Simple Question (Direct)
Simple Question
Q27550894
P702
Q863908
USER
What encodes putative E3 ubiquitin-protein ligase HUL4 YJR036C ?
(Q27550894,P702,c(Q863908))
action filter_type
action find
entity Q27550894
relation P702
type Q863908
['Q27550894', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?y WHERE { resource:Q27550894 property:P702 ?y . ?y rdf:type ontology:Q863908 }
putative E3 ubiquitin-protein ligase HUL4 YJR036C
action filter_type
action find
entity putative E3 ubiquitin-protein ligase HUL4 YJR036C
relation encoded by
type nucleic acid sequence
['putative E3 ubiquitin-protein ligase HUL4 YJR036C', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?y WHERE { resource:putative_E3_ubiquitin-protein_ligase_HUL4_YJR036C property:encoded_by ?y . ?y rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q27543829
SYSTEM
putative E3 ubiquitin-protein ligase HUL4 YJR036C
Q27543829
(Q27550894,P702,c(Q863908))
action filter_type
action find
entity Q27550894
relation P702
type Q863908
[ANSWER] encodes [ANSWER]
['Q27550894', 'P702', {'concept': 'Q863908'}]
SELECT DISTINCT ?y WHERE { resource:Q27550894 property:P702 ?y . ?y rdf:type ontology:Q863908 }
putative E3 ubiquitin-protein ligase HUL4 YJR036C
Putative E3 ubiquitin-protein ligase HUL4 YJR036C encodes putative E3 ubiquitin-protein ligase HUL4 YJR036C
putative E3 ubiquitin-protein ligase HUL4 YJR036C
action filter_type
action find
entity putative E3 ubiquitin-protein ligase HUL4 YJR036C
relation encoded by
type nucleic acid sequence
['putative E3 ubiquitin-protein ligase HUL4 YJR036C', 'encoded by', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?y WHERE { resource:putative_E3_ubiquitin-protein_ligase_HUL4_YJR036C property:encoded_by ?y . ?y rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q27543829
P703
Q631147
USER
Which infraspecific name is that nucleic acid sequence found in ?
(Q27543829,P703,c(Q631147))
action filter_type
action find
entity Q27543829
relation P703
type Q631147
['Q27543829', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?i WHERE { resource:Q27543829 property:P703 ?i . ?i rdf:type ontology:Q631147 }
putative E3 ubiquitin-protein ligase HUL4 YJR036C
action filter_type
action find
entity putative E3 ubiquitin-protein ligase HUL4 YJR036C
relation found in taxon
type infraspecific name
['putative E3 ubiquitin-protein ligase HUL4 YJR036C', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?i WHERE { resource:putative_E3_ubiquitin-protein_ligase_HUL4_YJR036C property:found_in_taxon ?i . ?i rdf:type ontology:infraspecific_name }
[]
infraspecific name
Q27510868
SYSTEM
Saccharomyces cerevisiae S288c
Q27510868
(Q27543829,P703,c(Q631147))
action filter_type
action find
entity Q27543829
relation P703
type Q631147
That nucleic acid sequence is found in [ANSWER]
['Q27543829', 'P703', {'concept': 'Q631147'}]
SELECT DISTINCT ?i WHERE { resource:Q27543829 property:P703 ?i . ?i rdf:type ontology:Q631147 }
Saccharomyces cerevisiae S288c
That nucleic acid sequence is found in Saccharomyces cerevisiae S288c
Saccharomyces cerevisiae S288c
action filter_type
action find
entity putative E3 ubiquitin-protein ligase HUL4 YJR036C
relation found in taxon
type infraspecific name
['putative E3 ubiquitin-protein ligase HUL4 YJR036C', 'found in taxon', {'concept': 'infraspecific name'}]
SELECT DISTINCT ?i WHERE { resource:putative_E3_ubiquitin-protein_ligase_HUL4_YJR036C property:found_in_taxon ?i . ?i rdf:type ontology:infraspecific_name }
[]
Quantitative Reasoning (All)
Quantitative|Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q181394 Q8386 Q181394
USER
Which nutrients do exactly 17 drugs or nutrients contact with ?
(c(Q8386)|c(Q181394),P129,c(Q181394))
action equal
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
value 17
[[{'concept': 'Q8386'}, {'concept': 'Q181394'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?p WHERE { { SELECT DISTINCT ( COUNT ( ?r ) AS ?s ) ?p WHERE { VALUES ( ?o ) { ( ontology:Q8386 ) ( ontology:Q181394 ) } . ?r rdf:type ?o } GROUP BY ?p } . FILTER ( ?s = 17 ) }
action equal
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
value 17
[[{'concept': 'drug'}, {'concept': 'nutrient'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?p WHERE { { SELECT DISTINCT ( COUNT ( ?r ) AS ?s ) ?p WHERE { VALUES ( ?o ) { ( ontology:drug ) ( ontology:nutrient ) } . ?r rdf:type ?o } GROUP BY ?p } . FILTER ( ?s = 17 ) }
[]
nutrient drug nutrient
Q2663095 Q21115052
SYSTEM
Glucocorticoid receptor, 5-hydroxytryptamine receptor 1F
Q2663095 Q21115052
(c(Q8386)|c(Q181394),P129,c(Q181394))
action equal
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
value 17
Exactly 17 drugs or nutrients contact [ANSWERS]
[[{'concept': 'Q8386'}, {'concept': 'Q181394'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?p WHERE { { SELECT DISTINCT ( COUNT ( ?r ) AS ?s ) ?p WHERE { VALUES ( ?o ) { ( ontology:Q8386 ) ( ontology:Q181394 ) } . ?r rdf:type ?o } GROUP BY ?p } . FILTER ( ?s = 17 ) }
Glucocorticoid receptor 5-hydroxytryptamine receptor 1F
Exactly 17 drugs or nutrients contact Glucocorticoid receptor and 5-hydroxytryptamine receptor 1F
Glucocorticoid receptor 5-hydroxytryptamine receptor 1F
action equal
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
value 17
[[{'concept': 'drug'}, {'concept': 'nutrient'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?p WHERE { { SELECT DISTINCT ( COUNT ( ?r ) AS ?s ) ?p WHERE { VALUES ( ?o ) { ( ontology:drug ) ( ontology:nutrient ) } . ?r rdf:type ?o } GROUP BY ?p } . FILTER ( ?s = 17 ) }
[]
Clarification
Comparative|Count over More/Less|Mult. entity type|Indirect
P129
Q181394 Q79529 Q181394
USER
How many nutrients do greater number of chemical substances or nutrients interact with than that nutrient ?
(c(Q79529)|c(Q181394),P129,c(Q181394))
[[{'concept': 'Q79529'}, {'concept': 'Q181394'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?x ) WHERE { { { ?z property:P129 ?y } UNION { ?y property:P129 ?y } } . ?z rdf:type ontology:Q79529 . ?y rdf:type ontology:Q181394 }
[[{'concept': 'chemical substance'}, {'concept': 'nutrient'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?x ) WHERE { { { ?z property:physically_interacts_with ?y } UNION { ?y property:physically_interacts_with ?y } } . ?z rdf:type ontology:chemical_substance . ?y rdf:type ontology:nutrient }
[]
nutrient chemical substance nutrient
Comparative|Count over More/Less|Mult. entity type|Clarification
Q2663095
SYSTEM
Did you mean Glucocorticoid receptor ?
(c(Q79529)|c(Q181394),P129,c(Q181394))
[ANSWER]
[[{'concept': 'Q79529'}, {'concept': 'Q181394'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?x ) WHERE { { { ?z property:P129 ?y } UNION { ?y property:P129 ?y } } . ?z rdf:type ontology:Q79529 . ?y rdf:type ontology:Q181394 }
Did you mean Glucocorticoid receptor ?
Glucocorticoid receptor
[[{'concept': 'chemical substance'}, {'concept': 'nutrient'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?x ) WHERE { { { ?z property:physically_interacts_with ?y } UNION { ?y property:physically_interacts_with ?y } } . ?z rdf:type ontology:chemical_substance . ?y rdf:type ontology:nutrient }
[]
Comparative Reasoning (Count) (All)
USER
Yes
(c(Q79529)|c(Q181394),P129,c(Q181394))
[[{'concept': 'Q79529'}, {'concept': 'Q181394'}], 'P129', {'concept': 'Q181394'}]
[[{'concept': 'chemical substance'}, {'concept': 'nutrient'}], 'physically interacts with', {'concept': 'nutrient'}]
[]
SYSTEM
129
Q21115605 Q21110942 Q21116154 Q14872770 Q309513 Q21173427 Q308856 Q12746346 Q21108695 Q4847910 Q21123087 Q413209 Q21154358 Q5123372 Q21113310 Q21113313 Q21108624 Q288797 Q21172390 Q1486720 Q4789588 Q4789584 Q4789587 Q287958 Q5500227 Q1084878 Q21123083 Q14900999 Q7671479 Q21109365 Q15323278 Q21110867 Q21103155 Q21122995 Q4847900 Q4847907 Q7671495 Q4639596 Q416601 Q5512777 Q4734884 Q4734887 Q4734886 Q21988386 Q21173381 Q21497941 Q21126779 Q21126777 Q21116162 Q21116164 Q2844056 Q5773155 Q5500222 Q21115334 Q21118353 Q4822491 Q21173406 Q288382 Q4859538 Q21115051 Q21115052 Q909409 Q21109355 Q21115954 Q4734894 Q21110872 Q4734892 Q21114578 Q3454525 Q21108118 Q4734891 Q21114576 Q21118072 Q21131500 Q5500223 Q21132004 Q21991520 Q6590408 Q21132652 Q6594119 Q7671468 Q7673856 Q21118862 Q21115961 Q21115962 Q21115965 Q8083989 Q311568 Q5773160 Q6590443 Q21122997 Q3062781 Q12746120 Q11071075 Q5629167 Q21115815 Q21115816 Q21115819 Q288395 Q21108125 Q21115046 Q21115043 Q415271 Q7834290 Q21114585 Q21114582 Q21497939 Q21497937 Q21122433 Q21122435 Q424401 Q5009781 Q21119822 Q21173206 Q21130911 Q21150595 Q15324694 Q21201294 Q7671477 Q1949517 Q21110922 Q21113292 Q21109363 Q21109359 Q21983336 Q6589190 Q15324415 Q5520260 Q2034004
(c(Q79529)|c(Q181394),P129,c(Q181394))
[ANSWER]
[[{'concept': 'Q79529'}, {'concept': 'Q181394'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?x ) WHERE { { { ?z property:P129 ?y } UNION { ?y property:P129 ?y } } . ?z rdf:type ontology:Q79529 . ?y rdf:type ontology:Q181394 }
Vascular endothelial growth factor receptor 1 G-protein coupled receptor 55 Adenosine receptor A3 Histamine H4 receptor Histamine H1 receptor Histone deacetylase 9 D(4) dopamine receptor Nociceptin receptor G-protein coupled receptor 84 Muscarinic acetylcholine receptor M2 Neuromedin-K receptor Transient receptor potential cation channel subfamily V member 1 Histone deacetylase 3 Mu-type opioid receptor Gamma-aminobutyric acid receptor subunit rho-1 Gamma-aminobutyric acid receptor subunit rho-2 Platelet-derived growth factor receptor beta 5-hydroxytryptamine receptor 1B Vascular endothelial growth factor receptor 2 Glutamate receptor 3 Vasopressin V2 receptor Vasopressin V1a receptor Vasopressin V1b receptor Beta-1 adrenergic receptor Free fatty acid receptor 3 Peroxisome proliferator-activated receptor gamma Substance-K receptor Kappa-type opioid receptor Transient receptor potential cation channel subfamily M member 3 5-hydroxytryptamine receptor 4 Transient receptor potential cation channel subfamily A member 1 D(1A) dopamine receptor Glycine receptor subunit alpha-1 Melatonin receptor type 1A Muscarinic acetylcholine receptor M1 Muscarinic acetylcholine receptor M4 Transient receptor potential cation channel subfamily M member 8 5-hydroxytryptamine receptor 2B Androgen receptor Gamma-aminobutyric acid receptor subunit alpha-4 Alpha-1A adrenergic receptor Alpha-1D adrenergic receptor Alpha-1B adrenergic receptor Delta-type opioid receptor Histone deacetylase 6 5-hydroxytryptamine receptor 4 P2Y purinoceptor 4 P2Y purinoceptor 2 Adenosine receptor A2a Adenosine receptor A2b Muscarinic acetylcholine receptor M3 Histone deacetylase 2 Free fatty acid receptor 1 Delta-type opioid receptor Vascular endothelial growth factor receptor 3 Aurora kinase B Histone deacetylase 8 Histamine H4 receptor Metabotropic glutamate receptor 2 5-hydroxytryptamine receptor 1E 5-hydroxytryptamine receptor 1F Mast/stem cell growth factor receptor Kit 5-hydroxytryptamine receptor 7 Glycine receptor subunit alpha-2 Alpha-2B adrenergic receptor D(3) dopamine receptor Alpha-2A adrenergic receptor Gamma-aminobutyric acid receptor subunit alpha-3 Progesterone receptor 5-hydroxytryptamine receptor 2C Alpha-2C adrenergic receptor Gamma-aminobutyric acid receptor subunit alpha-5 Steroid hormone receptor ERR1 D(1B) dopamine receptor Free fatty acid receptor 2 Endothelin-1 receptor Trace amine-associated receptor 1 Metabotropic glutamate receptor 8 Glucose-dependent insulinotropic receptor Metabotropic glutamate receptor 3 Short transient receptor potential channel 5 Substance-P receptor Glutamate receptor ionotropic, NMDA 1 Glutamate receptor 1 Glutamate receptor 2 Glutamate receptor 4 Kappa-type opioid receptor Histamine H2 receptor Histone deacetylase 5 Oxytocin receptor Melatonin receptor type 1B Adenosine receptor A1 Muscarinic acetylcholine receptor M5 Trace amine-associated receptor 1 Histone deacetylase 1 Glutamate receptor ionotropic, NMDA 2A Glutamate receptor ionotropic, NMDA 2B Glutamate receptor ionotropic, NMDA 2C Histamine H3 receptor 5-hydroxytryptamine receptor 3A 5-hydroxytryptamine receptor 1D 5-hydroxytryptamine receptor 1A Receptor tyrosine-protein kinase erbB-2 Transient receptor potential cation channel subfamily A member 1 Gamma-aminobutyric acid receptor subunit alpha-6 Gamma-aminobutyric acid receptor subunit alpha-2 5-hydroxytryptamine receptor 7 5-hydroxytryptamine receptor 5A Orexin receptor type 1 Orexin receptor type 2 Epidermal growth factor receptor Receptor-type tyrosine-protein kinase FLT3 Inward rectifier potassium channel 4 Histone deacetylase 4 Glutamate receptor ionotropic, NMDA 2D Cannabinoid receptor 2 Transient receptor potential cation channel subfamily V member 3 Cannabinoid receptor 1 Transient receptor potential cation channel subfamily M member 2 5-hydroxytryptamine receptor 2A N-arachidonyl glycine receptor Gamma-aminobutyric acid receptor subunit rho-3 5-hydroxytryptamine receptor 6 5-hydroxytryptamine receptor 5A Histamine H3 receptor Metabotropic glutamate receptor 5 Transient receptor potential cation channel subfamily M member 8 Gamma-aminobutyric acid receptor subunit alpha-1 D(2) dopamine receptor
129
[[{'concept': 'chemical substance'}, {'concept': 'nutrient'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?y ) AS ?x ) WHERE { { { ?z property:physically_interacts_with ?y } UNION { ?y property:physically_interacts_with ?y } } . ?z rdf:type ontology:chemical_substance . ?y rdf:type ontology:nutrient }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q2663095
P680
Q44424
USER
Which the chemical bonds that represents the molecular function of Glucocorticoid receptor ?
(Q2663095,P680,c(Q44424))
action filter_type
action find
entity Q2663095
relation P680
type Q44424
['Q2663095', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?s WHERE { resource:Q2663095 property:P680 ?s . ?s rdf:type ontology:Q44424 }
Glucocorticoid receptor
action filter_type
action find
entity Glucocorticoid receptor
relation molecular function
type chemical bond
['Glucocorticoid receptor', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?s WHERE { resource:Glucocorticoid_receptor property:molecular_function ?s . ?s rdf:type ontology:chemical_bond }
[]
chemical bond
Q14633865 Q13667380
SYSTEM
zinc ion binding, metal ion binding
Q14633865 Q13667380
(Q2663095,P680,c(Q44424))
action filter_type
action find
entity Q2663095
relation P680
type Q44424
Represents The [ANSWERS]
['Q2663095', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?s WHERE { resource:Q2663095 property:P680 ?s . ?s rdf:type ontology:Q44424 }
zinc ion binding metal ion binding
Represents The zinc ion binding and metal ion binding
zinc ion binding metal ion binding
action filter_type
action find
entity Glucocorticoid receptor
relation molecular function
type chemical bond
['Glucocorticoid receptor', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?s WHERE { resource:Glucocorticoid_receptor property:molecular_function ?s . ?s rdf:type ontology:chemical_bond }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q2663095
P688
Q863908
USER
Which nucleic acid sequence encodes Glucocorticoid receptor ?
(c(Q863908),P688,Q2663095)
action filter_type
action find_reverse
entity Q2663095
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q2663095']
SELECT DISTINCT ?y WHERE { ?y property:P688 resource:Q2663095 . ?y rdf:type ontology:Q863908 }
Glucocorticoid receptor
action filter_type
action find_reverse
entity Glucocorticoid receptor
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Glucocorticoid receptor']
SELECT DISTINCT ?y WHERE { ?y property:encodes resource:Glucocorticoid_receptor . ?y rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q14877410
SYSTEM
NR3C1
Q14877410
(c(Q863908),P688,Q2663095)
action filter_type
action find_reverse
entity Q2663095
relation P688
type Q863908
[ANSWER] encodes Glucocorticoid receptor
[{'concept': 'Q863908'}, 'P688', 'Q2663095']
SELECT DISTINCT ?y WHERE { ?y property:P688 resource:Q2663095 . ?y rdf:type ontology:Q863908 }
NR3C1
NR3C1 encodes Glucocorticoid receptor
NR3C1
action filter_type
action find_reverse
entity Glucocorticoid receptor
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Glucocorticoid receptor']
SELECT DISTINCT ?y WHERE { ?y property:encodes resource:Glucocorticoid_receptor . ?y rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q2663095
P681
Q15989253
USER
Which are the parts that are a component of Glucocorticoid receptor ?
(Q2663095,P681,c(Q15989253))
action filter_type
action find
entity Q2663095
relation P681
type Q15989253
['Q2663095', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?v WHERE { resource:Q2663095 property:P681 ?v . ?v rdf:type ontology:Q15989253 }
Glucocorticoid receptor
action filter_type
action find
entity Glucocorticoid receptor
relation cell component
type part
['Glucocorticoid receptor', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?v WHERE { resource:Glucocorticoid_receptor property:cell_component ?v . ?v rdf:type ontology:part }
[]
part
Q79899 Q39572 Q40260
SYSTEM
cytoplasm, mitochondrion, nucleus
Q79899 Q39572 Q40260
(Q2663095,P681,c(Q15989253))
action filter_type
action find
entity Q2663095
relation P681
type Q15989253
The parts that are a component of Glucocorticoid receptor are the [ANSWERS]
['Q2663095', 'P681', {'concept': 'Q15989253'}]
SELECT DISTINCT ?v WHERE { resource:Q2663095 property:P681 ?v . ?v rdf:type ontology:Q15989253 }
cytoplasm mitochondrion nucleus
The parts that are a component of Glucocorticoid receptor are the cytoplasm, mitochondrion and nucleus
cytoplasm mitochondrion nucleus
action filter_type
action find
entity Glucocorticoid receptor
relation cell component
type part
['Glucocorticoid receptor', 'cell component', {'concept': 'part'}]
SELECT DISTINCT ?v WHERE { resource:Glucocorticoid_receptor property:cell_component ?v . ?v rdf:type ontology:part }
[]