International bioinformatics company
BIOBASE is an international bioinformatics company headquartered in Wolfenbüttel, Germany. The company focuses on the generation, maintenance, and licensing of databases in the field of molecular biology, and their related software platforms.
History.
The company was founded in 1997 as a spin-off from the German Research Centre for Biotechnology (GBF), Braunschweig, Germany, known today as the Helmholtz Research Centre for Infection Research. *The founders were scientists of the GBF Research Group Bioinformatics, headed at that time by Edgar Wingender. The company is now managed by Michael Tysiak (CEO/CFO) and Frank Schacherer (COO).
The company's original product was the TRANSFAC database, a platform for the description and analysis of gene regulatory events and networks. This was subsequently complemented by a number of smaller databases relevant to aspects of gene regulation, and by an early signaling pathway database (TRANSPATH). TRANSPATH constituted the earliest signaling pathway database, alongside the Cell Signaling Network Database (CSNDB) curated by T. Takai at the National Institute of Health Sciences (NIHS) in Tokyo.
By end of 1999, BIOBASE acquired venture capital from the IMH funds, now managed by Triginta Capital, by the MBG (Hannover; until 2007) and the tbg. In 2002, Intec W&amp;G, Tokyo, Japan, invested in the company and remained a shareholder until 2005.
In early 2005, the company acquired the databases produced by Incyte, Wilmington, Delaware, USA, which were operated at the time by Incyte's subsidiary, Proteome Inc in Beverly, MA. The early flagship of Proteome was the Yeast Proteome Database (YPD), which was complemented by a number of similar databases. Their latest achievement before the acquisition was the Human Proteome Survey Database (HumanPSD).
BIOBASE with all subsidiaries was acquired by QIAGEN GmbH on April 2, 2014.
Subsidiaries.
BIOBASE GmbH has three fully owned daughter companies: BIOBASE Corporation in Beverly/Massachusetts, USA (since 2005), BIOBASE Databases India Pvt Ltd. in Bangalore, India (since 2006), and BIOBASE Japan K.K. in Yokohama, Japan (since 2007).
Products and services.
The company's databases provide manually curated content, collected and structured from peer-reviewed scientific primary publications.
The BIOBASE Knowledge Library (BKL) is an integrated database comprising the following modules:
In addition, BIOBASE has developed the ExPlain system for the biological interpretation of gene expression and proteomics data by integrated functional, promoter and pathway analysis.
The "Gene Regulation Portal" offers a number of earlier revisions of company products free of charge to users from non-profit organizations.
A number of third-party products are also distributed by BIOBASE:
In addition to these products, BIOBASE offers Knowledge process outsourcing (KPO) services. These may comprise the development and population of customized databases with specific contents, or systematic analyses of gene expression data.
Scientific projects/research.
BIOBASE is a member of the following publicly funded research consortia, the first two of them being coordinated by BIOBASE (Alexander Kel):
In addition, BIOBASE has entered research partnerships with
References.
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