Body: <p>older releases of PDB used to specify DSSP as the 2ary structure assignment algorithm used in PDB, right now no algorithm is explicitly stated. Where can I find a reference for it in the database?</p>
  
Comments.ContentLicense: CC BY-SA 4.0
Comments.CreationDate: 2023-03-11T16:20:41.370Z
Comments.Text: Please clarify your specific problem or provide additional details to highlight exactly what you need. As it's currently written, it's hard to tell exactly what you're asking.
Comments.UserDisplayName: Community
Comments.ContentLicense: CC BY-SA 4.0
Comments.CreationDate: 2023-03-19T21:37:54.043Z
Comments.Text: Does the PDB assign the secondary structure tags, or just validate the one uploaded in the repository ??
Comments.UserDisplayName: pippo1980
Comments.ContentLicense: CC BY-SA 4.0
Comments.CreationDate: 2023-03-19T21:51:00.880Z
Comments.Text: DSSP 4.0 ?? https://github.com/PDB-REDO/dssp is used in PDB-redo
Comments.UserDisplayName: pippo1980
Comments.ContentLicense: CC BY-SA 4.0
Comments.CreationDate: 2023-03-19T21:51:19.800Z
Comments.Text: cant find any reference tough
Comments.UserDisplayName: pippo1980
Tags: <pdb><secondary-structure>
Title: which secondary structure assignment algorithm is used by PDB?
ThreadText: # which secondary structure assignment algorithm is used by PDB?
  
  (Asked by: username_0 on 2023-03-11)
  
  older releases of PDB used to specify DSSP as the 2ary structure assignment algorithm used in PDB, right now no algorithm is explicitly stated. Where can I find a reference for it in the database?
  
  **Tags:** pdb, secondary-structure
  
  > **Comments:**
  > **username_1**: Please clarify your specific problem or provide additional details to highlight exactly what you need. As it's currently written, it's hard to tell exactly what you're asking.  
  > **username_2**: Does the PDB assign the secondary structure tags, or just validate the one uploaded in the repository ??  
  > **username_2**: DSSP 4.0 ?? https://github.com/PDB-REDO/dssp is used in PDB-redo  
  > **username_2**: cant find any reference tough  
  
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  ## 0 answers
  
  