {'concept': 'classification scheme'}]
SELECT DISTINCT ( COUNT ( ?l ) AS ?b ) WHERE { resource:Salinibacter_ruber_DSM_13855 property:location ?l . ?l rdf:type ontology:classification_scheme }
[]