Answers.Body: <p>The Dockerfile is generated by galaxy-utils, so I'm not entirely sure what it looks like. However you should be able to generate such a &quot;mulled&quot; container as documented <a href="https://github.com/BioContainers/mulled" rel="nofollow noreferrer">here</a>. In short, something of the form:</p>
  <pre><code>mulled-build build 'bioconductor-csaw=someversion--somebuildnumber' 'someotherpackage=someversion--somebuildnumber' ...
  </code></pre>
  <p>That probably requires setting the CONDA_IMAGE environment variable. Bioconda currently sets that to <code>quay.io/dpryan79/mulled_container:latest</code>.</p>
  
Answers.ContentLicense: CC BY-SA 4.0
Answers.CreationDate: 2020-09-16T08:59:44.873Z
Answers.LastActivityDate: 2020-09-16T08:59:44.873Z
Answers.UserDisplayName: Devon Ryan
Body: <p>Bioconda packages have associated containers images. E.g. <code>bioconductor-csaw</code> has the image <code>quay.io/biocontainers/bioconductor-csaw</code>.</p>
  <p>I would like to customize the image, in particular, I would like to add rstudio.</p>
  <p>It is possible to get the Dockerfile associated to the image of a bioconda package?</p>
  <p>How do you suggest to proceed to customize the image?</p>
  
Tags: <rstudio><bioconda><docker>
Title: Get Dockerfile of a bioconda package
ThreadText: # Get Dockerfile of a bioconda package
  
  (Asked by: username_0 on 2020-09-16)
  
  Bioconda packages have associated containers images. E.g. `bioconductor-csaw` has the image `quay.io/biocontainers/bioconductor-csaw`.
  
  I would like to customize the image, in particular, I would like to add rstudio.
  
  It is possible to get the Dockerfile associated to the image of a bioconda package?
  
  How do you suggest to proceed to customize the image?
  
  **Tags:** rstudio, bioconda, docker
  
  
  ---
  
  ## 1 answers
  
  ### Answer by username_1 on 2020-09-16. Score: 1 | Accepted answer
  
  The Dockerfile is generated by galaxy-utils, so I'm not entirely sure what it looks like. However you should be able to generate such a "mulled" container as documented [here](https://github.com/BioContainers/mulled). In short, something of the form:
  
  ```
  mulled-build build 'bioconductor-csaw=someversion--somebuildnumber' 'someotherpackage=someversion--somebuildnumber' ...
  
  ```
  
  That probably requires setting the CONDA\_IMAGE environment variable. Bioconda currently sets that to `quay.io/dpryan79/mulled_container:latest`.
  
  
  ---
  
  