Answers.Body: <p>I presume you are looking for the recently sequenced WGS data rather than the genotype data? If so, the different files can be found here: <a href="ftp://ngs.sanger.ac.uk/production/hgdp/hgdp_wgs.20190516/" rel="nofollow noreferrer">ftp://ngs.sanger.ac.uk/production/hgdp/hgdp_wgs.20190516/</a></p>
  <p>Each chromsome has a seperate vcf file with a corresponding .tbi index file.</p>
  <p>The gvcfs can be found here: <a href="ftp://ngs.sanger.ac.uk/production/hgdp/hgdp_wgs.20190516/gVCFs/" rel="nofollow noreferrer">ftp://ngs.sanger.ac.uk/production/hgdp/hgdp_wgs.20190516/gVCFs/</a></p>
  <p>These files are more compressed and smaller in size than the regular vcfs.</p>
  
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Answers.CreationDate: 2020-07-29T11:11:31.973Z
Answers.Text: Fantastic, thanks so much!
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Answers.Text: No problem. If you feel like this has answered your question, you can close it by clicking 'accept answer'.
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Answers.Text: Sure thing. When you upvote my question ;-P
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Body: <p>I can't seem to find HGDP data in VCF format.</p>
  <p>Does anyone know where I can download it from?</p>
  <p>Perhaps there a Snakemake pipeline for calling VCFs from this data?</p>
  
Tags: <vcf><variant-calling><data-download><human-genome>
Title: Download or create VCF from Human Genome Diversity Project (HGDP)
ThreadText: # Download or create VCF from Human Genome Diversity Project (HGDP)
  
  (Asked by: username_0 on 2020-07-27)
  
  I can't seem to find HGDP data in VCF format.
  
  Does anyone know where I can download it from?
  
  Perhaps there a Snakemake pipeline for calling VCFs from this data?
  
  **Tags:** vcf, variant-calling, data-download, human-genome
  
  
  ---
  
  ## 1 answers
  
  ### Answer by username_1 on 2020-07-27. Score: 3 | Accepted answer
  
  I presume you are looking for the recently sequenced WGS data rather than the genotype data? If so, the different files can be found here: <ftp://ngs.sanger.ac.uk/production/hgdp/hgdp_wgs.20190516/>
  
  Each chromsome has a seperate vcf file with a corresponding .tbi index file.
  
  The gvcfs can be found here: <ftp://ngs.sanger.ac.uk/production/hgdp/hgdp_wgs.20190516/gVCFs/>
  
  These files are more compressed and smaller in size than the regular vcfs.
  
  > **Comments:**
  > **username_0**: Fantastic, thanks so much!  
  > **username_1**: No problem. If you feel like this has answered your question, you can close it by clicking 'accept answer'.  
  > **username_0**: Sure thing. When you upvote my question ;-P  
  
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