Answers.Body: <p>use:
  Spectrum b, Red_white_blue</p>
  
Answers.ContentLicense: CC BY-SA 4.0
Answers.CreationDate: 2022-07-22T17:04:07.663Z
Answers.Text: It is not clear what this means.
Answers.UserDisplayName: Maximilian Press
Answers.ContentLicense: CC BY-SA 4.0
Answers.CreationDate: 2022-07-21T07:38:49.637Z
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Answers.UserDisplayName: user15807
Answers.Body: <p><em>Answer from @matteo-ferla, converted from <a href="https://bioinformatics.stackexchange.com/help/privileges/comment">comment</a>:</em></p>
  <p>They are stored as b-factors. This is well described in the <a href="https://pymolwiki.org/index.php/Selection_Algebra" rel="nofollow noreferrer">PyMol wiki</a>.</p>
  <p><em>[please edit to improve this answer, if possible]</em></p>
  
Answers.ContentLicense: CC BY-SA 4.0
Answers.CreationDate: 2022-07-21T22:36:25.177Z
Answers.LastActivityDate: 2022-07-21T22:36:25.177Z
Answers.UserDisplayName: gringer
Body: <p>I have downloaded a predicted structure from AlphaFold as a pdb file (<a href="https://alphafold.com/entry/O75376" rel="nofollow noreferrer">https://alphafold.com/entry/O75376</a>) and loaded it into Pymol (2.3.0). There is quite a large portion of the structure that was modelled with very low confidence (pLDDT &lt; 50). Is there a way to select these regions in the structure so that I can assign a different representation to them? Thank you.</p>
  
Tags: <protein-structure><pymol><structural-biology>
Title: Pymol: select low confidence regions from AlphaFold pdb file
ThreadText: # Pymol: select low confidence regions from AlphaFold pdb file
  
  (Asked by: username_0 on 2022-04-28)
  
  I have downloaded a predicted structure from AlphaFold as a pdb file (<https://alphafold.com/entry/O75376>) and loaded it into Pymol (2.3.0). There is quite a large portion of the structure that was modelled with very low confidence (pLDDT < 50). Is there a way to select these regions in the structure so that I can assign a different representation to them? Thank you.
  
  **Tags:** protein-structure, pymol, structural-biology
  
  
  ---
  
  ## 2 answers
  
  ### Answer by username_3 on 2022-07-21. Score: 2 | Accepted answer
  
  *Answer from @matteo-ferla, converted from [comment](https://bioinformatics.stackexchange.com/help/privileges/comment):*
  
  They are stored as b-factors. This is well described in the [PyMol wiki](https://pymolwiki.org/index.php/Selection_Algebra).
  
  *[please edit to improve this answer, if possible]*
  
  
  ---
  
  ### Answer by username_1 on 2022-07-21. Score: -1
  
  use:
  Spectrum b, Red\_white\_blue
  
  > **Comments:**
  > **username_2**: It is not clear what this means.  
  
  ---
  
  