Answers.Body: <p>Have you tried clicking on the &quot;Back to Traditional Results Page&quot; link in the top right corner? If you're expecting a different interface, that might help work out where to find the right information.</p>
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Answers.ContentLicense: CC BY-SA 4.0
Answers.CreationDate: 2021-06-19T08:52:12.260Z
Answers.LastActivityDate: 2021-06-19T09:04:50.910Z
Answers.LastEditDate: 2021-06-19T09:04:50.910Z
Answers.UserDisplayName: gringer
Body: <p>It used to be easy to download off a results page of a PSI-Blast from NCBI the PSSM (scorematrix). Now I cannot seem to find an <code>asn</code> file that is a scorematrix —<code>Download&gt;ASN.1</code> is the output of the search. Whereas before it was in &quot;format results&quot; IIRC.
  I was after this to check something in the PSSM viewer or do further cycles of PSI-Blast with different settings —the latter especially handy given that at present the exclude taxa checkbox is troublesome. Where is the option gone?
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Comments.ContentLicense: CC BY-SA 4.0
Comments.CreationDate: 2021-06-19T09:07:19.923Z
Comments.Text: Addendum: a blast search with only excluded taxa never used to glitched but now does, but adding `biota` taxa prevents it from glitching.
Comments.UserDisplayName: Matteo Ferla
Tags: <phylogenetics><psi-blast><pssm>
Title: Downloading PSSM file from NCBI PSI-Blast results after the UI update
ThreadText: # Downloading PSSM file from NCBI PSI-Blast results after the UI update
  
  (Asked by: username_0 on 2021-06-18)
  
  It used to be easy to download off a results page of a PSI-Blast from NCBI the PSSM (scorematrix). Now I cannot seem to find an `asn` file that is a scorematrix —`Download>ASN.1` is the output of the search. Whereas before it was in "format results" IIRC.
  I was after this to check something in the PSSM viewer or do further cycles of PSI-Blast with different settings —the latter especially handy given that at present the exclude taxa checkbox is troublesome. Where is the option gone?
  [![enter image description here](https://i.sstatic.net/gn3Ph.png)](https://i.sstatic.net/gn3Ph.png)
  
  **Tags:** phylogenetics, psi-blast, pssm
  
  > **Comments:**
  > **username_0**: Addendum: a blast search with only excluded taxa never used to glitched but now does, but adding `biota` taxa prevents it from glitching.  
  
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  ## 1 answers
  
  ### Answer by username_1 on 2021-06-19. Score: 1 | Accepted answer
  
  Have you tried clicking on the "Back to Traditional Results Page" link in the top right corner? If you're expecting a different interface, that might help work out where to find the right information.
  
  [![enter image description here](https://i.sstatic.net/ubpHt.png)](https://i.sstatic.net/ubpHt.png)
  
  
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