Nubeam-dedup: a fast and RAM-efficient tool to de-duplicate sequencing reads without mapping.SUMMARY
 We present Nubeam-dedup, a fast and RAM-efficient tool to de-duplicate sequencing reads without reference genome.  Nubeam-dedup represents nucleotides by matrices, transforms reads into products of matrices, and based on which assigns a unique number to a read.  Compared with other state-of-the-art reference-free tools, Nubeam-dedup uses 50-70% of CPU time and 10-15% of RAM.



Nubeam-dedup
Nubeam-dedup: a fast and RAM-efficient tool to de-duplicate sequencing reads without mapping.SUMMARY
 We present Nubeam-dedup, a fast and RAM-efficient tool to de-duplicate sequencing reads without reference genome.  Nubeam-dedup represents nucleotides by matrices, transforms reads into products of matrices, and based on which assigns a unique number to a read.  Compared with other state-of-the-art reference-free tools, Nubeam-dedup uses 50-70% of CPU time and 10-15% of RAM.



Nubeam-dedup
Nubeam-dedup: a fast and RAM-efficient tool to de-duplicate sequencing reads without mapping.SUMMARY
 We present Nubeam-dedup, a fast and RAM-efficient tool to de-duplicate sequencing reads without reference genome.  Nubeam-dedup represents nucleotides by matrices, transforms reads into products of matrices, and based on which assigns a unique number to a read.  Compared with other state-of-the-art reference-free tools, Nubeam-dedup uses 50-70% of CPU time and 10-15% of RAM.



Nubeam-dedup