Answers.Body: <p>I've found the answer.</p>
  <p>I've aligned these genomes (gbk files) with Mauve Contig Mover, and then I exported the Gap File into a csv file. Then I used python pandas to analyze the region that is unique to each strand from the csv file.</p>
  
Answers.ContentLicense: CC BY-SA 4.0
Answers.CreationDate: 2021-12-13T04:48:44.023Z
Answers.LastActivityDate: 2021-12-13T06:44:49.227Z
Answers.LastEditDate: 2021-12-13T06:44:49.227Z
Answers.UserDisplayName: raysteven
Body: <p>I have two genomes with high similarity. But I found out that one genome has a longer sequence of about 200 kbp. I try to align the sequence with Mauve. How can I extract this unique 200 kbp?</p>
  
Comments.ContentLicense: CC BY-SA 4.0
Comments.CreationDate: 2021-12-02T11:33:05.547Z
Comments.Text: How is this region demarcated? Between certain features? A separate contig?
  How would you want the region identified for any such code to retrieve it?
Comments.UserDisplayName: Joe Healey
Tags: <phylogenetics><genome><mauve>
Title: Extracting Sequence Unique to a Certain Genome
ThreadText: # Extracting Sequence Unique to a Certain Genome
  
  (Asked by: username_0 on 2021-12-02)
  
  I have two genomes with high similarity. But I found out that one genome has a longer sequence of about 200 kbp. I try to align the sequence with Mauve. How can I extract this unique 200 kbp?
  
  **Tags:** phylogenetics, genome, mauve
  
  > **Comments:**
  > **username_1**: How is this region demarcated? Between certain features? A separate contig? How would you want the region identified for any such code to retrieve it?  
  
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  ## 1 answers
  
  ### Answer by username_0 on 2021-12-13. Score: 1
  
  I've found the answer.
  
  I've aligned these genomes (gbk files) with Mauve Contig Mover, and then I exported the Gap File into a csv file. Then I used python pandas to analyze the region that is unique to each strand from the csv file.
  
  
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