Answers.Body: <p>See openSNP here:</p>
  <p><a href="https://opensnp.org/" rel="nofollow noreferrer">https://opensnp.org/</a></p>
  <p>It is a web site for people to upload their own genetic datasets, providing freely-accessible public data with annotated phenotypes.</p>
  <blockquote>
  <p>openSNP allows customers of direct-to-customer genetic tests to publish their test results, find others with similar genetic variations, learn more about their results by getting the latest primary literature on their variations, and help scientists find new associations.</p>
  </blockquote>
  <p>The large collaborative research genetic data projects typically have very strict access constraints due to the realisation that genetic data is personally-identifiable data, and the expectation of anonymity. That means there's a low likelihood that a large research project will make their phenotype + genotype data publicly available.</p>
  
Answers.ContentLicense: CC BY-SA 4.0
Answers.CreationDate: 2021-11-29T22:40:14.653Z
Answers.LastActivityDate: 2021-11-29T22:45:44.770Z
Answers.LastEditDate: 2021-11-29T22:45:44.770Z
Answers.UserDisplayName: gringer
Body: <p>I'm looking for publicly available genotype data (eg. 1000 Genomes or HapMap) that also has associated phenotypes (any traits).  I'm wanting to use it as a test run for a GWAS pipeline. Does anyone know if this exists anywhere?</p>
  
Tags: <gwas><plink>
Title: Publicly available genotype / phenotype dataset?
ThreadText: # Publicly available genotype / phenotype dataset?
  
  (Asked by: username_0 on 2021-11-29)
  
  I'm looking for publicly available genotype data (eg. 1000 Genomes or HapMap) that also has associated phenotypes (any traits). I'm wanting to use it as a test run for a GWAS pipeline. Does anyone know if this exists anywhere?
  
  **Tags:** gwas, plink
  
  
  ---
  
  ## 1 answers
  
  ### Answer by username_1 on 2021-11-29. Score: 1
  
  See openSNP here:
  
  <https://opensnp.org/>
  
  It is a web site for people to upload their own genetic datasets, providing freely-accessible public data with annotated phenotypes.
  
  > openSNP allows customers of direct-to-customer genetic tests to publish their test results, find others with similar genetic variations, learn more about their results by getting the latest primary literature on their variations, and help scientists find new associations.
  
  The large collaborative research genetic data projects typically have very strict access constraints due to the realisation that genetic data is personally-identifiable data, and the expectation of anonymity. That means there's a low likelihood that a large research project will make their phenotype + genotype data publicly available.
  
  
  ---
  
  