Simple Question (Direct)
Simple Question
Q14914466
P682
Q1057
USER
What is the metabolic process that Serine/threonine-protein kinase receptor R3 is involved in ?
(Q14914466,P682,c(Q1057))
action filter_type
action find
entity Q14914466
relation P682
type Q1057
['Q14914466', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?k WHERE { resource:Q14914466 property:P682 ?k . ?k rdf:type ontology:Q1057 }
Serine/threonine-protein kinase receptor R3
action filter_type
action find
entity Serine/threonine-protein kinase receptor R3
relation biological process
type metabolic process
['Serine/threonine-protein kinase receptor R3', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?k WHERE { resource:Serine/threonine-protein_kinase_receptor_R3 property:biological_process ?k . ?k rdf:type ontology:metabolic_process }
[]
metabolic process
Q14863351
SYSTEM
signal transduction by protein phosphorylation
Q14863351
(Q14914466,P682,c(Q1057))
action filter_type
action find
entity Q14914466
relation P682
type Q1057
The metabolic process that Serine / threonine-protein kinase receptor R3 is involved in is l [ANSWER]
['Q14914466', 'P682', {'concept': 'Q1057'}]
SELECT DISTINCT ?k WHERE { resource:Q14914466 property:P682 ?k . ?k rdf:type ontology:Q1057 }
signal transduction by protein phosphorylation
The metabolic process that Serine / threonine-protein kinase receptor R3 is involved in is l signal transduction by protein phosphorylation
signal transduction by protein phosphorylation
action filter_type
action find
entity Serine/threonine-protein kinase receptor R3
relation biological process
type metabolic process
['Serine/threonine-protein kinase receptor R3', 'biological process', {'concept': 'metabolic process'}]
SELECT DISTINCT ?k WHERE { resource:Serine/threonine-protein_kinase_receptor_R3 property:biological_process ?k . ?k rdf:type ontology:metabolic_process }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q14914466
P688
Q863908
USER
Which nucleic acid sequence encodes Serine/threonine-protein kinase receptor R3 ?
(c(Q863908),P688,Q14914466)
action filter_type
action find_reverse
entity Q14914466
relation P688
type Q863908
[{'concept': 'Q863908'}, 'P688', 'Q14914466']
SELECT DISTINCT ?t WHERE { ?t property:P688 resource:Q14914466 . ?t rdf:type ontology:Q863908 }
Serine/threonine-protein kinase receptor R3
action filter_type
action find_reverse
entity Serine/threonine-protein kinase receptor R3
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Serine/threonine-protein kinase receptor R3']
SELECT DISTINCT ?t WHERE { ?t property:encodes resource:Serine/threonine-protein_kinase_receptor_R3 . ?t rdf:type ontology:nucleic_acid_sequence }
[]
nucleic acid sequence
Q14914464
SYSTEM
Acvrl1
Q14914464
(c(Q863908),P688,Q14914466)
action filter_type
action find_reverse
entity Q14914466
relation P688
type Q863908
[ANSWER] encodes Serine/threonine-protein kinase receptor R3
[{'concept': 'Q863908'}, 'P688', 'Q14914466']
SELECT DISTINCT ?t WHERE { ?t property:P688 resource:Q14914466 . ?t rdf:type ontology:Q863908 }
Acvrl1
Acvrl1 encodes Serine/threonine-protein kinase receptor R3
Acvrl1
action filter_type
action find_reverse
entity Serine/threonine-protein kinase receptor R3
relation encodes
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'encodes', 'Serine/threonine-protein kinase receptor R3']
SELECT DISTINCT ?t WHERE { ?t property:encodes resource:Serine/threonine-protein_kinase_receptor_R3 . ?t rdf:type ontology:nucleic_acid_sequence }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q14914464
P684
Q863908
USER
Which is the species that has that one as its orthologous gene ?
(c(Q863908),P684,Q14914464)
action filter_type
action find
entity Q14914464
relation P684
type Q863908
[{'concept': 'Q863908'}, 'P684', 'Q14914464']
SELECT DISTINCT ?n WHERE { ?n rdf:type ontology:Q863908 . resource:Q14914464 property:P684 ?n }
Acvrl1
action filter_type
action find
entity Acvrl1
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'Acvrl1']
SELECT DISTINCT ?n WHERE { ?n rdf:type ontology:nucleic_acid_sequence . resource:Acvrl1 property:ortholog ?n }
[]
nucleic acid sequence
Q14914463
SYSTEM
ACVRL1
Q14914463
(c(Q863908),P684,Q14914464)
action filter_type
action find
entity Q14914464
relation P684
type Q863908
[ANSWER] is the species that has that one as its orthologous gene
[{'concept': 'Q863908'}, 'P684', 'Q14914464']
SELECT DISTINCT ?n WHERE { ?n rdf:type ontology:Q863908 . resource:Q14914464 property:P684 ?n }
ACVRL1
ACVRL1 is the species that has that one as its orthologous gene
ACVRL1
action filter_type
action find
entity Acvrl1
relation ortholog
type nucleic acid sequence
[{'concept': 'nucleic acid sequence'}, 'ortholog', 'Acvrl1']
SELECT DISTINCT ?n WHERE { ?n rdf:type ontology:nucleic_acid_sequence . resource:Acvrl1 property:ortholog ?n }
[]
Simple Question (Coreferenced)
Simple Question|Single Entity|Indirect
Q14914463
P703
Q16521
USER
Which taxon is that nucleic acid sequence found in ?
(Q14914463,P703,c(Q16521))
action filter_type
action find
entity Q14914463
relation P703
type Q16521
['Q14914463', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?i WHERE { resource:Q14914463 property:P703 ?i . ?i rdf:type ontology:Q16521 }
ACVRL1
action filter_type
action find
entity ACVRL1
relation found in taxon
type taxon
['ACVRL1', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?i WHERE { resource:ACVRL1 property:found_in_taxon ?i . ?i rdf:type ontology:taxon }
[]
taxon
Q15978631
SYSTEM
Homo sapiens
Q15978631
(Q14914463,P703,c(Q16521))
action filter_type
action find
entity Q14914463
relation P703
type Q16521
That nucleic acid sequence is found in [ANSWER]
['Q14914463', 'P703', {'concept': 'Q16521'}]
SELECT DISTINCT ?i WHERE { resource:Q14914463 property:P703 ?i . ?i rdf:type ontology:Q16521 }
Homo sapiens
That nucleic acid sequence is found in Homo sapiens
Homo sapiens
action filter_type
action find
entity ACVRL1
relation found in taxon
type taxon
['ACVRL1', 'found in taxon', {'concept': 'taxon'}]
SELECT DISTINCT ?i WHERE { resource:ACVRL1 property:found_in_taxon ?i . ?i rdf:type ontology:taxon }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Mult. entity type
Q14914463 Q18251303
P688
Q181394
USER
How many nutrients are ACVRL1 or Hpgd an encoding of ?
(Q14914463,P688,c(Q181394)) (Q18251303,P688,c(Q181394))
action count
action union
action filter_type
action find
entity Q14914463
relation P688
type Q181394
action filter_type
action find
entity Q18251303
relation P688
type Q181394
['Q14914463', 'P688', {'concept': 'Q181394'}] ['Q18251303', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?m ) AS ?t ) WHERE { { resource:Q18251303 property:P688 ?m . ?m rdf:type ontology:Q181394 } UNION { resource:Q14914463 property:P688 ?m . ?m rdf:type ontology:Q181394 } }
ACVRL1 Hpgd
action count
action union
action filter_type
action find
entity ACVRL1
relation encodes
type nutrient
action filter_type
action find
entity Hpgd
relation encodes
type nutrient
['ACVRL1', 'encodes', {'concept': 'nutrient'}] ['Hpgd', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?m ) AS ?t ) WHERE { { resource:Hpgd property:encodes ?m . ?m rdf:type ontology:nutrient } UNION { resource:ACVRL1 property:encodes ?m . ?m rdf:type ontology:nutrient } }
[]
nutrient
SYSTEM
3
Q21117831 Q21988899 Q4650909
(Q14914463,P688,c(Q181394)) (Q18251303,P688,c(Q181394))
action count
action union
action filter_type
action find
entity Q14914463
relation P688
type Q181394
action filter_type
action find
entity Q18251303
relation P688
type Q181394
[ANSWER]
['Q14914463', 'P688', {'concept': 'Q181394'}] ['Q18251303', 'P688', {'concept': 'Q181394'}]
SELECT DISTINCT ( COUNT ( ?m ) AS ?t ) WHERE { { resource:Q18251303 property:P688 ?m . ?m rdf:type ontology:Q181394 } UNION { resource:Q14914463 property:P688 ?m . ?m rdf:type ontology:Q181394 } }
Receptor protein serine/threonine kinase 15-hydroxyprostaglandin dehydrogenase [NAD(+)] Serine/threonine-protein kinase receptor R3
3
action count
action union
action filter_type
action find
entity ACVRL1
relation encodes
type nutrient
action filter_type
action find
entity Hpgd
relation encodes
type nutrient
['ACVRL1', 'encodes', {'concept': 'nutrient'}] ['Hpgd', 'encodes', {'concept': 'nutrient'}]
SELECT DISTINCT ( COUNT ( ?m ) AS ?t ) WHERE { { resource:Hpgd property:encodes ?m . ?m rdf:type ontology:nutrient } UNION { resource:ACVRL1 property:encodes ?m . ?m rdf:type ontology:nutrient } }
[]
Quantitative Reasoning (Count) (All)
Quantitative|Count|Logical operators
Q15978631
P703
Q11173 Q11367
USER
How many chemical compounds and lipids are found in the taxon Homo sapiens ?
(c(Q11173),P703,Q15978631) (c(Q11367),P703,Q15978631)
action count
action union
action filter_type
action find_reverse
entity Q15978631
relation P703
type Q11173
action filter_type
action find_reverse
entity Q15978631
relation P703
type Q11367
[{'concept': 'Q11173'}, 'P703', 'Q15978631'] [{'concept': 'Q11367'}, 'P703', 'Q15978631']
SELECT DISTINCT ( COUNT ( ?k ) AS ?b ) WHERE { { ?k property:P703 resource:Q15978631 . ?k rdf:type ontology:Q11367 } UNION { ?k property:P703 resource:Q15978631 . ?k rdf:type ontology:Q11173 } }
Homo sapiens
action count
action union
action filter_type
action find_reverse
entity Homo sapiens
relation found in taxon
type chemical compound
action filter_type
action find_reverse
entity Homo sapiens
relation found in taxon
type lipid
[{'concept': 'chemical compound'}, 'found in taxon', 'Homo sapiens'] [{'concept': 'lipid'}, 'found in taxon', 'Homo sapiens']
SELECT DISTINCT ( COUNT ( ?k ) AS ?b ) WHERE { { ?k property:found_in_taxon resource:Homo_sapiens . ?k rdf:type ontology:lipid } UNION { ?k property:found_in_taxon resource:Homo_sapiens . ?k rdf:type ontology:chemical_compound } }
[]
chemical compound lipid
SYSTEM
2 chemical compounds and 1 lipids
Q2823281 Q6718329 Q13645602
(c(Q11173),P703,Q15978631) (c(Q11367),P703,Q15978631)
action count
action union
action filter_type
action find_reverse
entity Q15978631
relation P703
type Q11173
action filter_type
action find_reverse
entity Q15978631
relation P703
type Q11367
[ANSWER]
[{'concept': 'Q11173'}, 'P703', 'Q15978631'] [{'concept': 'Q11367'}, 'P703', 'Q15978631']
SELECT DISTINCT ( COUNT ( ?k ) AS ?b ) WHERE { { ?k property:P703 resource:Q15978631 . ?k rdf:type ontology:Q11367 } UNION { ?k property:P703 resource:Q15978631 . ?k rdf:type ontology:Q11173 } }
LPA MT-RNR1 MT-RNR2
2 chemical compounds and 1 lipids
action count
action union
action filter_type
action find_reverse
entity Homo sapiens
relation found in taxon
type chemical compound
action filter_type
action find_reverse
entity Homo sapiens
relation found in taxon
type lipid
[{'concept': 'chemical compound'}, 'found in taxon', 'Homo sapiens'] [{'concept': 'lipid'}, 'found in taxon', 'Homo sapiens']
SELECT DISTINCT ( COUNT ( ?k ) AS ?b ) WHERE { { ?k property:found_in_taxon resource:Homo_sapiens . ?k rdf:type ontology:lipid } UNION { ?k property:found_in_taxon resource:Homo_sapiens . ?k rdf:type ontology:chemical_compound } }
[]
Simple Question (Direct)
Simple Question|Single Entity
Q14914464
P702
Q181394
USER
Which nutrient does Acvrl1 encode ?
(c(Q181394),P702,Q14914464)
action filter_type
action find_reverse
entity Q14914464
relation P702
type Q181394
[{'concept': 'Q181394'}, 'P702', 'Q14914464']
SELECT DISTINCT ?u WHERE { ?u property:P702 resource:Q14914464 . ?u rdf:type ontology:Q181394 }
Acvrl1
action filter_type
action find_reverse
entity Acvrl1
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'Acvrl1']
SELECT DISTINCT ?u WHERE { ?u property:encoded_by resource:Acvrl1 . ?u rdf:type ontology:nutrient }
[]
nutrient
Q14914466
SYSTEM
Serine/threonine-protein kinase receptor R3
Q14914466
(c(Q181394),P702,Q14914464)
action filter_type
action find_reverse
entity Q14914464
relation P702
type Q181394
Acvrl1 encodes the [ANSWER]
[{'concept': 'Q181394'}, 'P702', 'Q14914464']
SELECT DISTINCT ?u WHERE { ?u property:P702 resource:Q14914464 . ?u rdf:type ontology:Q181394 }
Serine/threonine-protein kinase receptor R3
Acvrl1 encodes the Serine/threonine-protein kinase receptor R3
Serine/threonine-protein kinase receptor R3
action filter_type
action find_reverse
entity Acvrl1
relation encoded by
type nutrient
[{'concept': 'nutrient'}, 'encoded by', 'Acvrl1']
SELECT DISTINCT ?u WHERE { ?u property:encoded_by resource:Acvrl1 . ?u rdf:type ontology:nutrient }
[]
Verification (Boolean) (All)
Verification|2 entities, one direct and one indirect, subject is indirect
Q14914466 Q14914464
P702
Q863908
USER
Does Acvrl1 encode that nutrient ?
(Q14914466,P702,Q14914464)
action is_in
entity Q14914464
action find
entity Q14914466
relation P702
['Q14914466', 'P702', 'Q14914464']
ASK WHERE { resource:Q14914466 property:P702 resource:Q14914464 }
Serine/threonine-protein kinase receptor R3 Acvrl1
action is_in
entity Acvrl1
action find
entity Serine/threonine-protein kinase receptor R3
relation encoded by
['Serine/threonine-protein kinase receptor R3', 'encoded by', 'Acvrl1']
ASK WHERE { resource:Serine/threonine-protein_kinase_receptor_R3 property:encoded_by resource:Acvrl1 }
[]
nucleic acid sequence
SYSTEM
YES
(Q14914466,P702,Q14914464)
action is_in
entity Q14914464
action find
entity Q14914466
relation P702
[ANSWER]
['Q14914466', 'P702', 'Q14914464']
ASK WHERE { resource:Q14914466 property:P702 resource:Q14914464 }
Yes
action is_in
entity Acvrl1
action find
entity Serine/threonine-protein kinase receptor R3
relation encoded by
['Serine/threonine-protein kinase receptor R3', 'encoded by', 'Acvrl1']
ASK WHERE { resource:Serine/threonine-protein_kinase_receptor_R3 property:encoded_by resource:Acvrl1 }
[]