Answers.Body: <p>EBI has an expression atlas, including mouse: <a href="https://www.ebi.ac.uk/gxa/experiments?species=mus+musculus" rel="nofollow noreferrer">https://www.ebi.ac.uk/gxa/experiments?species=mus+musculus</a></p>
  
  <p>If you click on one of the individual experiments you can download tables of TPM or RPKM per gene.</p>
  
  <p>There are currently about 1000 individual experiments in different tissues etc.</p>
  
Answers.ContentLicense: CC BY-SA 4.0
Answers.CreationDate: 2019-02-08T11:39:47.863Z
Answers.LastActivityDate: 2019-02-08T11:39:47.863Z
Answers.UserDisplayName: Jay Moore
Body: <p>Is there any RNAseq gene/transcript read count database for the mouse? I already know about <a href="https://amp.pharm.mssm.edu/archs4/" rel="nofollow noreferrer">ARCHS4</a>, looking for some other source.</p>
  
  <p>Thank you</p>
  
Comments.ContentLicense: CC BY-SA 4.0
Comments.CreationDate: 2019-02-07T20:03:36.260Z
Comments.Text: You can sometimes get counts from GEO, though that's probably not what you're looking for.
Comments.UserDisplayName: Devon Ryan
Tags: <rna-seq><reads><data-mining>
Title: RNA-seq gene/transcript read counts database for Mouse
ThreadText: # RNA-seq gene/transcript read counts database for Mouse
  
  (Asked by: username_0 on 2019-02-07)
  
  Is there any RNAseq gene/transcript read count database for the mouse? I already know about [ARCHS4](https://amp.pharm.mssm.edu/archs4/), looking for some other source.
  
  Thank you
  
  **Tags:** rna-seq, reads, data-mining
  
  > **Comments:**
  > **username_1**: You can sometimes get counts from GEO, though that's probably not what you're looking for.  
  
  ---
  
  ## 1 answers
  
  ### Answer by username_2 on 2019-02-08. Score: 2 | Accepted answer
  
  EBI has an expression atlas, including mouse: <https://www.ebi.ac.uk/gxa/experiments?species=mus+musculus>
  
  If you click on one of the individual experiments you can download tables of TPM or RPKM per gene.
  
  There are currently about 1000 individual experiments in different tissues etc.
  
  
  ---
  
  