Answers.Body: <p>you should not move nextflow within <code>~/master_of_pores/NanoPreProcess/bin</code> .
  Just add nextflow in your path.</p>
  <pre><code>export PATH=$PATH:where_is_your_nf_executable
  </code></pre>
  <p>Feel free to open an issue on github if you need more help.</p>
  
Answers.ContentLicense: CC BY-SA 4.0
Answers.CreationDate: 2020-08-19T10:48:30.693Z
Answers.LastActivityDate: 2020-08-19T15:59:28.483Z
Answers.LastEditDate: 2020-08-19T15:59:28.483Z
Answers.UserDisplayName: Luca Cozzuto
Body: <p>I'm bit of a newbie with ONT analyses and am having some trouble with the Master Of Pores installation instructions (<a href="https://biocorecrg.github.io/master_of_pores/install.html" rel="nofollow noreferrer">https://biocorecrg.github.io/master_of_pores/install.html</a>). I've managed to install nextflow, cloned the repository and have downloaded albacore and guppy. But when I run the pipeline below, i get an error saying
  nextflow: command not found. Any help would be most appreciated.</p>
  <pre><code>curl https://get.nextflow.io | bash
  mv nextflow ~/master_of_pores/NanoPreProcess/bin
  nextflow run nanopreprocess.nf
  </code></pre>
  
Tags: <nanopore><software-installation><nextflow>
Title: Master of Pores Installation Mac OS Mojave 10.14
ThreadText: # Master of Pores Installation Mac OS Mojave 10.14
  
  (Asked by: username_0 on 2020-08-18)
  
  I'm bit of a newbie with ONT analyses and am having some trouble with the Master Of Pores installation instructions (<https://biocorecrg.github.io/master_of_pores/install.html>). I've managed to install nextflow, cloned the repository and have downloaded albacore and guppy. But when I run the pipeline below, i get an error saying
  nextflow: command not found. Any help would be most appreciated.
  
  ```
  curl https://get.nextflow.io | bash
  mv nextflow ~/master_of_pores/NanoPreProcess/bin
  nextflow run nanopreprocess.nf
  
  ```
  
  **Tags:** nanopore, software-installation, nextflow
  
  
  ---
  
  ## 1 answers
  
  ### Answer by username_1 on 2020-08-19. Score: 3
  
  you should not move nextflow within `~/master_of_pores/NanoPreProcess/bin` .
  Just add nextflow in your path.
  
  ```
  export PATH=$PATH:where_is_your_nf_executable
  
  ```
  
  Feel free to open an issue on github if you need more help.
  
  
  ---
  
  