Answers.Body: <p>I am not sure if there are preprocessed datasets available, however, <a href="https://www.kallistobus.tools/velocity_tutorial.html" rel="nofollow noreferrer">Kallisto + Bustools</a> was designed specifically for the rapid quantification of spliced and unspliced transcripts. </p>
  
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Answers.CreationDate: 2020-01-14T19:51:46.543Z
Answers.Text: I hear there's an even easier pipeline/container in the works that automates Kallisto + Bustools
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Answers.CreationDate: 2020-01-14T03:45:55.333Z
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Body: <p>Before I do this myself...</p>
  
  <p>Is there any compiled batch-corrected dataset of the major scRNA-seq atlases (Mouse Cell Atlas, Mouse Organogenesis Atlas, Mouse Gastrulation Atlas, Tabula Muris, Tabula Muris Senis, etc.) with processed spliced AND unspliced count matrices?</p>
  
  <p>I would be surprised if there is, but in the event there isn't, are there new pipelines in development that will make processing of raw data easier for studying RNA velocity?</p>
  
Tags: <r><python><scrnaseq>
Title: Processed spliced and unspliced count matrices for existing scRNA-seq atlases
ThreadText: # Processed spliced and unspliced count matrices for existing scRNA-seq atlases
  
  (Asked by: username_0 on 2020-01-13)
  
  Before I do this myself...
  
  Is there any compiled batch-corrected dataset of the major scRNA-seq atlases (Mouse Cell Atlas, Mouse Organogenesis Atlas, Mouse Gastrulation Atlas, Tabula Muris, Tabula Muris Senis, etc.) with processed spliced AND unspliced count matrices?
  
  I would be surprised if there is, but in the event there isn't, are there new pipelines in development that will make processing of raw data easier for studying RNA velocity?
  
  **Tags:** r, python, scrnaseq
  
  
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  ## 1 answers
  
  ### Answer by username_1 on 2020-01-14. Score: 1 | Accepted answer
  
  I am not sure if there are preprocessed datasets available, however, [Kallisto + Bustools](https://www.kallistobus.tools/velocity_tutorial.html) was designed specifically for the rapid quantification of spliced and unspliced transcripts.
  
  > **Comments:**
  > **username_0**: I hear there's an even easier pipeline/container in the works that automates Kallisto + Bustools  
  
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