Simple Question (Direct)
Simple Question
Q23501310
P682
Q1057
USER
Which metabolic process is phage integrase family site specific recombinase    EF1648 involved in ?
(Q23501310,P682,c(Q1057))
action filter_type
action find
entity Q23501310
relation P682
type Q1057
['Q23501310', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?n WHERE { resource:Q23501310 property:P682 ?n . ?n rdf:type ontology:Q1057 }
phage integrase family site specific recombinase    EF1648
action filter_type
action find
entity phage integrase family site specific recombinase    EF1648
relation biological process
type metabolic process
['phage integrase family site specific recombinase    EF1648', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?n WHERE { resource:phage_integrase_family_site_specific_recombinase____EF1648 property:biological_process ?n . ?n rdf:type ontology:metabolic_process }
[]
metabolic process
Q21124620
SYSTEM
transposition, DNA-mediated
Q21124620
(Q23501310,P682,c(Q1057))
action filter_type
action find
entity Q23501310
relation P682
type Q1057
[ANSWER] is phage integrase family site specific recombinase EF1648 involved in
['Q23501310', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?n WHERE { resource:Q23501310 property:P682 ?n . ?n rdf:type ontology:Q1057 }
transposition, DNA-mediated
Transposition, DNA-mediated is phage integrase family site specific recombinase EF1648 involved in
transposition, DNA-mediated
action filter_type
action find
entity phage integrase family site specific recombinase    EF1648
relation biological process
type metabolic process
['phage integrase family site specific recombinase    EF1648', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?n WHERE { resource:phage_integrase_family_site_specific_recombinase____EF1648 property:biological_process ?n . ?n rdf:type ontology:metabolic_process }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23501310
P688
Q863908
USER
Which nucleic acid sequence encodes phage integrase family site specific recombinase    EF1648 ?
(c(Q863908),P688,Q23501310)
action filter_type
action find_reverse
entity Q23501310
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q23501310']
SELECT DISTINCT ?t WHERE { ?t property:P688 resource:Q23501310 . ?t rdf:type ontology:Q863908 }
phage integrase family site specific recombinase    EF1648
action filter_type
action find_reverse
entity phage integrase family site specific recombinase    EF1648
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'phage integrase family site specific recombinase    EF1648']
SELECT DISTINCT ?t WHERE { ?t property:encodes resource:phage_integrase_family_site_specific_recombinase____EF1648 . ?t rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23175759
SYSTEM
phage integrase family site specific recombinase    EF1648
Q23175759
(c(Q863908),P688,Q23501310)
action filter_type
action find_reverse
entity Q23501310
relation P688
type Q863908
Phage integrase family site specific recombinase EF1648 encodes phage integrase family site specific recombinase EF1648
[{'concept': 'Q863908'}, 'P688', 'Q23501310']
SELECT DISTINCT ?t WHERE { ?t property:P688 resource:Q23501310 . ?t rdf:type ontology:Q863908 }
phage integrase family site specific recombinase    EF1648
Phage integrase family site specific recombinase EF1648 encodes phage integrase family site specific recombinase EF1648
phage integrase family site specific recombinase    EF1648
action filter_type
action find_reverse
entity phage integrase family site specific recombinase    EF1648
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'phage integrase family site specific recombinase    EF1648']
SELECT DISTINCT ?t WHERE { ?t property:encodes resource:phage_integrase_family_site_specific_recombinase____EF1648 . ?t rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q23501310
P702
Q863908
USER
What encodes phage integrase family site specific recombinase    EF1648 ?
(Q23501310,P702,c(Q863908))
action filter_type
action find
entity Q23501310
relation P702
type Q863908
['Q23501310', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?x WHERE { resource:Q23501310 property:P702 ?x . ?x rdf:type ontology:Q863908 }
phage integrase family site specific recombinase    EF1648
action filter_type
action find
entity phage integrase family site specific recombinase    EF1648
relation encoded by
type nucleic acid sequence
['phage integrase family site specific recombinase    EF1648', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?x WHERE { resource:phage_integrase_family_site_specific_recombinase____EF1648 property:encoded_by ?x . ?x rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q23175759
SYSTEM
phage integrase family site specific recombinase    EF1648
Q23175759
(Q23501310,P702,c(Q863908))
action filter_type
action find
entity Q23501310
relation P702
type Q863908
Phage integrase family site specific recombinase EF1648 encodes phage integrase family site specific recombinase EF1648
['Q23501310', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?x WHERE { resource:Q23501310 property:P702 ?x . ?x rdf:type ontology:Q863908 }
phage integrase family site specific recombinase    EF1648
Phage integrase family site specific recombinase EF1648 encodes phage integrase family site specific recombinase EF1648
phage integrase family site specific recombinase    EF1648
action filter_type
action find
entity phage integrase family site specific recombinase    EF1648
relation encoded by
type nucleic acid sequence
['phage integrase family site specific recombinase    EF1648', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?x WHERE { resource:phage_integrase_family_site_specific_recombinase____EF1648 property:encoded_by ?x . ?x rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q23175759 Q23501310
P702
Q181394
USER
Is phage integrase family site specific recombinase    EF1648 encoded by that nucleic acid sequence ?
(Q23501310,P702,Q23175759)
action is_in
entity Q23175759
action find
entity Q23501310
relation P702
['Q23501310', 'P702', 'Q23175759']
ASK WHERE { resource:Q23501310 property:P702 resource:Q23175759 }
phage integrase family site specific recombinase    EF1648 phage integrase family site specific recombinase    EF1648
action is_in
entity phage integrase family site specific recombinase    EF1648
action find
entity phage integrase family site specific recombinase    EF1648
relation encoded by
['phage integrase family site specific recombinase    EF1648', 'encoded by', 'phage integrase family site specific recombinase    EF1648']
ASK WHERE { resource:phage_integrase_family_site_specific_recombinase____EF1648 property:encoded_by resource:phage_integrase_family_site_specific_recombinase____EF1648 }
[]
nutrient
SYSTEM
YES
(Q23501310,P702,Q23175759)
action is_in
entity Q23175759
action find
entity Q23501310
relation P702
[ANSWER]
['Q23501310', 'P702', 'Q23175759']
ASK WHERE { resource:Q23501310 property:P702 resource:Q23175759 }
Yes
action is_in
entity phage integrase family site specific recombinase    EF1648
action find
entity phage integrase family site specific recombinase    EF1648
relation encoded by
['phage integrase family site specific recombinase    EF1648', 'encoded by', 'phage integrase family site specific recombinase    EF1648']
ASK WHERE { resource:phage_integrase_family_site_specific_recombinase____EF1648 property:encoded_by resource:phage_integrase_family_site_specific_recombinase____EF1648 }
[]
Logical Reasoning (All)
Logical|Union|Single_Relation
Q23141536 Q23501310
P703
Q631147
USER
Which infraspecific names are phage integrase family site specific recombinase    EF1648 or hypothetical protein    SDY_3131 found ?
OR((Q23501310,P703,c(Q631147)), (Q23141536,P703,c(Q631147)))
action filter_type
action union
action find
entity Q23501310
relation P703
action find
entity Q23141536
relation P703
type Q631147
{'OR': [['Q23501310', 'P703', {'concept': 'Q631147'}], ['Q23141536', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?b WHERE { { { resource:Q23501310 property:P703 ?b } UNION { resource:Q23141536 property:P703 ?b } } . ?b rdf:type ontology:Q631147 }
hypothetical protein    SDY_3131 phage integrase family site specific recombinase    EF1648
action filter_type
action union
action find
entity phage integrase family site specific recombinase    EF1648
relation found in taxon
action find
entity hypothetical protein    SDY_3131
relation found in taxon
type infraspecific name
{'OR': [['phage integrase family site specific recombinase    EF1648', 'found in taxon', {'concept': 'infraspecific name'}], ['hypothetical protein    SDY_3131', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?b WHERE { { { resource:phage_integrase_family_site_specific_recombinase____EF1648 property:found_in_taxon ?b } UNION { resource:hypothetical_protein____SDY_3131 property:found_in_taxon ?b } } . ?b rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q21102965 Q21102940
SYSTEM
Enterococcus faecalis V583, Shigella dysenteriae Sd197
Q21102965 Q21102940
OR((Q23501310,P703,c(Q631147)), (Q23141536,P703,c(Q631147)))
action filter_type
action union
action find
entity Q23501310
relation P703
action find
entity Q23141536
relation P703
type Q631147
[ANSWERS] are phage integrase family site specific recombinase EF1648 or hypothetical protein SDY_3131 found
{'OR': [['Q23501310', 'P703', {'concept': 'Q631147'}], ['Q23141536', 'P703', {'concept': 'Q631147'}]]}
SELECT DISTINCT ?b WHERE { { { resource:Q23501310 property:P703 ?b } UNION { resource:Q23141536 property:P703 ?b } } . ?b rdf:type ontology:Q631147 }
Enterococcus faecalis V583 Shigella dysenteriae Sd197
Enterococcus faecalis V583 and Shigella dysenteriae Sd197 are phage integrase family site specific recombinase EF1648 or hypothetical protein SDY_3131 found
Enterococcus faecalis V583 Shigella dysenteriae Sd197
action filter_type
action union
action find
entity phage integrase family site specific recombinase    EF1648
relation found in taxon
action find
entity hypothetical protein    SDY_3131
relation found in taxon
type infraspecific name
{'OR': [['phage integrase family site specific recombinase    EF1648', 'found in taxon', {'concept': 'infraspecific name'}], ['hypothetical protein    SDY_3131', 'found in taxon', {'concept': 'infraspecific name'}]]}
SELECT DISTINCT ?b WHERE { { { resource:phage_integrase_family_site_specific_recombinase____EF1648 property:found_in_taxon ?b } UNION { resource:hypothetical_protein____SDY_3131 property:found_in_taxon ?b } } . ?b rdf:type ontology:infraspecific_name }
[]