Body: <p>How can I convert protein distance maps and sequences to pdb files?</p>
  <p>For the same problem, in the case of a model predicting the structure of a protein, such as AlphaFold, how do we convert the generated output tensor to a PDB file and visualize it?</p>
  
Comments.ContentLicense: CC BY-SA 4.0
Comments.CreationDate: 2022-03-07T16:21:50.800Z
Comments.Text: Please edit the question to limit it to a specific problem with enough detail to identify an adequate answer.
Comments.UserDisplayName: Community
Comments.ContentLicense: CC BY-SA 4.0
Comments.CreationDate: 2022-03-07T19:59:03.573Z
Comments.Text: It would be helpful to see what your outputs look like now. PDB files are supposedly provided as part of alphafold predictions (see github page: https://github.com/deepmind/alphafold#alphafold-output). PDB format described here: https://en.wikipedia.org/wiki/Protein_Data_Bank_(file_format)
Comments.UserDisplayName: Maximilian Press
Tags: <proteins><pdb><machine-learning><deep-learning>
Title: How can I convert protein distance maps and sequences to a pdb files?
ThreadText: # How can I convert protein distance maps and sequences to a pdb files?
  
  (Asked by: username_0 on 2022-03-07)
  
  How can I convert protein distance maps and sequences to pdb files?
  
  For the same problem, in the case of a model predicting the structure of a protein, such as AlphaFold, how do we convert the generated output tensor to a PDB file and visualize it?
  
  **Tags:** proteins, pdb, machine-learning, deep-learning
  
  > **Comments:**
  > **username_1**: Please edit the question to limit it to a specific problem with enough detail to identify an adequate answer.  
  > **username_2**: It would be helpful to see what your outputs look like now. PDB files are supposedly provided as part of alphafold predictions (see github page: https://github.com/deepmind/alphafold#alphafold-output). PDB format described here: https://en.wikipedia.org/wiki/Protein_Data_Bank_(file_format)  
  
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  ## 0 answers
  
  