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Update pubmed25.py

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  1. pubmed25.py +15 -2
pubmed25.py CHANGED
@@ -12,8 +12,21 @@
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  # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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  # See the License for the specific language governing permissions and
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  # limitations under the License.
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- """MEDLINE/PubMed data - Modified for full abstract text extraction."""
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-
 
 
 
 
 
 
 
 
 
 
 
 
 
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  import copy
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  import gzip
 
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  # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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  # See the License for the specific language governing permissions and
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  # limitations under the License.
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+ """
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+ MEDLINE/PubMed data loader for Hugging Face Datasets.
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+
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+ This script is based on the original NCBI PubMed dataset script from Hugging Face.
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+ Modifications by:
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+ - Hoang Ha (LIG): Updated for 2025 baseline structure and integrated full abstract parsing.
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+ - Tiziri Terkmani (Research Engineer, LIG, Team SIGMA): Enhanced abstract parsing logic was adapted for the NanoBubble Project: https://nanobubbles.hypotheses.org/
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+
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+ **Important Caution:** The default URL configuration in this script is set up as an
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+ example and primarily targets files from the **2025 baseline**. To download data
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+ covering the full intended range (e.g., 2015-2025), you **MUST** modify the `_URLs`
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+ list below to include the correct file paths for **ALL** desired years from the
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+ NCBI FTP server (ftp://ftp.ncbi.nlm.nih.gov/pubmed/baseline/). The number of files
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+ per year varies. Use with caution and verify the downloaded data range.
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+ """
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  import copy
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  import gzip