Answers.Body: <p>Sulfur atoms are shown in yellow.</p>
  
  <p>The molecular viewer that you use is JSMol (JMol ported to the web).</p>
  
  <p>Atoms are colored by element: grey C, blue N, red O and yellow S.<br>
  If you wonder how other atoms would be colored, see JMol's <a href="http://jmol.sourceforge.net/jscolors/" rel="noreferrer">Default element colors, by periodic table</a>.</p>
  
Answers.ContentLicense: CC BY-SA 4.0
Answers.CreationDate: 2020-03-09T11:21:06.023Z
Answers.Text: Here's the direct link: https://www.viprbrc.org/brc/structureOperation.spg?accession=1P9S&decorator=corona&context=1583712525175
Answers.UserDisplayName: Andy
Answers.ContentLicense: CC BY-SA 4.0
Answers.CreationDate: 2020-03-09T11:54:22.390Z
Answers.Text: Another question I had was this: https://bioinformatics.stackexchange.com/questions/11612/are-there-any-sulfur-dioxide-molecules-in-this-structure Thanks
Answers.UserDisplayName: Andy
Answers.ContentLicense: CC BY-SA 4.0
Answers.CreationDate: 2020-03-09T12:07:29.877Z
Answers.Text: Looks like they're using the common [CPK method of colouring](https://en.wikipedia.org/wiki/CPK_coloring), it's not unique for J(S)Mol.
Answers.UserDisplayName: Mast
Answers.ContentLicense: CC BY-SA 4.0
Answers.CreationDate: 2020-03-09T08:07:59.933Z
Answers.LastActivityDate: 2020-03-09T08:07:59.933Z
Answers.UserDisplayName: marcin
Body: <p>What does the yellow mean in this image of a SARS (coronavirus) protease from the Virus Pathogen resource database? It's from <a href="https://www.viprbrc.org/brc/" rel="nofollow noreferrer">https://www.viprbrc.org/brc/</a></p>
  <p><a href="https://i.sstatic.net/nE84E.jpg" rel="nofollow noreferrer"><img src="https://i.sstatic.net/nE84E.jpg" alt="It's from https://www.viprbrc.org/brc/" /></a></p>
  
Tags: <proteins><protein-structure><covid-19><sars-cov-2><molecular-genetics>
Title: What does the yellow mean in this image from Virus Pathogen Resource?
ThreadText: # What does the yellow mean in this image from Virus Pathogen Resource?
  
  (Asked by: username_0 on 2020-03-09)
  
  What does the yellow mean in this image of a SARS (coronavirus) protease from the Virus Pathogen resource database? It's from <https://www.viprbrc.org/brc/>
  
  [![It's from https://www.viprbrc.org/brc/](https://i.sstatic.net/nE84E.jpg)](https://i.sstatic.net/nE84E.jpg)
  
  **Tags:** proteins, protein-structure, covid-19, sars-cov-2, molecular-genetics
  
  
  ---
  
  ## 1 answers
  
  ### Answer by username_1 on 2020-03-09. Score: 7 | Accepted answer
  
  Sulfur atoms are shown in yellow.
  
  The molecular viewer that you use is JSMol (JMol ported to the web).
  
  Atoms are colored by element: grey C, blue N, red O and yellow S.  
  If you wonder how other atoms would be colored, see JMol's [Default element colors, by periodic table](http://jmol.sourceforge.net/jscolors/).
  
  > **Comments:**
  > **username_0**: Here's the direct link: https://www.viprbrc.org/brc/structureOperation.spg?accession=1P9S&decorator=corona&context=1583712525175  
  > **username_0**: Another question I had was this: https://bioinformatics.stackexchange.com/questions/11612/are-there-any-sulfur-dioxide-molecules-in-this-structure Thanks  
  > **username_2**: Looks like they're using the common [CPK method of colouring](https://en.wikipedia.org/wiki/CPK_coloring), it's not unique for J(S)Mol.  
  
  ---
  
  