Answers.Body: <p>This can be a good starting point: <code>table(your_seurat_object@meta.data$the_column_that_has_the_labels_of_interest)</code></p>
  <p>Basically you will be counting the number of rows (each single cell is a row) in the <code>meta.data</code> slot of your Seurat object for each level of your column of interest (for example cell type annotations).</p>
  
Answers.ContentLicense: CC BY-SA 4.0
Answers.CreationDate: 2023-07-06T12:51:34.640Z
Answers.LastActivityDate: 2023-07-06T12:51:34.640Z
Answers.UserDisplayName: haci
Body: <p><a href="https://i.sstatic.net/2W5L6.png" rel="nofollow noreferrer"><img src="https://i.sstatic.net/2W5L6.png" alt="enter image description here" /></a></p>
  <p>I tried to quantify the number of cells of Fzd9+ Macrophage.</p>
  <p>how can I know the cell count?</p>
  <p>thank you</p>
  
Comments.ContentLicense: CC BY-SA 4.0
Comments.CreationDate: 2023-07-06T12:29:35.660Z
Comments.Text: Please clarify your specific problem or provide additional details to highlight exactly what you need. As it's currently written, it's hard to tell exactly what you're asking.
Comments.UserDisplayName: Community
Comments.ContentLicense: CC BY-SA 4.0
Comments.CreationDate: 2023-07-08T07:39:19.637Z
Comments.Text: Does @haci's response answer your question? If so please mark it as "accepted". The question appears to contain very little detail and is easy for a misunderstanding to occur in these situations.
Comments.UserDisplayName: M__
Tags: <rna-seq><scrnaseq>
Title: is it possible to count cell in Violin plot in seurat?
ThreadText: # is it possible to count cell in Violin plot in seurat?
  
  (Asked by: username_0 on 2023-07-06)
  
  [![enter image description here](https://i.sstatic.net/2W5L6.png)](https://i.sstatic.net/2W5L6.png)
  
  I tried to quantify the number of cells of Fzd9+ Macrophage.
  
  how can I know the cell count?
  
  thank you
  
  **Tags:** rna-seq, scrnaseq
  
  > **Comments:**
  > **username_1**: Please clarify your specific problem or provide additional details to highlight exactly what you need. As it's currently written, it's hard to tell exactly what you're asking.  
  > **username_2**: Does @username_3's response answer your question? If so please mark it as "accepted". The question appears to contain very little detail and is easy for a misunderstanding to occur in these situations.  
  
  ---
  
  ## 1 answers
  
  ### Answer by username_3 on 2023-07-06. Score: 3
  
  This can be a good starting point: `table(your_seurat_object@meta.data$the_column_that_has_the_labels_of_interest)`
  
  Basically you will be counting the number of rows (each single cell is a row) in the `meta.data` slot of your Seurat object for each level of your column of interest (for example cell type annotations).
  
  
  ---
  
  