Body: <p>i got a similarity score matrix by using CCREPE package on R. I would like to visualize the co-occurence by using the app CoNet from Cytoscape. Everytime i upload the .TSV matrix and .TSV p-values, i got an error.</p>
  <p>This is the similarity matrix:</p>
  <p><a href="https://i.sstatic.net/UDOUkXrE.png" rel="nofollow noreferrer"><img src="https://i.sstatic.net/UDOUkXrE.png" alt="enter image description here" /></a></p>
  <p>This is the p-value matrix:
  <a href="https://i.sstatic.net/8M28xwoT.png" rel="nofollow noreferrer"><img src="https://i.sstatic.net/8M28xwoT.png" alt="enter image description here" /></a></p>
  <p>This is how i upload the tho files in CoNet:
  <a href="https://i.sstatic.net/TMTAE2FJ.png" rel="nofollow noreferrer"><img src="https://i.sstatic.net/TMTAE2FJ.png" alt="enter image description here" /></a></p>
  <p>This is the error i get once i tap &quot;go&quot;:
  <a href="https://i.sstatic.net/cbG1V4gY.png" rel="nofollow noreferrer"><img src="https://i.sstatic.net/cbG1V4gY.png" alt="enter image description here" /></a></p>
  
Comments.ContentLicense: CC BY-SA 4.0
Comments.CreationDate: 2024-07-26T16:38:36.057Z
Comments.Text: Please clarify your specific problem or provide additional details to highlight exactly what you need. As it's currently written, it's hard to tell exactly what you're asking.
Comments.UserDisplayName: Community
Comments.ContentLicense: CC BY-SA 4.0
Comments.CreationDate: 2024-07-26T22:02:48.330Z
Comments.Text: Please show some of your input data. The first few lines of the .TSV matrix and .TSV p-values would be helpful.
Comments.UserDisplayName: gringer
Comments.ContentLicense: CC BY-SA 4.0
Comments.CreationDate: 2024-07-27T09:18:40.370Z
Comments.Text: thanks for your reply. I posted more pictures
Comments.UserDisplayName: user21020
Comments.ContentLicense: CC BY-SA 4.0
Comments.CreationDate: 2024-08-01T03:55:43.473Z
Comments.Text: My guess is that CoNet doesn't like NaN entries. Try changing those to 0 and see if it works.
Comments.UserDisplayName: Scooter Morris
Tags: <cytoscape>
Title: How to visualize Similarity score matrix with CoNet app of Cytoscape
ThreadText: # How to visualize Similarity score matrix with CoNet app of Cytoscape
  
  (Asked by: username_0 on 2024-07-26)
  
  i got a similarity score matrix by using CCREPE package on R. I would like to visualize the co-occurence by using the app CoNet from Cytoscape. Everytime i upload the .TSV matrix and .TSV p-values, i got an error.
  
  This is the similarity matrix:
  
  [![enter image description here](https://i.sstatic.net/UDOUkXrE.png)](https://i.sstatic.net/UDOUkXrE.png)
  
  This is the p-value matrix:
  [![enter image description here](https://i.sstatic.net/8M28xwoT.png)](https://i.sstatic.net/8M28xwoT.png)
  
  This is how i upload the tho files in CoNet:
  [![enter image description here](https://i.sstatic.net/TMTAE2FJ.png)](https://i.sstatic.net/TMTAE2FJ.png)
  
  This is the error i get once i tap "go":
  [![enter image description here](https://i.sstatic.net/cbG1V4gY.png)](https://i.sstatic.net/cbG1V4gY.png)
  
  **Tags:** cytoscape
  
  > **Comments:**
  > **username_1**: Please clarify your specific problem or provide additional details to highlight exactly what you need. As it's currently written, it's hard to tell exactly what you're asking.  
  > **username_2**: Please show some of your input data. The first few lines of the .TSV matrix and .TSV p-values would be helpful.  
  > **username_0**: thanks for your reply. I posted more pictures  
  > **username_3**: My guess is that CoNet doesn't like NaN entries. Try changing those to 0 and see if it works.  
  
  ---
  
  ## 0 answers
  
  