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Chemical compound
Patellamide A is a peptide natural product produced by "Prochloron didemni", a cyanobacterial symbiont of "Lissoclinum patella", and was first isolated in 1981. Patellamide A is one of many didemnid peptides. Other closely related peptides include patellamides B, C, and D and trunkamide. The patellamides and trunkamide show moderate cytotoxicity and activity against multidrug resistant cancer cell lines.
History.
Patellamide A was first isolated in 1981 from the tunicate "L. patella" collected from the reefs of Korror Island, Palau Islands. "L. patella" has been a rich source of peptide natural products. Aside from the patellamides, the lissoclinamides, ulicyclamide, ulithiacyclamide and ascidiacyclamide were all isolated from "L. patella". The absolute stereochemistry was later determined by X-ray crystallography.
Biosynthesis.
Patellamide A originates from a ribosomal peptide, making it a member of the RiPP superfamily of natural products. This was determined after genome sequencing of "P. didemi" showed a lack of non ribosomal peptide synthetases. The biosynthetic gene cluster for patellamide A contains the genes "patA", "patB", "patC", "patD", "patE", "patF" and "patG". These genes, when introduced into "E. coli", cause the production of patellamide A, definitively confirming their responsibility for patellamide A biosynthesis. The gene "patE" encodes the precursor peptide that contains the primary sequences of patellamides A and C. It has been proposed by Schmidt "et al." that this prepatellamide is heterocyclized to form the oxazoline and thiazoline rings by PatD2. It is proposed that PatG1 is subsequently involved in oxidizing the thiazoline rings to the thiazole rings found in patellamide A. The peptide is then cleaved, possibly by PatA or PatG2, and cyclized, the cyclization is likely aided by adenylation by PatD1, forming the two cyclic peptides, patellamides A and C. Although all the amino acids used in the production of patellamide A are L-amino acids, some of the amino acids found in natural patellamide A are the D-epimers. It is proposed that epimerization of these amino acids occurs spontaneously. This was determined by comparison to a similar system, lissoclinamide 7.