Answers.Body: <p><a href="https://warwick.ac.uk/fac/sci/moac/people/students/peter_cock/python/ramachandran/other/" rel="noreferrer">Here</a> is a page with several suggested methods. I agree that Rampage looks the best of the options, but it seems that it provides some <a href="https://warwick.ac.uk/fac/sci/moac/people/students/peter_cock/r/ramachandran/" rel="noreferrer">suggested workflows for drawing it in R</a> so that it is very customizable and you can probably get it to show any features you want if you're willing to customize a little.</p>
  
  <p>Here is a <a href="https://pypi.org/project/RamachanDraw/" rel="noreferrer">Python tool</a> for drawing Ramachandran plots.</p>
  
  <p>There are additionally <a href="http://services.mbi.ucla.edu/SAVES/Ramachandran/" rel="noreferrer">several</a> <a href="https://spdbv.vital-it.ch/rama.html" rel="noreferrer">other</a> <a href="https://swift.cmbi.umcn.nl/servers/html/ramaplot.html" rel="noreferrer">servers</a>/tools.</p>
  
Answers.ContentLicense: CC BY-SA 4.0
Answers.CreationDate: 2020-05-21T23:13:39.077Z
Answers.Text: Thanks, it certainly appears that Rampage isnt a good option right now
Answers.UserDisplayName: M__
Answers.ContentLicense: CC BY-SA 4.0
Answers.CreationDate: 2020-05-23T20:22:45.780Z
Answers.Text: Thanks, I will try using Rstudio then.
Answers.UserDisplayName: polonio210
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Answers.CreationDate: 2020-05-21T23:04:14.170Z
Answers.LastActivityDate: 2020-05-21T23:04:14.170Z
Answers.UserDisplayName: Maximilian Press
Body: <p>I am using <a href="http://mordred.bioc.cam.ac.uk/~rapper/rampage.php" rel="nofollow noreferrer">Rampage webserver</a> to obtain a Ramachandran plot. However, the server does not reveal any plot just values (favored, allowed, outlier regions).</p>
  
  <p>Can you recommend other similar web sites?</p>
  
Comments.ContentLicense: CC BY-SA 4.0
Comments.CreationDate: 2020-05-20T23:43:35.890Z
Comments.Text: Hi @polonio,  alot will understand a Ramachandran plot, I don't know anyone here who knows the webserver in question. Please either contact teh developer directly or generalise your question, by posing the problem such that it could be solved using an alternative approach, e.g. via R.
Comments.UserDisplayName: M__
Comments.ContentLicense: CC BY-SA 4.0
Comments.CreationDate: 2020-05-21T08:52:07.097Z
Comments.Text: I must disagree, Rampage, albeit old is the most used site for this.
Comments.UserDisplayName: Matteo Ferla
Comments.ContentLicense: CC BY-SA 4.0
Comments.CreationDate: 2020-05-21T08:55:42.270Z
Comments.Text: Yes, Rampage seems to be not working properly atm and I can confirm that it did show plots a few years back. Mind you the quality was not great —no plotly interactive charts etc.  @polonio210 Would you mind dropping the authors an email?
Comments.UserDisplayName: Matteo Ferla
Comments.ContentLicense: CC BY-SA 4.0
Comments.CreationDate: 2020-05-21T17:50:57.807Z
Comments.Text: Thanks guys, I have seen recent publications and actually they work reflect Ramachandran Plots from Rampage. But, I do not know when they got them.
Comments.UserDisplayName: polonio210
Comments.ContentLicense: CC BY-SA 4.0
Comments.CreationDate: 2020-05-21T17:52:50.950Z
Comments.Text: @MatteoFerla Yes, I will send an e-mail to them cuz the ramachandran plots of that webserver are really proffesional.
Comments.UserDisplayName: polonio210
Comments.ContentLicense: CC BY-SA 4.0
Comments.CreationDate: 2020-05-25T14:08:11.587Z
Comments.Text: I guess the post would use a bit of clarity (what is the input, desirted output and the actualy output), but I do think it's fine here.
Comments.UserDisplayName: Kamil S Jaron
Tags: <3d-structure><validation>
Title: Where can I visualize Ramachandran plot?
ThreadText: # Where can I visualize Ramachandran plot?
  
  (Asked by: username_0 on 2020-05-20)
  
  I am using [Rampage webserver](http://mordred.bioc.cam.ac.uk/~rapper/rampage.php) to obtain a Ramachandran plot. However, the server does not reveal any plot just values (favored, allowed, outlier regions).
  
  Can you recommend other similar web sites?
  
  **Tags:** 3d-structure, validation
  
  > **Comments:**
  > **username_1**: Hi @polonio,  alot will understand a Ramachandran plot, I don't know anyone here who knows the webserver in question. Please either contact teh developer directly or generalise your question, by posing the problem such that it could be solved using an alternative approach, e.g. via R.  
  > **username_2**: I must disagree, Rampage, albeit old is the most used site for this.  
  > **username_2**: Yes, Rampage seems to be not working properly atm and I can confirm that it did show plots a few years back. Mind you the quality was not great —no plotly interactive charts etc.  @username_0 Would you mind dropping the authors an email?  
  > **username_0**: Thanks guys, I have seen recent publications and actually they work reflect Ramachandran Plots from Rampage. But, I do not know when they got them.  
  > **username_0**: @username_2 Yes, I will send an e-mail to them cuz the ramachandran plots of that webserver are really proffesional.  
  > **username_3**: I guess the post would use a bit of clarity (what is the input, desirted output and the actualy output), but I do think it's fine here.  
  
  ---
  
  ## 1 answers
  
  ### Answer by username_4 on 2020-05-21. Score: 4 | Accepted answer
  
  [Here](https://warwick.ac.uk/fac/sci/moac/people/students/peter_cock/python/ramachandran/other/) is a page with several suggested methods. I agree that Rampage looks the best of the options, but it seems that it provides some [suggested workflows for drawing it in R](https://warwick.ac.uk/fac/sci/moac/people/students/peter_cock/r/ramachandran/) so that it is very customizable and you can probably get it to show any features you want if you're willing to customize a little.
  
  Here is a [Python tool](https://pypi.org/project/RamachanDraw/) for drawing Ramachandran plots.
  
  There are additionally [several](http://services.mbi.ucla.edu/SAVES/Ramachandran/) [other](https://spdbv.vital-it.ch/rama.html) [servers](https://swift.cmbi.umcn.nl/servers/html/ramaplot.html)/tools.
  
  > **Comments:**
  > **username_1**: Thanks, it certainly appears that Rampage isnt a good option right now  
  > **username_0**: Thanks, I will try using Rstudio then.  
  
  ---
  
  