Answers.Body: <p>Install it via anaconda/conda either,</p>
  <pre><code>conda install -c bioconda vcf2maf
  conda install -c bioconda/label/cf201901 vcf2maf
  </code></pre>
  <p>I would be surprised if that installation fails. A possible issue is Perl version and system version.</p>
  
Answers.ContentLicense: CC BY-SA 4.0
Answers.CreationDate: 2022-02-14T20:34:35.380Z
Answers.Text: Thanks! I think that works!
Answers.UserDisplayName: Scott XU
Answers.ContentLicense: CC BY-SA 4.0
Answers.CreationDate: 2022-02-14T20:46:39.437Z
Answers.Text: Cool, please remember to 'accept' and if possible upvote
Answers.UserDisplayName: M__
Answers.ContentLicense: CC BY-SA 4.0
Answers.CreationDate: 2022-02-14T20:31:07.340Z
Answers.LastActivityDate: 2022-02-14T20:31:07.340Z
Answers.UserDisplayName: M__
Body: <p>I tried to install <code>vcf2maf</code> following this tutorial from GitHub: <a href="https://github.com/mskcc/vcf2maf" rel="nofollow noreferrer">https://github.com/mskcc/vcf2maf</a>.</p>
  <p>I get a repeat error when I try to test out vcf2maf using the code:</p>
  <pre><code>perl vcf2maf.pl --input-vcf tests/test.vcf --output-maf tests/test.vep.maf
  </code></pre>
  <p>The error message looks like this:</p>
  <pre><code>'''STATUS: Running VEP and writing to: tests/test.vep.vcf
  ERROR: Cannot find VEP script under: /Users/user/miniconda3/bin'''
  </code></pre>
  <p>Basically I followed every steps provided on the tutorial.
  Does anyone could help me find out what is going wrong?</p>
  <p>I am working on macOS Monterey 12.2.1 with an Intel Core i5 processor.</p>
  
Comments.ContentLicense: CC BY-SA 4.0
Comments.CreationDate: 2022-02-14T20:28:25.017Z
Comments.Text: Could you kindly provide details of your hardware and system?
Comments.UserDisplayName: M__
Comments.ContentLicense: CC BY-SA 4.0
Comments.CreationDate: 2022-06-09T02:06:30.207Z
Comments.Text: I have the same problem.
  I tried conda installation as indicated, however, the error is not solved.
  Perl version is v5.36.0.
Comments.UserDisplayName: user15601
Tags: <vcf><maf>
Title: Error in installing vcf2maf
ThreadText: # Error in installing vcf2maf
  
  (Asked by: username_0 on 2022-02-14)
  
  I tried to install `vcf2maf` following this tutorial from GitHub: <https://github.com/mskcc/vcf2maf>.
  
  I get a repeat error when I try to test out vcf2maf using the code:
  
  ```
  perl vcf2maf.pl --input-vcf tests/test.vcf --output-maf tests/test.vep.maf
  
  ```
  
  The error message looks like this:
  
  ```
  '''STATUS: Running VEP and writing to: tests/test.vep.vcf
  ERROR: Cannot find VEP script under: /Users/user/miniconda3/bin'''
  
  ```
  
  Basically I followed every steps provided on the tutorial.
  Does anyone could help me find out what is going wrong?
  
  I am working on macOS Monterey 12.2.1 with an Intel Core i5 processor.
  
  **Tags:** vcf, maf
  
  > **Comments:**
  > **username_1**: Could you kindly provide details of your hardware and system?  
  > **username_2**: I have the same problem. I tried conda installation as indicated, however, the error is not solved. Perl version is v5.36.0.  
  
  ---
  
  ## 1 answers
  
  ### Answer by username_1 on 2022-02-14. Score: 1 | Accepted answer
  
  Install it via anaconda/conda either,
  
  ```
  conda install -c bioconda vcf2maf
  conda install -c bioconda/label/cf201901 vcf2maf
  
  ```
  
  I would be surprised if that installation fails. A possible issue is Perl version and system version.
  
  > **Comments:**
  > **username_0**: Thanks! I think that works!  
  > **username_1**: Cool, please remember to 'accept' and if possible upvote  
  
  ---
  
  