Simple Question (Direct)
Simple Question
Q21496701
P680
Q44424
USER
What represents the molecular function of Geranylgeranyl transferase type-2 subunit alpha ?
(Q21496701,P680,c(Q44424))
action filter_type
action find
entity Q21496701
relation P680
type Q44424
['Q21496701', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?a WHERE { ?a rdf:type ontology:Q44424 . resource:Q21496701 property:P680 ?a }
Geranylgeranyl transferase type-2 subunit alpha
action filter_type
action find
entity Geranylgeranyl transferase type-2 subunit alpha
relation molecular function
type chemical bond
['Geranylgeranyl transferase type-2 subunit alpha', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?a WHERE { ?a rdf:type ontology:chemical_bond . resource:Geranylgeranyl_transferase_type-2_subunit_alpha property:molecular_function ?a }
[]
chemical bond
Q14633865
SYSTEM
zinc ion binding
Q14633865
(Q21496701,P680,c(Q44424))
action filter_type
action find
entity Q21496701
relation P680
type Q44424
The [ANSWER] represents the molecular function of Geranylgeranyl transferase type-2 subunit alpha
['Q21496701', 'P680', {'concept': 'Q44424'}]
SELECT DISTINCT ?a WHERE { ?a rdf:type ontology:Q44424 . resource:Q21496701 property:P680 ?a }
zinc ion binding
The zinc ion binding represents the molecular function of Geranylgeranyl transferase type-2 subunit alpha
zinc ion binding
action filter_type
action find
entity Geranylgeranyl transferase type-2 subunit alpha
relation molecular function
type chemical bond
['Geranylgeranyl transferase type-2 subunit alpha', 'molecular function', {'concept': 'chemical bond'}]
SELECT DISTINCT ?a WHERE { ?a rdf:type ontology:chemical_bond . resource:Geranylgeranyl_transferase_type-2_subunit_alpha property:molecular_function ?a }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q21496701
P688
Q863908
USER
Which nucleic acid sequence encodes that nutrient ?
(c(Q863908),P688,Q14633865)
action filter_type
action find_reverse
entity Q21496701
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q14633865']
SELECT DISTINCT ?n WHERE { ?n rdf:type ontology:Q863908 . ?n property:P688 resource:Q21496701 }
Geranylgeranyl transferase type-2 subunit alpha
action filter_type
action find_reverse
entity Geranylgeranyl transferase type-2 subunit alpha
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'zinc ion binding']
SELECT DISTINCT ?n WHERE { ?n rdf:type ontology:nucleic_acid_sequence . ?n property:encodes resource:Geranylgeranyl_transferase_type-2_subunit_alpha }
[]
nucleic acid sequence
Q18258304
SYSTEM
Rabggta
Q18258304
(c(Q863908),P688,Q14633865)
action filter_type
action find_reverse
entity Q21496701
relation P688
type Q863908
[ANSWER] encodes that nutrient
[{'concept': 'Q863908'}, 'P688', 'Q14633865']
SELECT DISTINCT ?n WHERE { ?n rdf:type ontology:Q863908 . ?n property:P688 resource:Q21496701 }
Rabggta
Rabggta encodes that nutrient
Rabggta
action filter_type
action find_reverse
entity Geranylgeranyl transferase type-2 subunit alpha
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'zinc ion binding']
SELECT DISTINCT ?n WHERE { ?n rdf:type ontology:nucleic_acid_sequence . ?n property:encodes resource:Geranylgeranyl_transferase_type-2_subunit_alpha }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18258304
P684
Q863908
USER
What is an otrhologus gene for that one ?
(Q18258304,P684,c(Q863908))
action filter_type
action find
entity Q18258304
relation P684
type Q863908
['Q18258304', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?l WHERE { resource:Q18258304 property:P684 ?l . ?l rdf:type ontology:Q863908 }
Rabggta
action filter_type
action find
entity Rabggta
relation ortholog
type nucleic acid sequence
['Rabggta', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?l WHERE { resource:Rabggta property:ortholog ?l . ?l rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18031001
SYSTEM
RABGGTA
Q18031001
(Q18258304,P684,c(Q863908))
action filter_type
action find
entity Q18258304
relation P684
type Q863908
An otrhologus gene for that one is the [ANSWER]
['Q18258304', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?l WHERE { resource:Q18258304 property:P684 ?l . ?l rdf:type ontology:Q863908 }
RABGGTA
An otrhologus gene for that one is the RABGGTA
RABGGTA
action filter_type
action find
entity Rabggta
relation ortholog
type nucleic acid sequence
['Rabggta', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?l WHERE { resource:Rabggta property:ortholog ?l . ?l rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Ellipsis)
only subject is changed, parent and predicate remains same
Q18266910
Q863908
USER
And what about Ptchd3?
(Q18266910,P684,c(Q863908))
action filter_type
action find
entity Q18266910
relation P684
type Q863908
['Q18266910', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?f WHERE { resource:Q18266910 property:P684 ?f . ?f rdf:type ontology:Q863908 }
Ptchd3
action filter_type
action find
entity Ptchd3
relation ortholog
type nucleic acid sequence
['Ptchd3', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?f WHERE { resource:Ptchd3 property:ortholog ?f . ?f rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q18056076
SYSTEM
PTCHD3
Q18056076
(Q18266910,P684,c(Q863908))
action filter_type
action find
entity Q18266910
relation P684
type Q863908
[ANSWER]
['Q18266910', 'P684', {'concept': 'Q863908'}]
SELECT DISTINCT ?f WHERE { resource:Q18266910 property:P684 ?f . ?f rdf:type ontology:Q863908 }
PTCHD3
PTCHD3
action filter_type
action find
entity Ptchd3
relation ortholog
type nucleic acid sequence
['Ptchd3', 'ortholog', {'concept': 'nucleic acid sequence'}]
SELECT DISTINCT ?f WHERE { resource:Ptchd3 property:ortholog ?f . ?f rdf:type ontology:nucleic_acid_sequence }
[]
Verification (Boolean) (All)
Verification|3 entities, all direct, 2 are query entities
Q18056076 Q21123343 Q23621378
P688
Q181394
USER
Does PTCHD3 encode Patched domain-containing protein 3 and bgaB    BL0259 ?
(Q18056076,P688,Q21123343) (Q18056076,P688,Q23621378)
action is_in
entity Q18056076
action intersection
action find_reverse
entity Q21123343
relation P688
action find_reverse
entity Q23621378
relation P688
['Q18056076', 'P688', 'Q21123343'] ['Q18056076', 'P688', 'Q23621378']
ASK WHERE { resource:Q18056076 property:P688 resource:Q21123343 . resource:Q18056076 property:P688 resource:Q23621378 }
PTCHD3 Patched domain-containing protein 3 bgaB    BL0259
action is_in
entity PTCHD3
action intersection
action find_reverse
entity Patched domain-containing protein 3
relation encodes
action find_reverse
entity bgaB    BL0259
relation encodes
['PTCHD3', 'encodes', 'Patched domain-containing protein 3'] ['PTCHD3', 'encodes', 'bgaB    BL0259']
ASK WHERE { resource:PTCHD3 property:encodes resource:Patched_domain-containing_protein_3 . resource:PTCHD3 property:encodes resource:bgaB____BL0259 }
[]
nutrient
SYSTEM
YES and NO respectively
(Q18056076,P688,Q21123343) (Q18056076,P688,Q23621378)
action is_in
entity Q18056076
action intersection
action find_reverse
entity Q21123343
relation P688
action find_reverse
entity Q23621378
relation P688
[ANSWER]
['Q18056076', 'P688', 'Q21123343'] ['Q18056076', 'P688', 'Q23621378']
ASK WHERE { resource:Q18056076 property:P688 resource:Q21123343 . resource:Q18056076 property:P688 resource:Q23621378 }
YES and NO respectively
action is_in
entity PTCHD3
action intersection
action find_reverse
entity Patched domain-containing protein 3
relation encodes
action find_reverse
entity bgaB    BL0259
relation encodes
['PTCHD3', 'encodes', 'Patched domain-containing protein 3'] ['PTCHD3', 'encodes', 'bgaB    BL0259']
ASK WHERE { resource:PTCHD3 property:encodes resource:Patched_domain-containing_protein_3 . resource:PTCHD3 property:encodes resource:bgaB____BL0259 }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18056076
P702
Q181394
USER
Which nutrient does that nucleic acid sequence encode ?
action filter_type
action find_reverse
entity Q18056076
relation P702
type Q181394
SELECT DISTINCT ?g WHERE { ?g property:P702 resource:Q18056076 . ?g rdf:type ontology:Q181394 }
PTCHD3
action filter_type
action find_reverse
entity PTCHD3
relation encoded by
type nutrient
SELECT DISTINCT ?g WHERE { ?g property:encoded_by resource:PTCHD3 . ?g rdf:type ontology:nutrient }
[]
nutrient
Q21123343
SYSTEM
Patched domain-containing protein 3
Q21123343
action filter_type
action find_reverse
entity Q18056076
relation P702
type Q181394
That nucleic acid sequence encodes the [ANSWER]
SELECT DISTINCT ?g WHERE { ?g property:P702 resource:Q18056076 . ?g rdf:type ontology:Q181394 }
Patched domain-containing protein 3
That nucleic acid sequence encodes the Patched domain-containing protein 3
Patched domain-containing protein 3
action filter_type
action find_reverse
entity PTCHD3
relation encoded by
type nutrient
SELECT DISTINCT ?g WHERE { ?g property:encoded_by resource:PTCHD3 . ?g rdf:type ontology:nutrient }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q18056076
P703
Q16521
USER
Where is that nucleic acid sequence found ?
(Q21123343,P703,c(Q16521))
action filter_type
action find
entity Q18056076
relation P703
type Q16521
['Q21123343', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?b WHERE { resource:Q18056076 property:P703 ?b . ?b rdf:type ontology:Q16521 }
PTCHD3
action filter_type
action find
entity PTCHD3
relation found in taxon
type taxon
['Patched domain-containing protein 3', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?b WHERE { resource:PTCHD3 property:found_in_taxon ?b . ?b rdf:type ontology:taxon }
[]
taxon
Q15978631
SYSTEM
Homo sapiens
Q15978631
(Q21123343,P703,c(Q16521))
action filter_type
action find
entity Q18056076
relation P703
type Q16521
That nucleic acid sequence is found in [ANSWER]
['Q21123343', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?b WHERE { resource:Q18056076 property:P703 ?b . ?b rdf:type ontology:Q16521 }
Homo sapiens
That nucleic acid sequence is found in Homo sapiens
Homo sapiens
action filter_type
action find
entity PTCHD3
relation found in taxon
type taxon
['Patched domain-containing protein 3', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?b WHERE { resource:PTCHD3 property:found_in_taxon ?b . ?b rdf:type ontology:taxon }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, object is indirect
Q15978631 Q21986979
P703
Q181394
USER
Is TM2 domain-containing protein 3 a part of the taxon that one ?
(Q21986979,P703,Q15978631)
action is_in
entity Q21986979
action find
entity Q15978631
relation P703
['Q21986979', 'P703', 'Q15978631']
ASK WHERE { resource:Q15978631 property:P703 resource:Q21986979 }
Homo sapiens TM2 domain-containing protein 3
action is_in
entity TM2 domain-containing protein 3
action find
entity Homo sapiens
relation found in taxon
['TM2 domain-containing protein 3', 'found in taxon', 'Homo sapiens']
ASK WHERE { resource:Homo_sapiens property:found_in_taxon resource:TM2_domain-containing_protein_3 }
[]
nutrient
SYSTEM
NO
(Q21986979,P703,Q15978631)
action is_in
entity Q21986979
action find
entity Q15978631
relation P703
[ANSWER]
['Q21986979', 'P703', 'Q15978631']
ASK WHERE { resource:Q15978631 property:P703 resource:Q21986979 }
No
action is_in
entity TM2 domain-containing protein 3
action find
entity Homo sapiens
relation found in taxon
['TM2 domain-containing protein 3', 'found in taxon', 'Homo sapiens']
ASK WHERE { resource:Homo_sapiens property:found_in_taxon resource:TM2_domain-containing_protein_3 }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, subject is indirect
Q18031001 Q21126818
P688
Q181394
USER
Does that nucleic acid sequence encode Geranylgeranyl transferase type-2 subunit alpha ?
(Q18031001,P688,Q21126818)
action is_in
entity Q21126818
action find
entity Q18031001
relation P688
['Q18031001', 'P688', 'Q21126818']
ASK WHERE { resource:Q18031001 property:P688 resource:Q21126818 }
RABGGTA Geranylgeranyl transferase type-2 subunit alpha
action is_in
entity Geranylgeranyl transferase type-2 subunit alpha
action find
entity RABGGTA
relation encodes
['RABGGTA', 'encodes', 'Geranylgeranyl transferase type-2 subunit alpha']
ASK WHERE { resource:RABGGTA property:encodes resource:Geranylgeranyl_transferase_type-2_subunit_alpha }
[]
nutrient
SYSTEM
YES
(Q18031001,P688,Q21126818)
action is_in
entity Q21126818
action find
entity Q18031001
relation P688
[ANSWER]
['Q18031001', 'P688', 'Q21126818']
ASK WHERE { resource:Q18031001 property:P688 resource:Q21126818 }
Yes
action is_in
entity Geranylgeranyl transferase type-2 subunit alpha
action find
entity RABGGTA
relation encodes
['RABGGTA', 'encodes', 'Geranylgeranyl transferase type-2 subunit alpha']
ASK WHERE { resource:RABGGTA property:encodes resource:Geranylgeranyl_transferase_type-2_subunit_alpha }
[]
Verification (Boolean) (All)
Verification|3 entities, all direct, 2 are query entities
Q18258304 Q21496701 Q23433604
P688
Q181394
USER
Does Rabggta encode Geranylgeranyl transferase type-2 subunit alpha and hypothetical protein    VC1517 ?
(Q18258304,P688,Q21496701) (Q18258304,P688,Q23433604)
action is_in
entity Q18258304
action intersection
action find_reverse
entity Q21496701
relation P688
action find_reverse
entity Q23433604
relation P688
['Q18258304', 'P688', 'Q21496701'] ['Q18258304', 'P688', 'Q23433604']
ASK WHERE { resource:Q18258304 property:P688 resource:Q21496701 . resource:Q18258304 property:P688 resource:Q23433604 }
Rabggta Geranylgeranyl transferase type-2 subunit alpha hypothetical protein    VC1517
action is_in
entity Rabggta
action intersection
action find_reverse
entity Geranylgeranyl transferase type-2 subunit alpha
relation encodes
action find_reverse
entity hypothetical protein    VC1517
relation encodes
['Rabggta', 'encodes', 'Geranylgeranyl transferase type-2 subunit alpha'] ['Rabggta', 'encodes', 'hypothetical protein    VC1517']
ASK WHERE { resource:Rabggta property:encodes resource:Geranylgeranyl_transferase_type-2_subunit_alpha . resource:Rabggta property:encodes resource:hypothetical_protein____VC1517 }
[]
nutrient
SYSTEM
YES and NO respectively
(Q18258304,P688,Q21496701) (Q18258304,P688,Q23433604)
action is_in
entity Q18258304
action intersection
action find_reverse
entity Q21496701
relation P688
action find_reverse
entity Q23433604
relation P688
[ANSWER]
['Q18258304', 'P688', 'Q21496701'] ['Q18258304', 'P688', 'Q23433604']
ASK WHERE { resource:Q18258304 property:P688 resource:Q21496701 . resource:Q18258304 property:P688 resource:Q23433604 }
YES and NO respectively
action is_in
entity Rabggta
action intersection
action find_reverse
entity Geranylgeranyl transferase type-2 subunit alpha
relation encodes
action find_reverse
entity hypothetical protein    VC1517
relation encodes
['Rabggta', 'encodes', 'Geranylgeranyl transferase type-2 subunit alpha'] ['Rabggta', 'encodes', 'hypothetical protein    VC1517']
ASK WHERE { resource:Rabggta property:encodes resource:Geranylgeranyl_transferase_type-2_subunit_alpha . resource:Rabggta property:encodes resource:hypothetical_protein____VC1517 }
[]
Comparative Reasoning (All)
Comparative|More/Less|Mult. entity type
Q12106
P180
Q16521 Q3516658 Q386724
USER
Which taxons are expressed in more number of heraldic symbols or works than Triticum ?
(c(Q3516658)|c(Q386724),P180,c(Q16521))
action greater
action union
action find_reverse_tuple_counts
relation P180
type Q16521
type Q3516658
action find_reverse_tuple_counts
relation P180
type Q16521
type Q386724
action count
action filter_multi_types
action find_reverse
entity Q12106
relation P180
type Q3516658
type Q386724
[[{'concept': 'Q3516658'}, {'concept': 'Q386724'}], 'P180', {'concept': 'Q16521'}]
SELECT DISTINCT ?m WHERE { FILTER ( ?d > ?u ) . { SELECT DISTINCT ( COUNT ( ?x ) AS ?u ) WHERE { ?x property:P180 resource:Q12106 . { { ?x rdf:type ontology:Q3516658 } UNION { ?x rdf:type ontology:Q386724 } } } } . { SELECT DISTINCT ( COUNT ( ?k ) AS ?d ) ?m WHERE { { ?m rdf:type ontology:Q16521 . ?k rdf:type ontology:Q3516658 . ?k property:P180 ?m } UNION { ?m rdf:type ontology:Q16521 . ?k rdf:type ontology:Q386724 . ?k property:P180 ?m } } GROUP BY ?m } }
Triticum
action greater
action union
action find_reverse_tuple_counts
relation depicts
type taxon
type heraldic symbol
action find_reverse_tuple_counts
relation depicts
type taxon
type work
action count
action filter_multi_types
action find_reverse
entity Triticum
relation depicts
type heraldic symbol
type work
[[{'concept': 'heraldic symbol'}, {'concept': 'work'}], 'depicts', {'concept': 'taxon'}]
SELECT DISTINCT ?m WHERE { FILTER ( ?d > ?u ) . { SELECT DISTINCT ( COUNT ( ?x ) AS ?u ) WHERE { ?x property:depicts resource:Triticum . { { ?x rdf:type ontology:heraldic_symbol } UNION { ?x rdf:type ontology:work } } } } . { SELECT DISTINCT ( COUNT ( ?k ) AS ?d ) ?m WHERE { { ?m rdf:type ontology:taxon . ?k rdf:type ontology:heraldic_symbol . ?k property:depicts ?m } UNION { ?m rdf:type ontology:taxon . ?k rdf:type ontology:work . ?k property:depicts ?m } } GROUP BY ?m } }
[]
taxon heraldic symbol work
Q2102 Q104212 Q140
SYSTEM
snake, common hop, lion
Q3916957 Q44789 Q2102 Q39918 Q13189 Q157952 Q104212 Q25239 Q2934 Q44120 Q140 Q147641 Q156901 Q34706
(c(Q3516658)|c(Q386724),P180,c(Q16521))
action greater
action union
action find_reverse_tuple_counts
relation P180
type Q16521
type Q3516658
action find_reverse_tuple_counts
relation P180
type Q16521
type Q386724
action count
action filter_multi_types
action find_reverse
entity Q12106
relation P180
type Q3516658
type Q386724
[ANSWERS] are expressed in more number of heraldic symbols or works than Triticum
[[{'concept': 'Q3516658'}, {'concept': 'Q386724'}], 'P180', {'concept': 'Q16521'}]
SELECT DISTINCT ?m WHERE { FILTER ( ?d > ?u ) . { SELECT DISTINCT ( COUNT ( ?x ) AS ?u ) WHERE { ?x property:P180 resource:Q12106 . { { ?x rdf:type ontology:Q3516658 } UNION { ?x rdf:type ontology:Q386724 } } } } . { SELECT DISTINCT ( COUNT ( ?k ) AS ?d ) ?m WHERE { { ?m rdf:type ontology:Q16521 . ?k rdf:type ontology:Q3516658 . ?k property:P180 ?m } UNION { ?m rdf:type ontology:Q16521 . ?k rdf:type ontology:Q386724 . ?k property:P180 ?m } } GROUP BY ?m } }
turnip Morus snake Prunus dulcis Prunus persica Dracaena draco common hop alder goat Prunus domestica lion Aquilegia Iris leopard
Snake, common hop and lion are expressed in more number of heraldic symbols or works than Triticum
snake common hop lion
action greater
action union
action find_reverse_tuple_counts
relation depicts
type taxon
type heraldic symbol
action find_reverse_tuple_counts
relation depicts
type taxon
type work
action count
action filter_multi_types
action find_reverse
entity Triticum
relation depicts
type heraldic symbol
type work
[[{'concept': 'heraldic symbol'}, {'concept': 'work'}], 'depicts', {'concept': 'taxon'}]
SELECT DISTINCT ?m WHERE { FILTER ( ?d > ?u ) . { SELECT DISTINCT ( COUNT ( ?x ) AS ?u ) WHERE { ?x property:depicts resource:Triticum . { { ?x rdf:type ontology:heraldic_symbol } UNION { ?x rdf:type ontology:work } } } } . { SELECT DISTINCT ( COUNT ( ?k ) AS ?d ) ?m WHERE { { ?m rdf:type ontology:taxon . ?k rdf:type ontology:heraldic_symbol . ?k property:depicts ?m } UNION { ?m rdf:type ontology:taxon . ?k rdf:type ontology:work . ?k property:depicts ?m } } GROUP BY ?m } }
[]