Answers.Body: <p><a href="https://discover.nci.nih.gov/cellminer/" rel="nofollow noreferrer">CellMiner</a> portal has plenty of data about NCI-60 cell lines, inclusive microarray gene-expression.</p>
  
  <p>Also, NCI-60 is a subset of the ~1000 cell lines covered by the <a href="http://www.cancerrxgene.org/downloads" rel="nofollow noreferrer">GDSC project</a> for which you have multiple types of measurements (e.g. copy-number, mutation, gene-expression).</p>
  
Answers.ContentLicense: CC BY-SA 3.0
Answers.CreationDate: 2018-01-11T13:55:09.937Z
Answers.LastActivityDate: 2018-01-11T13:55:09.937Z
Answers.UserDisplayName: Emanuel
Answers.Body: <p><a href="http://cancer.sanger.ac.uk/cell_lines/download" rel="nofollow noreferrer">Cosmic Cell Lines Project</a> provides gene expression data for 1000+ cell lines (including NCI-60 panel together with NCI-H23 cell line). For each gene in a cell line, you can get Z-score and over/under-expression status calculated across all tumor samples diploid for that gene. </p>
  
Answers.ContentLicense: CC BY-SA 3.0
Answers.CreationDate: 2018-02-13T19:32:27.483Z
Answers.LastActivityDate: 2018-02-13T19:40:57.117Z
Answers.LastEditDate: 2018-02-13T19:40:57.117Z
Answers.UserDisplayName: menenuh
Body: <p>I'm trying to retrieve the most expressed genes from a cell line from the NCI-60, lets say cell line NCI-H23, but I'm not sure where to find the gene expression data. My main goal is to create a network using that data and iRefIndex to be loaded into Cytoscape. Does anyone know where I can find the correct data or guide me in the right direction?</p>
  
Tags: <gene><drugs><cell-line>
Title: Where can I find gene expression data on one of the cell lines in NCI-60?
ThreadText: # Where can I find gene expression data on one of the cell lines in NCI-60?
  
  (Asked by: username_0 on 2018-01-10)
  
  I'm trying to retrieve the most expressed genes from a cell line from the NCI-60, lets say cell line NCI-H23, but I'm not sure where to find the gene expression data. My main goal is to create a network using that data and iRefIndex to be loaded into Cytoscape. Does anyone know where I can find the correct data or guide me in the right direction?
  
  **Tags:** gene, drugs, cell-line
  
  
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  ## 2 answers
  
  ### Answer by username_1 on 2018-01-11. Score: 2
  
  [CellMiner](https://discover.nci.nih.gov/cellminer/) portal has plenty of data about NCI-60 cell lines, inclusive microarray gene-expression.
  
  Also, NCI-60 is a subset of the ~1000 cell lines covered by the [GDSC project](http://www.cancerrxgene.org/downloads) for which you have multiple types of measurements (e.g. copy-number, mutation, gene-expression).
  
  
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  ### Answer by username_2 on 2018-02-13. Score: 2
  
  [Cosmic Cell Lines Project](http://cancer.sanger.ac.uk/cell_lines/download) provides gene expression data for 1000+ cell lines (including NCI-60 panel together with NCI-H23 cell line). For each gene in a cell line, you can get Z-score and over/under-expression status calculated across all tumor samples diploid for that gene.
  
  
  ---
  
  