Answers.Body: <p>Try <a href="https://portals.broadinstitute.org/ccle/data/browseData?conversationPropagation=begin" rel="nofollow noreferrer">in this section</a> of <a href="https://portals.broadinstitute.org/ccle/home" rel="nofollow noreferrer">Cancer Cell Line Encyclopedia</a>. It has expression data for a lot of cancer cell lines. I have tried few times and found all cell lines I wanted, except HeLa. You just have to select mRNA expression data and download the file you prefer (raw data, gene-centric, etc.)</p>
  
Answers.ContentLicense: CC BY-SA 3.0
Answers.CreationDate: 2017-06-16T12:30:32.550Z
Answers.LastActivityDate: 2017-06-16T12:30:32.550Z
Answers.UserDisplayName: jxx_fa
Answers.Body: <p>Try the <a href="https://www.ncbi.nlm.nih.gov/geo/" rel="noreferrer">Gene Expression Omnibus</a> - it looks like they have some datasets.</p>
  
Answers.ContentLicense: CC BY-SA 3.0
Answers.CreationDate: 2017-06-19T11:05:59.073Z
Answers.Text: @JSneathThompson Consider marking the answer as accepted if it seems to be the best working solution for you.
Answers.UserDisplayName: bli
Answers.ContentLicense: CC BY-SA 3.0
Answers.CreationDate: 2017-06-16T11:59:37.793Z
Answers.LastActivityDate: 2017-06-16T11:59:37.793Z
Answers.UserDisplayName: Kristoffer Vitting-Seerup
Body: <p>I have two cancer cell lines (OCI-Ly18 &amp; riva) that I want to find gene expression data for, but I'm not aware of many gene expression databases that allow searching by cell-line without searching by gene.</p>
  
  <p>I tried <a href="https://genevestigator.com" rel="nofollow noreferrer">Genevestigator</a> on the recommendation of this <a href="https://www.researchgate.net/post/Is_there_a_database_to_find_out_which_genes_are_expressed_in_which_cell_lines" rel="nofollow noreferrer">thread</a>
  but found no data on either cell line.</p>
  
  <p>What would be the best way to find gene expression data for these cell lines?</p>
  
Tags: <database><cancer><differential-expression><cell-line>
Title: Searching for gene expression data by cell line
ThreadText: # Searching for gene expression data by cell line
  
  (Asked by: username_0 on 2017-06-16)
  
  I have two cancer cell lines (OCI-Ly18 & riva) that I want to find gene expression data for, but I'm not aware of many gene expression databases that allow searching by cell-line without searching by gene.
  
  I tried [Genevestigator](https://genevestigator.com) on the recommendation of this [thread](https://www.researchgate.net/post/Is_there_a_database_to_find_out_which_genes_are_expressed_in_which_cell_lines)
  but found no data on either cell line.
  
  What would be the best way to find gene expression data for these cell lines?
  
  **Tags:** database, cancer, differential-expression, cell-line
  
  
  ---
  
  ## 2 answers
  
  ### Answer by username_2 on 2017-06-16. Score: 5 | Accepted answer
  
  Try the [Gene Expression Omnibus](https://www.ncbi.nlm.nih.gov/geo/) - it looks like they have some datasets.
  
  > **Comments:**
  > **username_3**: @username_0 Consider marking the answer as accepted if it seems to be the best working solution for you.  
  
  ---
  
  ### Answer by username_1 on 2017-06-16. Score: 0
  
  Try [in this section](https://portals.broadinstitute.org/ccle/data/browseData?conversationPropagation=begin) of [Cancer Cell Line Encyclopedia](https://portals.broadinstitute.org/ccle/home). It has expression data for a lot of cancer cell lines. I have tried few times and found all cell lines I wanted, except HeLa. You just have to select mRNA expression data and download the file you prefer (raw data, gene-centric, etc.)
  
  
  ---
  
  