Answers.Body: <p>Do you mean this (a product of the BRCA Challenge project):</p>
  <blockquote>
  <p><a href="https://brcaexchange.org/" rel="nofollow noreferrer">https://brcaexchange.org/</a></p>
  </blockquote>
  <p><a href="https://i.sstatic.net/S08iv.png" rel="nofollow noreferrer"><img src="https://i.sstatic.net/S08iv.png" alt="enter image description here" /></a></p>
  
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Answers.CreationDate: 2022-06-05T20:23:35.080Z
Answers.Text: yes it helps thank you
Answers.UserDisplayName: Maryem Life
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Answers.Text: in addition,  Maryem,  • the following may need to note • `To gain biological insights, we frequently associate mutational signatures with factors such as driver mutations, germ line variation, epigenetic modifications, and environmental or therapeutic exposures. However, these remain associations until causation is proven.`
Answers.UserDisplayName: envs_h_gang_5
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Answers.Text: [link] (https://www.researchgate.net/publication/353501050_Mutational_signatures_emerging_concepts_caveats_and_clinical_applications)
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Body: <p>Where can I find databases for breast cancer mutations (SNPs &amp; indels) phenotype, with chromosome, position, ref, alt, gene, clinical significance.</p>
  <p>So far, I have only found the Clinvar database.</p>
  <p>I need to extract data for breast cancer, in order to train a machine learning model that will be able to predict the pathogenicity of variants (benign, pathogenic etc).</p>
  <p>So I did the extraction of data from clinvar vcf file (chromosome, ref, alt, clinical significance), but the clinvar data for breast cancer is very small.</p>
  
Comments.ContentLicense: CC BY-SA 4.0
Comments.CreationDate: 2022-06-03T16:47:07.070Z
Comments.Text: Please clarify your specific problem or provide additional details to highlight exactly what you need. As it's currently written, it's hard to tell exactly what you're asking.
Comments.UserDisplayName: Community
Tags: <database><cancer>
Title: Where to find database for breast cancer phenotype?
ThreadText: # Where to find database for breast cancer phenotype?
  
  (Asked by: username_0 on 2022-06-03)
  
  Where can I find databases for breast cancer mutations (SNPs & indels) phenotype, with chromosome, position, ref, alt, gene, clinical significance.
  
  So far, I have only found the Clinvar database.
  
  I need to extract data for breast cancer, in order to train a machine learning model that will be able to predict the pathogenicity of variants (benign, pathogenic etc).
  
  So I did the extraction of data from clinvar vcf file (chromosome, ref, alt, clinical significance), but the clinvar data for breast cancer is very small.
  
  **Tags:** database, cancer
  
  > **Comments:**
  > **username_1**: Please clarify your specific problem or provide additional details to highlight exactly what you need. As it's currently written, it's hard to tell exactly what you're asking.  
  
  ---
  
  ## 1 answers
  
  ### Answer by username_2 on 2022-06-04. Score: 1 | Accepted answer
  
  Do you mean this (a product of the BRCA Challenge project):
  
  > <https://brcaexchange.org/>
  
  [![enter image description here](https://i.sstatic.net/S08iv.png)](https://i.sstatic.net/S08iv.png)
  
  > **Comments:**
  > **username_0**: yes it helps thank you  
  > **username_2**: in addition,  username_0,  • the following may need to note • `To gain biological insights, we frequently associate mutational signatures with factors such as driver mutations, germ line variation, epigenetic modifications, and environmental or therapeutic exposures. However, these remain associations until causation is proven.`  
  > **username_2**: [link] (https://www.researchgate.net/publication/353501050_Mutational_signatures_emerging_concepts_caveats_and_clinical_applications)  
  > **username_2**: https://drive.google.com/file/d/18JPIjuPZPM2hnj5O18T4HeQnNil3fU9u/view?usp=sharing  
  > **username_2**: https://drive.google.com/file/d/1ARmO9q9JooamZ_WgNMRuwIjvxKqtMaj5/view?usp=sharing  
  > **username_2**: https://ugc.futurelearn.com/uploads/files/ca/71/ca712acd-e23a-4b3b-b228-45ee17ba1d9e/1_10_HGVS_nomenclature_KTB_AF_CL_KTB_AF2_JD_AF3_KTB_FINAL.pdf  
  
  ---
  
  