Answers.Body: <p><a href="http://proteowizard.sourceforge.net/" rel="nofollow noreferrer"><code>ProteoWizard</code></a> offers this functionality:</p>
  
  <pre><code>msconvert your_mzXML_file --mzML
  </code></pre>
  
  <p><code>FileConverter</code> of <code>OpenMS</code> (I believe using the integrated ProteoWizard) also does <a href="https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/latest/html/TOPP_FileConverter.html" rel="nofollow noreferrer">this</a>.</p>
  
Answers.ContentLicense: CC BY-SA 4.0
Answers.CreationDate: 2019-11-17T12:14:13.250Z
Answers.LastActivityDate: 2019-11-17T12:22:16.613Z
Answers.LastEditDate: 2019-11-17T12:22:16.613Z
Answers.UserDisplayName: haci
Body: <p>How to convert mzXML to mzML format (mass spectrometry files) preferably under Linux and/or Python?</p>
  
Tags: <python><linux>
Title: How to convert mzXML to mzML format (mass spectrometry files)?
ThreadText: # How to convert mzXML to mzML format (mass spectrometry files)?
  
  (Asked by: username_0 on 2019-11-15)
  
  How to convert mzXML to mzML format (mass spectrometry files) preferably under Linux and/or Python?
  
  **Tags:** python, linux
  
  
  ---
  
  ## 1 answers
  
  ### Answer by username_1 on 2019-11-17. Score: 4 | Accepted answer
  
  [`ProteoWizard`](http://proteowizard.sourceforge.net/) offers this functionality:
  
  ```
  msconvert your_mzXML_file --mzML
  
  ```
  
  `FileConverter` of `OpenMS` (I believe using the integrated ProteoWizard) also does [this](https://abibuilder.informatik.uni-tuebingen.de/archive/openms/Documentation/release/latest/html/TOPP_FileConverter.html).
  
  
  ---
  
  