Answers.Body: <p>The standard answer would be to search <a href="https://jaspar.genereg.net/search?q=tet2&amp;collection=CORE&amp;tax_group=vertebrates&amp;tax_id=all&amp;type=all&amp;class=all&amp;family=all&amp;version=all" rel="nofollow noreferrer">JASPAR</a>, to get a curated dataset. However, there does not appear to be anything coming up for TET2 in the database.</p>
  <p>If your TET2 gene is what you want specifically, you can find <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6442383/" rel="nofollow noreferrer">papers</a> that perform ChIP-seq and infer binding regions. I believe that <a href="https://genome.cshlp.org/content/suppl/2019/03/15/gr.239277.118.DC1/Supplemental_Table_S3.xlsx" rel="nofollow noreferrer">this Supp Table 3</a> contains information equivalent to a BED file for TET2.</p>
  
Answers.ContentLicense: CC BY-SA 4.0
Answers.CreationDate: 2022-02-24T19:45:54.637Z
Answers.LastActivityDate: 2022-02-24T19:45:54.637Z
Answers.UserDisplayName: Maximilian Press
Body: <p>Quick question, is there a place where one can download BED files for the binding motifs of certain transcription factors. In my case, I'm looking for a BED file for the genomic regions (enhancers) where TET2 binds to genome-wide. I'm looking to examine the DNA methylation levels in those regions.</p>
  <p>Thank You!</p>
  
Tags: <phylogenetics><bed><motifs><transcription-factors>
Title: Where to get BED files for regions that contain binding site motifs for specific transcription factors?
ThreadText: # Where to get BED files for regions that contain binding site motifs for specific transcription factors?
  
  (Asked by: username_0 on 2022-02-22)
  
  Quick question, is there a place where one can download BED files for the binding motifs of certain transcription factors. In my case, I'm looking for a BED file for the genomic regions (enhancers) where TET2 binds to genome-wide. I'm looking to examine the DNA methylation levels in those regions.
  
  Thank You!
  
  **Tags:** phylogenetics, bed, motifs, transcription-factors
  
  
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  ## 1 answers
  
  ### Answer by username_1 on 2022-02-24. Score: 1
  
  The standard answer would be to search [JASPAR](https://jaspar.genereg.net/search?q=tet2&collection=CORE&tax_group=vertebrates&tax_id=all&type=all&class=all&family=all&version=all), to get a curated dataset. However, there does not appear to be anything coming up for TET2 in the database.
  
  If your TET2 gene is what you want specifically, you can find [papers](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6442383/) that perform ChIP-seq and infer binding regions. I believe that [this Supp Table 3](https://genome.cshlp.org/content/suppl/2019/03/15/gr.239277.118.DC1/Supplemental_Table_S3.xlsx) contains information equivalent to a BED file for TET2.
  
  
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