Body: <p>Does anyone know of a Ramachandran plot server (URL please) that allows you to display, for example, just the leucine residues in a protein structure rather than displaying all the amino acids in the pdb file? Thanks!</p>
  <p>Paul</p>
  
Comments.ContentLicense: CC BY-SA 4.0
Comments.CreationDate: 2023-10-01T12:51:26.923Z
Comments.Text: Please clarify your specific problem or provide additional details to highlight exactly what you need. As it's currently written, it's hard to tell exactly what you're asking.
Comments.UserDisplayName: Community
Comments.ContentLicense: CC BY-SA 4.0
Comments.CreationDate: 2023-10-02T16:44:42.770Z
Comments.Text: https://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/ramachandran.html  : Usage: ramachandran [ assign ]  atom-spec
  The ramachandran command shows the distribution of peptide φ,ψ angles (a Ramachandran plot) for each specified model that contains protein. It is the command-line implementation of the Ramachandran plot function in the Model Panel. A separate plot will be generated for each protein-containing model with any atom in atom-spec, and the plot for a model will contain all of its peptide φ,ψ angles regardless of which atoms were specified.
Comments.UserDisplayName: pippo1980
Tags: <pdb>
Title: Ramachandran Plot for specific amino acids in a pdb file
ThreadText: # Ramachandran Plot for specific amino acids in a pdb file
  
  (Asked by: username_0 on 2023-10-01)
  
  Does anyone know of a Ramachandran plot server (URL please) that allows you to display, for example, just the leucine residues in a protein structure rather than displaying all the amino acids in the pdb file? Thanks!
  
  username_0
  
  **Tags:** pdb
  
  > **Comments:**
  > **username_1**: Please clarify your specific problem or provide additional details to highlight exactly what you need. As it's currently written, it's hard to tell exactly what you're asking.  
  > **username_2**: https://www.cgl.ucsf.edu/chimera/docs/UsersGuide/midas/ramachandran.html  : Usage: ramachandran [ assign ]  atom-spec The ramachandran command shows the distribution of peptide φ,ψ angles (a Ramachandran plot) for each specified model that contains protein. It is the command-line implementation of the Ramachandran plot function in the Model Panel. A separate plot will be generated for each protein-containing model with any atom in atom-spec, and the plot for a model will contain all of its peptide φ,ψ angles regardless of which atoms were specified.  
  
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  ## 0 answers
  
  