Answers.Body: <p>I ended up using option 4 and parsing the columns for "Synonym" and "Previous Symbol".</p>
  
  <p><a href="https://www.genenames.org/cgi-bin/genefamilies/set/471" rel="nofollow noreferrer">https://www.genenames.org/cgi-bin/genefamilies/set/471</a></p>
  
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Answers.CreationDate: 2018-04-30T18:07:31.693Z
Answers.LastActivityDate: 2018-04-30T18:07:31.693Z
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Body: <p>I want to convert names according to the "cluster of differentiation" nomenclature into accepted gene symbols. For example, CD3 should map to "CD3a;CD3b;CD3c;CD247" and "CD45RO" should map to "PTPRC". If the surface antigen isn't coded for by a gene, it should map to "" or something similar. </p>
  
  <p>I've seen <a href="https://bioinformatics.stackexchange.com/questions/2655/obtain-cd-cluster-of-differentiation-marker-expression-information">Obtain CD (cluster of differentiation) marker expression information</a>, but the Abcam table used there does not give the gene symbol -- it gives a list of alternate names. I've seen table 1 of <a href="http://www.jimmunol.org/content/195/10/4555" rel="nofollow noreferrer">this paper</a>, but it contains errors -- for example, TNFRSF11 should be TNFRSF11A. I could copy <a href="http://www.hcdm.org/index.php/molecule-information" rel="nofollow noreferrer">this table</a> by hand, or I could download <a href="https://www.genenames.org/cgi-bin/genefamilies/set/471" rel="nofollow noreferrer">this one</a>, though that's annoying because it doesn't have one row per CD. </p>
  
  <p>Is there a canonical (or just a convenient and reliable) way to do this?</p>
  
Tags: <public-databases>
Title: Convert CD (cluster of differentiation) into gene symbol
ThreadText: # Convert CD (cluster of differentiation) into gene symbol
  
  (Asked by: username_0 on 2018-04-30)
  
  I want to convert names according to the "cluster of differentiation" nomenclature into accepted gene symbols. For example, CD3 should map to "CD3a;CD3b;CD3c;CD247" and "CD45RO" should map to "PTPRC". If the surface antigen isn't coded for by a gene, it should map to "" or something similar.
  
  I've seen [Obtain CD (cluster of differentiation) marker expression information](https://bioinformatics.stackexchange.com/questions/2655/obtain-cd-cluster-of-differentiation-marker-expression-information), but the Abcam table used there does not give the gene symbol -- it gives a list of alternate names. I've seen table 1 of [this paper](http://www.jimmunol.org/content/195/10/4555), but it contains errors -- for example, TNFRSF11 should be TNFRSF11A. I could copy [this table](http://www.hcdm.org/index.php/molecule-information) by hand, or I could download [this one](https://www.genenames.org/cgi-bin/genefamilies/set/471), though that's annoying because it doesn't have one row per CD.
  
  Is there a canonical (or just a convenient and reliable) way to do this?
  
  **Tags:** public-databases
  
  
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  ## 1 answers
  
  ### Answer by username_0 on 2018-04-30. Score: 2
  
  I ended up using option 4 and parsing the columns for "Synonym" and "Previous Symbol".
  
  <https://www.genenames.org/cgi-bin/genefamilies/set/471>
  
  
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