Furthermore, the developed metabolic model is incorporated in MICRODIMS, an in-house developed individual-based modeling framework to simulate microbial colony and biofilm dynamics. 
THERM
Furthermore, the developed metabolic model is incorporated in MICRODIMS, an in-house developed individual-based modeling framework to simulate microbial colony and biofilm dynamics.  Two case studies have been elaborated using the MICRODIMS simulator:  MICRODIMS has been successfully used to reproduce complex dynamics of clustered microbial communities.
MICRODIMS