Darwin’s Finches… The Galapagos finches are one of the most famous illustrations of natural selection in action. Michael Denton explains why these birds are a double-edged sword for Darwinian theory. For more information about Michael Denton, or to purchase his new book, “Evolution: Still a Theory in Crisis.”
…The Galápagos finches put on display the two strict requirements that must be present in order for natural selection to work its magic. If these two factors are not present, natural selection is impotent to change any creature at all, much less create a new species.
First, the finches’ beaks are clearly adaptive. Each distinct variation gives the lucky individual a definitive leg-up in its specific environment. There is an obvious, practical reason why the differentiation is helpful to the species in question. This is absolutely essential in order for natural selection to pick between variations in species. Natural selection can only “see” those variations that are adaptive — causing one individual to live, and carry on its genes, and another to die and not leave offspring. If a variation is neutral or does not somehow increase fitness in the specific environment the creature lives in, Darwin’s mechanism cannot select it.
Second, there is a functional continuum among the finches’ beaks. That is, between a finch with a tiny beak and a finch with a large beak, there are tiny, step-by-step changes, and each change makes the creature slightly more fit in its environment. This is also essential for natural selection to work.
The problem for Darwinian theory comes in explaining evolutionary change where, unlike the case of Darwin’s finches, these requirements are absent. First, there may not be a continuum. That is, natural selection cannot make large jumps or drastic changes. There must be small steps. Secondly, each single step must be beneficial to the individual. It is not enough for the first and last versions of the adaptation to be helpful — all the intervening steps must increase fitness as well.
There are examples of creatures throughout the biological world that break one or both of these rules. Many creatures just don’t fit the natural selection story like the Galápagos finches do….
Natural History Museums everywhere feature Darwin’s Finches as evidence for evolution theory. How do these finches support the idea of evolution? Are the changes we observe in finch beaks due to evolution or epigenetics?
The prevailing theory for the molecular basis of evolution involves genetic mutations that ultimately generate the heritable phenotypic variation on which natural selection acts. However, epigenetic transgenerational inheritance of phenotypic variation may also play an important role in evolutionary change. A growing number of studies have demonstrated the presence of epigenetic inheritance in a variety of different organisms that can persist for hundreds of generations. The possibility that epigenetic changes can accumulate over longer periods of evolutionary time has seldom been tested empirically. This study was designed to compare epigenetic changes among several closely related species of Darwin’s finches, a well-known example of adaptive radiation. Erythrocyte DNA was obtained from five species of sympatric Darwin’s finches that vary in phylogenetic relatedness. Genome-wide alterations in genetic mutations using copy number variation (CNV) were compared with epigenetic alterations associated with differential DNA methylation regions (epimutations). Epimutations were more common than genetic CNV mutations among the five species; furthermore, the number of epimutations increased monotonically with phylogenetic distance. Interestingly, the number of genetic CNV mutations did not consistently increase with phylogenetic distance. The number, chromosomal locations, regional clustering, and lack of overlap of epimutations and genetic mutations suggest that epigenetic changes are distinct and that they correlate with the evolutionary history of Darwin’s finches. The potential functional significance of the epimutations was explored by comparing their locations on the genome to the location of evolutionarily important genes and cellular pathways in birds. Specific epimutations were associated with genes related to the bone morphogenic protein, toll receptor, and melanogenesis signaling pathways. Species-specific epimutations were significantly overrepresented in these pathways. As environmental factors are known to result in heritable changes in the epigenome, it is possible that epigenetic changes contribute to the molecular basis of the evolution of Darwin’s finches.
The Origin of Life, two world views, Darwinian evolution theory vs Biblical Creation.
The RNA World Hypothesis is presented in the first half of this video from Dr. Pierre Durand, University of the Witwatersrand, Johannesburg. PhD student Nisha Dhar Quote (Via TImes Live):
‘RNA molecules were the first molecules which could have given rise to life.’
‘This event is believed to have taken place possibly 4 billion years ago, at a time when a young earth was a hostile place with a volcanic activity and an atmosphere that had yet to contain oxygen. RNA, said Durand, was hardy and would have survived these kinds of conditions.’
Presenting the Biblical Creation science explanation for the origin of life, Dr. James M. Tour (PhD., T. T., and W. F. Chao Professor of Chemistry Professor of Computer Science Professor of Materials Science and Nano Engineering — Rice University. Smalley-Curl Institute and the NanoCarbon Center.)
[Editor’s Note: The following article was written by A.P. auxiliary staff scientist Will Brooks and one of his students. Dr. Brooks holds a Ph.D. in Cell Biology from the University of Alabama at Birmingham and serves as Assistant Professor of Biology at Freed-Hardeman University.]
….Evolutionists would have us to believe that non-living elements and molecules joined together and developed increasing biological capabilities. Those who believe in intelligent design reject this hypothesis, insisting that neither RNA nor living cells are able to evolve spontaneously. While some disagreement exists among those in the evolutionary community on the time frame for such alleged reactions to occur, the consensus is that, given large amounts of time, single-celled bacteria were formed. But all known biological principles militate against this notion. Even billions of years could not provide mechanisms for the reaction products to evolve advantageous characteristics and form DNA and cell proteins, let alone create strings of RNA nucleotides, arriving at just the right sequence in order to code for a functional protein. The four nucleotide bases that form RNA (adenine, guanine, cytosine, and uracil) can be arranged in an exponential array of combinations and lengths. For an actual, functional protein to be coded, a precise sequence of nucleotides must be obtained. Forming the code for even one protein by evolutionary means is impossible, without even considering the necessity of the number that work together in a single cell.
There is no scientific evidence to suggest that RNA is spontaneously being created and capable of forming pre-cellular life today. While some artificial ribozymes have been created in the laboratory (reviewed in Chen, et al., 2007), there are still significant holes in reproducing an RNA world to support the hypothesis. The ribozymes created artificially lack the abilities to sufficiently process themselves, and there is no evidence of them producing large quantities of advantageous nucleotide sequences. Moreover, no system has ever created cellular life. There is even significant debate among scientists over the conditions and constituents of a “prebiotic Earth” model.
The RNA World Hypothesis is simply another attempt by scientists to explain the origin of life to the exclusion of the divine Creator. Given the absolute impossibility of life originating from the reactions of non-living matter, it can be justified that RNA did not predate other biological molecules. All biological molecules were created together to work in concert. RNA was designed to be the essential intermediate between DNA and proteins, making our cells capable of sustaining life as it was created. The designer of this system must be the intelligent Designer, the God of the Bible.
This is a not-too-well-known subtitle of Charles Darwin’s work. I have an introduction to this idea entitled, “Racism and Evolutionary Thought“. Stephen Jay Gould notes the affects of Darwinism on culture:
“Biological arguments for racism may have been common before 1850, but they have increased by orders of magnitude following the acceptance of evolutionary theory”
Stephen Jay Gould, Ontogeny and Phylogeny (Cambridge, MA: Harvard Press, 1977), 127.
Human Zoos tells the shocking story of how thousands of indigenous peoples were put on public display in America in the early decades of the twentieth century.
Above video description:
Often touted as “missing links” between man and apes, these native peoples were harassed and demeaned. Their public display was arranged with the enthusiastic support of the most elite members of the scientific community, and it was promoted uncritically by American’s leading newspapers. This award-winning documentary explores the heartbreaking story of what happened, shows how African-American ministers and other people of faith tried to push back, and reveals how some people today are still drawing on Social Darwinism in order to dehumanize others. The film also explores the tragic story of eugenics in America, the effort to breed human beings based on Darwinian principles.
Human Zoos was an official selection of the African World Documentary Film Festival and has won awards for Best Editing (Oregon Documentary Film Festival), Best in Show (Cinema WorldFest Awards) and Awards of Excellence from the Impact Docs Awards and the Hollywood Independent Documentary Awards.
Be sure to check out these other videos about social Darwinism.
Skull-hunters killed Aborigines and legitimized this act asserting that they were doing it for science. The skulls of the hunted natives were sold to museums after some chemical reactions that would make them look old. The skulls with bullet holes were filled in with utmost attention. According to Creation Magazine published in Australia, a group of observers that came in from South Galler were shocked when they saw that dozens of women, children and men were killed by evolutionists. Forty five skulls were chosen among the killed Aborigines, the flesh of them were set aside and boiled. The best ten were packaged to be sent to England.
Today, thousands of skulls of Aborigines are still in the warehouse of Smithsonian Institution. Some of these skulls belong to the corpses dug from the graves where as some others are the skulls of innocent people killed to prove evolution.
There were also African victims of the evolutionist violence. The most famous one was the pigmy Ota Benga who was taken to the world of the white men to be displayed as a transitional form. Oto Benga was caught in 1904 by a researcher Samuel Verner in Kongo then a colony of Belgium. The native whose name meant friend in his native language, was married and had two kids. Yet he was chained, put into a cage and sent by a boat to the evolutionist scientists who within the same year displayed him in the St. Louis World Fair together with other monkey species as the closest transitional form to humankind. Two years later, he was taken to Bronx Zoo in New York where he was, this time displayed as one of the ancestors of human beings together with a few chimpanzees, a gorilla called Dinah and an orangutan called Dohung. Dr. William T. Hornaday, the director of the zoo who was also a fanatical evolutionist delivered long speeches about how he was proud of having such a precious transitional form. The guests, on the other hand, treated Ota Benga as an ordinary animal. Ota Benga could not bear the treatment he received and committed suicide. (Here is a reggae song dedicated to Oto on A BITTA WORLD by BORROW SHANGO.)
….The many factors motivating Verner to bring Ota to the United States were complex, but he was evidently .much influenced by the theories of Charles Darwin” a theory which, as it developed, increasingly divided humankind into human contrived races (Rymer, 1992, p. 3). Darwin also believed that the blacks were an inferior race’ (Vemer, 1908a, p. 10717). Although biological racism did not begin with Darwinism, Darwin did more than any other man to popularize it among the masses. As early as 1699, English Physician Edward Tyson studied a skeleton which he believed belonged to a pygmy, concluding that this race was apes, although it was discovered that the skeleton on which this conclusion was based was actually a chimpanzee (Bradford and Blume, 1992, p. 20).
The conclusion in Vemer’s day accepted by most scientists was that after Darwin showed “that all humans descended from apes, the suspicion remained that some races had descended farther than others … [and that] some races, namely the white ones, had left the ape far behind, while other races, pygmies especially, had hardly matured at all” (Bradford and Blume, 1992, p. 20). Many scholars agreed with Sir Harry Johnson, a pygmy scholar who stated that the pygmies were “very apelike in appearance [and] their hairy skins, the length of their arms, the strength of their thickset frames, their furtive ways, all point to these people as representing man in one of his earlier forms’ (Keane 1907, p. 99). One of the most extensive early studies of the pygmies concluded that they were “queer little freaks” and
The low state of their mental development is shown by the following facts. They have no regard for time, nor have they any records or traditions of the past; no religion is known among them, nor have they any fetish rights; they do not seek to know the future by occult means… in short, they are… the closest link with the original Darwinian anthropoid ape extant” (Burrows, 1905, pp. 172, 182)….
Before posting what I did on Facebook as part of a response to a conversation regarding the below graphic… I want to say that by showing vestiges…
a rudimentary structure in humans corresponding to a functional structureor organ in ancestral animals
…in no way undermines Intelligent Design, or somehow PROVES evolution. Let me explain.
Darwin said he didn’t see an issue with whales evolving from bears, or some bear like creature. In his first edition of Origin of Species, Darwin said this:
“I can see no difficulty in a race of bears being rendered, by natural selection, more and more aquatic in their structure and habits, with larger and larger mouths,” Darwin concluded, “till a creature was produced as monstrous as a whale.”
This does not involve “devolution,” a loss of specificity which the below picture captures… but rather, evolution demands an increase in specificity in gene and DNA specificity in the creation of whole new organs and how they act. Similarly, the Archaeopteryx is proffered as an example of evolution, but evolutionists themselves would say that this is only an example of “devolution,” and not an increase of specificity in a species (a clipping from my post: “Was Archaeopteryx Devolving? Thus Losing It’s Ability to Fly?“):
Since other feathered “birds” have been found around the same time or earlier than Archaeopteryx, causing Alan Feduccia to quip, “You can’t be older than your grandfather” (Creation.com)… NATURE has published an article pointing out that Archaeopteryx is JUST LIKE modern flightless birds. And so it could have been losing its ability for flight (like modern birds have).
“We know Archaeopteryx was living on an archipelago during the Jurassic. And with its feathers and bones looking so much like modern flightless island birds, it just makes me wonder,” says…. Michael Habib, a biologist at the University of Southern California….
“Just because Archaeopteryx was the first feathered dinosaur found, doesn’t mean it has to play a central role in the actual history of the origins of birds,” says palaeontologist Thomas Holtz of the University of Maryland in College Park. “We have to remember it appears 10 million years or so after the oldest known bird-like dinosaurs and so our famous ‘first bird’ may really be a secondarily flightless one.”…
There is just as much [at best] evidence for this proposition as the next. “Devolution” — a loss of specificity/use, may be a more reasonable position to take via observed evidence. We see this all the time (directly below is an example from Lee Spetner’s new book), and EVOLUTION NEWS says that “looks like Archaeopteryx may have to be reclassified as a different sort of icon — symbolizing evolution by loss of function.” Oops.
So these types of examples ACTUALLY COUNT AGAINST the main idea that neo-Darwinism proposed… that I came from a rock.
I find it interesting that people think this whale bone pictured above is a vestigial organ. Very similar to the list of a 180 vestigial structures said to be in the human body in the late 1800’s dwindling to effectively zero, and the damage and laziness such thinking cost lives and sciences advancement (see more here):
In the 1930’s over half of all children had their tonsils and adenoids removed. In 1969, 19.5 out of every 1,000 children under the age of nine had undergone a tonsillectomy. By 1971 the frequency had dropped to only 14.8 per 1,000, with the percentage continuing to decrease in subsequent years. Most medical authorities now actively discourage tonsillectomies. Many agree with Wooley, chairman of the department of pediatrics at Wayne State University, who was quoted in Katz: “If there are one million tonsillectomies done in the United States, there are 999,000 that don’t need doing.”
Among the first medical doctors seriously to question the wisdom of tonsillectomies was Albert Kaiser. For ten years he kept complete records of the illnesses of 5,000 children. They were divided into two groups – those who had tonsils removed and those who did not. Kaiser found: “…no significant difference between the two groups in the number of colds, sore throats and other upper respiratory infections.”
Tonsils are important to young people in helping to establish the body’s defense mechanism which produces disease-fighting antibodies. Once these mechanisms are developed, the tonsils shrink to almost nothing in adults, and other organs take over this function. In the Medical World News, a story stated that although removal of tonsils at a young age obviously eliminates tonsillitis (the inflammation of the tonsils) it may significantly increase the incidence of strep-throat and even Hodgkin’s disease. In fact, according to the New York Department of Cancer Control: “…people who have had tonsillectomies are nearly three times as likely to develop Hodgkin’s Disease, a form of cancer that attacks the lymphoid tissue.”
My point is this, the Tonsils were once included in a list of 180 vestigial (“useless, or nearly useless”) organs. And because the assumption was first made that these were organs left over from a previous genetic ancestor (ape, dog, early-man, whatever), that they were deemed useless – ad hoc – because science did not know at that time what their functions were.
So for many years, doctors and scientists that accepted the evolutionary paradigm did not investigate the possible functionality of these organs. Many people suffered and died needlessly due to this philosophical assumption that evolution is true. You will see this assumption play out again and again where medical science and the evolutionary issue intersect. You see, if you come to the table with an understanding that we were created, then these structures serve a purpose, or are a neutral combination of the possible male/female outcome of the fertilized egg (for instance, male nipples). If the assumption is made that these structures are designed, then the medical world would strive to investigate and understand the organ in question, not simply state that it is useless.
Robert P Bolande, “Ritualistic Surgery – circumcision and tonsillectomy,” New England Journal of Medicine, March 13 (1969) pp. 591-595; Alvin Eden, “When Should Tonsils and Adenoids be Removed?” Family Weekly, September 25 (1977), p. 24; Lawrence Galton, “All Those Tonsil Operations: Useless? Dangerous?” Parade, May 2 (1976), pp. 26ff; Dolras Katz, “Tonsillectomy: Boom or Boondoggle?” The Detroit Free Press, April 13 (1972), p. 1-C; Samuel Lipton, “On the Psychology of Childhood Tonsillectomy,” found in: The Psychoanalysis Study of the Child (International Universities Press, New York: 1962). Galton, p. 26. Martin L. Gross, The Doctors (Random House, New York: 1966); Simpson Hall, Diseases of the Nose, Throat and Ear (E. and S. Livingston, New York: 1941). N. J. Vianna, Peter Greenwald, and U. N. Davies, September 10, 1973, p.10 Galton, p. 26-27. This is an important issue, for instance, during the famous Scopes trial in 1925 – which allowed evolution to be taught alongside creation – zoologist Horatio Hacket Newman, a defense witness, stated: “There are, according to Wiedersheim, no less than 180 vestigial structures in the human body, sufficient to make of a man a veritable walking museum of antiquities.” Also, if created by a personal God who has created sex to be pleasurable, then the nipples have a purpose other than the neutral canvas of the fertilized egg.
Jerry Bergman and George F. Howe, Vestigial Organs Are Fully Functional (Creation Research Society Books, Kansas City: MO: 1990).
SIMILARLY, the laziness in neo-Darwinian evolutionary propositions in this “example” of a vestigial organ shows the laziness in thought, and, the stalling of advancing science in understanding nature. Now, we know, and even the secular world acknowledges this fact in “discovering” [yet again] that pronouncements made by the evolutionary community of scientists is woefully wrong. Here is an example via THE DAILY MAIL – take note how I and the researches end the article:
Whale Sex Revealed: ‘Useless’ Hips Bones Are Crucial To Reproduction – And Size Really Matters, Study Finds
Whales and dolphins have pelvic bones, which are evolutionary remnants from when their ancestors walked on land more than 40 million years ago
Scientists from the University of Southern California and the Natural History Museum of Los Angeles County, analysed pelvic bones for four years
Muscles that control a cetacean’s penis attach directly to its pelvic bones
They found the bigger the animals’ testis, the bigger their pelvic bone
Males from more promiscuous species evolve larger penises, so larger pelvic bones are necessary to attach bigger muscles for penis control, they said
Study changes the way we think about vestigial structures
They wrote in the journal Evolution, the muscles that control a cetacean’s highly flexible penis, attach directly to its pelvic bones.
The scientist theorised that the pelvic bones could affect the level of control over the penis that an individual cetacean has, perhaps offering an evolutionary advantage.
To test their idea, they examined hundreds of pelvic bones and used a 3D scanner to make digital models of the curved bones in order to gain an unprecedented level of detail about their shape and size, as well as to compare them.
They then gathered data about testis size relative to the mass of whales. In the natural world, more ‘promiscuous’ species where females mate with many males, create a more competitive mating environment and the males develop larger testes as a way of attracting females.
The experts compared the size of pelvic bones to the size of an animal’s testes, relative its body size, and found that the bigger the testes, the bigger the cetacean’s pelvic bone.
Males from more promiscuous species also evolve larger penises, so larger pelvic bones appear necessary to attach larger muscles for penis control, they said.
‘Our research really changes the way we think about the evolution of whale pelvic bones in particular, but more generally about structures we call vestigial,’ Professor Dean said.
‘AS A PARALLEL, WE ARE NOW LEARNING THAT OUR APPENDIX IS ACTUALLY QUITE IMPORTANT IN SEVERAL IMMUNE PROCESSES, NOT A FUNCTIONALLY USELESS STRUCTURE,’ he added….
In conversation about the above, the person I was speaking with posted a series of evolution from creature-to-creature proving the evolution of the whale.
I have already refuted this clean progression, HERE, but I noted something that this person was not aware of. As most people are not. You see, when you bring your kid to the Natural History Museum, you see this picture of the RED OUTLINED creature in the evidence for whales evolving:
The problem with this evidence is that it is based primarily on an artists rendition. Here is the actual bones all this Ambulocetus Natans is based on — see #3:
I merely commented that his believing and passing along graphics showing full skulls by artists, or the above “skeletal” sequence, reminds me of the movie scene from the Matrix:
In similar fashion, this artistic rendition used in the Scopes “Monkey” Trial was used as evidence proving evolution:
However, this was based off a single tooth. NOT ONLY THAT, but the tooth put forward as hominid, ended up being an extinct pig’s tooth.
In similar form, many people still think the APPENDIX is a vestigial organ. Here is my response (since updated) to one of my son’s teachers in high school dealing with what was being taught as FACT… that is, that the appendix had no known use:
FULL UPDATED PAPER
Context this short paper was written:
This paper evolved over many years. It was one of the first subjects I debated at a science discussion board on the Internet many years ago prior to the NetZero days. Then I updated it to respond in writing to a Discover magazine article (a much larger paper, of which this takes up two pages).
Finally, as my son has been studying science in seventh grade, his science textbook states many “facts” wrongly, this being only one of the many I have since written about (peppered moths, embryos going through stages of a fish, homology, and the like).
I like to think that the teacher’s role is to not just teach what the “state” requires – this reminds me of the novels 1984, or Animal Farm – but to allow updated information into the classroom that will best challenge these students to become that medical doctor, chemist, or physicist. In other words, I want my son to have the best information that may spark the interest to become, say, a medical doctor. This is all that I argue for.
As it so happened, the teacher merely regurgitated what the “state” wanted her to (even after reading such a cogent and well laid response to her saying “there is no use for the appendix in the human body”). Much like when the dog cubs were taken and “educated” in the novel Animal Farm.
Much thought – and enjoy the read – SeanG!
Dr. Kawanishi, showed that human lymphoid cells in the appendix are immunologically functional as T helper cells and antibody-producing B cells, making IgA molecules in response to immunological challenges. He noted that:
“The human appendix, long considered only an accessory rudimentary organ, could posses a similar antigen uptake role prior to replacement by fibrosed tissue after repeated subclinical infections, or at least in early childhood when it is most prominent.”
The appendix is also rich in argentaffin cells, which can be identified with the use of silver salt staining. The function of these cells has long been obscure, but the evidence suggests that they may be involved with endocrine gland function. Many sources (encyclopedias, textbooks, etc.) still erroneously state that the appendix is useless. Interestingly, the Grolier Multimedia Encyclopedia states in one place: that “In humans the cecum and appendix have no important function,” and in another place that “the appendix is now thought to be one of the sites where immune responses are initiated.”
Dr. Howard R. Bierman… studied several hundred patients with leukemia, Hodgkin’s disease, cancer of the colon and cancer of the ovaries. He found that 84% [of his sample] had [their] appendix removed…. In a control group without cancer, only 25% had it removed.
Bierman himself had concluded that the appendix may be an immunological organ whose premature removal during its functional period permits leukemia and other related forms of cancer to begin their development. Bierman and his associates realized that the lymphoid tissue located on the walls of the appendix may secrete antibodies which protect the body against various viral agents.
While high school and college textbooks today will mention the appendix as vestigial, specialists in their field have for many years stated the necessity of the appendix as useful.
“There is no longer any justification for regarding the vermiform appendix as a vestigial structure.”
“For at least 2,000 years, doctors have puzzled over the function of… the thymus gland…. Modern physicians came to regard it, like the appendix, as a useless vestigial organ which had lost its original purpose, if indeed it ever had one. In the last few years, however,… men have proved that, far from being useless, the thymus is really the master gland that regulates the intricate immunity system which protects us against infectious diseases…. Recent experiments have led researchers to believe that the appendix, tonsils, and adenoids may also figure in the antibody responses.”
“The appendix is not generally credited with significant function; however, current evidence tends to involve it in the immunologic mechanism.”
“The mucosa and submucosa of the appendix are dominated by lymphoid nodules, and its primary function is as an organ of the lymphatic system.”
The appendix is in fact part of the G.A.L.T. (Gut Associated Lymphoid Tissue) system. The lymphoid follicles develop in the appendix at around two weeks after birth, which is the time when the large bowel begins to be colonized with the necessary bacteria. It is likely that its major function peaks in this neonatal period. Making it anything other than vestigial!
As Dr. Peter Faletra (Ph.D.), who is Senior Science Advisor Office of Science Department of Energy, says in response to a question on an online question-and-answer service for K-12 teachers run by the Argonne National Laboratories:
“As a histologist I see no reason to consider the v. appendix as having no function since it contains numerous lymphoid follicles that produce functional lymphocytes and a rich blood supply to communicate them. The general idea of vestigial organs is to me a measure of ignorance, arrogance and lack of imagination. Ignorance in that we label it as such because we do not know its function; arrogance in that we declare it of no value since we can see none; and lacking in imagination in so far as when we cannot see its function cannot imagine one. I call your attention to that other ‘vestigial organ’ the thymus without which, in early life, we would produce a severely compromised cell-mediated immune system as the ‘nude’ mouse and numerous thymectomized mammalian studies have shown. Although some general reference books still list the v. appendix as ‘vestigial’ most immunologists (I included) would strongly disagree!” (emphises added)
Since the above was removed, I want to embolden the thinking by excerpting a SCIENTIFIC AMERICAN article:
A study in the Journal of Evolutionary Biology finds that many more animals have appendixes than was thought, and that the appendix is not merely a remnant of a digestive organ called the cecum. All of which means that the appendix might not be so useless. Steve Mirsky reports.
Two years ago, Duke University Medical Center researchers said that the supposedly useless appendix is actually where good gut bacteria safely hide out during some unpleasant intestinal conditions.
Now the research team has looked at the appendix over evolutionary history. They found that animals have had appendixes for about 80 million years. And the organ has evolved separately at least twice, once among the weird Australian marsupials and another time in the regular old mammal lineage that we belong to.
Darwin thought that only a few animals have an appendix and that the human version was what was left of a digestive organ called the cecum. But the new study found that 70 percent of rodent and primate groups have species with an appendix….
While Scientific American still tries to relegate it to evolution, they do so by supposition. Almost by metaphysical statements. William Parker, Ph.D., assistant professor of experimental surgery, who conducted the analysis in collaboration with R. Randal Bollinger, M.D., Ph.D., Duke professor emeritus in general surgery – said this:
“While there is no smoking gun, the abundance of circumstantial evidence makes a strong case for the role of the appendix as a place where the good bacteria can live safe and undisturbed until they are needed”
WIKIPEDIA has a decent section on the appendix’s function as well.
PS – (from the original letter) This P.S. was to the teacher after she responded to my e-mail, I corrected her on something that any science teacher who isn’t guided by a presupposed philosophy – namely Naturalism – would have correctly defined.
Oh, I forgot, as I was falling asleep last night and running through the day in my head, something occurred to me. You mentioned that theories are, quote:
“Theories are well tested concepts scientists use to help explain something based on repeated findings.”
Yes, a great quick explanation of a proper theory. However, when the appendix was placed on the vestigial organ list along with 180 other organs by Ernst Haekel in the late 1800‘s – where it has stayed since – no repeatable tests were ever done to confirm the hypothesis that it was useless. In fact, every medical test done of the type of tissue found (argentaffin cells, and lymphoid cells) in the appendix shows that it has a use.
So I would say that the theory that it is useful is quite sound, where as the hypothesis that it is useless is waning and ill founded ~ un-scientific in other words.
H. Kawanishi, “Immunocompetence of Normal Appendiceal Lymphoid cells: in vitro studies,” Immunology, 60(1) (1987), 19-28.
 Marti-Ibanez (editor), “Tuber of Life,” M. D. Magazine (1970) #14, p. 240; William J. Banks, Applied Veterinary Histology (Williams and Wilkins, Baltimore: 1981), 390.
 Richard G. Culp, Remember thy Creator (Baker Book House, Grand Rapids,; MI: 1975).
Howard R. Bierman, “Human Appendix and Neoplasia,” Cancer 21 (1) (1968), 109-118.
 William Straus, Quarterly Review of Biology (1947), 149.
“The Useless Gland that Guards Our Health,” in Reader’s Digest, November (1966), 229, 235.
 Henry L. Bockus, Gastroenterology, 2:1134-1148 [chapter The Appendix, by Gordon McHardy], (W.B. Saunders Company, Philadelphia, Pennslyvania: 1976).
 Frederic H. Martini, Ph.D., Fundamentals of Anatomy and Physiology, (Prentice Hall, Englewood Cliffs, New Jersey: 1995), 916
(Since removed) From the site Newton, which is an electronic community for Science, Math, and Computer Science K-12 Educators. Argonne National Laboratory, Division of Educational Programs, Harold Myron, Ph.D., Division Director. Quote: http://www.newton.dep.anl.gov/askasci/mole00/mole00225.htm Home page: http://www.newton.dep.anl.gov/
 “That’s No Vestigial Organ, That’s My Appendix,” Scientific American (8-24-2009), found at: http://tinyurl.com/ycb9dcnv
Duke University Medical Center, “Appendix isn’t useless at all: It’s a safe house for bacteria,” EurekaAlert! (AAAS | 10-08-2008); found at: http://tinyurl.com/yadgop2l
 Appendix, Functions – found at: http://tinyurl.com/k245vmb
BTW, LANGUAGE WARNING for the following video (he is an atheist):
One must take note I am a creationist (in fact, a young earth creationist) and reject many of the artistic representations of entire clans and family units from a couple of teeth. I will merely assume “evolutionary” thinking to make my point[s]. Also note that the “out of Africa” and now, “out of Europe” theories have racial overtones and consequences if evolutionary naturalism is true.
If one throws all-in-to naturalistic evolution, you get an “ethnicity” [some call race] evolving before or after others ~ or ~ devolving from an ethnicity [or, species].
Biological arguments for racism may have been common before 1850, but they have increased by orders of magnitude following the acceptance of evolutionary theory
Stephen Jay Gould, Ontogeny and Phylogeny (Cambridge, MA: Harvard Press, 1977), 127.
Several skeletons up end the sparse evidence for the human evolutionary tree (via TELEGRAPH).
“The history of human evolution has been rewritten after scientists discovered that Europe was the birthplace of mankind, not Africa… two fossils of an ape-like creature which had human-like teeth have been found in Bulgaria and Greece, dating to 7.2 million years ago.”
“The Races Of Man – At the present time there exists upon the earth five races or varieties of man, each very different from the other in instincts, social customs, and, to an extent in structure. These are the Ethiopian or Negro type, originating in Africa; the Malay or brown race, from the Islands of the Pacific; the American Indian; the Mongolian or yellow race, including the natives of China, Japan, and the Eskimos; and finally, the highest of all, the Caucasians, represented by the civilized white inhabitants of Europe and America”
George William Hunter, A Civic Biology Presented in Problems (New York, NY: The American Book Company, 1914) 196. (For those that do not know, this was a textbook used in classrooms in public schools.)
7.2 million BC is a HUGE jump back in time that negates MOST of the African fossils. If proto-humans were already living in Bulgaria, or in sites now sunk under the Mediterranean Sea, the ENTIRE collection of African fossils is meaningless.
That is, some Europeans wandered SOUTH around 1 million years ago instead of some Africans wandering NORTH. It would also explain why negroid features exist only in Africa: they’re mutations from the common European stock from which the rest of the world descends.
It should be interesting to see what else turns up in Europe.
Sorry Black Lives Matter, so sad that you are not the cradle of civilization (assuming naturalistic evolution). Two books that just got a boost:
An earlier story has thrown a monkey wrench into the old story of human ancestry:
The thighbone of the 400,000-year-old hominid from Sima de los Huesos, Spain.
Scientists have found the oldest DNA evidence yet of humans’ biological history. But instead of neatly clarifying human evolution, the finding is adding new mysteries.
In a paper in the journal Nature, scientists reported Wednesday that they had retrieved ancient human DNA from a fossil dating back about 400,000 years, shattering the previous record of 100,000 years.
The fossil, a thigh bone found in Spain, had previously seemed to many experts to belong to a forerunner of Neanderthals. But its DNA tells a very different story. It most closely resembles DNA from an enigmatic lineage of humans known as Denisovans. Until now, Denisovans were known only from DNA retrieved from 80,000-year-old remains in Siberia, 4,000 miles east of where the new DNA was found.
The mismatch between the anatomical and genetic evidence surprised the scientists, who are now rethinking human evolution over the past few hundred thousand years….
Consider the following excerpt from a letter written by Charles Darwin in 1881:
“I could show fight on natural selection having done and doing more for the progress of civilization than you seem inclined to admit…. The more civilized so-called Caucasian races have beaten the Turkish hollow in the struggle for existence. Looking to the world at no very distant date, what an endless number of the lower races will have been eliminated by the higher civilized races throughout the world.”
Lest this be considered merely an aberration, note that Darwin repeated this sentiment in his book The Descent of Man, he speculated,
“At some future period, not very distant as measured by centuries, the civilized races of man will almost certainly exterminate and replace the savage races throughout the world. At the same time the anthropomorphous apes … will no doubt be exterminated. The break between man and his nearest allies will then be wider, for it will intervene between man in a more civilized state, as we may hope, even than the Caucasian, and some ape as low as a baboon, instead of as now between the negro or Australian and the gorilla.”
In addition, he subtitled his magnum opus, The Origin of Species: The Preservation of Favored Races in the Struggle for Life.
And Darwin was not alone in his racist ideology. Thomas Huxley, who coined the term agnostic and was the man most responsible for advancing Darwinian doctrine, he argued that:
“No rational man, cognizant of the facts, believes that the average negro is the equal, still less the superior, of the white man. And if this be true, it is simply incredible that, when all his disabilities are removed, and our prognathous relative has a fair field and no favour, as well as no oppressor, he will be able to compete successfully with his bigger-brained and smaller-jawed rival, in a contest which is to be carried on by thoughts and not by bites. The highest places in the hierarchy of civilization will assuredly not be within the reach of our dusky cousins, though it is by no means necessary that they should be restricted to the lowest. But whatever the position of stable equilibrium into which the laws of social gravitation may bring the negro, all responsibility for the result will henceforward lie between Nature and him. The white man may wash his hands of it, and the Caucasian conscience be void of reproach for evermore. And this, if we look to the bottom of the matter, is the real justification for the abolition policy.”
Huxley was not only militantly racist but also lectured frequently against the resurrection of Christ, in whom “[we] are all one” (Galatians 3:28). In sharp distinction to the writings of such noted evolutionists as Hrdlicka, Haeckel, and Hooton, biblical Christianity makes it crystal clear that in Christ “there is neither Jew nor Greek, slave nor free, male nor female” (Galatians 3:28). In Christianity we sing, “Red and yellow, black and white, all are precious in His sight, Jesus loves the little children of the world.” In the evolutionary hierarchy blacks are placed at the bottom, yellows and reds somewhere in the middle, and whites on top. As H. F. Osborn, director of the American Museum of National History and one of the most prominent American anthropologists of the first half of the twentieth century, put it.
“If an unbiased zoölogist were to descend upon the earth from Mars and study the races of man with the same impartiality as the races of fishes, birds and mammals, he would undoubtedly divide the existing races of man into several genera and into a very large number of species and subspecies.
“ … This is the recognition that the genus Homo is subdivided into three absolutely distinct stocks, which in zoölogy would be given the rank of species, if not of genera, stocks popularly known as the Caucasian, the Mongolian and the Negroid.
“The spiritual, intellectual, moral, and physical characters which separate these three great human stocks are far more profound and ancient than those which divide the Nordic, Alpine and Mediterranean races. In my opinion these three primary stocks diverged from each other before the beginning of the Pleistocene or Ice Age. The Negroid stock is even more ancient than the Caucasian and Mongolian, as may be proved by an examination not only of the brain, of the hair, of the bodily characters, such as the teeth, the genitalia, the sense organs, but of the instincts, the intelligence. The standard of intelligence of the average adult Negro is similar to that of the eleven-year-old youth of the species Homo sapiens.”
Think of the historical consequences that are the direct and logical results of the naturalist worldview. For instance, Adolf Hitler, appealed to the people of his country to have a backbone to advance the logical outworking of their worldview. Now mind you, not all naturalists are racists or killers of the less fortunate… however, this is a logical outworking of philosophical [or, metaphysical] naturalism.
“The stronger must dominate and not mate with the weaker, which would signify the sacrifice of its own higher nature. Only the born weakling can look upon this principle as cruel, and if he does so it is merely because he is of a feebler nature and narrower mind; for if such a law [natural selection] did not direct the process of evolution then the higher development of organic life would not be conceivable at all…. If Nature does not wish that weaker individuals should mate with the stronger, she wishes even less that a superior race should intermingle with an inferior one; because in such a case all her efforts, throughout hundreds of thousands of years, to establish an evolutionary higher stage of being, may thus be rendered futile.”
Hitler referred to this dispensation of nature as “quite logical.” In fact, it was so logical to the Nazis that they built concentration camps to carry out their convictions about the human race as being “nothing but the product of heredity and environment” or as the Nazis liked to say, “of blood and soil.”
It is significant to note that some of the Crusaders and others who used force to further their creeds in the name of God were acting in direct opposition to the teachings of Christ.
The teachings of Osborn, Huxley, Hitler and others like them, however, are completely consistent with the teachings of Darwinian evolution. Indeed, social Darwinism has provided the scientific substructure for some of the most significant atrocities in human history. For evolution to succeed, it is as crucial that the unfit die as the fittest survive. Marvin Lubenow graphically portrays the ghastly consequences of such beliefs in his book Bones of Contention:
“If the unfit survived indefinitely, they would continue to ‘infect’ the fit with their less fit genes. The result is that the more fit genes would be diluted and compromised by the less fit genes, and evolution could not take place. The concept of evolution demands death. Death is thus as natural to evolution as it is foreign to biblical creation. The Bible teaches that death is a ‘foreigner,’ a condition superimposed upon humans and nature after creation. Death is an enemy, Christ has conquered it, and he will eventually destroy it. Their respective attitudes toward death reveal how many light years separate the concept of evolution from Biblical creation.”
Adolph Hitler’s philosophy that Jews were subhuman and that Aryans were supermen (mirroring the beliefs Margaret Sanger, founder of Planned Parenthood) led to the extermination of about six million Jews. In the words of Sir Arthur Keith, a militant anti-Christian physical anthropologist: “The German Fuhrer, as I have consistently maintained, is an evolutionist; he has consistently sought to make the practices of Germany conform to the theory of evolution.”
Karl Marx, the father of communism, saw in Darwinism the scientific and sociological support for an economic experiment that eclipsed even the carnage of Hitler’s Germany. His hatred of Christ and Christianity led to the mass murder of multiplied millions worldwide. Karl Marx so revered Darwin that his desire was to dedicate a portion of Das Kapital to him. In 1983, the dissident Soviet author Alexander Solzhenitsyn had been awarded the prestigious Templeton Prize for religious progress. In accepting the award, he gave a clear assessment of the tragedy that had been so devastating to his homeland:
“I have spent well-nigh fifty tears working on the history of our Revolution. In the process, I have read hundreds of books, collected hundreds of personal testimonies, and have already contributed eight volumes of my own towards the effort of clearing away the rubble left by that upheaval. But if I were to asked today the main cause of the ruinous Revolution that has swallowed up some sixty-million of our people, I could not put it more accurately than to repeat: ‘Men have forgotten God; that’s why all this has happened’.”
It should be noted as well that Darwinian evolution (man evolving from lower creatures) is sexist as well. Under the subheading “Difference in the Mental Powers of the Two Sexes,” Darwin attempted to persuade followers that…
“The chief distinction in the intellectual powers of the two sexes is shown by mans attaining to a higher eminence, in whatever he takes up, than can women – whether requiring deep thought, reason, or imagination, or merely the use of the senses and hands…We may also infer…[that] the average of mental power in man must be above that of women.”
In sharp contrast to the evolutionary dogma, Scripture makes it clear that all humanity is created in the image of God (Genesis 1:27; Acts 17:29); that there is essential equality between the sexes (Galatians 3:28); and that slavery is as repugnant to God as murder and adultery (1 Timothy 1:10).
Sir Arthur Keith, Evolution and Ethics (New York: G. P. Putnam’s Sons, 1947):
p 15 – “Meantime let me say that the conclusion I have come to is this: the law of Christ is incompatible with the law of evolution … as far as the law of evolution has worked hitherto. Nay, the two laws are at war with each other; the law of Christ can never prevail until the law of evolution is destroyed.”
p 28 – “To see evolutionary measures and tribal morality being applied rigorously to the affairs of a great modern nation we must turn again to Germany of 1942. We see Hitler devoutly convinced that evolution produces the only real basis for a national policy.”
p 72 – “Christianity makes no distinction of race or of color; it seeks to break down all racial barriers. In this respect, the hand of Christianity is against that of Nature, for are not the races of mankind the evolutionary harvest which Nature has toiled through long ages to produce? May we not say, then, that Christianity is anti-evolutionary in its aim? This may be a merit, but if so it is one which has not been openly acknowledged by Christian philosophers.”
p 150 – “The law of evolution, as formulated by Darwin, provides an explanation of wars between nations, the only reasonable explanation known to us. The law was in existence, and wars were waged, for aeons of time before Darwin was born; he did not invent the law, he only made it known to his fellow men.”
Charles Darwin, Origin of Species, last paragraph.
“Thus, from the war of nature, from famine and death, the most exalted object which we are capable of conceiving, namely the production of the higher animals, directly follows.”
 Charles Darwin, Life and Letters, I, Letter to W. Graham, July 3, 1881, p. 316; cited in Darwin and the Darwinian Revolution, by Gertrude Himmelfarb (London: Chatto & Windus, 1959), p. 343.
 Charles Darwin, The Descent of Man, 2nd ed. (New York: A. L. Burt Co., 1874), p.178.
 Thomas Huxley, Lay Sermons, Addresses and Reviews (New York: Appleton, 1871), pp 20-1.
 Henry Fairfield Osborn, “The Evolution of Human Races,”Natural History (January/February 1926), reprinted in Natural History, vol. 89 (April 1980), p. 129.
 Adolf Hitler, Mein Kampf, translator/annotator, James Murphy (New York: Hurst and Blackett, 1942), pp. 161-162.
 “The SS Blood and Soul,” one of four videos in a video series entitled, The Occult History of the Third Reich (St. Lauret, Quebec: Madacy Entertainment Group, 1998); Now in DVD – ISBN: 0974319465).
 This is a side note for those who are of the Christian faith: The Bible does not teach the horrible practices that some have committed in its name. It is true that it’s possible that religion can produce evil, and generally when we look closer at the details it produces evil because the individual people [“Christians”] are actually living in rejection of the tenets of Christianity and a rejection of the God that they are supposed to be following. So it [religion] can produce evil, but the historical fact is that outright rejection of God and institutionalizing of atheism (non-religious practices) actually does produce evil on incredible levels. We’re talking about tens of millions of people as a result of the rejection of à God. For example: the Inquisitions (2), Crusades (7), and the Salem Witch Trials killed about 40,000 persons combined (World Book Encyclopedia and Encyclopedia Americana). A blight on Christianity? Certainty. Something wrong? Dismally wrong. A tragedy? Of course. Millions and millions of people killed? No. The numbers are tragic, but pale in comparison to the statistics of what non-religious criminals have committed; the Chinese regime of Mao Tse Tung, 60 million [+] dead (1945-1965), Stalin and Khrushchev, 66 million dead (USSR 1917-1959), Khmer Rouge (Cambodia 1975-1979) and Pol Pot, one-third of their respective populations dead; etc, etc. The difference here is that these non-God movements are merely living out their worldview, the struggle for power, survival of the fittest and all that, no natural law is being violated in other words (as atheists reduce everything to natural law – materialism). However, when people have misused the Christian religion for personal gain, they are in direct violation to what Christ taught, as well as to Natural Law.
 Marvin L. Lubenow, Bones of Contention: A Creationist Assessment of Human Fossils (Grand Rapids, Michigan: Baker Book House, 1992), p. 47.
 Sir Arthur Keith, Evolution and Ethics (New York: G. P. Putnam’s Sons, 1947), p. 230. See appendix for more quotes by Keith.
BEFORE getting to the main story meant to be read via PROSLOGION (click here to jump to it if you wish), the book mentioned is partly a book about how an evolutionary specialist came to believe in God. Some scientists/specialists in their field are convinced by science and complexity that God exists (studies from their own field), but yet others are influenced by other “arguments” — like in the case of Dr. Wayne Rossiter. He acknowledged the logical conclusions of his atheism, and was disturbed by them… here is a post about the book: ANOTHER ATHEIST WHO BECAME A CHRISTIAN
…but I did want to point out what I have found to be the most interesting part of the book so far: the conversion story of its author, Dr. Wayne D. Rossiter.
Dr. Rossiter earned his Ph.D. in ecology and evolution from Rutgers University in February of 2012 and is currently an assistant professor of biology at Waynesburg University. One thing I found so fascinating about his conversion story is that it is rather different from mine. Science caused me to doubt my atheism, and an investigation of the evidence led me to a belief in Christianity. For Dr. Rossiter, however, it was not science itself that caused him to doubt his atheism. Instead, what he saw as the consequences of atheistic science caused him to fall into the Savior’s arms. Here is how he begins his conversion story:
…I had developed into a staunch and cantankerous atheist by the time I got to Rutgers to pursue a Ph.D. This was aided by an equally atheistic advisor who was of Dawkins’s ilk. Advanced education at our best universities is surprisingly insular. Like bobbleheads, we tend to read and agree on the same things, and give little to no countenance to critics of our views. (pp. 3-4)
I couldn’t agree more with his take on the insular nature of advanced education in the U.S. I vividly remember several instances from my early years in academia where a “senior” member of a research group would make fun of a position with which he disagreed, and the rest of us would bob our heads in agreement without even trying to suggest that there might be good reason to at least examine that position seriously. At the time, I didn’t understand how anti-science such actions were, but now that I look back on them, I shake my head at the sorry state of our advanced education system.
What caused Dr. Rossiter to doubt his atheism? After achieving an important milestone in every academic’s life (publication in a major journal of his field), he and his wife celebrated. He stayed up after his wife went to bed, and he became plagued by the “big questions” about life:
On what rational grounds could I care about the state of the planet (or even my family) after I’m gone? And what did I even mean by “good” or “bad”? I couldn’t argue that any objective morality existed apart from our subjective experiences. Any moral laws that might objectively exist – whether or not anyone ascribes to them – would be beyond our grasp, and we would have no objective or rational reason to obey them if they did exist. Nothing mattered. This is Dennett’s “universal acid,” and Darwin’s ideas applied that acid to the human condition. If molecules led to cells, and cells to organs, and organs to bodies, then the “molecules-to-man” hypothesis was true. We really were just wet computers responding to external stimuli in mechanical and unconscious ways. No soul, no consciousness. Just machines. I was completely and utterly devastated. (pp. 4-5)
This led to some serious soul-searching, which included psychiatric counseling. His counselor was a Christian, and that intrigued him, so he read some intellectuals who found belief in God to be both rational and compelling. This caused him to doubt his atheistic view of science, and eventually, he became a Christian. The university at which he now teaches is a Christian university….
OKAY, here is the excerpt I wish to highlight, and mind you, the ENTIRE post is well worth reading. It is in regard to the supposition based on little evidence in the classic neo-Darwinian theory (which is crumbling mind you) that the genetic code is universal… as is discussed, it is not. Here is the introduction to the information from a group via Facebook:
Hi guys, this is an extremely interesting article and the links in there too, it shows that there is not a universal genetic code, but about 19 of them, that makes a universal common ancestor impossible, one of the links takes us to the NCBI website where all the codes are listed (by the way, two members of our group made comments there, Philip C. and Otangelo G.
I am still reading Shadow of Oz by Dr. Wayne Rossiter, and I definitely plan to post a review of it when I am finished. However, I wanted to write a separate blog post about one point that he makes in Chapter 6, which is entitled “Biological Evolution.”He says:
To date, the National Center for Biotechnology Information (NCBI), which houses all published DNA sequences (as well as RNA and protein sequences), currently acknowledges nineteen different coding languages for DNA…
This was a shock to me. As an impressionable young student at the University of Rochester, I was taught quite definitively that there is only one code for DNA, and it is universal. This, of course, is often cited as evidence for evolution. Consider, for example, this statement from The Biology Encyclopedia:
For almost all organisms tested, including humans, flies, yeast, and bacteria, the same codons are used to code for the same amino acids. Therefore, the genetic code is said to be universal. The universality of the genetic code strongly implies a common evolutionary origin to all organisms, even those in which the small differences have evolved. These include a few bacteria and protozoa that have a few variations, usually involving stop codons.
Dr. Rossiter points out that this isn’t anywhere close to correct, and it presents serious problems for the idea that all life descended from a single, common ancestor.
To understand the importance of Dr. Rossiter’s point, you need to know how a cell makes proteins. The basic steps of the process are illustrated in the image at the top of this post. The “recipe” for each protein is stored in DNA, and it is coded by four different nucleotide bases (abbreviated A, T, G, and C). That “recipe” is copied to a different molecule, RNA, in a process called transcription. During that process, the nucleotide base “U” is used instead of “T,” so the copy has A, U, G, and C as its four nucleotide bases. The copy then goes to the place where the proteins are actually made, which is called the ribosome. The ribosome reads the recipe in units called codons. Each codon, which consists of three nucleotide bases, specifies a particular amino acid. When the amino acids are strung together in the order given by the codons, the proper protein is made.
The genetic code tells the cell which codon specifies which amino acid. Look, for example, at the illustration at the top of the page. The first codon in the RNA “recipe” is AUG. According to the supposedly universal genetic code, those three nucleotide bases in that order are supposed to code for one specific amino acid:methionine (abbreviated as “Met” in the illustration). The next codon (CCG) is supposed to code for the amino acid proline (abbreviated as Pro). Each possible three-letter sequence (each possible codon) codes for a specific amino acid, and the collection of all those possible codons and what they code for is often called the genetic code.
Now, once again, according to The Biology Encyclopedia (and many, many other sources), the genetic code is nearly universal. Aside from a few minor exceptions, all organisms use the same genetic code, and that points strongly to the idea that all organisms evolved from a common ancestor. However, according to the NCBI, that isn’t even close to correct. There are all sorts of exceptions to this “universal” genetic code, and I would think that some of them result in serious problems for the hypothesis of evolution….
Great stuff Maynard. Another blow to naturalistic theories and another gift to the ever growing catalog of the complexity of life.
This is not to suggest that new paradigms triumph ultimately through some mystical aesthetic. On the contrary, very few men desert a tradition for these reasons alone. Often those who do turn out to have been misled. But if a paradigm is ever to triumph it must gain some first supporters, men who will develop it to the point where hardheaded arguments can be produced and multiplied. And even those arguments, when they come, are not individually decisive. Because scientists are reasonable men, one or another argument will ultimately persuade many of them. But there is no single argument that can or should persuade them all. Rather than a single group conversion, what occurs is an increasing shift in the distribution of professional allegiances.
At the start a new candidate for paradigm may have few supporters, and on occasions the supporters’ motives may be suspect. Nevertheless, if they are competent, they will improve it, explore its possibilities, and show what it would be like to belong to the community guided by it. And as that goes on, if the paradigm is one destined to win its fight, the number and strength of the persuasive arguments in its favor will increase. More scientists will then be converted, and the exploration of the new paradigm will go on. Gradually the number of experiments, instruments, articles, and books based upon the paradigm will multiply. Still more men, convinced of the new view’s fruitfulness, will adopt the new mode of practicing normal science, until at last only a few elderly hold-outs remain.
Thomas S. Kuhn, The Structure of Scientific Revolutions, 2nd Edition (Chicago, IL: Chicago University Press, 1970), 158-159
A great definition of the Modern Synthesis can be found HERE
The first two articles are a report about the Royal Society meeting in regards to the failure of the neo-Darwinian model. The Royal Society is the world’s most distinguished and historic scientific organizations. The first article is an introduction to the upcoming event, the second is a partial description of it. What follows it are articles from scientific literature calling into question the General Theory of Evolution (GTE/NDT).
SCIENCE ALERT, “The world’s top biologists have met to discuss whether we should update evolution: Bringing Darwin’s theory into the 21st century,” Nov. 28, 2016
The world’s top biologists have met to discuss whether we should update evolution: Bringing Darwin’s theory into the 21st century. (Science Alert)
Evolutionary biology has helped scientists understand why the world looks the way it does for more than 150 years, since Charles Darwin released On the Origin of Species back in 1859.
But a team of researchers has now proposed an update to our current understanding of evolution – one that could completely shift our understanding of how species evolve.
Some of the world’s best known biologists just converged in London as part of a Royal Society meeting to discuss if it’s time to upgrade one of the most fundamental theories in science.
The researchers also argue that natural selection isn’t necessarily the primary force in evolution – the limitations of development and the environments organisms live in can also play a role.
MINA, “Scientists see the obvious, confirm Darwinism is Broken,” Dec. 14, 2016
Darwinian theory is broken and may not be fixable. That was the takeaway from a meeting last month organized by the world’s most distinguished and historic scientific organization, which went mostly unreported by the media.
The three-day conference at the Royal Society in London was remarkable in confirming something that advocates of intelligent design (ID), a controversial scientific alternative to evolution, have said for years. ID proponents point to a chasm that divides how evolution and its evidence are presented to the public, and how scientists themselves discuss it behind closed doors and in technical publications. This chasm has been well hidden from laypeople, yet it was clear to anyone who attended the Royal Society conference, as did a number of ID-friendly scientists.
The opening presentation at the Royal Society by one of those world-class biologists, Austrian evolutionary theorist Gerd Müller, underscored exactly Meyer’s contention. Dr. Müller opened the meeting by discussing several of the fundamental “explanatory deficits” of “the modern synthesis,” that is, textbook neo-Darwinian theory. According to Müller, the as yet unsolved problems include those of explaining:
-Phenotypic complexity (the origin of eyes, ears, body plans, i.e., the anatomical and structural features of living creatures);
-Phenotypic novelty, i.e., the origin of new forms throughout the history of life (for example, the mammalian radiation some 66 million years ago, in which the major orders of mammals, such as cetaceans, bats, carnivores, enter the fossil record, or even more dramatically, the Cambrian explosion, with most animal body plans appearing more or less without antecedents); and finally
-Non-gradual forms or modes of transition, where you see abrupt discontinuities in the fossil record between different types.
As Müller has explained in a 2003 work (“On the Origin of Organismal Form,” with Stuart Newman), although “the neo-Darwinian paradigm still represents the central explanatory framework of evolution, as represented by recent textbooks” it “has no theory of the generative.” In other words, the neo-Darwinian mechanism of mutation and natural selection lacks the creative power to generate the novel anatomical traits and forms of life that have arisen during the history of life. Yet, as Müller noted, neo-Darwinian theory continues to be presented to the public via textbooks as the canonical understanding of how new living forms arose – reflecting precisely the tension between the perceived and actual status of the theory that Meyer described in “Darwin’s Doubt.”
Much of the conference after Müller’s talk did discuss various other proposed evolutionary mechanisms. Indeed, the prime movers in the Royal Society event, Müller, James Shapiro, Denis Noble, and Eva Jablonka – known to evolutionary biologists as the “Third Way of Evolution” crowd, neither ID theorists nor orthodox Darwinists – have proposed repairing the explanatory deficits of the modern synthesis by highlighting evolutionary mechanisms other than random mutation and natural selection. Much debate at the conference centered around the question of whether these new mechanisms could be incorporated into the basic population genetics framework of neo-Darwinism, thus making possible a new “extended” evolutionary synthesis, or whether the emphasis on new mechanisms of evolutionary change represented a radical, and theoretically incommensurable, break with established theory. This largely semantic, or classificatory, issue obscured a deeper question that few, if any, of the presentations confronted head on: the issue of the origin of genuine phenotypic novelty – the problem that Müller described in his opening talk.
Indeed, by the end of Day 3 of the meeting, it seemed clear to many of our scientists, and others in attendance with whom they talked, that the puzzle of life’s novelties remained unsolved – if, indeed, it had been addressed at all. As a prominent German paleontologist in the crowd concluded, “All elements of the Extended Synthesis [as discussed at the conference] fail to offer adequate explanations for the crucial explanatory deficits of the Modern Synthesis (aka neo-Darwinism) that were explicitly highlighted in the first talk of the meeting by Gerd Müller.”
Rather, these complex behaviors were taken as givens, leaving the critical question of their origins more or less untouched. While there is abundant evidence that animals can learn and transmit new behaviors to their offspring – crows in Japan, for instance, have learned how to use automobile traffic to crack open nuts – all such evidence presupposes the prior existence of specific functional capacities enabling observation, learning, and the like. The evolutionary accounts of niche construction theory therefore collide repeatedly with a brick wall marked “ORIGINAL COMPLEX FUNCTIONAL CAPACITY REQUIRED HERE” – without, or beyond which, there would simply be nothing interesting to observe.James Shapiro’s talk, clearly one of the most interesting of the conference, highlighted this difficulty in its most fundamental form. Shapiro presented fascinating evidence showing, contra neo-Darwinism, the non-random nature of many mutational processes – processes that allow organisms to respond to various environmental challenges or stresses. The evidence he presented suggests that many organisms possess a kind of pre-programmed adaptive capacity – a capacity that Shapiro has elsewhere described as operating under “algorithmic control.” Yet, neither Shapiro, nor anyone else at the conference, attempted to explain how the information inherent in such algorithmic control or pre-programmed capacity might have originated. …
So one should be aware, while almost all the info posted here are from evolutionists or journals and magazines in the evolutionary field of study, intelligent design theorists have been ringing this bell for a LONG time. The more recent line of thinking that has devestated neo-Darwinian thinking the most started in 1986 with Michael Denton’s Evolution: A Theory In Crisis. Then came Phillip Johnson’s 1990 book, Darwin on Trial. Then came Darwin’s Black Box by Michael Behe (1996). (I would include in the mix a 1993 book by a non-theist, Richard Milton entitled Shattering the Myths of Darwinism.)
Here are some key definitions defined and built upon by Dr. Jay Richards:
Now, here are some journal or science magazine partial comments that call into question the Darwinian theory:
NEW SCIENTIST, “Evolution evolves: Beyond the selfish gene — For more than 150 years it has been one of science’s most successful theories, but we need to rethink evolution for the 21st century,” Sept. 21, 2016
…Some biologists are trying to shoehorn the new knowledge into traditional evolutionary thinking. Others, myself included, believe a more radical approach may be required. We don’t deny the roles of genetic inheritance and natural selection, but think we should look at evolution in a markedly different way. It is time for the theory of evolution to evolve.
NATURE, “Does evolutionary theory need a rethink?” Oct 8, 2014
Does evolutionary theory need a rethink? Yes, urgently
Without an extended evolutionary framework, the theory neglects key processes, say Kevin Laland and colleagues.
Charles Darwin conceived of evolution by natural selection without knowing that genes exist. Now mainstream evolutionary theory has come to focus almost exclusively on genetic inheritance and processes that change gene frequencies.
Yet new data pouring out of adjacent fields are starting to undermine this narrow stance. An alternative vision of evolution is beginning to crystallize, in which the processes by which organisms grow and develop are recognized as causes of evolution.
Some of us first met to discuss these advances six years ago. In the time since, as members of an interdisciplinary team, we have worked intensively to develop a broader framework, termed the extended evolutionary synthesis (EES), and to flesh out its structure, assumptions and predictions. In essence, this synthesis maintains that important drivers of evolution, ones that cannot be reduced to genes, must be woven into the very fabric of evolutionary theory.
We believe that the EES will shed new light on how evolution works. We hold that organisms are constructed in development, not simply ‘programmed’ to develop by genes. Living things do not evolve to fit into pre-existing environments, but co-construct and coevolve with their environments, in the process changing the structure of ecosystems.
The number of biologists calling for change in how evolution is conceptualized is growing rapidly. Strong support comes from allied disciplines, particularly developmental biology, but also genomics, epigenetics, ecology and social science. We contend that evolutionary biology needs revision if it is to benefit fully from these other disciplines. The data supporting our position gets stronger every day….
…Palaeoecologists like me are now bringing a new perspective to the problem. If macroevolution really is an extrapolation of natural selection and adaptation, we would expect to see environmental change driving evolutionary change. Major climatic events such as ice ages ought to leave their imprint on life as species adapt to the new conditions. Is that what actually happens?
“The link between environmental change and evolutionary change is weak – not what Darwinists might have predicted”
This view of life leads to certain consequences. Macroevolution is not the simple accumulation of microevolutionary changes but has its own processes and patterns. There can be no “laws” of evolution….
JOURNAL OF EXPERIMENTAL BIOLOGY, “Epigenetics: Scope And Mechanisms | Evolution beyond neo-Darwinism: a new conceptual framework,” 2015 (218: 7-13); doi: 10.1242/jeb.106310.
Experimental results in epigenetics and related fields of biological research show that the Modern Synthesis (neo-Darwinist) theory of evolution requires either extension or replacement. This article examines the conceptual framework of neo-Darwinism, including the concepts of ‘gene’, ‘selfish’, ‘code’, ‘program’, ‘blueprint’, ‘book of life’, ‘replicator’ and ‘vehicle’. This form of representation is a barrier to extending or replacing existing theory as it confuses conceptual and empirical matters. These need to be clearly distinguished. In the case of the central concept of ‘gene’, the definition has moved all the way from describing a necessary cause (defined in terms of the inheritable phenotype itself) to an empirically testable hypothesis (in terms of causation by DNA sequences). Neo-Darwinism also privileges ‘genes’ in causation, whereas in multi-way networks of interactions there can be no privileged cause. An alternative conceptual framework is proposed that avoids these problems, and which is more favourable to an integrated systems view of evolution.
Denis Noble developed the first mathematical model of cardiac cells in 1960 using his discovery, with his supervisor Otto Hutter, of two of the main cardiac potassium ion channels. These discoveries were published in Nature (1960) and The Journal of Physiology (1962). The work was later developed with Dick Tsien, Dario DiFrancesco, Don Hilgemann and others to become the canonical models on which more than 100 cardiac cell models are based today. All are available on the CellML website.
He was elected President of the International Union of Physiological Sciences (IUPS) at its Congress in Kyoto in 2009, and the opening speech is available as a pdf on this page. He was then elected for a second term at the 2013 Congress in Birmingham, UK. He also delivered the opening plenary lecture at the Congress (see Music of Life link) which is also published as an article in Experimental Physiology (2013).
He is the author of the first popular book on Systems Biology, The Music of Life, and his most recent lectures concern the implications for evolutionary biology. To follow the debate on this see the FAQ (Answers) pages on the Music of Life website.
Denis Noble has published more than 500 papers and 11 books. A new book is in preparation. (SOURCE)
The Below presentation notes at the 40:40 mark he asks:
do we know what the precise mechanisms for speciation are?
Then he said:
I think the honest answer is that we don’t know yet.
“The science of neo-Darwinism was poor all along, and supported by very few facts. I have become ever more convinced that, although Darwinism has been promoted as science, its unstated role has been to prop up a philosophy—the philosophy of materialism—and atheism along with it.” (Page 20)
“The scientific evidence for evolution is not only weaker than is generally supposed, but as new discoveries have been made since 1959, the reasons for accepting the theory have diminished rather than increased.” (Page 45)
“Darwinian evolution can be seen as a way of looking at the history of life through the distorting lens of Progress. Given enough time, society in general, including human beings, would be transformed into something superior and perhaps unrecognizably different.” (Page 248)
“Lewontin’s worldview encouraged him to take a critical look at natural selection, which Darwinians have almost always been reluctant to do. Today, in fact, some of those who might well agree with Lewontin about natural selection are likely to remain silent lest their unorthodoxy should attract reprisals within the academy. Lewontin had no such fears, and he made an impression on me and many others for that reason.” (Page 69)
“Darwin might well have been dismayed if the meager evidence for natural selection, assembled over many years, had been presented to him 150 years after The Origin was published. ‘A change in the ratio of preexisting varieties? That is all you have been able to come up with?’ he might reasonably have asked. It is worth bearing in mind how feeble this evidence is, any time someone tells you that Darwinism is a fact.” (Page 79)
“Natural selection functions in the realm of philosophy, not science.” (Page 81)
“Evolutionists, of course, believe that they are appealing to science, in contrast to the religionists’ reliance on faith. But the truth is that when they utter their two-word incantation, ‘natural selection,’ they are not being remotely scientific. Nor are they expected to provide any details.” (Page 123)
The larger, original file, can be found here and is well worth the watch if this subject intrigues you. I wanted to isolate how Denis Noble defines “what a gene is”? To wit, a great question starts out the above video — and as science advances, the neo-Darwinian model weakens immensely. See Dr. Noble’s lecture on this:
I do wish to add that biology… our physiology really, is also made via influences on the quantum level. ALL THIS is to say that the simplistic view of “gene to organism” is a lagging theory NOT based in current science… AND, it makes the irreducible complexity issue worse for the naturalist. For further reading on the newer field of “quantum biology,” see my post HERE. May I also note that my professor of apologetics WAAAY back in 2007 was noting this in his class. I bemoaned him then, but “bow down” to his foresight now.
The idea that Behe’s flagellum motor has been answered is wishful thinking at best, and corrupt science at it’s worst (scientism: which is an insertion of a metaphysical principle stating things like “the only quantifiable reality known is the one made up of atoms, and, science [thus defined] is the best means to understanding said reality”). Really, then, it is an “evolution-of-the-gaps” type thinking.
✿ Ken Miller’s challenge can be read here; ✿ Responses to it and derivatives to it can be found here.
But as one can see… these giants of I.D. did truly wipe the floor with their critics [full exchange].
In this public lecture at the University of California, Irvine, Professor Phillip E. Johnson explains how ambiguous terminology, faulty assumptions, and questionable rules of reasoning have transformed a theory which explains minor evolutionary change into a dogmatic naturalistic religion.
Major topics include:
Darwinism as a New Religion
Assumptions and Terminology
Darwinism and the Blind Watchmaker Hypothesis
Logical and Empirical Problems in Darwinian Theory
Rules of Reasoning in Modern Science
Some consider this to be one of Professor Johnson’s finest lectures based on his first book “Darwin on Trial.”