Simple Question (Direct)
Simple Question
Q21991530
P680
Q2996394
USER
What represents the molecular function of Transmembrane protein 18 ?
(Q21991530,P680,c(Q2996394))
action filter_type
action find
entity Q21991530
relation P680
type Q2996394
['Q21991530', 'P680', {'concept': 'Q2996394'}]
SELECT DISTINCT ?p WHERE { ?p rdf:type ontology:Q2996394 . resource:Q21991530 property:P680 ?p }
Transmembrane protein 18
action filter_type
action find
entity Transmembrane protein 18
relation molecular function
type biological process
['Transmembrane protein 18', 'molecular function', {'concept': 'biological process'}]
SELECT DISTINCT ?p WHERE { ?p rdf:type ontology:biological_process . resource:Transmembrane_protein_18 property:molecular_function ?p }
[]
biological process
Q14860489
SYSTEM
molecular function
Q14860489
(Q21991530,P680,c(Q2996394))
action filter_type
action find
entity Q21991530
relation P680
type Q2996394
The [ANSWER] represents the [ANSWER] of Transmembrane protein 18
['Q21991530', 'P680', {'concept': 'Q2996394'}]
SELECT DISTINCT ?p WHERE { ?p rdf:type ontology:Q2996394 . resource:Q21991530 property:P680 ?p }
molecular function
The molecular function represents the molecular function of Transmembrane protein 18
molecular function
action filter_type
action find
entity Transmembrane protein 18
relation molecular function
type biological process
['Transmembrane protein 18', 'molecular function', {'concept': 'biological process'}]
SELECT DISTINCT ?p WHERE { ?p rdf:type ontology:biological_process . resource:Transmembrane_protein_18 property:molecular_function ?p }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q21991530
P688
Q863908
USER
Which nucleic acid sequence encodes Transmembrane protein 18 ?
(c(Q863908),P688,Q21991530)
action filter_type
action find_reverse
entity Q21991530
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q21991530']
SELECT DISTINCT ?r WHERE { ?r rdf:type ontology:Q863908 . ?r property:P688 resource:Q21991530 }
Transmembrane protein 18
action filter_type
action find_reverse
entity Transmembrane protein 18
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Transmembrane protein 18']
SELECT DISTINCT ?r WHERE { ?r rdf:type ontology:nucleic_acid_sequence . ?r property:encodes resource:Transmembrane_protein_18 }
[]
nucleic acid sequence
Q18296331
SYSTEM
Tmem18
Q18296331
(c(Q863908),P688,Q21991530)
action filter_type
action find_reverse
entity Q21991530
relation P688
type Q863908
[ANSWER] encodes Transmembrane protein 18
[{'concept': 'Q863908'}, 'P688', 'Q21991530']
SELECT DISTINCT ?r WHERE { ?r rdf:type ontology:Q863908 . ?r property:P688 resource:Q21991530 }
Tmem18
Tmem18 encodes Transmembrane protein 18
Tmem18
action filter_type
action find_reverse
entity Transmembrane protein 18
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Transmembrane protein 18']
SELECT DISTINCT ?r WHERE { ?r rdf:type ontology:nucleic_acid_sequence . ?r property:encodes resource:Transmembrane_protein_18 }
[]
Logical Reasoning (All)
Logical|Intersection|Single_Relation
Q14888097 Q14860489
P680
Q181394
USER
Which nutrients are the gene that have molecular function and core promoter proximal region sequence-specific DNA binding as the molecular function ?
AND((c(Q181394),P680,Q14860489), (c(Q181394),P680,Q14888097))
action filter_type
action intersection
action find_reverse
entity Q14860489
relation P680
action find_reverse
entity Q14888097
relation P680
type Q181394
{'AND': [[{'concept': 'Q181394'}, 'P680', 'Q14860489'], [{'concept': 'Q181394'}, 'P680', 'Q14888097']]}
SELECT DISTINCT ?g WHERE { ?g property:P680 resource:Q14860489 . ?g property:P680 resource:Q14888097 . ?g rdf:type ontology:Q181394 }
core promoter proximal region sequence-specific DNA binding molecular function
action filter_type
action intersection
action find_reverse
entity molecular function
relation molecular function
action find_reverse
entity core promoter proximal region sequence-specific DNA binding
relation molecular function
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'molecular function', 'molecular function'], [{'concept': 'nutrient'}, 'molecular function', 'core promoter proximal region sequence-specific DNA binding']]}
SELECT DISTINCT ?g WHERE { ?g property:molecular_function resource:molecular_function . ?g property:molecular_function resource:core_promoter_proximal_region_sequence-specific_DNA_binding . ?g rdf:type ontology:nutrient }
[]
nutrient
Q21117516
SYSTEM
Doublesex- and mab-3-related transcription factor 2
Q21117516
AND((c(Q181394),P680,Q14860489), (c(Q181394),P680,Q14888097))
action filter_type
action intersection
action find_reverse
entity Q14860489
relation P680
action find_reverse
entity Q14888097
relation P680
type Q181394
[ANSWER] is the gene that have molecular function and core promoter proximal region sequence-specific DNA binding as the molecular function
{'AND': [[{'concept': 'Q181394'}, 'P680', 'Q14860489'], [{'concept': 'Q181394'}, 'P680', 'Q14888097']]}
SELECT DISTINCT ?g WHERE { ?g property:P680 resource:Q14860489 . ?g property:P680 resource:Q14888097 . ?g rdf:type ontology:Q181394 }
Doublesex- and mab-3-related transcription factor 2
Doublesex- and mab-3-related transcription factor 2 is the gene that have molecular function and core promoter proximal region sequence-specific DNA binding as the molecular function
Doublesex- and mab-3-related transcription factor 2
action filter_type
action intersection
action find_reverse
entity molecular function
relation molecular function
action find_reverse
entity core promoter proximal region sequence-specific DNA binding
relation molecular function
type nutrient
{'AND': [[{'concept': 'nutrient'}, 'molecular function', 'molecular function'], [{'concept': 'nutrient'}, 'molecular function', 'core promoter proximal region sequence-specific DNA binding']]}
SELECT DISTINCT ?g WHERE { ?g property:molecular_function resource:molecular_function . ?g property:molecular_function resource:core_promoter_proximal_region_sequence-specific_DNA_binding . ?g rdf:type ontology:nutrient }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, subject is indirect
Q21117516 Q22239148
P702
Q863908
USER
Does glycogen phosphorylase    LBA0685 gene encodes that nutrient ?
(Q21117516,P702,Q22239148)
action is_in
entity Q22239148
action find
entity Q21117516
relation P702
['Q21117516', 'P702', 'Q22239148']
ASK WHERE { resource:Q21117516 property:P702 resource:Q22239148 }
Doublesex- and mab-3-related transcription factor 2 glycogen phosphorylase    LBA0685
action is_in
entity glycogen phosphorylase    LBA0685
action find
entity Doublesex- and mab-3-related transcription factor 2
relation encoded by
['Doublesex- and mab-3-related transcription factor 2', 'encoded by', 'glycogen phosphorylase    LBA0685']
ASK WHERE { resource:Doublesex-_and_mab-3-related_transcription_factor_2 property:encoded_by resource:glycogen_phosphorylase____LBA0685 }
[]
nucleic acid sequence
SYSTEM
NO
(Q21117516,P702,Q22239148)
action is_in
entity Q22239148
action find
entity Q21117516
relation P702
[ANSWER]
['Q21117516', 'P702', 'Q22239148']
ASK WHERE { resource:Q21117516 property:P702 resource:Q22239148 }
No
action is_in
entity glycogen phosphorylase    LBA0685
action find
entity Doublesex- and mab-3-related transcription factor 2
relation encoded by
['Doublesex- and mab-3-related transcription factor 2', 'encoded by', 'glycogen phosphorylase    LBA0685']
ASK WHERE { resource:Doublesex-_and_mab-3-related_transcription_factor_2 property:encoded_by resource:glycogen_phosphorylase____LBA0685 }
[]
Verification (Boolean) (All)
Verification|2 entities, both direct
Q18296331 Q21991530
P688
Q181394
USER
Is Tmem18 an encoding of Transmembrane protein 18 ?
(Q18296331,P688,Q21991530)
action is_in
entity Q21991530
action find
entity Q18296331
relation P688
['Q18296331', 'P688', 'Q21991530']
ASK WHERE { resource:Q18296331 property:P688 resource:Q21991530 }
Tmem18 Transmembrane protein 18
action is_in
entity Transmembrane protein 18
action find
entity Tmem18
relation encodes
['Tmem18', 'encodes', 'Transmembrane protein 18']
ASK WHERE { resource:Tmem18 property:encodes resource:Transmembrane_protein_18 }
[]
nutrient
SYSTEM
YES
(Q18296331,P688,Q21991530)
action is_in
entity Q21991530
action find
entity Q18296331
relation P688
[ANSWER]
['Q18296331', 'P688', 'Q21991530']
ASK WHERE { resource:Q18296331 property:P688 resource:Q21991530 }
Yes
action is_in
entity Transmembrane protein 18
action find
entity Tmem18
relation encodes
['Tmem18', 'encodes', 'Transmembrane protein 18']
ASK WHERE { resource:Tmem18 property:encodes resource:Transmembrane_protein_18 }
[]
Quantitative Reasoning (All)
Quantitative|Atleast/ Atmost/ Approx. the same/Equal|Mult. entity type
P129
Q181394 Q181394 Q8386
USER
Which nutrients do around 36 nutrients and drugs collaborate with ?
(c(Q181394)|c(Q8386),P129,c(Q181394))
action approx
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
value 36
[[{'concept': 'Q181394'}, {'concept': 'Q8386'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?g WHERE { { SELECT DISTINCT ?g ( COUNT ( ?v ) AS ?j ) WHERE { { ?g rdf:type ontology:Q181394 . ?v rdf:type ontology:Q8386 . ?v property:P129 ?g } UNION { ?v property:P129 ?g . ?g rdf:type ontology:Q181394 . ?v rdf:type ontology:Q181394 } } GROUP BY ?g } . FILTER ( ?j = 36 ) }
action approx
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
value 36
[[{'concept': 'nutrient'}, {'concept': 'drug'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?g WHERE { { SELECT DISTINCT ?g ( COUNT ( ?v ) AS ?j ) WHERE { { ?g rdf:type ontology:nutrient . ?v rdf:type ontology:drug . ?v property:physically_interacts_with ?g } UNION { ?v property:physically_interacts_with ?g . ?g rdf:type ontology:nutrient . ?v rdf:type ontology:nutrient } } GROUP BY ?g } . FILTER ( ?j = 36 ) }
[]
nutrient nutrient drug
Q21108118 Q21115043 Q2034004
SYSTEM
5-hydroxytryptamine receptor 2C, 5-hydroxytryptamine receptor 1A, D(2) dopamine receptor
Q21108118 Q21115043 Q2034004
(c(Q181394)|c(Q8386),P129,c(Q181394))
action approx
action union
action find_reverse_tuple_counts
relation P129
type Q181394
type Q181394
action find_reverse_tuple_counts
relation P129
type Q181394
type Q8386
value 36
Around 36 nutrients and drugs collaborate with [ANSWERS]
[[{'concept': 'Q181394'}, {'concept': 'Q8386'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?g WHERE { { SELECT DISTINCT ?g ( COUNT ( ?v ) AS ?j ) WHERE { { ?g rdf:type ontology:Q181394 . ?v rdf:type ontology:Q8386 . ?v property:P129 ?g } UNION { ?v property:P129 ?g . ?g rdf:type ontology:Q181394 . ?v rdf:type ontology:Q181394 } } GROUP BY ?g } . FILTER ( ?j = 36 ) }
5-hydroxytryptamine receptor 2C 5-hydroxytryptamine receptor 1A D(2) dopamine receptor
Around 36 nutrients and drugs collaborate with 5-hydroxytryptamine receptor 2C, 5-hydroxytryptamine receptor 1A and D(2) dopamine receptor
5-hydroxytryptamine receptor 2C 5-hydroxytryptamine receptor 1A D(2) dopamine receptor
action approx
action union
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type nutrient
action find_reverse_tuple_counts
relation physically interacts with
type nutrient
type drug
value 36
[[{'concept': 'nutrient'}, {'concept': 'drug'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?g WHERE { { SELECT DISTINCT ?g ( COUNT ( ?v ) AS ?j ) WHERE { { ?g rdf:type ontology:nutrient . ?v rdf:type ontology:drug . ?v property:physically_interacts_with ?g } UNION { ?v property:physically_interacts_with ?g . ?g rdf:type ontology:nutrient . ?v rdf:type ontology:nutrient } } GROUP BY ?g } . FILTER ( ?j = 36 ) }
[]
Clarification
Comparative|More/Less|Mult. entity type|Indirect
P129
Q181394 Q8386 Q181394
USER
Which nutrients do more number of drugs or nutrients communicate with than that nutrient ?
(c(Q8386)|c(Q181394),P129,c(Q181394))
[[{'concept': 'Q8386'}, {'concept': 'Q181394'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?y WHERE { { ?m property:P129 ?y . VALUES ( ?m ) { ( ?z ) ( ?y ) } } . ?z rdf:type ontology:Q8386 . ?y rdf:type ontology:Q181394 }
[[{'concept': 'drug'}, {'concept': 'nutrient'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?y WHERE { { ?m property:physically_interacts_with ?y . VALUES ( ?m ) { ( ?z ) ( ?y ) } } . ?z rdf:type ontology:drug . ?y rdf:type ontology:nutrient }
[]
nutrient drug nutrient
Comparative|More/Less|Mult. entity type|Clarification
Q21108118
SYSTEM
Did you mean 5-hydroxytryptamine receptor 2C ?
(c(Q8386)|c(Q181394),P129,c(Q181394))
[ANSWER]
[[{'concept': 'Q8386'}, {'concept': 'Q181394'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?y WHERE { { ?m property:P129 ?y . VALUES ( ?m ) { ( ?z ) ( ?y ) } } . ?z rdf:type ontology:Q8386 . ?y rdf:type ontology:Q181394 }
Did you mean 5-hydroxytryptamine receptor 2C ?
5-hydroxytryptamine receptor 2C
[[{'concept': 'drug'}, {'concept': 'nutrient'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?y WHERE { { ?m property:physically_interacts_with ?y . VALUES ( ?m ) { ( ?z ) ( ?y ) } } . ?z rdf:type ontology:drug . ?y rdf:type ontology:nutrient }
[]
Comparative Reasoning (All)
USER
Yes
(c(Q8386)|c(Q181394),P129,c(Q181394))
[[{'concept': 'Q8386'}, {'concept': 'Q181394'}], 'P129', {'concept': 'Q181394'}]
[[{'concept': 'drug'}, {'concept': 'nutrient'}], 'physically interacts with', {'concept': 'nutrient'}]
[]
Q2034004 Q1949517 Q21115043
SYSTEM
D(2) dopamine receptor, 5-hydroxytryptamine receptor 2A, 5-hydroxytryptamine receptor 1A
Q309513 Q21115043 Q1949517 Q2034004
(c(Q8386)|c(Q181394),P129,c(Q181394))
[ANSWERS] more number of drugs or nutrients communicate with than that nutrient
[[{'concept': 'Q8386'}, {'concept': 'Q181394'}], 'P129', {'concept': 'Q181394'}]
SELECT DISTINCT ?y WHERE { { { ?z property:P129 ?y } UNION { ?y property:P129 ?y } } . ?z rdf:type ontology:Q8386 . ?y rdf:type ontology:Q181394 }
Histamine H1 receptor 5-hydroxytryptamine receptor 1A 5-hydroxytryptamine receptor 2A D(2) dopamine receptor
D(2) dopamine receptor, 5-hydroxytryptamine receptor 2A and 5-hydroxytryptamine receptor 1A more number of drugs or nutrients communicate with than that nutrient
D(2) dopamine receptor 5-hydroxytryptamine receptor 2A 5-hydroxytryptamine receptor 1A
[[{'concept': 'drug'}, {'concept': 'nutrient'}], 'physically interacts with', {'concept': 'nutrient'}]
SELECT DISTINCT ?y WHERE { { { ?z property:physically_interacts_with ?y } UNION { ?y property:physically_interacts_with ?y } } . ?z rdf:type ontology:drug . ?y rdf:type ontology:nutrient }
[]
Simple Question (Direct)
Simple Question|Mult. Entity|Indirect
Q2034004 Q1949517 Q21115043
P129
Q8386
USER
Which drugs communicates with D(2) dopamine receptor, 5-hydroxytryptamine receptor 2A and 5-hydroxytryptamine receptor 1A ?
(c(Q8386),P129,Q2034004) (c(Q8386),P129,Q1949517) (c(Q8386),P129,Q21115043)
action union
action filter_type
action find
entity Q2034004
relation P129
type Q8386
action filter_type
action find
entity Q1949517
relation P129
type Q8386
action filter_type
action find
entity Q21115043
relation P129
type Q8386
[{'concept': 'Q8386'}, 'P129', 'Q2034004'] [{'concept': 'Q8386'}, 'P129', 'Q1949517'] [{'concept': 'Q8386'}, 'P129', 'Q21115043']
SELECT DISTINCT ?k WHERE { ?l property:P129 ?k . VALUES ( ?l ) { ( resource:Q2034004 ) ( resource:Q1949517 ) } }
D(2) dopamine receptor 5-hydroxytryptamine receptor 2A 5-hydroxytryptamine receptor 1A
action union
action filter_type
action find
entity D(2) dopamine receptor
relation physically interacts with
type drug
action filter_type
action find
entity 5-hydroxytryptamine receptor 2A
relation physically interacts with
type drug
action filter_type
action find
entity 5-hydroxytryptamine receptor 1A
relation physically interacts with
type drug
[{'concept': 'drug'}, 'physically interacts with', 'D(2) dopamine receptor'] [{'concept': 'drug'}, 'physically interacts with', '5-hydroxytryptamine receptor 2A'] [{'concept': 'drug'}, 'physically interacts with', '5-hydroxytryptamine receptor 1A']
SELECT DISTINCT ?k WHERE { ?l property:physically_interacts_with ?k . VALUES ( ?l ) { ( resource:D(2)_dopamine_receptor ) ( resource:5-hydroxytryptamine_receptor_2A ) } }
[]
drug
Q407972 Q407972 Q407972
SYSTEM
chlorpromazine
Q2359690 Q411188 Q221361 Q4927426 Q422418 Q6821618 Q58614 Q424238 Q567927 Q418785 Q407972 Q423308 Q251347 Q413581 Q411985 Q423520 Q418050 Q1752915 Q421304 Q412443 Q408535 Q201872 Q269111 Q420590 Q4890814 Q408588 Q170304 Q420350 Q419822 Q415752 Q6590349 Q226905 Q58376 Q7702355 Q424446 Q205517 Q1452256 Q144085 Q2924764 Q411188 Q221361 Q4927426 Q416632 Q340139 Q6821618 Q3008033 Q58614 Q407972 Q423308 Q251347 Q413581 Q44931 Q415996 Q423520 Q418050 Q1752915 Q411932 Q408300 Q3563148 Q412443 Q408535 Q201872 Q269111 Q23118 Q2608288 Q418101 Q415752 Q415118 Q226905 Q411457 Q6824154 Q421930 Q419186 Q58376 Q58375 Q7702355 Q395229 Q416701 Q424446 Q424442 Q205517 Q424477 Q144085 Q593166 Q6952318 Q411188 Q221361 Q410195 Q6821618 Q3008033 Q407972 Q413784 Q423308 Q251347 Q7340703 Q413581 Q415996 Q418050 Q421315 Q408300 Q3563148 Q412443 Q408535 Q415032 Q201872 Q269111 Q412226 Q218820 Q4199443 Q408588 Q23118 Q212171 Q418101 Q415752 Q415118 Q412194 Q226905 Q6824154 Q416978 Q58375 Q7702355 Q424446 Q205517 Q144085
(c(Q8386),P129,Q2034004) (c(Q8386),P129,Q1949517) (c(Q8386),P129,Q21115043)
action union
action filter_type
action find
entity Q2034004
relation P129
type Q8386
action filter_type
action find
entity Q1949517
relation P129
type Q8386
action filter_type
action find
entity Q21115043
relation P129
type Q8386
[ANSWER], [ANSWER] and [ANSWER] communicate with D(2) dopamine receptor, 5-hydroxytryptamine receptor 2A and 5-hydroxytryptamine receptor 1A
[{'concept': 'Q8386'}, 'P129', 'Q2034004'] [{'concept': 'Q8386'}, 'P129', 'Q1949517'] [{'concept': 'Q8386'}, 'P129', 'Q21115043']
SELECT DISTINCT ?k WHERE { ?l property:P129 ?k . VALUES ( ?l ) { ( resource:Q2034004 ) ( resource:Q1949517 ) } }
prochlorperazine aripiprazole clozapine blonanserin sulpiride mesoridazine loxapine domperidone pipotiazine amisulpride chlorpromazine cabergoline haloperidol bromocriptine rotigotine perphenazine sertindole trifluoperazine pramipexole risperidone quetiapine Olanzapine apomorphine ropinirole benzquinamide vilazodone dopamine flupentixol promazine pergolide perospirone zotepine fluphenazine terguride lisuride ziprasidone (-)-sulpiride pimozide brexpiprazole aripiprazole clozapine blonanserin nefazodone lorcaserin mesoridazine Cyamemazine loxapine chlorpromazine cabergoline haloperidol bromocriptine sarpogrelate flibanserin perphenazine sertindole trifluoperazine duloxetine fluspirilene vortioxetine risperidone quetiapine Olanzapine apomorphine LSD thiothixene pindolol pergolide pipamperone zotepine trazodone methiothepin mirtazapine ergotamine fluphenazine thioridazine terguride agomelatine mianserin lisuride methysergide ziprasidone methylergonovine pimozide molindone NAN 190 aripiprazole clozapine frovatriptan mesoridazine Cyamemazine chlorpromazine pizotifen cabergoline haloperidol robalzotan bromocriptine flibanserin sertindole naratriptan fluspirilene vortioxetine risperidone quetiapine eletriptan Olanzapine apomorphine yohimbine zolmitriptan iloperidone vilazodone LSD rizatriptan pindolol pergolide pipamperone buspirone zotepine methiothepin sumatriptan thioridazine terguride lisuride ziprasidone pimozide
Chlorpromazine, chlorpromazine and chlorpromazine communicate with D(2) dopamine receptor, 5-hydroxytryptamine receptor 2A and 5-hydroxytryptamine receptor 1A
chlorpromazine chlorpromazine chlorpromazine
action union
action filter_type
action find
entity D(2) dopamine receptor
relation physically interacts with
type drug
action filter_type
action find
entity 5-hydroxytryptamine receptor 2A
relation physically interacts with
type drug
action filter_type
action find
entity 5-hydroxytryptamine receptor 1A
relation physically interacts with
type drug
[{'concept': 'drug'}, 'physically interacts with', 'D(2) dopamine receptor'] [{'concept': 'drug'}, 'physically interacts with', '5-hydroxytryptamine receptor 2A'] [{'concept': 'drug'}, 'physically interacts with', '5-hydroxytryptamine receptor 1A']
SELECT DISTINCT ?k WHERE { ?l property:physically_interacts_with ?k . VALUES ( ?l ) { ( resource:D(2)_dopamine_receptor ) ( resource:5-hydroxytryptamine_receptor_2A ) } }
[]