Answers.Body: <p>This is a big question (and apologies in advance for a big answer that is still insufficient in so many ways)</p>
  <p>For pelagic marine species, it can be very difficult to confidently match specific sounds to a specific species. Not only must you confirm the presence of a species in the area at the same time of a recording, but one should also <strong>exclude the presence of other species</strong>. Localization of sounds to the same location as the sighted animals as well as sufficient visual observation from a high platform (to ensure good visual coverage) strengthen the confirmation of single-species identity in a recording (see discussion in <a href="https://d1wqtxts1xzle7.cloudfront.net/45586365/rankin.etal_lissodelphis.vocals_jasa07-with-cover-page-v2.pdf?Expires=1657656026&amp;Signature=EKSaL5-T190oLx0iJGo0-nq6QteLOx9BLUrKS9BYazkC6zhiXxXeimmtI0jVFRNOVkCMiv2cRvbR6KyMSSVCexAaXRzZNA1fiwuW%7E4TzJQnn5Ve5WNkAWu7UlRe9g254p4GThyw5hUrUWo48x1xh8OZC4JhvSkaTeKT02eTg1uqcp5Peo8R7whJa53KUcbhhop3nRgOGQ2FJsm1LwpaOW66vcz1%7EF2s-NSb1fxflUqyUCqQCsqZKCpJ7HZxlfpp%7E9ayMKJgSXV8Bp%7EizHO1NVRk37XO9hhpLbb9KxxgsqsafAcZQO1ErGUnCktec2%7E-1iwFBIPEoMn%7Ea9%7EL4XauDPA__&amp;Key-Pair-Id=APKAJLOHF5GGSLRBV4ZA" rel="noreferrer">this paper</a> suggesting an early recording of northern right whale dolphins may have wrongly attributed whistles to this species).  In addition to knowing that a sound with certain characteristics can be attributed to a given species, you also need <strong>some degree of confidence that the sounds are not made by other species</strong> (see <a href="https://www.tandfonline.com/doi/pdf/10.1080/09524622.2007.9753572?needAccess=true" rel="noreferrer">this example</a> of sounds produced by sei whales that are extremely similar to sounds produced by fin whales).</p>
  <p>For most species, initial classification efforts begin with pairing a sighting of a single-species group with a near-field recording. The lower the frequency of the call of interest, the greater the range of detection and the more complicated it can be to confidently attribute sounds to that species.
  For delphinids, vocalizations can more readily be attributed to a given species (existence of species in captivity, smaller transmission range and greater ease of localization). The complication for delphinids is that they have large variability in their vocal repertoire combined with an overlap in call characteristics between many species. For some delphinid species, some of their calls may be particularly unique to that species (see <a href="https://www.cetus.ucsd.edu/docs/publications/SoldevillaJASA2008.pdf" rel="noreferrer">Soldevilla et al. 2008</a>). In her description of these species, Soldevilla refers to original work describing the echolocation clicks of these species, and her work included recordings of animals sighted in proximity to hydrophones. Once calls can be confidently identified to a particular species, and clearly differentiated from other species, researchers can then rely on these call characteristics to examine larger archives of recordings from autonomous hydrophones. To date these species-specific call characteristics have focused primarily on echolocation clicks, but there are some cases of dolphins with more stereotypic characteristics (such as <a href="https://onlinelibrary.wiley.com/doi/abs/10.1111/mms.12226" rel="noreferrer">rough-toothed dolphins</a>).<br />
  For species where we are not (yet) able to identify species-specific call characteristics, researchers have relied on machine learning tools using a larger sample of recordings (see examples by <a href="https://www.cetus.ucsd.edu/docs/publications/FrasierPLOSCB2017.pdf" rel="noreferrer">Frasier 2017</a>, <a href="https://onlinelibrary.wiley.com/doi/abs/10.1111/mms.12381" rel="noreferrer">Rankin et al. 2016</a>, <a href="https://escholarship.org/uc/item/4895m9g5" rel="noreferrer">Roch et al. 2008</a>). Again, classification techniques should be inclusive of all species in the region (and up for consideration).</p>
  <p>For baleen whales, their lower frequency sounds travel greater distances and localization is more complicated. Due to this, most research has focused on their stereotyped ‘song’ vocalizations. Many of the initial descriptions were made from handheld hydrophones in the presence of a given species (such as blue whales in Chile by <a href="https://asa.scitation.org/doi/pdf/10.1121/1.1912752?casa_token=o3SC_aV1VKUAAAAA:bvaK6mcPMbi6sdntHnutIc37mGrCnr6zNiEzTBuOcl_kpt7YKOjKo-PGQKC_rYimAFBGHGvB9YDkVy8" rel="noreferrer">Cummings and Thompson, 1971</a>), but then these have been confirmed time and again over the years. Localization of some baleen whales using tag data (example given by OP), sonobuoys (see <a href="https://asa.scitation.org/doi/full/10.1121/1.2130944?casa_token=lWCyQ43s5ZMAAAAA%3AkjKZPe9zt-Fgc95g5atqbY2Tz8tTuhXquKP7eUyrGmt1O68lkpx9RRmx9D62ji8y9nB6ACaXmTXNVIE" rel="noreferrer">McDonald et al 2005</a> or  <a href="https://swfsc-publications.fisheries.noaa.gov/publications/CR/2005/2005Ran.pdf" rel="noreferrer">Rankin et al. 2005</a> as examples) or even towed arrays (for <a href="https://web.archive.org/web/20170131153221id_/https:/swfsc.noaa.gov/uploadedFiles/Divisions/PRD/Programs/Coastal_Marine_Mammal/Rankin_JASA05_Minke_Boing.pdf" rel="noreferrer">minke whales</a>). This gets much more complicated when addressing non-song vocalizations (such as the similar fin/sei whale call noted earlier in this answer), but classification of non-song calls may be possible using novel analytical approaches, such as using Wigner-Ville tranforms to discriminate downswept calls produced by blue, fin, and se whales(see <a href="https://asa.scitation.org/doi/abs/10.1121/1.4919304" rel="noreferrer">Ou et al. 2015</a>).</p>
  <p>The OP notes that publications ‘scant detail about each call type described’. I think it is good form for any paper relying on classification of any acoustic detection as the foundation of their work to cite a solid reference that links that call to that species. That could range from a paper that unequivocally matches a call to a species (such as with minke boings) or cites a specific classification technique (ideally along with the confidence estimates for that technique). Where there remains any question in the source of a call, it would be wise to use caution in how this is approached in publications (a good example is how <a href="https://www.cetus.ucsd.edu/docs/publications/Baumann-PickeringJASA2013B.pdf" rel="noreferrer">Baumann-Pickering et al 2013</a> address beaked whale echolocation clicks that are not yet confidently identified to a specific species).</p>
  <p>Besides doing this in our own publications, we can encourage this through our peer-review.</p>
  
Answers.ContentLicense: CC BY-SA 4.0
Answers.CreationDate: 2022-07-12T20:50:49.530Z
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Answers.UserDisplayName: Shannon
Answers.Body: <p>Linking sounds to species in marine environments is a huge challenge, and as a result, the majority of biological sounds recorded underwater still are of unknown origin. That said, there are ways to do this effectively.</p>
  <p>Isolated tank recordings can be effective for describing fish and invertebrate calls. Paired video / hydrophone units can also shed light on who is producing what sound, especially if the setup includes some sort of sound localization with a hydrophone array. As for marine mammals, I have less experience in this area, but the foundational knowledge about species sounds likeley came from focal recordings made when human observers were present to verify which species was singing, and then later wearable tags on individuals. Then, sounds within long-term PAM recordings that match known sound types could be linked with species. That said, there are still ambiguities, especially in habitats where marine mammals overlap, as well as new sound types that are not well characterized (upsweep call, biotwang are some famous examples).</p>
  <p>To answer your question, in the absence of validation sources, it is impossible to know who is making specific sounds, but one can make conjectures with different levels of confidence, based on the context and prior knowledge about the sound type.</p>
  
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Answers.UserDisplayName: Ben Gottesman
Body: <p>I have read a number of marine bioacoustics papers with figures of spectrograms of different call types produced by a specific species [I'm mainly thinking about baleen whales, but could apply to others]. The data typically come from long-term moored hydrophones and typically from hard to access areas.</p>
  <p>There is often scant detail about each call type described. Was it produced once? Many times throughout the recordings? Additionally, some of these animals overlap spatially in habitats with other species that make similar call types. And in some cases, includes calls that multiple species make (e.g., gunshot call).</p>
  <p>I know for some cryptic species, dedicated visual surveys are paired with hydrophone recordings (e.g., <a href="https://asa.scitation.org/doi/full/10.1121/1.4962377" rel="noreferrer">the Bryde’s biotwang</a>) or paired/discovered with tag data (e.g., <a href="https://www.cambridge.org/core/journals/journal-of-the-marine-biological-association-of-the-united-kingdom/article/abs/two-new-grey-whale-call-types-detected-on-bioacoustic-tags/E8DBAB0308E3313695502D92E7F2E7F6" rel="noreferrer">gray whales</a>).</p>
  <p>This may apply less to song in whales (where I think there is more agreement on the source) and more about non-song vocalizations. But in other instances, and in the absence of those validation sources, how can/do we know who is making the specific sounds?</p>
  
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Comments.Text: I'm not expert enough in this to make a formal answer, but know that recording a known species in lab conditions to get examples (and ones with less background noise) is part of it
Comments.UserDisplayName: Sarah Vela
Tags: <species-identification>
Title: How do we know what species makes a specific vocalization?
ThreadText: # How do we know what species makes a specific vocalization?
  
  (Asked by: username_0 on 2022-07-11)
  
  I have read a number of marine bioacoustics papers with figures of spectrograms of different call types produced by a specific species [I'm mainly thinking about baleen whales, but could apply to others]. The data typically come from long-term moored hydrophones and typically from hard to access areas.
  
  There is often scant detail about each call type described. Was it produced once? Many times throughout the recordings? Additionally, some of these animals overlap spatially in habitats with other species that make similar call types. And in some cases, includes calls that multiple species make (e.g., gunshot call).
  
  I know for some cryptic species, dedicated visual surveys are paired with hydrophone recordings (e.g., [the Bryde’s biotwang](https://asa.scitation.org/doi/full/10.1121/1.4962377)) or paired/discovered with tag data (e.g., [gray whales](https://www.cambridge.org/core/journals/journal-of-the-marine-biological-association-of-the-united-kingdom/article/abs/two-new-grey-whale-call-types-detected-on-bioacoustic-tags/E8DBAB0308E3313695502D92E7F2E7F6)).
  
  This may apply less to song in whales (where I think there is more agreement on the source) and more about non-song vocalizations. But in other instances, and in the absence of those validation sources, how can/do we know who is making the specific sounds?
  
  **Tags:** species-identification
  
  > **Comments:**
  > **username_1**: I'm not expert enough in this to make a formal answer, but know that recording a known species in lab conditions to get examples (and ones with less background noise) is part of it  
  
  ---
  
  ## 2 answers
  
  ### Answer by username_2 on 2022-07-12. Score: 8
  
  This is a big question (and apologies in advance for a big answer that is still insufficient in so many ways)
  
  For pelagic marine species, it can be very difficult to confidently match specific sounds to a specific species. Not only must you confirm the presence of a species in the area at the same time of a recording, but one should also **exclude the presence of other species**. Localization of sounds to the same location as the sighted animals as well as sufficient visual observation from a high platform (to ensure good visual coverage) strengthen the confirmation of single-species identity in a recording (see discussion in [this paper](https://d1wqtxts1xzle7.cloudfront.net/45586365/rankin.etal_lissodelphis.vocals_jasa07-with-cover-page-v2.pdf?Expires=1657656026&Signature=EKSaL5-T190oLx0iJGo0-nq6QteLOx9BLUrKS9BYazkC6zhiXxXeimmtI0jVFRNOVkCMiv2cRvbR6KyMSSVCexAaXRzZNA1fiwuW%7E4TzJQnn5Ve5WNkAWu7UlRe9g254p4GThyw5hUrUWo48x1xh8OZC4JhvSkaTeKT02eTg1uqcp5Peo8R7whJa53KUcbhhop3nRgOGQ2FJsm1LwpaOW66vcz1%7EF2s-NSb1fxflUqyUCqQCsqZKCpJ7HZxlfpp%7E9ayMKJgSXV8Bp%7EizHO1NVRk37XO9hhpLbb9KxxgsqsafAcZQO1ErGUnCktec2%7E-1iwFBIPEoMn%7Ea9%7EL4XauDPA__&Key-Pair-Id=APKAJLOHF5GGSLRBV4ZA) suggesting an early recording of northern right whale dolphins may have wrongly attributed whistles to this species). In addition to knowing that a sound with certain characteristics can be attributed to a given species, you also need **some degree of confidence that the sounds are not made by other species** (see [this example](https://www.tandfonline.com/doi/pdf/10.1080/09524622.2007.9753572?needAccess=true) of sounds produced by sei whales that are extremely similar to sounds produced by fin whales).
  
  For most species, initial classification efforts begin with pairing a sighting of a single-species group with a near-field recording. The lower the frequency of the call of interest, the greater the range of detection and the more complicated it can be to confidently attribute sounds to that species.
  For delphinids, vocalizations can more readily be attributed to a given species (existence of species in captivity, smaller transmission range and greater ease of localization). The complication for delphinids is that they have large variability in their vocal repertoire combined with an overlap in call characteristics between many species. For some delphinid species, some of their calls may be particularly unique to that species (see [Soldevilla et al. 2008](https://www.cetus.ucsd.edu/docs/publications/SoldevillaJASA2008.pdf)). In her description of these species, Soldevilla refers to original work describing the echolocation clicks of these species, and her work included recordings of animals sighted in proximity to hydrophones. Once calls can be confidently identified to a particular species, and clearly differentiated from other species, researchers can then rely on these call characteristics to examine larger archives of recordings from autonomous hydrophones. To date these species-specific call characteristics have focused primarily on echolocation clicks, but there are some cases of dolphins with more stereotypic characteristics (such as [rough-toothed dolphins](https://onlinelibrary.wiley.com/doi/abs/10.1111/mms.12226)).  
  For species where we are not (yet) able to identify species-specific call characteristics, researchers have relied on machine learning tools using a larger sample of recordings (see examples by [Frasier 2017](https://www.cetus.ucsd.edu/docs/publications/FrasierPLOSCB2017.pdf), [Rankin et al. 2016](https://onlinelibrary.wiley.com/doi/abs/10.1111/mms.12381), [Roch et al. 2008](https://escholarship.org/uc/item/4895m9g5)). Again, classification techniques should be inclusive of all species in the region (and up for consideration).
  
  For baleen whales, their lower frequency sounds travel greater distances and localization is more complicated. Due to this, most research has focused on their stereotyped ‘song’ vocalizations. Many of the initial descriptions were made from handheld hydrophones in the presence of a given species (such as blue whales in Chile by [Cummings and Thompson, 1971](https://asa.scitation.org/doi/pdf/10.1121/1.1912752?casa_token=o3SC_aV1VKUAAAAA:bvaK6mcPMbi6sdntHnutIc37mGrCnr6zNiEzTBuOcl_kpt7YKOjKo-PGQKC_rYimAFBGHGvB9YDkVy8)), but then these have been confirmed time and again over the years. Localization of some baleen whales using tag data (example given by OP), sonobuoys (see [McDonald et al 2005](https://asa.scitation.org/doi/full/10.1121/1.2130944?casa_token=lWCyQ43s5ZMAAAAA%3AkjKZPe9zt-Fgc95g5atqbY2Tz8tTuhXquKP7eUyrGmt1O68lkpx9RRmx9D62ji8y9nB6ACaXmTXNVIE) or [Rankin et al. 2005](https://swfsc-publications.fisheries.noaa.gov/publications/CR/2005/2005Ran.pdf) as examples) or even towed arrays (for [minke whales](https://web.archive.org/web/20170131153221id_/https:/swfsc.noaa.gov/uploadedFiles/Divisions/PRD/Programs/Coastal_Marine_Mammal/Rankin_JASA05_Minke_Boing.pdf)). This gets much more complicated when addressing non-song vocalizations (such as the similar fin/sei whale call noted earlier in this answer), but classification of non-song calls may be possible using novel analytical approaches, such as using Wigner-Ville tranforms to discriminate downswept calls produced by blue, fin, and se whales(see [Ou et al. 2015](https://asa.scitation.org/doi/abs/10.1121/1.4919304)).
  
  The OP notes that publications ‘scant detail about each call type described’. I think it is good form for any paper relying on classification of any acoustic detection as the foundation of their work to cite a solid reference that links that call to that species. That could range from a paper that unequivocally matches a call to a species (such as with minke boings) or cites a specific classification technique (ideally along with the confidence estimates for that technique). Where there remains any question in the source of a call, it would be wise to use caution in how this is approached in publications (a good example is how [Baumann-Pickering et al 2013](https://www.cetus.ucsd.edu/docs/publications/Baumann-PickeringJASA2013B.pdf) address beaked whale echolocation clicks that are not yet confidently identified to a specific species).
  
  Besides doing this in our own publications, we can encourage this through our peer-review.
  
  
  ---
  
  ### Answer by username_3 on 2022-07-12. Score: 3
  
  Linking sounds to species in marine environments is a huge challenge, and as a result, the majority of biological sounds recorded underwater still are of unknown origin. That said, there are ways to do this effectively.
  
  Isolated tank recordings can be effective for describing fish and invertebrate calls. Paired video / hydrophone units can also shed light on who is producing what sound, especially if the setup includes some sort of sound localization with a hydrophone array. As for marine mammals, I have less experience in this area, but the foundational knowledge about species sounds likeley came from focal recordings made when human observers were present to verify which species was singing, and then later wearable tags on individuals. Then, sounds within long-term PAM recordings that match known sound types could be linked with species. That said, there are still ambiguities, especially in habitats where marine mammals overlap, as well as new sound types that are not well characterized (upsweep call, biotwang are some famous examples).
  
  To answer your question, in the absence of validation sources, it is impossible to know who is making specific sounds, but one can make conjectures with different levels of confidence, based on the context and prior knowledge about the sound type.
  
  
  ---
  
  