Answers.Body: <p>The largest eQTL datasets I can think of is probably <a href="https://eqtlgen.org/" rel="nofollow noreferrer">eQTLGen</a>. This is a meta-analysis of many studies using >30,000 samples from whole blood. This might be less ideal if you want cell-type-specific QTL information.</p>
  
  <p>For other molecular QTLs, I do not think there are large-scale datasets yet.</p>
  
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Answers.CreationDate: 2020-03-23T18:52:37.947Z
Answers.LastActivityDate: 2020-03-23T22:47:22.530Z
Answers.LastEditDate: 2020-03-23T22:47:22.530Z
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Body: <p>I'm familiar with the sQTL and eQTL GTEx data that can be downloaded from the
  <a href="https://gtexportal.org/home/datasets" rel="nofollow noreferrer">GTEx Portal</a>, but I'm interested in gathering at least two other types of molecular QTL datasets:</p>
  
  <ol>
  <li><p>Larger eQTL and/or sQTL datasets (greater overall sample size, even if performed only for blood cells)</p></li>
  <li><p>Other functional molecular QTLs such as methylation QTLs, histone QTLs, DNA accessibility QTLs, etc.</p></li>
  </ol>
  
Tags: <genomics><public-dataset><qtls>
Title: What are the largest fully publicly available molecular QTL datasets?
ThreadText: # What are the largest fully publicly available molecular QTL datasets?
  
  (Asked by: username_0 on 2019-12-30)
  
  I'm familiar with the sQTL and eQTL GTEx data that can be downloaded from the
  [GTEx Portal](https://gtexportal.org/home/datasets), but I'm interested in gathering at least two other types of molecular QTL datasets:
  
  1. Larger eQTL and/or sQTL datasets (greater overall sample size, even if performed only for blood cells)
  2. Other functional molecular QTLs such as methylation QTLs, histone QTLs, DNA accessibility QTLs, etc.
  
  **Tags:** genomics, public-dataset, qtls
  
  
  ---
  
  ## 1 answers
  
  ### Answer by username_1 on 2020-03-23. Score: 1
  
  The largest eQTL datasets I can think of is probably [eQTLGen](https://eqtlgen.org/). This is a meta-analysis of many studies using >30,000 samples from whole blood. This might be less ideal if you want cell-type-specific QTL information.
  
  For other molecular QTLs, I do not think there are large-scale datasets yet.
  
  
  ---
  
  