BioAssemblyModeler (BAM): user-friendly homology modeling of protein homo- and heterooligomers.UNLABELLED
 BioAssemblyModeler (BAM) is a graphical user interface to the basic steps in homology modeling of protein homooligomers and heterooligomers from the biological assemblies provided in the PDB. 
BioAssemblyModeler
BioAssemblyModeler (BAM): user-friendly homology modeling of protein homo- and heterooligomers.UNLABELLED
 BioAssemblyModeler (BAM) is a graphical user interface to the basic steps in homology modeling of protein homooligomers and heterooligomers from the biological assemblies provided in the PDB.  BAM takes as input up to six different protein sequences and begins by assigning Pfam domains to the target sequences.  BAM provides for visual examination and mouse-editing of the alignments supported by target and template secondary structure information and a 3D viewer of the template biological assembly.  http://dunbrack.fccc.edu/BAM.
BAM
The program utilizes a complete assignment of Pfam domains to sequences in the PDB, PDBfam (http://dunbrack2.fccc.edu/protcid/pdbfam), to obtain templates that contain any or all of the domains assigned to the target sequence(s). 
PDBfam
Side-chain coordinates for a model of the biological assembly are built with the program SCWRL4. 
SCWRL4