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results/archaea_genome_annotation_details.csv

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+species_name,cds_number,cds_bp,metric,GENERanno,GeneLM,GeneMarkS2,MetaGeneMark2,Prodigal,MetaProdigal,Glimmer3,best_model,second_best_model
+Acidianus_brierleyi_genome_0,1738,2137722,Exact_Match_Rate,0.6823935558112774,0.5040276179516686,0.6472957422324511,0.6904487917146145,0.6726121979286537,0.6518987341772152,0.6501726121979287,MetaGeneMark2,GENERanno
+Acidianus_brierleyi_genome_0,1738,2137722,End_Accuracy,0.806674338319908,0.7008055235903338,0.7963176064441887,0.8239355581127733,0.8158803222094362,0.8032220943613348,0.8055235903337169,MetaGeneMark2,Prodigal
+Acidianus_brierleyi_genome_0,1738,2137722,Start_Accuracy,0.7738780207134638,0.6904487917146145,0.7733026467203682,0.7991944764096662,0.7894131185270425,0.7836593785960875,0.784234752589183,MetaGeneMark2,Prodigal
+Acidianus_brierleyi_genome_0,1738,2137722,Boundary_Accuracy,0.6881472957422324,0.5264672036823935,0.6570771001150748,0.7036823935558113,0.6852704257767549,0.6657077100115075,0.6731875719217492,MetaGeneMark2,GENERanno
+Acidianus_brierleyi_genome_0,1738,2137722,BP_Precision,0.8337274452632825,0.8319574662968757,0.8387679182858775,0.8349409188419009,0.8290903513027033,0.8289159186065291,0.8261981006849666,GeneMarkS2,MetaGeneMark2
+Acidianus_brierleyi_genome_0,1738,2137722,BP_Sensitivity,0.9625367564164096,0.83703353382713,0.9781603969084848,0.9802528111700212,0.9810255964058936,0.9819700597177744,0.9812127114751122,MetaProdigal,Glimmer3
+Aeropyrum_pernix_genome_0,1100,1236166,Exact_Match_Rate,0.5963636363636363,0.2390909090909091,0.7272727272727273,0.6645454545454546,0.7636363636363637,0.730909090909091,0.6963636363636364,Prodigal,MetaProdigal
+Aeropyrum_pernix_genome_0,1100,1236166,End_Accuracy,0.7454545454545455,0.5363636363636364,0.8363636363636363,0.8054545454545454,0.86,0.8427272727272728,0.8227272727272728,Prodigal,MetaProdigal
+Aeropyrum_pernix_genome_0,1100,1236166,Start_Accuracy,0.7881818181818182,0.5836363636363636,0.8618181818181818,0.8218181818181818,0.87,0.8572727272727273,0.8372727272727273,Prodigal,GeneMarkS2
+Aeropyrum_pernix_genome_0,1100,1236166,Boundary_Accuracy,0.600909090909091,0.2563636363636363,0.7345454545454545,0.67,0.7663636363636364,0.7354545454545455,0.7054545454545454,Prodigal,MetaProdigal
+Aeropyrum_pernix_genome_0,1100,1236166,BP_Precision,0.8308964716431233,0.8295013156891553,0.8312864000779784,0.8296330120074412,0.8305717517176184,0.8300008169531967,0.824516821303147,GeneMarkS2,GENERanno
+Aeropyrum_pernix_genome_0,1100,1236166,BP_Sensitivity,0.9910060622926048,0.651295214396772,0.993463661029344,0.992103811300424,0.9950572981298628,0.9944659536017008,0.9908394180069668,Prodigal,MetaProdigal
+Archaeoglobus_fulgidus_genome_0,1437,1825636,Exact_Match_Rate,0.6882393876130828,0.4349338900487126,0.6778009742519137,0.7292971468336813,0.7515657620041754,0.7383437717466945,0.6931106471816284,Prodigal,MetaProdigal
+Archaeoglobus_fulgidus_genome_0,1437,1825636,End_Accuracy,0.8114126652748782,0.6805845511482255,0.8044537230340988,0.8455114822546973,0.8524704244954767,0.8475991649269311,0.8148921363952679,Prodigal,MetaProdigal
+Archaeoglobus_fulgidus_genome_0,1437,1825636,Start_Accuracy,0.8169798190675017,0.6680584551148225,0.8128044537230341,0.8413361169102297,0.8566457898399443,0.8475991649269311,0.8274182324286709,Prodigal,MetaProdigal
+Archaeoglobus_fulgidus_genome_0,1437,1825636,Boundary_Accuracy,0.697981906750174,0.4697286012526096,0.686151704940849,0.7432150313152401,0.7613082811412665,0.7515657620041754,0.7049408489909533,Prodigal,MetaProdigal
+Archaeoglobus_fulgidus_genome_0,1437,1825636,BP_Precision,0.9013935277898418,0.902000215663357,0.8983513377903206,0.8973346461367955,0.900011008399111,0.8989439141846626,0.899455775326986,GeneLM,GENERanno
+Archaeoglobus_fulgidus_genome_0,1437,1825636,BP_Sensitivity,0.9879253038393196,0.7972514783889012,0.9924716646691892,0.993418731883026,0.9941740850859646,0.9933464283132016,0.988304349826581,Prodigal,MetaGeneMark2
+Caldivirga_maquilingensis_genome_0,1366,1557545,Exact_Match_Rate,0.6888726207906296,0.3762811127379209,0.6705710102489019,0.7569546120058566,0.6991215226939971,0.6866764275256223,0.6734992679355783,MetaGeneMark2,Prodigal
+Caldivirga_maquilingensis_genome_0,1366,1557545,End_Accuracy,0.8133235724743777,0.6500732064421669,0.8111273792093704,0.8587115666178624,0.8265007320644217,0.8162518301610542,0.8162518301610542,MetaGeneMark2,Prodigal
+Caldivirga_maquilingensis_genome_0,1366,1557545,Start_Accuracy,0.8243045387994143,0.6515373352855052,0.8250366032210834,0.8674963396778916,0.8345534407027818,0.8279648609077599,0.8118594436310396,MetaGeneMark2,Prodigal
+Caldivirga_maquilingensis_genome_0,1366,1557545,Boundary_Accuracy,0.6910688140556369,0.3828696925329429,0.671303074670571,0.7598828696925329,0.7005856515373353,0.6896046852122987,0.6742313323572474,MetaGeneMark2,Prodigal
+Caldivirga_maquilingensis_genome_0,1366,1557545,BP_Precision,0.8499235611833048,0.8486892867003455,0.8489225958658498,0.8475971900803813,0.8442530528555476,0.8440204950258204,0.8403459699117345,GENERanno,GeneMarkS2
+Caldivirga_maquilingensis_genome_0,1366,1557545,BP_Sensitivity,0.989794837388326,0.7302113261575107,0.9890237521227316,0.9935102998629252,0.9955789399343196,0.9944669335396408,0.9920149979615356,Prodigal,MetaProdigal
+Desulfurococcus_mucosus_genome_0,855,1019958,Exact_Match_Rate,0.6421052631578947,0.2865497076023391,0.7192982456140351,0.6830409356725147,0.6771929824561403,0.6432748538011696,0.6713450292397661,GeneMarkS2,MetaGeneMark2
+Desulfurococcus_mucosus_genome_0,855,1019958,End_Accuracy,0.7824561403508772,0.5859649122807018,0.8385964912280702,0.8175438596491228,0.8128654970760234,0.791812865497076,0.7988304093567251,GeneMarkS2,MetaGeneMark2
+Desulfurococcus_mucosus_genome_0,855,1019958,Start_Accuracy,0.8292397660818713,0.6374269005847953,0.8608187134502924,0.8374269005847953,0.8269005847953217,0.816374269005848,0.8385964912280702,GeneMarkS2,Glimmer3
+Desulfurococcus_mucosus_genome_0,855,1019958,Boundary_Accuracy,0.6514619883040935,0.3111111111111111,0.7239766081871345,0.6888888888888889,0.6771929824561403,0.6444444444444445,0.6771929824561403,GeneMarkS2,MetaGeneMark2
+Desulfurococcus_mucosus_genome_0,855,1019958,BP_Precision,0.8600187429002557,0.850229078919098,0.8582861381880613,0.8564942710641261,0.8575925159786895,0.8561467837297889,0.8503862821103307,GENERanno,GeneMarkS2
+Desulfurococcus_mucosus_genome_0,855,1019958,BP_Sensitivity,0.9924173348314342,0.6944815374750725,0.9959566962561204,0.9948968486937696,0.9958488486780828,0.99535274981911,0.9919947684120326,GeneMarkS2,Prodigal
+Ferroplasma_acidarmanus_genome_0,1230,1492092,Exact_Match_Rate,0.7975609756097561,0.540650406504065,0.7235772357723578,0.802439024390244,0.8008130081300813,0.7796747967479675,0.7113821138211383,MetaGeneMark2,Prodigal
+Ferroplasma_acidarmanus_genome_0,1230,1492092,End_Accuracy,0.8813008130081301,0.7520325203252033,0.8479674796747968,0.8878048780487805,0.8813008130081301,0.8715447154471545,0.8349593495934959,MetaGeneMark2,GENERanno
+Ferroplasma_acidarmanus_genome_0,1230,1492092,Start_Accuracy,0.8845528455284553,0.7284552845528456,0.8463414634146341,0.8902439024390244,0.8853658536585366,0.8747967479674796,0.8349593495934959,MetaGeneMark2,Prodigal
+Ferroplasma_acidarmanus_genome_0,1230,1492092,Boundary_Accuracy,0.7991869918699187,0.5593495934959349,0.7276422764227642,0.8113821138211382,0.802439024390244,0.7861788617886178,0.7146341463414634,MetaGeneMark2,Prodigal
+Ferroplasma_acidarmanus_genome_0,1230,1492092,BP_Precision,0.8794194703274296,0.8688349579082535,0.8765037992902933,0.8746965304294536,0.8704934453308966,0.8706689045814089,0.8685116893858154,GENERanno,GeneMarkS2
+Ferroplasma_acidarmanus_genome_0,1230,1492092,BP_Sensitivity,0.994342842130378,0.8148860794106529,0.990936885929286,0.994841470901258,0.9959767896349556,0.9946504639124129,0.9895073494127709,Prodigal,MetaGeneMark2
+Fervidicoccus_fontis_genome_0,931,999056,Exact_Match_Rate,0.7733619763694952,0.6090225563909775,0.7894736842105263,0.7475832438238453,0.7228786251342643,0.6981740064446831,0.7636949516648764,GeneMarkS2,GENERanno
+Fervidicoccus_fontis_genome_0,931,999056,End_Accuracy,0.8754027926960258,0.7744360902255639,0.878625134264232,0.8549946294307197,0.8399570354457573,0.8292158968850698,0.8668098818474759,GeneMarkS2,GENERanno
+Fervidicoccus_fontis_genome_0,931,999056,Start_Accuracy,0.8668098818474759,0.7851772287862513,0.882921589688507,0.8549946294307197,0.8431793770139635,0.832438238453276,0.8700322234156821,GeneMarkS2,Glimmer3
+Fervidicoccus_fontis_genome_0,931,999056,Boundary_Accuracy,0.7787325456498388,0.6240601503759399,0.7926960257787325,0.7518796992481203,0.7250268528464017,0.7024704618689581,0.7690655209452202,GeneMarkS2,GENERanno
+Fervidicoccus_fontis_genome_0,931,999056,BP_Precision,0.8668083660874979,0.8749074011023138,0.8666867858173943,0.8635085745193165,0.8633236731436876,0.863996000010453,0.8576533207822725,GeneLM,GENERanno
+Fervidicoccus_fontis_genome_0,931,999056,BP_Sensitivity,0.9935609215099054,0.8487912589484473,0.9945979004179946,0.9939532919075608,0.9941284572636568,0.992807210006246,0.9922226581893308,GeneMarkS2,Prodigal
+Halobacterium_salinarum_genome_0,1538,1736459,Exact_Match_Rate,0.811443433029909,0.6456436931079323,0.7438231469440832,0.8342002600780234,0.776332899869961,0.7678803641092328,0.711963589076723,MetaGeneMark2,GENERanno
+Halobacterium_salinarum_genome_0,1538,1736459,End_Accuracy,0.8920676202860858,0.7841352405721717,0.85370611183355,0.8985695708712613,0.8608582574772432,0.864109232769831,0.8315994798439532,MetaGeneMark2,GENERanno
+Halobacterium_salinarum_genome_0,1538,1736459,Start_Accuracy,0.881664499349805,0.788036410923277,0.8511053315994799,0.9037711313394018,0.8680104031209362,0.8693107932379714,0.8374512353706112,MetaGeneMark2,GENERanno
+Halobacterium_salinarum_genome_0,1538,1736459,Boundary_Accuracy,0.8133940182054616,0.6495448634590377,0.7490247074122237,0.8400520156046815,0.7808842652795839,0.7737321196358907,0.7197659297789337,MetaGeneMark2,GENERanno
+Halobacterium_salinarum_genome_0,1538,1736459,BP_Precision,0.8864543708867971,0.8772466787497075,0.8852537964637512,0.8825758660763244,0.8902765110364728,0.8820639210101779,0.8811672336359734,Prodigal,GENERanno
+Halobacterium_salinarum_genome_0,1538,1736459,BP_Sensitivity,0.9918829065356568,0.9025401693906968,0.9908474660213688,0.9936641176094568,0.9882317981593576,0.9934285808072636,0.9894480664386548,MetaGeneMark2,MetaProdigal
+Haloferax_volcanii_genome_0,1955,2147613,Exact_Match_Rate,0.8276214833759591,0.6930946291560103,0.7800511508951407,0.8337595907928389,0.830690537084399,0.8046035805626598,0.7294117647058823,MetaGeneMark2,Prodigal
+Haloferax_volcanii_genome_0,1955,2147613,End_Accuracy,0.9058823529411764,0.8199488491048593,0.887468030690537,0.907928388746803,0.90537084398977,0.8961636828644501,0.8455242966751918,MetaGeneMark2,GENERanno
+Haloferax_volcanii_genome_0,1955,2147613,Start_Accuracy,0.9043478260869564,0.8163682864450128,0.8757033248081841,0.910997442455243,0.9043478260869564,0.8905370843989769,0.8557544757033249,MetaGeneMark2,GENERanno
+Haloferax_volcanii_genome_0,1955,2147613,Boundary_Accuracy,0.830690537084399,0.69923273657289,0.7851662404092071,0.839386189258312,0.8347826086956521,0.8097186700767264,0.7345268542199489,MetaGeneMark2,Prodigal
+Haloferax_volcanii_genome_0,1955,2147613,BP_Precision,0.8615060862522516,0.8550975434642959,0.8578836676296357,0.8572226255629014,0.853495335870176,0.855646831080225,0.8431023345578765,GENERanno,GeneMarkS2
+Haloferax_volcanii_genome_0,1955,2147613,BP_Sensitivity,0.9925740810844412,0.9272424780442288,0.9903143629694922,0.992912130816865,0.9930006011325132,0.993667853565796,0.9906235434410204,MetaProdigal,Prodigal
+Ignicoccus_hospitalis_genome_0,812,964205,Exact_Match_Rate,0.5135467980295566,0.2487684729064039,0.646551724137931,0.6022167487684729,0.6416256157635468,0.6120689655172413,0.541871921182266,GeneMarkS2,Prodigal
+Ignicoccus_hospitalis_genome_0,812,964205,End_Accuracy,0.6921182266009852,0.5172413793103449,0.7746305418719212,0.7475369458128078,0.770935960591133,0.7598522167487685,0.7155172413793104,GeneMarkS2,Prodigal
+Ignicoccus_hospitalis_genome_0,812,964205,Start_Accuracy,0.6921182266009852,0.5233990147783252,0.7623152709359606,0.729064039408867,0.7598522167487685,0.7401477832512315,0.7179802955665024,GeneMarkS2,Prodigal
+Ignicoccus_hospitalis_genome_0,812,964205,Boundary_Accuracy,0.5246305418719212,0.2647783251231527,0.6514778325123153,0.6071428571428571,0.6440886699507389,0.6182266009852216,0.5529556650246306,GeneMarkS2,Prodigal
+Ignicoccus_hospitalis_genome_0,812,964205,BP_Precision,0.7994042048551785,0.7928694470697966,0.8003119198541586,0.7989676445510994,0.8004975382136758,0.7992739126223645,0.7972540361180986,Prodigal,GeneMarkS2
+Ignicoccus_hospitalis_genome_0,812,964205,BP_Sensitivity,0.9913431272395392,0.6621050502745786,0.9925575992657164,0.9903194860014208,0.993511753206009,0.9927888778838524,0.98380323686353,Prodigal,MetaProdigal
+Korarchaeum_cryptofilum_genome_0,962,1260892,Exact_Match_Rate,0.6486486486486487,0.3201663201663202,0.7089397089397089,0.7037422037422038,0.738045738045738,0.7266112266112266,0.6621621621621622,Prodigal,MetaProdigal
+Korarchaeum_cryptofilum_genome_0,962,1260892,End_Accuracy,0.7962577962577962,0.6122661122661123,0.8326403326403327,0.8451143451143451,0.8586278586278586,0.8544698544698545,0.8045738045738046,Prodigal,MetaProdigal
+Korarchaeum_cryptofilum_genome_0,962,1260892,Start_Accuracy,0.7972972972972973,0.5821205821205822,0.8347193347193347,0.8232848232848233,0.8326403326403327,0.8264033264033264,0.8076923076923077,GeneMarkS2,Prodigal
+Korarchaeum_cryptofilum_genome_0,962,1260892,Boundary_Accuracy,0.6538461538461539,0.3451143451143451,0.7130977130977131,0.7110187110187111,0.7411642411642412,0.7318087318087318,0.6663201663201663,Prodigal,MetaProdigal
+Korarchaeum_cryptofilum_genome_0,962,1260892,BP_Precision,0.8670473184809916,0.8610408899804234,0.8652180180130473,0.8630585443353428,0.8657036942173456,0.8653561844847852,0.8596775842865868,GENERanno,Prodigal
+Korarchaeum_cryptofilum_genome_0,962,1260892,BP_Sensitivity,0.9935728040149354,0.7112567928101693,0.9949480209248692,0.9956530773452444,0.997174222693141,0.996678541857669,0.9867871316496576,Prodigal,MetaProdigal
+Metallosphaera_sedula_genome_0,1310,1664413,Exact_Match_Rate,0.684732824427481,0.348854961832061,0.6221374045801527,0.6893129770992367,0.6977099236641221,0.6732824427480916,0.6145038167938931,Prodigal,MetaGeneMark2
+Metallosphaera_sedula_genome_0,1310,1664413,End_Accuracy,0.8015267175572519,0.649618320610687,0.7755725190839695,0.8099236641221375,0.8190839694656489,0.8045801526717558,0.7755725190839695,Prodigal,MetaGeneMark2
+Metallosphaera_sedula_genome_0,1310,1664413,Start_Accuracy,0.8221374045801527,0.6160305343511451,0.7862595419847328,0.8274809160305343,0.8229007633587786,0.815267175572519,0.7755725190839695,MetaGeneMark2,Prodigal
+Metallosphaera_sedula_genome_0,1310,1664413,Boundary_Accuracy,0.6908396946564885,0.383969465648855,0.6312977099236641,0.6954198473282442,0.7038167938931298,0.6854961832061068,0.6221374045801527,Prodigal,MetaGeneMark2
+Metallosphaera_sedula_genome_0,1310,1664413,BP_Precision,0.8538862127394613,0.8496936754981376,0.8529909063967182,0.8525120684816891,0.8493447784252275,0.8499959835386878,0.8472726916205949,GENERanno,GeneMarkS2
+Metallosphaera_sedula_genome_0,1310,1664413,BP_Sensitivity,0.9903581623070716,0.7350339128569652,0.9856826400658972,0.9911061737681692,0.9929122158983378,0.9917604584919728,0.9865009465799656,Prodigal,MetaProdigal
+Methanobrevibacter_smithii_genome_0,1300,1520432,Exact_Match_Rate,0.8715384615384615,0.8038461538461539,0.8584615384615385,0.8384615384615385,0.8661538461538462,0.8392307692307692,0.8584615384615385,GENERanno,Prodigal
+Methanobrevibacter_smithii_genome_0,1300,1520432,End_Accuracy,0.9292307692307692,0.8761538461538462,0.916923076923077,0.9115384615384616,0.9207692307692308,0.9107692307692308,0.92,GENERanno,Prodigal
+Methanobrevibacter_smithii_genome_0,1300,1520432,Start_Accuracy,0.926923076923077,0.8815384615384615,0.92,0.9176923076923076,0.93,0.9146153846153846,0.9215384615384616,Prodigal,GENERanno
+Methanobrevibacter_smithii_genome_0,1300,1520432,Boundary_Accuracy,0.8730769230769231,0.8076923076923077,0.86,0.8461538461538461,0.8676923076923077,0.8438461538461538,0.8653846153846154,GENERanno,Prodigal
+Methanobrevibacter_smithii_genome_0,1300,1520432,BP_Precision,0.9091788704656552,0.9122695847697446,0.908604474252278,0.9076227115293908,0.9056010756854838,0.9052511654221358,0.9081934568366082,GeneLM,GENERanno
+Methanobrevibacter_smithii_genome_0,1300,1520432,BP_Sensitivity,0.9956190082818568,0.9288879739442474,0.9968903574773486,0.9960281025392784,0.9975691119366076,0.9965989929178024,0.9946784861144728,Prodigal,GeneMarkS2
+Methanocaldococcus_jannaschii_genome_0,1329,1303859,Exact_Match_Rate,0.8344620015048909,0.7268623024830699,0.8510158013544018,0.8171557562076749,0.7562076749435666,0.7261098570353649,0.8344620015048909,GeneMarkS2,GENERanno
+Methanocaldococcus_jannaschii_genome_0,1329,1303859,End_Accuracy,0.9021820917983446,0.8449962377727614,0.91196388261851,0.891647855530474,0.8638073739653875,0.8502633559066968,0.9059443190368698,GeneMarkS2,Glimmer3
+Methanocaldococcus_jannaschii_genome_0,1329,1303859,Start_Accuracy,0.9202407825432656,0.8465011286681715,0.9300225733634312,0.91196388261851,0.8653122648607976,0.8472535741158767,0.9164785553047404,GeneMarkS2,GENERanno
+Methanocaldococcus_jannaschii_genome_0,1329,1303859,Boundary_Accuracy,0.8442437923250564,0.7373965387509406,0.8607975921745673,0.8254326561324304,0.7614747930775019,0.7343867569601203,0.8427389014296464,GeneMarkS2,GENERanno
+Methanocaldococcus_jannaschii_genome_0,1329,1303859,BP_Precision,0.8860583549579518,0.8853284686303857,0.8854412620488236,0.8828884156172382,0.8805214685386399,0.8802896875318759,0.8816962707069608,GENERanno,GeneMarkS2
+Methanocaldococcus_jannaschii_genome_0,1329,1303859,BP_Sensitivity,0.9920006687839712,0.9059553218561208,0.9954189831875992,0.9945323842532052,0.994378993434106,0.992829746161203,0.994395866424207,GeneMarkS2,MetaGeneMark2
+Methanococcus_maripaludis_genome_0,1451,1356902,Exact_Match_Rate,0.8945554789800138,0.7732598208132323,0.8986905582356995,0.8690558235699517,0.7966919365954515,0.7698139214334941,0.9028256374913852,Glimmer3,GeneMarkS2
+Methanococcus_maripaludis_genome_0,1451,1356902,End_Accuracy,0.941419710544452,0.875947622329428,0.9483115093039284,0.9331495520330806,0.8862853204686423,0.8738800827015851,0.9462439696760856,GeneMarkS2,Glimmer3
+Methanococcus_maripaludis_genome_0,1451,1356902,Start_Accuracy,0.9448656099241902,0.8580289455547898,0.9441764300482426,0.9317711922811854,0.8904203997243281,0.875947622329428,0.9469331495520332,Glimmer3,GENERanno
+Methanococcus_maripaludis_genome_0,1451,1356902,Boundary_Accuracy,0.8986905582356995,0.7780840799448656,0.9021364576154376,0.8745692625775328,0.7987594762232942,0.7753273604410751,0.904893177119228,Glimmer3,GeneMarkS2
+Methanococcus_maripaludis_genome_0,1451,1356902,BP_Precision,0.8908031077855186,0.8877055660691224,0.8899114550651885,0.8885587099901668,0.8857536100550409,0.8853897532558797,0.8882453364560684,GENERanno,GeneMarkS2
+Methanococcus_maripaludis_genome_0,1451,1356902,BP_Sensitivity,0.997742652011715,0.9143733298351686,0.9971125401834472,0.9969386145793876,0.9955140459664736,0.9935286409777568,0.995034276609512,GENERanno,GeneMarkS2
+Methanoculleus_bourgensis_genome_0,1681,2035212,Exact_Match_Rate,0.7876264128494943,0.6049970255800119,0.7293277810826889,0.7186198691255206,0.752528256989887,0.7251635930993456,0.6579417013682332,GENERanno,Prodigal
+Methanoculleus_bourgensis_genome_0,1681,2035212,End_Accuracy,0.8762641284949435,0.7822724568709102,0.8488994646044021,0.8429506246281975,0.8596073765615705,0.8429506246281975,0.8203450327186199,GENERanno,Prodigal
+Methanoculleus_bourgensis_genome_0,1681,2035212,Start_Accuracy,0.8816180844735276,0.7822724568709102,0.8471148126115408,0.843545508625818,0.8566329565734682,0.8417608566329565,0.7959547888161809,GENERanno,Prodigal
+Methanoculleus_bourgensis_genome_0,1681,2035212,Boundary_Accuracy,0.793575252825699,0.6210588935157644,0.7340868530636526,0.728138013087448,0.7543129089827484,0.7287328970850684,0.6674598453301607,GENERanno,Prodigal
+Methanoculleus_bourgensis_genome_0,1681,2035212,BP_Precision,0.8864345873252939,0.883091184001879,0.8805161660359146,0.8787819727997935,0.8671351836579168,0.8643694175986468,0.8601702407112728,GENERanno,GeneLM
+Methanoculleus_bourgensis_genome_0,1681,2035212,BP_Sensitivity,0.9918239475789254,0.8830161182225734,0.9896580798462272,0.9903130484686608,0.9929363624035236,0.9912706882624512,0.987241132619108,Prodigal,GENERanno
+Methanosaeta_concilii_genome_0,2008,2257255,Exact_Match_Rate,0.7420318725099602,0.5014940239043825,0.6479083665338645,0.6892430278884463,0.646414342629482,0.6324701195219123,0.6195219123505976,GENERanno,MetaGeneMark2
+Methanosaeta_concilii_genome_0,2008,2257255,End_Accuracy,0.8570717131474104,0.7270916334661355,0.8087649402390438,0.8321713147410359,0.7953187250996016,0.7903386454183267,0.7843625498007968,GENERanno,MetaGeneMark2
+Methanosaeta_concilii_genome_0,2008,2257255,Start_Accuracy,0.852589641434263,0.7340637450199203,0.8107569721115537,0.8162350597609562,0.797808764940239,0.7888446215139442,0.7868525896414342,GENERanno,MetaGeneMark2
+Methanosaeta_concilii_genome_0,2008,2257255,Boundary_Accuracy,0.75,0.5283864541832669,0.6633466135458167,0.7006972111553785,0.6538844621513944,0.6444223107569721,0.6309760956175299,GENERanno,MetaGeneMark2
+Methanosaeta_concilii_genome_0,2008,2257255,BP_Precision,0.872015349297311,0.8598861968802595,0.8667417731435187,0.8627231089370209,0.8668105372823337,0.8617959599441737,0.8431807962445882,GENERanno,Prodigal
+Methanosaeta_concilii_genome_0,2008,2257255,BP_Sensitivity,0.9888147329389014,0.7951387858261473,0.9822780323888972,0.9839202925677428,0.9804643250319526,0.9812418180489134,0.9860839825363108,GENERanno,Glimmer3
+Methanosarcina_acetivorans_genome_0,3442,3838069,Exact_Match_Rate,0.7783265543288785,0.6127251597908193,0.7385241138872748,0.7167344567112144,0.7391051714119697,0.6978500871586287,0.6699593259732713,GENERanno,Prodigal
+Methanosarcina_acetivorans_genome_0,3442,3838069,End_Accuracy,0.8675188843695526,0.7760023242300987,0.8495061011040093,0.8355607205113306,0.8503776873910517,0.8158047646717025,0.805636257989541,GENERanno,Prodigal
+Methanosarcina_acetivorans_genome_0,3442,3838069,Start_Accuracy,0.8678094131319001,0.779198140615921,0.8477629285299244,0.8413712957582801,0.8492155723416618,0.835851249273678,0.8018593840790238,GENERanno,Prodigal
+Methanosarcina_acetivorans_genome_0,3442,3838069,Boundary_Accuracy,0.7870424171993027,0.63102847181871,0.7481115630447415,0.7251597908192912,0.7492736780941314,0.7094712376525276,0.6807088901801278,GENERanno,Prodigal
+Methanosarcina_acetivorans_genome_0,3442,3838069,BP_Precision,0.8884350146567993,0.8856883023554959,0.8776701183535179,0.8699071947919508,0.8744524405506884,0.8720971858307842,0.8457396761492346,GENERanno,GeneLM
+Methanosarcina_acetivorans_genome_0,3442,3838069,BP_Sensitivity,0.9776861750010226,0.839402574575913,0.9831086934601748,0.9845878226785396,0.9844799559361752,0.9819331022970144,0.977318802762535,MetaGeneMark2,Prodigal
+Methanospirillum_hungatei_genome_0,2145,2785605,Exact_Match_Rate,0.7589743589743589,0.5463869463869464,0.6685314685314685,0.6946386946386947,0.6764568764568765,0.6806526806526807,0.6634032634032634,GENERanno,MetaGeneMark2
+Methanospirillum_hungatei_genome_0,2145,2785605,End_Accuracy,0.8657342657342657,0.7403263403263404,0.8149184149184149,0.8386946386946387,0.828904428904429,0.8261072261072261,0.8172494172494172,GENERanno,MetaGeneMark2
+Methanospirillum_hungatei_genome_0,2145,2785605,Start_Accuracy,0.8675990675990676,0.7575757575757576,0.8149184149184149,0.8200466200466201,0.8153846153846154,0.8125874125874126,0.8004662004662004,GENERanno,MetaGeneMark2
+Methanospirillum_hungatei_genome_0,2145,2785605,Boundary_Accuracy,0.7668997668997669,0.5720279720279721,0.6806526806526807,0.7072261072261072,0.6927738927738928,0.6913752913752914,0.6755244755244755,GENERanno,MetaGeneMark2
+Methanospirillum_hungatei_genome_0,2145,2785605,BP_Precision,0.8911707272915373,0.8877403698827698,0.8877383723141714,0.8850293085770551,0.8794802778585836,0.8788191926709832,0.8639058704590258,GENERanno,GeneLM
+Methanospirillum_hungatei_genome_0,2145,2785605,BP_Sensitivity,0.9895509234080208,0.8215809492013405,0.980255994658252,0.9844665700987756,0.9876486436519176,0.9876507975825718,0.9865501390182744,GENERanno,MetaProdigal
+Methanothermobacter_thermautotrophicus_genome_0,1358,1443271,Exact_Match_Rate,0.788659793814433,0.5228276877761414,0.7849779086892489,0.7540500736377025,0.7606774668630338,0.7415316642120766,0.759941089837997,GENERanno,GeneMarkS2
+Methanothermobacter_thermautotrophicus_genome_0,1358,1443271,End_Accuracy,0.8829160530191458,0.7488954344624448,0.8843888070692194,0.8762886597938144,0.8770250368188512,0.8674521354933726,0.8814432989690721,GeneMarkS2,GENERanno
+Methanothermobacter_thermautotrophicus_genome_0,1358,1443271,Start_Accuracy,0.894698085419735,0.7606774668630338,0.8924889543446245,0.8667157584683358,0.874079528718704,0.8622974963181149,0.8733431516936672,GENERanno,GeneMarkS2
+Methanothermobacter_thermautotrophicus_genome_0,1358,1443271,Boundary_Accuracy,0.7938144329896907,0.5625920471281296,0.7908689248895434,0.7621502209131075,0.7643593519882179,0.7444771723122239,0.7680412371134021,GENERanno,GeneMarkS2
+Methanothermobacter_thermautotrophicus_genome_0,1358,1443271,BP_Precision,0.917351656123707,0.8971752653104451,0.912985576239153,0.911515561303614,0.9134236913928644,0.9133188251552744,0.9143705844470414,GENERanno,Glimmer3
+Methanothermobacter_thermautotrophicus_genome_0,1358,1443271,BP_Sensitivity,0.996648585054366,0.7982651906675877,0.9960769668343644,0.995702816726727,0.9964150876723776,0.995934928367576,0.9926077638918815,GENERanno,Prodigal
+Natronomonas_pharaonis_genome_0,1734,2073038,Exact_Match_Rate,0.8114186851211073,0.6089965397923875,0.7727797001153403,0.8379469434832757,0.8471741637831603,0.8131487889273357,0.7693194925028836,Prodigal,MetaGeneMark2
+Natronomonas_pharaonis_genome_0,1734,2073038,End_Accuracy,0.8886966551326413,0.776239907727797,0.870242214532872,0.908881199538639,0.9065743944636678,0.8961937716262975,0.8731257208765859,MetaGeneMark2,Prodigal
+Natronomonas_pharaonis_genome_0,1734,2073038,Start_Accuracy,0.8961937716262975,0.7612456747404844,0.8737024221453287,0.9094579008073818,0.916955017301038,0.8979238754325259,0.8627450980392157,Prodigal,MetaGeneMark2
+Natronomonas_pharaonis_genome_0,1734,2073038,Boundary_Accuracy,0.8166089965397924,0.615916955017301,0.776239907727797,0.8442906574394463,0.8471741637831603,0.8183391003460208,0.7716262975778547,Prodigal,MetaGeneMark2
+Natronomonas_pharaonis_genome_0,1734,2073038,BP_Precision,0.8802067165833773,0.8724025303805796,0.8789417898207073,0.8783202509302892,0.8765156081890533,0.8755784818329562,0.8758707212942851,GENERanno,GeneMarkS2
+Natronomonas_pharaonis_genome_0,1734,2073038,BP_Sensitivity,0.9957830006010504,0.8725397218960772,0.9936320511249672,0.9959253038294522,0.997405739788658,0.995892501729346,0.9927941504207834,Prodigal,MetaGeneMark2
+Nitrosopumilus_maritimus_genome_0,1062,1234825,Exact_Match_Rate,0.7919020715630886,0.576271186440678,0.7278719397363466,0.788135593220339,0.7693032015065914,0.7467043314500942,0.7325800376647834,GENERanno,MetaGeneMark2
+Nitrosopumilus_maritimus_genome_0,1062,1234825,End_Accuracy,0.8662900188323918,0.7269303201506592,0.839924670433145,0.85969868173258,0.8512241054613936,0.8361581920903954,0.8455743879472694,GENERanno,MetaGeneMark2
+Nitrosopumilus_maritimus_genome_0,1062,1234825,Start_Accuracy,0.871939736346516,0.731638418079096,0.8220338983050848,0.8653483992467044,0.8465160075329566,0.8389830508474576,0.8314500941619586,GENERanno,MetaGeneMark2
+Nitrosopumilus_maritimus_genome_0,1062,1234825,Boundary_Accuracy,0.7966101694915254,0.5856873822975518,0.7335216572504708,0.7928436911487758,0.7721280602636534,0.7523540489642184,0.7391713747645952,GENERanno,MetaGeneMark2
+Nitrosopumilus_maritimus_genome_0,1062,1234825,BP_Precision,0.8172553063162232,0.8075346580705177,0.8216529014337759,0.8168818556138705,0.8160912976150317,0.8146319935493933,0.8124796746621274,GeneMarkS2,GENERanno
+Nitrosopumilus_maritimus_genome_0,1062,1234825,BP_Sensitivity,0.9974700868544124,0.8098621262122163,0.9917591561557304,0.9945077237665256,0.995264916081226,0.9940809426436944,0.99341526127184,GENERanno,Prodigal
+Nitrososphaera_viennensis_genome_0,1545,1588914,Exact_Match_Rate,0.6640776699029126,0.3611650485436893,0.6368932038834951,0.655663430420712,0.6394822006472491,0.63042071197411,0.6155339805825243,GENERanno,MetaGeneMark2
+Nitrososphaera_viennensis_genome_0,1545,1588914,End_Accuracy,0.7870550161812297,0.6220064724919094,0.7844660194174757,0.7825242718446602,0.7786407766990291,0.7637540453074434,0.7644012944983819,GENERanno,GeneMarkS2
+Nitrososphaera_viennensis_genome_0,1545,1588914,Start_Accuracy,0.8051779935275081,0.6375404530744336,0.7851132686084142,0.8058252427184466,0.7954692556634304,0.7896440129449838,0.7812297734627832,MetaGeneMark2,GENERanno
+Nitrososphaera_viennensis_genome_0,1545,1588914,Boundary_Accuracy,0.6653721682847896,0.3741100323624595,0.6394822006472491,0.6563106796116505,0.6407766990291263,0.6323624595469256,0.6194174757281553,GENERanno,MetaGeneMark2
+Nitrososphaera_viennensis_genome_0,1545,1588914,BP_Precision,0.7335697873312236,0.7285464341960673,0.7341441066535052,0.7285068503129258,0.7363288387114069,0.7295945412009116,0.7256125474377796,Prodigal,GeneMarkS2
+Nitrososphaera_viennensis_genome_0,1545,1588914,BP_Sensitivity,0.990575953135286,0.7243601604617997,0.984824225854892,0.9881925642294044,0.9853711402882724,0.9866594416060278,0.9836139652618078,GENERanno,MetaGeneMark2
+Promethearchaeum_syntrophicum_genome_0,2393,2768792,Exact_Match_Rate,0.8340994567488508,0.7041370664437944,0.7910572503134141,0.7588800668616799,0.8044295862933556,0.7609694943585458,0.7927287923109068,GENERanno,Prodigal
+Promethearchaeum_syntrophicum_genome_0,2393,2768792,End_Accuracy,0.910154617634768,0.8299206017551191,0.8771416631842875,0.868366067697451,0.8917676556623485,0.8679481821980777,0.8888424571667363,GENERanno,Prodigal
+Promethearchaeum_syntrophicum_genome_0,2393,2768792,Start_Accuracy,0.9118261596322608,0.8345173422482239,0.885499373171751,0.8679481821980777,0.8917676556623485,0.8692018386961973,0.8771416631842875,GENERanno,Prodigal
+Promethearchaeum_syntrophicum_genome_0,2393,2768792,Boundary_Accuracy,0.8374425407438362,0.7099874634350188,0.7927287923109068,0.7643125783535312,0.8056832427914752,0.763894692854158,0.7948182198077727,GENERanno,Prodigal
+Promethearchaeum_syntrophicum_genome_0,2393,2768792,BP_Precision,0.7219187257333627,0.7220084561767082,0.7227774692990381,0.7211945444346367,0.7175262569495274,0.7171117772233885,0.7113937494870124,GeneMarkS2,GeneLM
+Promethearchaeum_syntrophicum_genome_0,2393,2768792,BP_Sensitivity,0.9965573434190796,0.8790512252274638,0.989620383185158,0.990906142462128,0.9962951352069784,0.9942570622856466,0.992320838835131,GENERanno,Prodigal
+Pyrobaculum_aerophilum_genome_0,1300,1535180,Exact_Match_Rate,0.5938461538461538,0.2384615384615384,0.4953846153846153,0.6392307692307693,0.6915384615384615,0.6692307692307692,0.5223076923076924,Prodigal,MetaProdigal
+Pyrobaculum_aerophilum_genome_0,1300,1535180,End_Accuracy,0.7561538461538462,0.56,0.693076923076923,0.7861538461538462,0.8123076923076923,0.8061538461538461,0.7084615384615385,Prodigal,MetaProdigal
+Pyrobaculum_aerophilum_genome_0,1300,1535180,Start_Accuracy,0.7453846153846154,0.5230769230769231,0.6953846153846154,0.786923076923077,0.8038461538461539,0.79,0.6984615384615385,Prodigal,MetaProdigal
+Pyrobaculum_aerophilum_genome_0,1300,1535180,Boundary_Accuracy,0.6053846153846154,0.2676923076923077,0.5046153846153846,0.6553846153846153,0.696923076923077,0.6776923076923077,0.5392307692307692,Prodigal,MetaProdigal
+Pyrobaculum_aerophilum_genome_0,1300,1535180,BP_Precision,0.7811521158413356,0.7771072020616403,0.7826482614923819,0.7823638796325129,0.7721869047287777,0.7725129941383828,0.7618376100829466,GeneMarkS2,MetaGeneMark2
+Pyrobaculum_aerophilum_genome_0,1300,1535180,BP_Sensitivity,0.988982399458044,0.6882762933336808,0.9787054286793732,0.9868875311038444,0.9941759272528304,0.9928295053348792,0.9867429226540212,Prodigal,MetaProdigal
+Pyrococcus_furiosus_genome_0,1242,1535266,Exact_Match_Rate,0.7632850241545893,0.5515297906602254,0.748792270531401,0.7246376811594203,0.7093397745571659,0.6827697262479872,0.750402576489533,GENERanno,Glimmer3
+Pyrococcus_furiosus_genome_0,1242,1535266,End_Accuracy,0.8470209339774557,0.7326892109500805,0.8486312399355878,0.8397745571658615,0.8268921095008052,0.8156199677938808,0.857487922705314,Glimmer3,GeneMarkS2
+Pyrococcus_furiosus_genome_0,1242,1535266,Start_Accuracy,0.8623188405797102,0.7351046698872786,0.8462157809983897,0.8333333333333334,0.8180354267310789,0.8091787439613527,0.8405797101449275,GENERanno,GeneMarkS2
+Pyrococcus_furiosus_genome_0,1242,1535266,Boundary_Accuracy,0.7697262479871175,0.5764895330112721,0.7552334943639292,0.7367149758454107,0.714170692431562,0.6916264090177133,0.7592592592592593,GENERanno,Glimmer3
+Pyrococcus_furiosus_genome_0,1242,1535266,BP_Precision,0.8865317020826917,0.8844805492936254,0.8849990292415624,0.8827313070999172,0.8808402964052112,0.8810202561052929,0.8813472743328249,GENERanno,GeneMarkS2
+Pyrococcus_furiosus_genome_0,1242,1535266,BP_Sensitivity,0.9917831828490958,0.8645615808596034,0.9946328518966746,0.9937372416245784,0.9926807471799676,0.9920026887848752,0.9900935733612286,GeneMarkS2,MetaGeneMark2
+Staphylothermus_marinus_genome_0,1051,1151130,Exact_Match_Rate,0.758325404376784,0.6117982873453853,0.7725975261655567,0.7288296860133207,0.6888677450047573,0.6603235014272122,0.7840152235965747,Glimmer3,GeneMarkS2
+Staphylothermus_marinus_genome_0,1051,1151130,End_Accuracy,0.8839200761179828,0.8058991436726927,0.8934348239771646,0.8715509039010466,0.840152235965747,0.829686013320647,0.8867745004757374,GeneMarkS2,Glimmer3
+Staphylothermus_marinus_genome_0,1051,1151130,Start_Accuracy,0.8382492863939106,0.7469077069457659,0.8411037107516651,0.8154138915318744,0.7992388201712655,0.7821122740247384,0.8601332064700286,Glimmer3,GeneMarkS2
+Staphylothermus_marinus_genome_0,1051,1151130,Boundary_Accuracy,0.7659372026641293,0.6251189343482397,0.7764034253092293,0.7335870599429115,0.6917221693625119,0.6660323501427212,0.7897240723120837,Glimmer3,GeneMarkS2
+Staphylothermus_marinus_genome_0,1051,1151130,BP_Precision,0.8285492259124687,0.8294295441559802,0.829121467854767,0.8272808269676476,0.8215031375195646,0.8205605233582538,0.8186209391547065,GeneLM,GeneMarkS2
+Staphylothermus_marinus_genome_0,1051,1151130,BP_Sensitivity,0.9938495217742566,0.8524823434364494,0.9928505034183802,0.991331995517448,0.9939850407860102,0.9919948224787816,0.9946522113054128,Glimmer3,Prodigal
+Sulfolobus_islandicus_genome_0,1578,1954917,Exact_Match_Rate,0.7021546261089987,0.5038022813688213,0.6261089987325729,0.6856780735107731,0.7002534854245881,0.6958174904942965,0.6546261089987325,GENERanno,Prodigal
+Sulfolobus_islandicus_genome_0,1578,1954917,End_Accuracy,0.8143219264892269,0.6983523447401775,0.7686945500633714,0.8079847908745247,0.8073510773130546,0.8162230671736375,0.7927756653992395,MetaProdigal,GENERanno
+Sulfolobus_islandicus_genome_0,1578,1954917,Start_Accuracy,0.8054499366286438,0.6958174904942965,0.7712294043092522,0.8079847908745247,0.8168567807351077,0.8092522179974652,0.8022813688212928,Prodigal,MetaProdigal
+Sulfolobus_islandicus_genome_0,1578,1954917,Boundary_Accuracy,0.7141951837769328,0.5259822560202788,0.638149556400507,0.7046894803548795,0.7110266159695817,0.7129277566539924,0.6787072243346007,GENERanno,MetaProdigal
+Sulfolobus_islandicus_genome_0,1578,1954917,BP_Precision,0.8521310233017292,0.8498596884708458,0.8554665612361902,0.8525630965142029,0.8484326316983527,0.8472420029189258,0.8458560964797166,GeneMarkS2,MetaGeneMark2
+Sulfolobus_islandicus_genome_0,1578,1954917,BP_Sensitivity,0.9789239133937656,0.8102093336954971,0.97621587003438,0.9809091639184682,0.9832744817299148,0.9835046705307692,0.9808907488143996,MetaProdigal,Prodigal
+Sulfolobus_solfataricus_genome_0,1717,1997342,Exact_Match_Rate,0.6301688992428655,0.419336051252184,0.5888177052999417,0.644729178800233,0.6290040768782761,0.6301688992428655,0.5923121723937099,MetaGeneMark2,GENERanno
+Sulfolobus_solfataricus_genome_0,1717,1997342,End_Accuracy,0.7647058823529411,0.6307513104251602,0.7548048922539313,0.778683750728014,0.7623762376237624,0.7734420500873617,0.7559697146185207,MetaGeneMark2,MetaProdigal
+Sulfolobus_solfataricus_genome_0,1717,1997342,Start_Accuracy,0.7682003494467093,0.6476412347117064,0.7478159580663949,0.7885847408270239,0.7641234711706465,0.7711124053581829,0.7588817705299942,MetaGeneMark2,MetaProdigal
+Sulfolobus_solfataricus_genome_0,1717,1997342,Boundary_Accuracy,0.6464764123471171,0.4397204426324985,0.6033779848573093,0.6610366919044846,0.6371578334304019,0.6464764123471171,0.6092020966802563,MetaGeneMark2,GENERanno
+Sulfolobus_solfataricus_genome_0,1717,1997342,BP_Precision,0.8661059204527253,0.8582322402247363,0.8693804792074656,0.8659188335401603,0.8612955914075537,0.8597513091882812,0.8551867750495549,GeneMarkS2,GENERanno
+Sulfolobus_solfataricus_genome_0,1717,1997342,BP_Sensitivity,0.969160514323536,0.7903283463723288,0.9732900024132072,0.9764456963304232,0.9747334207161318,0.978971553194195,0.9743944702509636,MetaProdigal,MetaGeneMark2
+Thermococcus_kodakarensis_genome_0,1369,1601284,Exact_Match_Rate,0.7640613586559533,0.5127830533235939,0.7830533235938641,0.6997808619430241,0.7684441197954711,0.758217677136596,0.7618699780861943,GeneMarkS2,Prodigal
+Thermococcus_kodakarensis_genome_0,1369,1601284,End_Accuracy,0.8590211833455077,0.7136596055514974,0.8721694667640614,0.8203067932797663,0.8590211833455077,0.8553688823959095,0.8560993425858291,GeneMarkS2,GENERanno
+Thermococcus_kodakarensis_genome_0,1369,1601284,Start_Accuracy,0.8677867056245434,0.7326515704894083,0.8663257852447042,0.8239590942293645,0.8641344046749452,0.8597516435354273,0.860482103725347,GENERanno,GeneMarkS2
+Thermococcus_kodakarensis_genome_0,1369,1601284,Boundary_Accuracy,0.7713659605551497,0.5449233016800584,0.7867056245434624,0.7056245434623813,0.7735573411249087,0.7655222790357925,0.7691745799853908,GeneMarkS2,Prodigal
+Thermococcus_kodakarensis_genome_0,1369,1601284,BP_Precision,0.8364124708080581,0.8234515873122917,0.8339099605925001,0.8308295160523471,0.8349103153545884,0.8334759035452459,0.8353970420729563,GENERanno,Glimmer3
+Thermococcus_kodakarensis_genome_0,1369,1601284,BP_Sensitivity,0.9968775058015942,0.8387956165177445,0.9982720117106022,0.9974401792561468,0.997516368114588,0.9966864091566516,0.9925328673739324,GeneMarkS2,Prodigal
+Thermococcus_litoralis_genome_0,1482,1707428,Exact_Match_Rate,0.7624831309041835,0.5890688259109311,0.766531713900135,0.7219973009446694,0.7010796221322537,0.7024291497975709,0.761808367071525,GeneMarkS2,GENERanno
+Thermococcus_litoralis_genome_0,1482,1707428,End_Accuracy,0.8488529014844804,0.7597840755735492,0.8690958164642375,0.8441295546558705,0.8292847503373819,0.8299595141700404,0.8569500674763832,GeneMarkS2,Glimmer3
+Thermococcus_litoralis_genome_0,1482,1707428,Start_Accuracy,0.863697705802969,0.7685560053981106,0.8582995951417004,0.8340080971659919,0.8211875843454791,0.8211875843454791,0.8582995951417004,GENERanno,GeneMarkS2
+Thermococcus_litoralis_genome_0,1482,1707428,Boundary_Accuracy,0.7699055330634278,0.6086369770580297,0.7766531713900134,0.7327935222672065,0.708502024291498,0.7118758434547908,0.7732793522267206,GeneMarkS2,Glimmer3
+Thermococcus_litoralis_genome_0,1482,1707428,BP_Precision,0.8443289411008079,0.8428251702413515,0.8434923419606348,0.8413838624700447,0.8425012287620081,0.8424342056251148,0.839846355247993,GENERanno,GeneMarkS2
+Thermococcus_litoralis_genome_0,1482,1707428,BP_Sensitivity,0.9872656416551678,0.8795773526028623,0.9951500151104468,0.9944290476670172,0.994887632157842,0.9934333980700796,0.992689589253544,GeneMarkS2,Prodigal
+Aeropyrum_pernix_genome_0,1100,1236166,Exact_Match_Rate,0.5963636363636363,0.2390909090909091,0.6454545454545455,0.6454545454545455,0.7636363636363637,0.730909090909091,0.6963636363636364,Prodigal,MetaProdigal
+Aeropyrum_pernix_genome_0,1100,1236166,End_Accuracy,0.7454545454545455,0.5363636363636364,0.79,0.7945454545454546,0.86,0.8427272727272728,0.8227272727272728,Prodigal,MetaProdigal
+Aeropyrum_pernix_genome_0,1100,1236166,Start_Accuracy,0.7881818181818182,0.5836363636363636,0.8072727272727273,0.8054545454545454,0.87,0.8572727272727273,0.8372727272727273,Prodigal,MetaProdigal
+Aeropyrum_pernix_genome_0,1100,1236166,Boundary_Accuracy,0.600909090909091,0.2563636363636363,0.6527272727272727,0.65,0.7663636363636364,0.7354545454545455,0.7054545454545454,Prodigal,MetaProdigal
+Aeropyrum_pernix_genome_0,1100,1236166,BP_Precision,0.8308969304239836,0.8295013156891553,0.8323725916189361,0.8286872919588395,0.8305717517176184,0.8300008169531967,0.824516821303147,GeneMarkS2,GENERanno
+Aeropyrum_pernix_genome_0,1100,1236166,BP_Sensitivity,0.9910092981039764,0.651295214396772,0.988686794492002,0.9918611254475532,0.9950572981298628,0.9944659536017008,0.9908394180069668,Prodigal,MetaProdigal
+Archaeoglobus_fulgidus_genome_0,1437,1825636,Exact_Match_Rate,0.6924147529575505,0.4349338900487126,0.6437021572720947,0.7272094641614475,0.7508698677800975,0.7383437717466945,0.6931106471816284,Prodigal,MetaProdigal
+Archaeoglobus_fulgidus_genome_0,1437,1825636,End_Accuracy,0.8148921363952679,0.6805845511482255,0.7856645789839944,0.8413361169102297,0.8517745302713987,0.8475991649269311,0.8148921363952679,Prodigal,MetaProdigal
+Archaeoglobus_fulgidus_genome_0,1437,1825636,Start_Accuracy,0.8204592901878914,0.6680584551148225,0.7974947807933194,0.8434237995824635,0.8566457898399443,0.8475991649269311,0.8274182324286709,Prodigal,MetaProdigal
+Archaeoglobus_fulgidus_genome_0,1437,1825636,Boundary_Accuracy,0.7000695894224078,0.4697286012526096,0.6541405706332637,0.7411273486430062,0.7606123869171886,0.7515657620041754,0.7049408489909533,Prodigal,MetaProdigal
+Archaeoglobus_fulgidus_genome_0,1437,1825636,BP_Precision,0.901295152061734,0.902000215663357,0.899834730814268,0.8972821938355762,0.89992354368571,0.8989439141846626,0.899455775326986,GeneLM,GENERanno
+Archaeoglobus_fulgidus_genome_0,1437,1825636,BP_Sensitivity,0.9935501929190704,0.7972514783889012,0.9904340186105006,0.9934850101553652,0.9941740850859646,0.9933464283132016,0.988304349826581,Prodigal,GENERanno
+Halobacterium_salinarum_genome_0,1538,1736459,Exact_Match_Rate,0.8153446033810143,0.6456436931079323,0.7548764629388817,0.8355006501950585,0.8511053315994799,0.7678803641092328,0.711963589076723,Prodigal,MetaGeneMark2
+Halobacterium_salinarum_genome_0,1538,1736459,End_Accuracy,0.893368010403121,0.7841352405721717,0.8589076723016905,0.8979193758127438,0.90962288686606,0.864109232769831,0.8315994798439532,Prodigal,MetaGeneMark2
+Halobacterium_salinarum_genome_0,1538,1736459,Start_Accuracy,0.8855656697009102,0.788036410923277,0.8543563068920677,0.9057217165149544,0.9050715214564368,0.8693107932379714,0.8374512353706112,MetaGeneMark2,Prodigal
+Halobacterium_salinarum_genome_0,1538,1736459,Boundary_Accuracy,0.8166449934980494,0.6495448634590377,0.7600780234070221,0.8413524057217165,0.85370611183355,0.7737321196358907,0.7197659297789337,Prodigal,MetaGeneMark2
+Halobacterium_salinarum_genome_0,1538,1736459,BP_Precision,0.8865472025281389,0.8772466787497075,0.8856345211344175,0.8826249845262368,0.8869213800133338,0.8820639210101779,0.8811672336359734,Prodigal,GENERanno
+Halobacterium_salinarum_genome_0,1538,1736459,BP_Sensitivity,0.9951925153430056,0.9025401693906968,0.9916347002722208,0.9936675729170684,0.9921316886836948,0.9934285808072636,0.9894480664386548,GENERanno,MetaGeneMark2
+Natronomonas_pharaonis_genome_0,1734,2073038,Exact_Match_Rate,0.8131487889273357,0.6089965397923875,0.7912341407151096,0.8385236447520185,0.864475201845444,0.8131487889273357,0.7693194925028836,Prodigal,MetaGeneMark2
+Natronomonas_pharaonis_genome_0,1734,2073038,End_Accuracy,0.889273356401384,0.776239907727797,0.8846597462514417,0.9071510957324106,0.9163783160322952,0.8961937716262975,0.8731257208765859,Prodigal,MetaGeneMark2
+Natronomonas_pharaonis_genome_0,1734,2073038,Start_Accuracy,0.8973471741637832,0.7612456747404844,0.8800461361014994,0.9117647058823528,0.9232987312572088,0.8979238754325259,0.8627450980392157,Prodigal,MetaGeneMark2
+Natronomonas_pharaonis_genome_0,1734,2073038,Boundary_Accuracy,0.817762399077278,0.615916955017301,0.792964244521338,0.8448673587081892,0.864475201845444,0.8183391003460208,0.7716262975778547,Prodigal,MetaGeneMark2
+Natronomonas_pharaonis_genome_0,1734,2073038,BP_Precision,0.8800830223614445,0.8724025303805796,0.8801640300027401,0.8782332160286362,0.8785940687327752,0.8755784818329562,0.8758707212942851,GeneMarkS2,GENERanno
+Natronomonas_pharaonis_genome_0,1734,2073038,BP_Sensitivity,0.9969349331753689,0.8725397218960772,0.9947777127095596,0.996050723623976,0.9978997008255516,0.995892501729346,0.9927941504207834,Prodigal,GENERanno

results/archaea_plasmid_annotation_details.csv

@@ -0,0 +1,91 @@
+species_name,cds_number,cds_bp,metric,GENERanno,GeneLM,GeneMarkS2,MetaGeneMark2,Prodigal,MetaProdigal,Glimmer3,best_model,second_best_model
+Halobacterium_salinarum_plasmid_1,95,109026,Exact_Match_Rate,0.6210526315789474,0.5157894736842106,0.6526315789473685,0.6421052631578947,0.7263157894736842,0.6842105263157895,0.5684210526315789,Prodigal,MetaProdigal
+Halobacterium_salinarum_plasmid_1,95,109026,End_Accuracy,0.8631578947368421,0.7684210526315789,0.8736842105263158,0.8210526315789474,0.8631578947368421,0.8210526315789474,0.7684210526315789,GeneMarkS2,GENERanno
+Halobacterium_salinarum_plasmid_1,95,109026,Start_Accuracy,0.7052631578947368,0.6736842105263158,0.7157894736842105,0.7789473684210526,0.8105263157894737,0.8,0.7368421052631579,Prodigal,MetaProdigal
+Halobacterium_salinarum_plasmid_1,95,109026,Boundary_Accuracy,0.631578947368421,0.5157894736842106,0.6526315789473685,0.6421052631578947,0.7263157894736842,0.6842105263157895,0.5789473684210527,Prodigal,MetaProdigal
+Halobacterium_salinarum_plasmid_1,95,109026,BP_Precision,0.8638473102817178,0.8565393433826041,0.859594396350212,0.8511475409836066,0.8436133206649339,0.8424416871892205,0.8436715158982135,GENERanno,GeneMarkS2
+Halobacterium_salinarum_plasmid_1,95,109026,BP_Sensitivity,0.9697503347825288,0.805229945150698,0.9781428283161816,0.9762441986315192,0.9854071505879332,0.9852053638581624,0.979802982774751,Prodigal,MetaProdigal
+Halobacterium_salinarum_plasmid_2,55,63643,Exact_Match_Rate,0.6,0.509090909090909,0.5818181818181818,0.6727272727272727,0.6,0.6,0.6181818181818182,MetaGeneMark2,Glimmer3
+Halobacterium_salinarum_plasmid_2,55,63643,End_Accuracy,0.7636363636363637,0.7272727272727273,0.7818181818181819,0.7818181818181819,0.7272727272727273,0.7272727272727273,0.7454545454545455,GeneMarkS2,MetaGeneMark2
+Halobacterium_salinarum_plasmid_2,55,63643,Start_Accuracy,0.7272727272727273,0.6363636363636364,0.6909090909090909,0.8,0.7818181818181819,0.7636363636363637,0.7090909090909091,MetaGeneMark2,Prodigal
+Halobacterium_salinarum_plasmid_2,55,63643,Boundary_Accuracy,0.6,0.509090909090909,0.5818181818181818,0.6727272727272727,0.6,0.6,0.6181818181818182,MetaGeneMark2,Glimmer3
+Halobacterium_salinarum_plasmid_2,55,63643,BP_Precision,0.7468433886192994,0.7462665226232842,0.7359323849770847,0.7361198869800546,0.7187204610951009,0.7161778074404797,0.717208487892542,GENERanno,GeneLM
+Halobacterium_salinarum_plasmid_2,55,63643,BP_Sensitivity,0.9721414766745754,0.7380701726819917,0.9713872696133118,0.970177395785868,0.9796678346401018,0.9779237308109298,0.9782379837531228,Prodigal,Glimmer3
+Haloferax_volcanii_plasmid_1,38,46760,Exact_Match_Rate,0.6052631578947368,0.4736842105263157,0.5789473684210527,0.5789473684210527,0.631578947368421,0.631578947368421,0.5526315789473685,Prodigal,MetaProdigal
+Haloferax_volcanii_plasmid_1,38,46760,End_Accuracy,0.6842105263157895,0.6842105263157895,0.7105263157894737,0.7368421052631579,0.7105263157894737,0.7105263157894737,0.6842105263157895,MetaGeneMark2,GeneMarkS2
+Haloferax_volcanii_plasmid_1,38,46760,Start_Accuracy,0.8157894736842105,0.7105263157894737,0.7894736842105263,0.7631578947368421,0.8157894736842105,0.8157894736842105,0.7368421052631579,GENERanno,Prodigal
+Haloferax_volcanii_plasmid_1,38,46760,Boundary_Accuracy,0.6578947368421053,0.5,0.6052631578947368,0.6052631578947368,0.6578947368421053,0.6578947368421053,0.5789473684210527,GENERanno,Prodigal
+Haloferax_volcanii_plasmid_1,38,46760,BP_Precision,0.6861062656168969,0.6787300857843137,0.6808878728432629,0.6834724898308714,0.6659401421842545,0.6722056168802344,0.6494836550103269,GENERanno,MetaGeneMark2
+Haloferax_volcanii_plasmid_1,38,46760,BP_Sensitivity,0.9336826347305388,0.7580410607356716,0.9426860564585116,0.9558383233532934,0.9735885372112916,0.971535500427716,0.9751283147989734,Glimmer3,Prodigal
+Haloferax_volcanii_plasmid_2,1,2646,Exact_Match_Rate,1.0,0.0,1.0,1.0,1.0,1.0,1.0,GENERanno,GeneMarkS2
+Haloferax_volcanii_plasmid_2,1,2646,End_Accuracy,1.0,1.0,1.0,1.0,1.0,1.0,1.0,GENERanno,GeneLM
+Haloferax_volcanii_plasmid_2,1,2646,Start_Accuracy,1.0,0.0,1.0,1.0,1.0,1.0,1.0,GENERanno,GeneMarkS2
+Haloferax_volcanii_plasmid_2,1,2646,Boundary_Accuracy,1.0,0.0,1.0,1.0,1.0,1.0,1.0,GENERanno,GeneMarkS2
+Haloferax_volcanii_plasmid_2,1,2646,BP_Precision,0.5205587251623057,0.4343232438606511,0.5065084226646248,0.5076745970836531,0.4999055356130739,0.4999055356130739,0.5354107648725213,Glimmer3,GENERanno
+Haloferax_volcanii_plasmid_2,1,2646,BP_Sensitivity,1.0,0.5748299319727891,1.0,1.0,1.0,1.0,1.0,GENERanno,GeneMarkS2
+Haloferax_volcanii_plasmid_3,266,351049,Exact_Match_Rate,0.7857142857142857,0.6428571428571429,0.7706766917293233,0.793233082706767,0.7819548872180451,0.7593984962406015,0.7218045112781954,MetaGeneMark2,GENERanno
+Haloferax_volcanii_plasmid_3,266,351049,End_Accuracy,0.8759398496240601,0.7969924812030075,0.8834586466165414,0.9022556390977444,0.8872180451127819,0.8834586466165414,0.849624060150376,MetaGeneMark2,Prodigal
+Haloferax_volcanii_plasmid_3,266,351049,Start_Accuracy,0.8984962406015038,0.7969924812030075,0.8796992481203008,0.8834586466165414,0.8759398496240601,0.8609022556390977,0.8533834586466166,GENERanno,MetaGeneMark2
+Haloferax_volcanii_plasmid_3,266,351049,Boundary_Accuracy,0.7857142857142857,0.6428571428571429,0.7781954887218046,0.8007518796992481,0.7857142857142857,0.7631578947368421,0.7330827067669173,MetaGeneMark2,GENERanno
+Haloferax_volcanii_plasmid_3,266,351049,BP_Precision,0.9292415752043082,0.9263966344918916,0.9264218843370294,0.9238375172121596,0.9212689679933262,0.9207623424994056,0.9121087591701176,GENERanno,GeneMarkS2
+Haloferax_volcanii_plasmid_3,266,351049,BP_Sensitivity,0.993411176217565,0.9246259069246744,0.9936533076579052,0.9938156781531924,0.9940862956453372,0.992946853573148,0.9888477107184468,Prodigal,MetaGeneMark2
+Haloferax_volcanii_plasmid_4,385,445574,Exact_Match_Rate,0.7272727272727273,0.5506493506493506,0.6779220779220779,0.7220779220779221,0.7220779220779221,0.7246753246753247,0.6207792207792208,GENERanno,MetaProdigal
+Haloferax_volcanii_plasmid_4,385,445574,End_Accuracy,0.825974025974026,0.7272727272727273,0.8077922077922078,0.825974025974026,0.8181818181818182,0.8207792207792208,0.7688311688311689,GENERanno,MetaGeneMark2
+Haloferax_volcanii_plasmid_4,385,445574,Start_Accuracy,0.8623376623376623,0.7532467532467533,0.8155844155844156,0.8493506493506493,0.8675324675324675,0.8597402597402597,0.8077922077922078,Prodigal,GENERanno
+Haloferax_volcanii_plasmid_4,385,445574,Boundary_Accuracy,0.7350649350649351,0.5584415584415584,0.6831168831168831,0.7298701298701299,0.7272727272727273,0.7324675324675325,0.6233766233766234,GENERanno,MetaProdigal
+Haloferax_volcanii_plasmid_4,385,445574,BP_Precision,0.8404391032517086,0.8226453209871727,0.8332582494790458,0.8340969766594214,0.8281055343328567,0.8235089230538754,0.8080702826697694,GENERanno,MetaGeneMark2
+Haloferax_volcanii_plasmid_4,385,445574,BP_Sensitivity,0.984714099117094,0.8517866841422524,0.9755057521309592,0.9809504145214936,0.98907701077711,0.98695615094238,0.9850799193848834,Prodigal,MetaProdigal
+Methanocaldococcus_jannaschii_plasmid_1,29,33286,Exact_Match_Rate,0.7931034482758621,0.5517241379310345,0.8620689655172413,0.7931034482758621,0.7931034482758621,0.7586206896551724,0.7931034482758621,GeneMarkS2,GENERanno
+Methanocaldococcus_jannaschii_plasmid_1,29,33286,End_Accuracy,0.7931034482758621,0.6896551724137931,0.8620689655172413,0.8275862068965517,0.7931034482758621,0.7931034482758621,0.8275862068965517,GeneMarkS2,MetaGeneMark2
+Methanocaldococcus_jannaschii_plasmid_1,29,33286,Start_Accuracy,0.8620689655172413,0.8275862068965517,0.896551724137931,0.8620689655172413,0.8620689655172413,0.8275862068965517,0.896551724137931,GeneMarkS2,Glimmer3
+Methanocaldococcus_jannaschii_plasmid_1,29,33286,Boundary_Accuracy,0.7931034482758621,0.6551724137931034,0.8620689655172413,0.7931034482758621,0.7931034482758621,0.7586206896551724,0.8275862068965517,GeneMarkS2,Glimmer3
+Methanocaldococcus_jannaschii_plasmid_1,29,33286,BP_Precision,0.7360116408612418,0.7453849785087828,0.7315164717912239,0.7301590818451722,0.7230620495693444,0.7217280534141574,0.7094609129630426,GeneLM,GENERanno
+Methanocaldococcus_jannaschii_plasmid_1,29,33286,BP_Sensitivity,0.972541008231689,0.9013098600012016,0.988643874301508,0.9900558793486752,0.988643874301508,0.9872318692543413,0.9908069458631256,Glimmer3,MetaGeneMark2
+Methanocaldococcus_jannaschii_plasmid_2,6,8766,Exact_Match_Rate,0.5,0.5,0.6666666666666666,0.6666666666666666,0.5,0.5,0.3333333333333333,GeneMarkS2,MetaGeneMark2
+Methanocaldococcus_jannaschii_plasmid_2,6,8766,End_Accuracy,0.6666666666666666,0.5,0.6666666666666666,0.6666666666666666,0.6666666666666666,0.6666666666666666,0.5,GENERanno,GeneMarkS2
+Methanocaldococcus_jannaschii_plasmid_2,6,8766,Start_Accuracy,0.5,0.6666666666666666,0.8333333333333334,0.8333333333333334,0.5,0.6666666666666666,0.3333333333333333,GeneMarkS2,MetaGeneMark2
+Methanocaldococcus_jannaschii_plasmid_2,6,8766,Boundary_Accuracy,0.5,0.5,0.6666666666666666,0.6666666666666666,0.5,0.5,0.3333333333333333,GeneMarkS2,MetaGeneMark2
+Methanocaldococcus_jannaschii_plasmid_2,6,8766,BP_Precision,0.6212283329766745,0.6436174406686115,0.6187127024722933,0.6186314218716692,0.6153465696318802,0.609151973131822,0.5823583743842364,GeneLM,GENERanno
+Methanocaldococcus_jannaschii_plasmid_2,6,8766,BP_Sensitivity,0.9934976043805612,0.931211498973306,0.9934976043805612,0.9931553730321696,0.9934976043805612,0.9931553730321696,0.8631074606433949,GENERanno,GeneMarkS2
+Methanosaeta_concilii_plasmid_1,4,1842,Exact_Match_Rate,0.5,0.5,0.5,0.5,0.5,0.5,0.5,GENERanno,GeneLM
+Methanosaeta_concilii_plasmid_1,4,1842,End_Accuracy,0.75,0.5,0.75,0.75,0.75,0.75,0.75,GENERanno,GeneMarkS2
+Methanosaeta_concilii_plasmid_1,4,1842,Start_Accuracy,0.75,0.75,0.75,0.75,0.75,0.75,0.75,GENERanno,GeneLM
+Methanosaeta_concilii_plasmid_1,4,1842,Boundary_Accuracy,0.5,0.5,0.5,0.5,0.5,0.5,0.5,GENERanno,GeneLM
+Methanosaeta_concilii_plasmid_1,4,1842,BP_Precision,0.1588478785788203,0.1428851047171657,0.1501344852881245,0.1482494969818913,0.1558111994586364,0.1447885552586071,0.1284877232142857,GENERanno,Prodigal
+Methanosaeta_concilii_plasmid_1,4,1842,BP_Sensitivity,1.0,0.7926167209554832,1.0,1.0,1.0,1.0,1.0,GENERanno,GeneMarkS2
+Natronomonas_pharaonis_plasmid_1,3,1614,Exact_Match_Rate,0.0,0.3333333333333333,0.6666666666666666,0.3333333333333333,0.3333333333333333,0.3333333333333333,0.0,GeneMarkS2,GeneLM
+Natronomonas_pharaonis_plasmid_1,3,1614,End_Accuracy,0.0,0.3333333333333333,0.6666666666666666,0.3333333333333333,0.3333333333333333,0.3333333333333333,0.0,GeneMarkS2,GeneLM
+Natronomonas_pharaonis_plasmid_1,3,1614,Start_Accuracy,0.3333333333333333,0.6666666666666666,0.6666666666666666,1.0,1.0,1.0,0.3333333333333333,MetaGeneMark2,Prodigal
+Natronomonas_pharaonis_plasmid_1,3,1614,Boundary_Accuracy,0.0,0.3333333333333333,0.6666666666666666,0.3333333333333333,0.3333333333333333,0.3333333333333333,0.0,GeneMarkS2,GeneLM
+Natronomonas_pharaonis_plasmid_1,3,1614,BP_Precision,0.0552503368922981,0.0689845779669448,0.063712477026751,0.0802567419643745,0.0796879628715315,0.0799603666088679,0.061195836359235,MetaGeneMark2,MetaProdigal
+Natronomonas_pharaonis_plasmid_1,3,1614,BP_Sensitivity,0.6604708798017348,0.7732342007434945,0.7732342007434945,0.9993804213135068,1.0,1.0,0.7831474597273854,Prodigal,MetaProdigal
+Natronomonas_pharaonis_plasmid_2,77,89870,Exact_Match_Rate,0.7012987012987013,0.4415584415584415,0.5454545454545454,0.6753246753246753,0.6883116883116883,0.6883116883116883,0.5844155844155844,GENERanno,Prodigal
+Natronomonas_pharaonis_plasmid_2,77,89870,End_Accuracy,0.8051948051948052,0.6883116883116883,0.7272727272727273,0.8181818181818182,0.8051948051948052,0.8051948051948052,0.7792207792207793,MetaGeneMark2,GENERanno
+Natronomonas_pharaonis_plasmid_2,77,89870,Start_Accuracy,0.8181818181818182,0.6233766233766234,0.7532467532467533,0.7922077922077922,0.8051948051948052,0.8051948051948052,0.7012987012987013,GENERanno,Prodigal
+Natronomonas_pharaonis_plasmid_2,77,89870,Boundary_Accuracy,0.7012987012987013,0.4415584415584415,0.5584415584415584,0.7012987012987013,0.6883116883116883,0.6883116883116883,0.5844155844155844,GENERanno,MetaGeneMark2
+Natronomonas_pharaonis_plasmid_2,77,89870,BP_Precision,0.8441896522022089,0.8206721404443129,0.8453289818754006,0.8408012903102662,0.8114014470712936,0.812648316235607,0.8046610632027071,GeneMarkS2,GENERanno
+Natronomonas_pharaonis_plasmid_2,77,89870,BP_Sensitivity,0.9814843663068876,0.7407143651941693,0.9683987982641592,0.9803048848336486,0.9795593635250918,0.9792923111160564,0.984288416601758,Glimmer3,GENERanno
+Halobacterium_salinarum_plasmid_1,95,109026,Exact_Match_Rate,0.6210526315789474,0.5157894736842106,0.6631578947368421,0.6421052631578947,0.6631578947368421,0.6842105263157895,0.5684210526315789,MetaProdigal,GeneMarkS2
+Halobacterium_salinarum_plasmid_1,95,109026,End_Accuracy,0.8631578947368421,0.7684210526315789,0.8631578947368421,0.8210526315789474,0.7894736842105263,0.8210526315789474,0.7684210526315789,GENERanno,GeneMarkS2
+Halobacterium_salinarum_plasmid_1,95,109026,Start_Accuracy,0.7263157894736842,0.6736842105263158,0.7368421052631579,0.7684210526315789,0.7789473684210526,0.8,0.7368421052631579,MetaProdigal,Prodigal
+Halobacterium_salinarum_plasmid_1,95,109026,Boundary_Accuracy,0.631578947368421,0.5157894736842106,0.6631578947368421,0.6421052631578947,0.6631578947368421,0.6842105263157895,0.5789473684210527,MetaProdigal,GeneMarkS2
+Halobacterium_salinarum_plasmid_1,95,109026,BP_Precision,0.862152338429549,0.8565393433826041,0.8584470838503812,0.8509433962264151,0.8462794458007038,0.8424416871892205,0.8436715158982135,GENERanno,GeneMarkS2
+Halobacterium_salinarum_plasmid_1,95,109026,BP_Sensitivity,0.9811879735109056,0.805229945150698,0.977152238915488,0.9762441986315192,0.9793076880744044,0.9852053638581624,0.979802982774751,MetaProdigal,GENERanno
+Halobacterium_salinarum_plasmid_2,55,63643,Exact_Match_Rate,0.6,0.509090909090909,0.6363636363636364,0.6727272727272727,0.4727272727272727,0.6,0.6181818181818182,MetaGeneMark2,GeneMarkS2
+Halobacterium_salinarum_plasmid_2,55,63643,End_Accuracy,0.7636363636363637,0.7272727272727273,0.8,0.8,0.5818181818181818,0.7272727272727273,0.7454545454545455,GeneMarkS2,MetaGeneMark2
+Halobacterium_salinarum_plasmid_2,55,63643,Start_Accuracy,0.7636363636363637,0.6363636363636364,0.7090909090909091,0.7818181818181819,0.6545454545454545,0.7636363636363637,0.7090909090909091,MetaGeneMark2,GENERanno
+Halobacterium_salinarum_plasmid_2,55,63643,Boundary_Accuracy,0.6,0.509090909090909,0.6363636363636364,0.6727272727272727,0.4727272727272727,0.6,0.6181818181818182,MetaGeneMark2,GeneMarkS2
+Halobacterium_salinarum_plasmid_2,55,63643,BP_Precision,0.7493222181084213,0.7462665226232842,0.7438024466080025,0.7381364738482854,0.710356702978703,0.7161778074404797,0.717208487892542,GENERanno,GeneLM
+Halobacterium_salinarum_plasmid_2,55,63643,BP_Sensitivity,0.9858114796599784,0.7380701726819917,0.9735241896202254,0.9710258787297896,0.933409801549267,0.9779237308109298,0.9782379837531228,GENERanno,Glimmer3
+Natronomonas_pharaonis_plasmid_1,3,1614,Exact_Match_Rate,0.0,0.3333333333333333,0.6666666666666666,0.3333333333333333,0.0,0.3333333333333333,0.0,GeneMarkS2,GeneLM
+Natronomonas_pharaonis_plasmid_1,3,1614,End_Accuracy,0.0,0.3333333333333333,0.6666666666666666,0.3333333333333333,0.0,0.3333333333333333,0.0,GeneMarkS2,GeneLM
+Natronomonas_pharaonis_plasmid_1,3,1614,Start_Accuracy,0.3333333333333333,0.6666666666666666,0.6666666666666666,1.0,0.3333333333333333,1.0,0.3333333333333333,MetaGeneMark2,MetaProdigal
+Natronomonas_pharaonis_plasmid_1,3,1614,Boundary_Accuracy,0.0,0.3333333333333333,0.6666666666666666,0.3333333333333333,0.0,0.3333333333333333,0.0,GeneMarkS2,GeneLM
+Natronomonas_pharaonis_plasmid_1,3,1614,BP_Precision,0.0552503368922981,0.0689845779669448,0.0641117846501592,0.0802567419643745,0.064066852367688,0.0799603666088679,0.061195836359235,MetaGeneMark2,MetaProdigal
+Natronomonas_pharaonis_plasmid_1,3,1614,BP_Sensitivity,0.6604708798017348,0.7732342007434945,0.7732342007434945,0.9993804213135068,0.8122676579925651,1.0,0.7831474597273854,MetaProdigal,MetaGeneMark2
+Natronomonas_pharaonis_plasmid_2,77,89870,Exact_Match_Rate,0.6883116883116883,0.4415584415584415,0.5844155844155844,0.6883116883116883,0.6233766233766234,0.6883116883116883,0.5844155844155844,GENERanno,MetaGeneMark2
+Natronomonas_pharaonis_plasmid_2,77,89870,End_Accuracy,0.8051948051948052,0.6883116883116883,0.7272727272727273,0.8181818181818182,0.7532467532467533,0.8051948051948052,0.7792207792207793,MetaGeneMark2,GENERanno
+Natronomonas_pharaonis_plasmid_2,77,89870,Start_Accuracy,0.8051948051948052,0.6233766233766234,0.7922077922077922,0.8051948051948052,0.7922077922077922,0.8051948051948052,0.7012987012987013,GENERanno,MetaGeneMark2
+Natronomonas_pharaonis_plasmid_2,77,89870,Boundary_Accuracy,0.6883116883116883,0.4415584415584415,0.5974025974025974,0.7142857142857143,0.6363636363636364,0.6883116883116883,0.5844155844155844,MetaGeneMark2,GENERanno
+Natronomonas_pharaonis_plasmid_2,77,89870,BP_Precision,0.8417770849571318,0.8206721404443129,0.8455223303971565,0.8408514129791822,0.8053632507867013,0.812648316235607,0.8046610632027071,GeneMarkS2,GENERanno
+Natronomonas_pharaonis_plasmid_2,77,89870,BP_Sensitivity,0.985423389340158,0.7407143651941693,0.9740959163235784,0.980672081896072,0.98248581284077,0.9792923111160564,0.984288416601758,GENERanno,Glimmer3

results/bacteria_genome_annotation_details.csv

@@ -0,0 +1,199 @@
+species_name,cds_number,cds_bp,metric,GENERanno,GeneLM,GeneMarkS2,MetaGeneMark2,Prodigal,MetaProdigal,Glimmer3,best_model,second_best_model
+Bacillus_anthracis_genome_0,4220,4170789,Exact_Match_Rate,0.926777251184834,0.8386255924170616,0.8218009478672986,0.7774881516587677,0.859478672985782,0.7483412322274882,0.8343601895734597,GENERanno,Prodigal
+Bacillus_anthracis_genome_0,4220,4170789,End_Accuracy,0.9618483412322276,0.912085308056872,0.9061611374407584,0.8864928909952606,0.9296208530805689,0.8661137440758294,0.919431279620853,GENERanno,Prodigal
+Bacillus_anthracis_genome_0,4220,4170789,Start_Accuracy,0.9609004739336492,0.9116113744075828,0.906872037914692,0.8781990521327014,0.9274881516587676,0.8699052132701421,0.9161137440758294,GENERanno,Prodigal
+Bacillus_anthracis_genome_0,4220,4170789,Boundary_Accuracy,0.9277251184834124,0.8571090047393365,0.8428909952606635,0.7962085308056872,0.8779620853080569,0.7656398104265403,0.8580568720379147,GENERanno,Prodigal
+Bacillus_anthracis_genome_0,4220,4170789,BP_Precision,0.9406599221881244,0.9437489884826624,0.94284625066147,0.9407161697339684,0.9393946906132786,0.9335753425804768,0.9374498108974768,GeneLM,GeneMarkS2
+Bacillus_anthracis_genome_0,4220,4170789,BP_Sensitivity,0.998986043168331,0.9563152199739664,0.985530795252409,0.9842427895537272,0.9903202967112458,0.9889131289067848,0.9874815052979184,GENERanno,Prodigal
+Bacillus_subtilis_genome_0,3129,3450590,Exact_Match_Rate,0.903163950143816,0.8363694471077021,0.8411633109619687,0.7861936720997124,0.8686481303930969,0.8111217641418984,0.8258229466283158,GENERanno,Prodigal
+Bacillus_subtilis_genome_0,3129,3450590,End_Accuracy,0.947267497603068,0.9092361776925536,0.9066794503036114,0.8798338127197187,0.928092042186002,0.8951741770533717,0.8951741770533717,GENERanno,Prodigal
+Bacillus_subtilis_genome_0,3129,3450590,Start_Accuracy,0.9475870885266858,0.91403004154682,0.9130712687759668,0.8897411313518696,0.9236177692553532,0.8935762224352828,0.907318632150847,GENERanno,Prodigal
+Bacillus_subtilis_genome_0,3129,3450590,Boundary_Accuracy,0.9050814956855224,0.8456375838926175,0.843400447427293,0.7919463087248322,0.8708852668584213,0.8159156279961649,0.829658037711729,GENERanno,Prodigal
+Bacillus_subtilis_genome_0,3129,3450590,BP_Precision,0.9265426121348624,0.9301431597535652,0.9286605894074144,0.9264659056996905,0.9281328216972836,0.9245906736533076,0.9209655876701468,GeneLM,GeneMarkS2
+Bacillus_subtilis_genome_0,3129,3450590,BP_Sensitivity,0.9988199119570856,0.9561924192674296,0.995023169950646,0.9941682436916586,0.9966275332624276,0.9944922462535392,0.993151605957242,GENERanno,Prodigal
+Campylobacter_jejuni_genome_0,891,1367442,Exact_Match_Rate,0.8215488215488216,0.7687991021324355,0.7991021324354658,0.7665544332210998,0.8080808080808081,0.7867564534231201,0.7968574635241302,GENERanno,Prodigal
+Campylobacter_jejuni_genome_0,891,1367442,End_Accuracy,0.8911335578002245,0.8608305274971941,0.8765432098765432,0.8619528619528619,0.8855218855218855,0.8787878787878788,0.8810325476992144,GENERanno,Prodigal
+Campylobacter_jejuni_genome_0,891,1367442,Start_Accuracy,0.9102132435465768,0.8866442199775533,0.8956228956228957,0.8843995510662177,0.9023569023569024,0.8888888888888888,0.9012345679012346,GENERanno,Prodigal
+Campylobacter_jejuni_genome_0,891,1367442,Boundary_Accuracy,0.8215488215488216,0.7878787878787878,0.8013468013468014,0.77665544332211,0.8103254769921436,0.7934904601571269,0.8047138047138047,GENERanno,Prodigal
+Campylobacter_jejuni_genome_0,891,1367442,BP_Precision,0.8838858590032873,0.8979679689293302,0.8879726431589684,0.886814502467001,0.8884060112302142,0.8859312328735086,0.8859797280818421,GeneLM,Prodigal
+Campylobacter_jejuni_genome_0,891,1367442,BP_Sensitivity,0.999472006856598,0.9640920784940056,0.9982807314679526,0.9972284016433604,0.99816957501671,0.99726204109571,0.9962236058275232,GENERanno,GeneMarkS2
+Carboxydothermus_hydrogenoformans_genome_0,1747,2026274,Exact_Match_Rate,0.8769318832283916,0.8391528334287349,0.8540354894104178,0.797366914710933,0.8557527189467659,0.8259874069834001,0.8397252432741843,GENERanno,Prodigal
+Carboxydothermus_hydrogenoformans_genome_0,1747,2026274,End_Accuracy,0.9301659988551804,0.9135661133371494,0.916428162564396,0.887807670291929,0.914710933028048,0.90440755580996,0.9118488838008014,GENERanno,GeneMarkS2
+Carboxydothermus_hydrogenoformans_genome_0,1747,2026274,Start_Accuracy,0.9398969662278192,0.9187178019461936,0.9244419004006867,0.8946765884373211,0.9267315397824842,0.9072696050372068,0.9141385231825988,GENERanno,Prodigal
+Carboxydothermus_hydrogenoformans_genome_0,1747,2026274,Boundary_Accuracy,0.8786491127647396,0.8494562106468231,0.8603319977103606,0.8053806525472238,0.8597595878649112,0.8322839152833429,0.8471665712650257,GENERanno,GeneMarkS2
+Carboxydothermus_hydrogenoformans_genome_0,1747,2026274,BP_Precision,0.9327683899759824,0.9355792140712068,0.9323795654184004,0.9287581467200702,0.9314824693698674,0.9269152262739392,0.92130555826947,GeneLM,GENERanno
+Carboxydothermus_hydrogenoformans_genome_0,1747,2026274,BP_Sensitivity,0.998392616200968,0.9629285081879352,0.9952933315040317,0.9936721292381978,0.9970300166709932,0.9959487216437658,0.9959112143767328,GENERanno,Prodigal
+Caulobacter_crescentus_genome_0,2624,3374441,Exact_Match_Rate,0.7736280487804879,0.7374237804878049,0.7496189024390244,0.7317073170731707,0.7526676829268293,0.7328506097560976,0.7084603658536586,GENERanno,Prodigal
+Caulobacter_crescentus_genome_0,2624,3374441,End_Accuracy,0.8753810975609756,0.8456554878048781,0.8616615853658537,0.8555640243902439,0.8612804878048781,0.8536585365853658,0.8353658536585366,GENERanno,GeneMarkS2
+Caulobacter_crescentus_genome_0,2624,3374441,Start_Accuracy,0.8860518292682927,0.859375,0.8696646341463414,0.8570884146341463,0.8727134146341463,0.8601371951219512,0.8540396341463414,GENERanno,Prodigal
+Caulobacter_crescentus_genome_0,2624,3374441,Boundary_Accuracy,0.7846798780487805,0.7480945121951219,0.758765243902439,0.743140243902439,0.760670731707317,0.7416158536585366,0.71875,GENERanno,Prodigal
+Caulobacter_crescentus_genome_0,2624,3374441,BP_Precision,0.928645339980612,0.9263742618615932,0.9256111857639752,0.9245848445361472,0.9284629327744788,0.9269399694588414,0.92722527373101,GENERanno,Prodigal
+Caulobacter_crescentus_genome_0,2624,3374441,BP_Sensitivity,0.9936087191923048,0.9617791509764136,0.9920739464699486,0.991842204382889,0.9894035782519238,0.9906251139077554,0.9870141454540174,GENERanno,GeneMarkS2
+Chlorobium_tepidum_genome_0,1586,1791577,Exact_Match_Rate,0.8575031525851198,0.6878940731399747,0.7213114754098361,0.7736443883984867,0.8020176544766708,0.7818411097099621,0.6986128625472888,GENERanno,Prodigal
+Chlorobium_tepidum_genome_0,1586,1791577,End_Accuracy,0.9148802017654476,0.8411097099621689,0.8461538461538461,0.8720050441361917,0.8883984867591425,0.8713745271122321,0.832282471626734,GENERanno,Prodigal
+Chlorobium_tepidum_genome_0,1586,1791577,Start_Accuracy,0.9312736443883984,0.8221941992433796,0.8480453972257251,0.8764186633039092,0.894703656998739,0.8896595208070618,0.8411097099621689,GENERanno,Prodigal
+Chlorobium_tepidum_genome_0,1586,1791577,Boundary_Accuracy,0.8619167717528373,0.7005044136191677,0.7238335435056746,0.7755359394703657,0.8064312736443884,0.7868852459016393,0.7061790668348046,GENERanno,Prodigal
+Chlorobium_tepidum_genome_0,1586,1791577,BP_Precision,0.9469012512545434,0.9466613939219634,0.936084150488977,0.9356444825555156,0.9455716519330816,0.9443149751691994,0.9346966205735489,GENERanno,GeneLM
+Chlorobium_tepidum_genome_0,1586,1791577,BP_Sensitivity,0.996356282760942,0.8818711113170129,0.9923000797621312,0.9939438829589796,0.9920918832961128,0.991093321693681,0.985147721811566,GENERanno,MetaGeneMark2
+Clostridium_perfringens_genome_0,2319,2538271,Exact_Match_Rate,0.94997843898232,0.931867184131091,0.9271237602414834,0.895644674428633,0.9426476929711084,0.8805519620526089,0.943078913324709,GENERanno,Glimmer3
+Clostridium_perfringens_genome_0,2319,2538271,End_Accuracy,0.9788702026735662,0.9680896938335488,0.965071151358344,0.9542906425183268,0.9741267787839586,0.940060370849504,0.9732643380767572,GENERanno,Prodigal
+Clostridium_perfringens_genome_0,2319,2538271,Start_Accuracy,0.9706770159551532,0.9547218628719276,0.956877964639931,0.9391979301423028,0.9655023717119448,0.9370418283742992,0.9655023717119448,GENERanno,Prodigal
+Clostridium_perfringens_genome_0,2319,2538271,Boundary_Accuracy,0.9517033203967228,0.9340232858990944,0.9288486416558862,0.8990944372574385,0.943078913324709,0.8835705045278137,0.9439413540319104,GENERanno,Glimmer3
+Clostridium_perfringens_genome_0,2319,2538271,BP_Precision,0.9216936636086648,0.9202606657338576,0.9221179816608024,0.9204682252826514,0.9203507716846324,0.9149875768610592,0.9182326752197127,GeneMarkS2,GENERanno
+Clostridium_perfringens_genome_0,2319,2538271,BP_Sensitivity,0.9990706272104122,0.9838512121046176,0.9970791140898668,0.9964901304864612,0.9984217603242522,0.9977342844794744,0.9970735985243498,GENERanno,Prodigal
+Colwellia_psychrerythraea_genome_0,3561,4195525,Exact_Match_Rate,0.893288402134232,0.8360011232799776,0.8708228025835439,0.8365627632687447,0.8758775624824487,0.7846110643077787,0.8418983431620332,GENERanno,Prodigal
+Colwellia_psychrerythraea_genome_0,3561,4195525,End_Accuracy,0.9441168211176636,0.911541701769166,0.9309182813816343,0.91575400168492,0.9351305812973884,0.889076102218478,0.9182813816343725,GENERanno,Prodigal
+Colwellia_psychrerythraea_genome_0,3561,4195525,Start_Accuracy,0.945240101095198,0.9098567818028644,0.9295141814097164,0.9132266217354676,0.9351305812973884,0.8899185622016288,0.9146307217073856,GENERanno,Prodigal
+Colwellia_psychrerythraea_genome_0,3561,4195525,Boundary_Accuracy,0.8955349620893007,0.8399326032013479,0.8716652625666947,0.8404942431901151,0.8775624824487503,0.7896658242066835,0.846953103060938,GENERanno,Prodigal
+Colwellia_psychrerythraea_genome_0,3561,4195525,BP_Precision,0.9283552045952912,0.9268572540946844,0.9282481145190354,0.9265507200622892,0.9259554111948922,0.9232463602368972,0.9228192053198362,GENERanno,GeneMarkS2
+Colwellia_psychrerythraea_genome_0,3561,4195525,BP_Sensitivity,0.9987891860970916,0.955540724939072,0.9972358644031438,0.9961287323994016,0.9977385428522056,0.9959347161559042,0.9945499073417512,GENERanno,Prodigal
+Dehalococcoides_mccartyi_genome_0,1027,1209256,Exact_Match_Rate,0.8792599805258033,0.7994157740993184,0.8169425511197663,0.7857838364167478,0.8490749756572541,0.7994157740993184,0.7877312560856865,GENERanno,Prodigal
+Dehalococcoides_mccartyi_genome_0,1027,1209256,End_Accuracy,0.9367088607594936,0.8958130477117819,0.9036027263875364,0.8851022395326192,0.9182083739045764,0.887049659201558,0.881207400194742,GENERanno,Prodigal
+Dehalococcoides_mccartyi_genome_0,1027,1209256,Start_Accuracy,0.9367088607594936,0.8851022395326192,0.8967867575462513,0.8851022395326192,0.9182083739045764,0.8938656280428432,0.8714703018500487,GENERanno,Prodigal
+Dehalococcoides_mccartyi_genome_0,1027,1209256,Boundary_Accuracy,0.881207400194742,0.8111002921129503,0.8266796494644596,0.7955209347614411,0.8529698149951315,0.807205452775073,0.7945472249269717,GENERanno,Prodigal
+Dehalococcoides_mccartyi_genome_0,1027,1209256,BP_Precision,0.9066257658568918,0.9022567471844144,0.9042502864155882,0.9025787145948998,0.9045925701179536,0.9030906312420284,0.9015724340220292,GENERanno,Prodigal
+Dehalococcoides_mccartyi_genome_0,1027,1209256,BP_Sensitivity,0.9976762571366196,0.9416715732648836,0.9894935398294488,0.99148815470008,0.9960694840463888,0.9930370409574152,0.9862187989970692,GENERanno,Prodigal
+Deinococcus_deserti_genome_0,1820,2201047,Exact_Match_Rate,0.8318681318681319,0.7730769230769231,0.6906593406593406,0.7664835164835165,0.7368131868131869,0.6675824175824175,0.6467032967032967,GENERanno,GeneLM
+Deinococcus_deserti_genome_0,1820,2201047,End_Accuracy,0.9137362637362636,0.8824175824175824,0.8373626373626374,0.8730769230769231,0.8532967032967033,0.817032967032967,0.8060439560439561,GENERanno,GeneLM
+Deinococcus_deserti_genome_0,1820,2201047,Start_Accuracy,0.9093406593406592,0.8747252747252747,0.8395604395604396,0.8857142857142857,0.8648351648351649,0.8252747252747252,0.8159340659340659,GENERanno,MetaGeneMark2
+Deinococcus_deserti_genome_0,1820,2201047,Boundary_Accuracy,0.8362637362637363,0.7851648351648352,0.7060439560439561,0.7807692307692308,0.7406593406593407,0.6747252747252748,0.6538461538461539,GENERanno,GeneLM
+Deinococcus_deserti_genome_0,1820,2201047,BP_Precision,0.8938178215048721,0.8926597096741621,0.8949729695114268,0.8959798178756546,0.8858272048413064,0.8825916662352454,0.8866699115643097,MetaGeneMark2,GeneMarkS2
+Deinococcus_deserti_genome_0,1820,2201047,BP_Sensitivity,0.9975329922532322,0.9518878969872064,0.9841707151187594,0.9899347901248816,0.9948983370187008,0.9914199923945286,0.9881997067759116,GENERanno,Prodigal
+Escherichia_coli_genome_0,3550,4002918,Exact_Match_Rate,0.9352112676056338,0.8591549295774648,0.8464788732394366,0.7861971830985915,0.8743661971830986,0.852112676056338,0.7949295774647888,GENERanno,Prodigal
+Escherichia_coli_genome_0,3550,4002918,End_Accuracy,0.9633802816901408,0.9050704225352112,0.903661971830986,0.872112676056338,0.9185915492957748,0.9090140845070422,0.8698591549295774,GENERanno,Prodigal
+Escherichia_coli_genome_0,3550,4002918,Start_Accuracy,0.9653521126760564,0.9109859154929576,0.9045070422535212,0.8754929577464788,0.923661971830986,0.9140845070422536,0.8791549295774648,GENERanno,Prodigal
+Escherichia_coli_genome_0,3550,4002918,Boundary_Accuracy,0.9383098591549296,0.863943661971831,0.8515492957746479,0.7952112676056338,0.8805633802816901,0.8605633802816901,0.8030985915492957,GENERanno,Prodigal
+Escherichia_coli_genome_0,3550,4002918,BP_Precision,0.9765007151180428,0.9825043854092624,0.976987379715374,0.9739084023451696,0.9775165986287112,0.9765402044296366,0.9715346803246668,GeneLM,Prodigal
+Escherichia_coli_genome_0,3550,4002918,BP_Sensitivity,0.99797172962324,0.9706426661750254,0.991415262565958,0.9901007215236484,0.9925899056638182,0.9922983683402956,0.9841423181788884,GENERanno,Prodigal
+Geobacter_sulfurreducens_genome_0,2582,3268635,Exact_Match_Rate,0.8795507358636716,0.8315259488768396,0.8582494190549961,0.8051897753679318,0.8621223857474826,0.8090627420604183,0.813710302091402,GENERanno,Prodigal
+Geobacter_sulfurreducens_genome_0,2582,3268635,End_Accuracy,0.9341595662277304,0.9120836560805576,0.919442292796282,0.8931061192873742,0.9217660728117738,0.8962044926413633,0.9004647560030984,GENERanno,Prodigal
+Geobacter_sulfurreducens_genome_0,2582,3268635,Start_Accuracy,0.941130906274206,0.9151820294345469,0.9310611928737412,0.8989155693261038,0.9341595662277304,0.9035631293570876,0.900852052672347,GENERanno,Prodigal
+Geobacter_sulfurreducens_genome_0,2582,3268635,Boundary_Accuracy,0.8838109992254066,0.8439194422927963,0.8667699457784663,0.813710302091402,0.8667699457784663,0.8168086754453912,0.8237800154918667,GENERanno,GeneMarkS2
+Geobacter_sulfurreducens_genome_0,2582,3268635,BP_Precision,0.9424768559315324,0.9419264716565368,0.9396162461196934,0.938879212406383,0.9409333678860362,0.9361896335066462,0.936513943382938,GENERanno,GeneLM
+Geobacter_sulfurreducens_genome_0,2582,3268635,BP_Sensitivity,0.9979853975742168,0.9520484850709852,0.9924332328326656,0.9921129156360377,0.9964180766589112,0.9937606982731324,0.9918134022305948,GENERanno,Prodigal
+Haemophilus_influenzae_genome_0,1475,1627581,Exact_Match_Rate,0.9220338983050848,0.8793220338983051,0.8684745762711864,0.8379661016949153,0.9057627118644068,0.8657627118644068,0.8677966101694915,GENERanno,Prodigal
+Haemophilus_influenzae_genome_0,1475,1627581,End_Accuracy,0.9572881355932203,0.9301694915254236,0.9247457627118644,0.9084745762711864,0.9484745762711864,0.9193220338983052,0.9227118644067795,GENERanno,Prodigal
+Haemophilus_influenzae_genome_0,1475,1627581,Start_Accuracy,0.9559322033898304,0.9233898305084746,0.9261016949152544,0.911186440677966,0.9444067796610168,0.9322033898305084,0.927457627118644,GENERanno,Prodigal
+Haemophilus_influenzae_genome_0,1475,1627581,Boundary_Accuracy,0.9254237288135592,0.8847457627118644,0.8752542372881356,0.8481355932203389,0.9132203389830508,0.8732203389830508,0.8759322033898305,GENERanno,Prodigal
+Haemophilus_influenzae_genome_0,1475,1627581,BP_Precision,0.971061170101522,0.9712556657210628,0.970286925203136,0.9682860513292668,0.9719132462910866,0.9688210148552668,0.9680851574040324,Prodigal,GeneLM
+Haemophilus_influenzae_genome_0,1475,1627581,BP_Sensitivity,0.9984756519030388,0.9628116818763552,0.9936322677642464,0.9925035988992252,0.9933981780323068,0.9935382632262234,0.9921644452718482,GENERanno,GeneMarkS2
+Helicobacter_pylori_genome_0,1069,1442286,Exact_Match_Rate,0.8437792329279701,0.7436856875584659,0.7633302151543498,0.7408793264733395,0.823199251637044,0.7333956969130028,0.7932647333956969,GENERanno,Prodigal
+Helicobacter_pylori_genome_0,1069,1442286,End_Accuracy,0.9045837231057062,0.8634237605238541,0.8643592142188962,0.8568755846585594,0.892422825070159,0.8447146866230122,0.8802619270346118,GENERanno,Prodigal
+Helicobacter_pylori_genome_0,1069,1442286,Start_Accuracy,0.9176800748362955,0.872778297474275,0.8765201122544434,0.8596819457436857,0.912067352666043,0.8587464920486436,0.8877455565949486,GENERanno,Prodigal
+Helicobacter_pylori_genome_0,1069,1442286,Boundary_Accuracy,0.8456501403180543,0.7736202057998129,0.7764265668849392,0.7530402245088869,0.833489242282507,0.7455565949485501,0.80355472404116,GENERanno,Prodigal
+Helicobacter_pylori_genome_0,1069,1442286,BP_Precision,0.9266909393288568,0.9286641486333614,0.9279367553435518,0.9264116802167496,0.9269766430837548,0.9253282681767055,0.9208328696774176,GeneLM,GeneMarkS2
+Helicobacter_pylori_genome_0,1069,1442286,BP_Sensitivity,0.99829992109748,0.9340193276506878,0.991487818643459,0.9914448313302632,0.9934756352068868,0.9896643245514412,0.9925867685049984,GENERanno,Prodigal
+Listeria_monocytogenes_genome_0,1598,1947092,Exact_Match_Rate,0.9155193992490612,0.8823529411764706,0.8685857321652065,0.8254067584480601,0.8829787234042553,0.781602002503129,0.8617021276595744,GENERanno,Prodigal
+Listeria_monocytogenes_genome_0,1598,1947092,End_Accuracy,0.9593241551939924,0.9392991239048812,0.9292866082603254,0.90738423028786,0.939924906132666,0.8785982478097623,0.932415519399249,GENERanno,Prodigal
+Listeria_monocytogenes_genome_0,1598,1947092,Start_Accuracy,0.9505632040050064,0.9330413016270338,0.9274092615769712,0.909261576971214,0.9336670838548186,0.8867334167709637,0.9242803504380476,GENERanno,Prodigal
+Listeria_monocytogenes_genome_0,1598,1947092,Boundary_Accuracy,0.916145181476846,0.8854818523153942,0.8692115143929913,0.8285356695869838,0.8842302878598248,0.7822277847309136,0.8692115143929913,GENERanno,GeneLM
+Listeria_monocytogenes_genome_0,1598,1947092,BP_Precision,0.7401676624667402,0.7424565727344093,0.7406768938252739,0.7397393737321569,0.7406440995992939,0.7373200947349244,0.7389814748886944,GeneLM,GeneMarkS2
+Listeria_monocytogenes_genome_0,1598,1947092,BP_Sensitivity,0.9997858344649354,0.9821492769730448,0.9987417132831936,0.9974885624305374,0.9990288080891916,0.9977094045889974,0.9967721093815805,GENERanno,Prodigal
+Methylococcus_capsulatus_genome_0,2063,2752102,Exact_Match_Rate,0.8332525448376151,0.7329132331555986,0.7765390208434318,0.7707222491517208,0.7925351429956374,0.7697527872031023,0.6926805622879302,GENERanno,Prodigal
+Methylococcus_capsulatus_genome_0,2063,2752102,End_Accuracy,0.9205041202132817,0.8599127484246243,0.887542413960252,0.881725642268541,0.8991759573436743,0.8846340281143965,0.8414929714008725,GENERanno,Prodigal
+Methylococcus_capsulatus_genome_0,2063,2752102,Start_Accuracy,0.9001454192922927,0.842462433349491,0.8730004847309744,0.868637905962191,0.8715462918080465,0.8618516723218613,0.8240426563257393,GENERanno,GeneMarkS2
+Methylococcus_capsulatus_genome_0,2063,2752102,Boundary_Accuracy,0.8395540475036355,0.7455162384876394,0.7862336403296171,0.7784779447406689,0.799321376635967,0.7779932137663597,0.7081919534658264,GENERanno,Prodigal
+Methylococcus_capsulatus_genome_0,2063,2752102,BP_Precision,0.9134279725393996,0.9099035828729516,0.9116246487391956,0.9095161705912178,0.9107567371230728,0.9075290122556195,0.902707325293164,GENERanno,GeneMarkS2
+Methylococcus_capsulatus_genome_0,2063,2752102,BP_Sensitivity,0.9966025968514248,0.9302387774871717,0.993473715727106,0.9940111231342444,0.9930950960393184,0.9922390231176024,0.9868816635429936,GENERanno,MetaGeneMark2
+Mycobacterium_tuberculosis_genome_0,2259,3185067,Exact_Match_Rate,0.7760070827799912,0.619743249225321,0.5883134130146083,0.6139884904825144,0.6657813191677734,0.6303674192120408,0.5701637892872953,GENERanno,Prodigal
+Mycobacterium_tuberculosis_genome_0,2259,3185067,End_Accuracy,0.8751660026560425,0.7826471890216911,0.7724656927844179,0.7941567065073041,0.813634351482957,0.795484727755644,0.7529880478087649,GENERanno,Prodigal
+Mycobacterium_tuberculosis_genome_0,2259,3185067,Start_Accuracy,0.8676405489154493,0.786631252766711,0.7782204515272244,0.7848605577689243,0.8127490039840638,0.7915006640106241,0.7706949977866312,GENERanno,Prodigal
+Mycobacterium_tuberculosis_genome_0,2259,3185067,Boundary_Accuracy,0.7835325365205843,0.6383355467020806,0.6046923417441346,0.6343514829570607,0.6759628154050464,0.6458610004426738,0.5900841080123949,GENERanno,Prodigal
+Mycobacterium_tuberculosis_genome_0,2259,3185067,BP_Precision,0.7870007488534346,0.8028681628228184,0.7958400586959289,0.7933037152874702,0.7897071367215138,0.7879814509368626,0.7838932849572962,GeneLM,GeneMarkS2
+Mycobacterium_tuberculosis_genome_0,2259,3185067,BP_Sensitivity,0.9948258545267652,0.911241741539503,0.9794406208723396,0.9823849859359316,0.9888894016986142,0.9833494868396804,0.9784362463960726,GENERanno,Prodigal
+Neisseria_meningitidis_genome_0,1630,1701297,Exact_Match_Rate,0.8693251533742331,0.7889570552147239,0.7840490797546013,0.7263803680981595,0.8122699386503067,0.758282208588957,0.6202453987730061,GENERanno,Prodigal
+Neisseria_meningitidis_genome_0,1630,1701297,End_Accuracy,0.9288343558282208,0.8809815950920246,0.8865030674846626,0.8576687116564418,0.8987730061349694,0.8754601226993866,0.7852760736196319,GENERanno,Prodigal
+Neisseria_meningitidis_genome_0,1630,1701297,Start_Accuracy,0.9220858895705522,0.8742331288343558,0.8705521472392638,0.841717791411043,0.8877300613496932,0.8539877300613496,0.7607361963190185,GENERanno,Prodigal
+Neisseria_meningitidis_genome_0,1630,1701297,Boundary_Accuracy,0.8705521472392638,0.7993865030674847,0.7926380368098159,0.7349693251533742,0.8233128834355828,0.7705521472392638,0.6306748466257669,GENERanno,Prodigal
+Neisseria_meningitidis_genome_0,1630,1701297,BP_Precision,0.9387170014091414,0.9448539918943472,0.9355669830769,0.9295554042760446,0.937066333339115,0.9345794654311788,0.907734394022836,GeneLM,GENERanno
+Neisseria_meningitidis_genome_0,1630,1701297,BP_Sensitivity,0.9980902805330286,0.9347051102776294,0.988851446866714,0.9872056436941932,0.9843983737113507,0.9805548355166676,0.979492116896697,GENERanno,GeneMarkS2
+Porphyromonas_gingivalis_genome_0,1560,1881485,Exact_Match_Rate,0.8198717948717948,0.5762820512820512,0.6147435897435898,0.7378205128205129,0.7615384615384615,0.7326923076923076,0.6698717948717948,GENERanno,Prodigal
+Porphyromonas_gingivalis_genome_0,1560,1881485,End_Accuracy,0.8775641025641026,0.7512820512820513,0.7564102564102564,0.8262820512820512,0.8435897435897436,0.8237179487179487,0.8,GENERanno,Prodigal
+Porphyromonas_gingivalis_genome_0,1560,1881485,Start_Accuracy,0.8762820512820513,0.7615384615384615,0.7756410256410257,0.8294871794871795,0.8423076923076923,0.8237179487179487,0.7948717948717948,GENERanno,Prodigal
+Porphyromonas_gingivalis_genome_0,1560,1881485,Boundary_Accuracy,0.823076923076923,0.6128205128205129,0.6307692307692307,0.7474358974358974,0.7647435897435897,0.7378205128205129,0.6858974358974359,GENERanno,Prodigal
+Porphyromonas_gingivalis_genome_0,1560,1881485,BP_Precision,0.932602747948042,0.9310047803117926,0.9307646942988468,0.9256229708647804,0.9209869700558668,0.9228967272269668,0.9123910684565196,GENERanno,GeneLM
+Porphyromonas_gingivalis_genome_0,1560,1881485,BP_Sensitivity,0.9910055089463908,0.8329691706285195,0.9722123747996928,0.980104545080083,0.9873817755655772,0.9822671985160658,0.9778175217979416,GENERanno,Prodigal
+Pseudomonas_aeruginosa_genome_0,2869,3733749,Exact_Match_Rate,0.8870686650400836,0.8351341930986407,0.8306029975601255,0.8020216103171837,0.8508191007319623,0.8285116765423493,0.7664691530149877,GENERanno,Prodigal
+Pseudomonas_aeruginosa_genome_0,2869,3733749,End_Accuracy,0.9379574764726384,0.9058905542000696,0.905542000697107,0.8895085395608225,0.9187870338096896,0.9037992331822936,0.8651097943534333,GENERanno,Prodigal
+Pseudomonas_aeruginosa_genome_0,2869,3733749,Start_Accuracy,0.9341233879400488,0.9013593586615546,0.9051934471941444,0.8888114325548971,0.9104217497385848,0.903102126176368,0.8675496688741722,GENERanno,Prodigal
+Pseudomonas_aeruginosa_genome_0,2869,3733749,Boundary_Accuracy,0.8881143255489717,0.8358313001045661,0.832345765074939,0.8051585918438481,0.8518647612408504,0.8313001045660509,0.7678633670268387,GENERanno,Prodigal
+Pseudomonas_aeruginosa_genome_0,2869,3733749,BP_Precision,0.661185773190063,0.6629510949239715,0.6600520129043598,0.6589251898591434,0.6626785163902916,0.6605723359144478,0.6593587802816384,GeneLM,Prodigal
+Pseudomonas_aeruginosa_genome_0,2869,3733749,BP_Sensitivity,0.9986469363634244,0.9876957449469688,0.997743286975102,0.9968886499869166,0.9967860721221484,0.9969920313336542,0.9900598567284518,GENERanno,GeneMarkS2
+Pseudomonas_fluorescens_genome_0,4336,5422003,Exact_Match_Rate,0.9026752767527676,0.8696955719557196,0.8482472324723247,0.8065036900369004,0.8724630996309963,0.8404059040590406,0.794049815498155,GENERanno,Prodigal
+Pseudomonas_fluorescens_genome_0,4336,5422003,End_Accuracy,0.9434963099630996,0.9197416974169742,0.9125922509225092,0.8952952029520295,0.9257380073800738,0.9100553505535056,0.8798431734317343,GENERanno,Prodigal
+Pseudomonas_fluorescens_genome_0,4336,5422003,Start_Accuracy,0.9471863468634686,0.926660516605166,0.9167435424354244,0.8925276752767528,0.926660516605166,0.9100553505535056,0.8826107011070111,GENERanno,GeneLM
+Pseudomonas_fluorescens_genome_0,4336,5422003,Boundary_Accuracy,0.9049815498154982,0.8733856088560885,0.8514760147601476,0.8127306273062731,0.8754612546125461,0.8443265682656826,0.7991236162361623,GENERanno,Prodigal
+Pseudomonas_fluorescens_genome_0,4336,5422003,BP_Precision,0.9363906054253404,0.9365934935599708,0.933691969933688,0.931076806140822,0.9348289076195836,0.9312983853969202,0.9354338990517892,GeneLM,GENERanno
+Pseudomonas_fluorescens_genome_0,4336,5422003,BP_Sensitivity,0.9990365184231732,0.9798222169925026,0.9966276300474196,0.9958762472097488,0.9959893050594032,0.9957882723414206,0.9845049882856944,GENERanno,GeneMarkS2
+Pseudomonas_putida_genome_0,4168,5240125,Exact_Match_Rate,0.9145873320537428,0.8807581573896354,0.8634836852207294,0.8270153550863724,0.8841170825335892,0.8534069097888676,0.8001439539347409,GENERanno,Prodigal
+Pseudomonas_putida_genome_0,4168,5240125,End_Accuracy,0.9534548944337812,0.9301823416506718,0.9220249520153552,0.90978886756238,0.9349808061420346,0.9208253358925144,0.8824376199616123,GENERanno,Prodigal
+Pseudomonas_putida_genome_0,4168,5240125,Start_Accuracy,0.9503358925143954,0.9328214971209212,0.9263435700575816,0.9040307101727448,0.9354606525911708,0.9172264875239924,0.8937140115163148,GENERanno,Prodigal
+Pseudomonas_putida_genome_0,4168,5240125,Boundary_Accuracy,0.9162667946257198,0.8845969289827256,0.8661228406909789,0.8322936660268714,0.8862763915547025,0.8572456813819578,0.8054222648752399,GENERanno,Prodigal
+Pseudomonas_putida_genome_0,4168,5240125,BP_Precision,0.9541807223357172,0.9542035873481182,0.950947949027072,0.9493714172567156,0.9538773762032626,0.9496704375761056,0.9520831737588488,GeneLM,GENERanno
+Pseudomonas_putida_genome_0,4168,5240125,BP_Sensitivity,0.9985607213568378,0.9782360153622288,0.9960468500274324,0.9955012523556211,0.9958021993750148,0.9955340760000956,0.9844114405667804,GENERanno,GeneMarkS2
+Ralstonia_solanacearum_genome_0,2495,2870776,Exact_Match_Rate,0.8957915831663327,0.8348697394789579,0.8280561122244489,0.8124248496993988,0.8605210420841684,0.8360721442885771,0.7486973947895792,GENERanno,Prodigal
+Ralstonia_solanacearum_genome_0,2495,2870776,End_Accuracy,0.9422845691382764,0.9018036072144288,0.9006012024048096,0.8957915831663327,0.9198396793587176,0.9086172344689378,0.862124248496994,GENERanno,Prodigal
+Ralstonia_solanacearum_genome_0,2495,2870776,Start_Accuracy,0.9402805611222445,0.9090180360721444,0.9098196392785572,0.8977955911823647,0.9210420841683368,0.9098196392785572,0.862124248496994,GENERanno,Prodigal
+Ralstonia_solanacearum_genome_0,2495,2870776,Boundary_Accuracy,0.8993987975951904,0.8396793587174348,0.8332665330661323,0.8188376753507014,0.8633266533066132,0.8396793587174348,0.756312625250501,GENERanno,Prodigal
+Ralstonia_solanacearum_genome_0,2495,2870776,BP_Precision,0.9386097615058316,0.9348830290260428,0.9322076161567834,0.9302683957095572,0.9365452289081788,0.9329054365025587,0.9307204264150084,GENERanno,Prodigal
+Ralstonia_solanacearum_genome_0,2495,2870776,BP_Sensitivity,0.9967590644480796,0.9610324873832023,0.9936257652983026,0.9933718269903328,0.9915796286439624,0.9927531789314108,0.9827997726050378,GENERanno,GeneMarkS2
+Roseobacter_denitrificans_genome_0,2702,3522131,Exact_Match_Rate,0.8741672834937083,0.8019985196150999,0.8201332346410066,0.7957068837897854,0.8286454478164322,0.7957068837897854,0.7453737971872687,GENERanno,Prodigal
+Roseobacter_denitrificans_genome_0,2702,3522131,End_Accuracy,0.9333826794966692,0.8993338267949667,0.9067357512953368,0.8937823834196891,0.9074759437453738,0.8856402664692821,0.8660251665433013,GENERanno,Prodigal
+Roseobacter_denitrificans_genome_0,2702,3522131,Start_Accuracy,0.932642487046632,0.9019245003700962,0.9041450777202072,0.8948926720947447,0.9111769059955588,0.9000740192450037,0.8645447816432272,GENERanno,Prodigal
+Roseobacter_denitrificans_genome_0,2702,3522131,Boundary_Accuracy,0.8767579570688379,0.8197631384159881,0.8286454478164322,0.8068097705403405,0.8345669874167283,0.805699481865285,0.7586972612879349,GENERanno,Prodigal
+Roseobacter_denitrificans_genome_0,2702,3522131,BP_Precision,0.9411360914390398,0.9436707010499094,0.9375262629470316,0.9354680596846072,0.9378111559885044,0.9343643226274878,0.9305042334468272,GeneLM,GENERanno
+Roseobacter_denitrificans_genome_0,2702,3522131,BP_Sensitivity,0.99884359781053,0.946728273309539,0.9957883451808012,0.9954141399056424,0.9964325574488854,0.9938168114701016,0.9917075770322,GENERanno,Prodigal
+Staphylococcus_epidermidis_genome_0,1760,1977914,Exact_Match_Rate,0.9420454545454544,0.8863636363636364,0.875,0.8272727272727273,0.9017045454545456,0.8164772727272728,0.8869318181818182,GENERanno,Prodigal
+Staphylococcus_epidermidis_genome_0,1760,1977914,End_Accuracy,0.9670454545454544,0.93125,0.9272727272727272,0.9028409090909092,0.9420454545454544,0.9034090909090908,0.9363636363636364,GENERanno,Prodigal
+Staphylococcus_epidermidis_genome_0,1760,1977914,Start_Accuracy,0.969318181818182,0.9306818181818182,0.9221590909090908,0.9022727272727272,0.9386363636363636,0.8948863636363636,0.9357954545454544,GENERanno,Prodigal
+Staphylococcus_epidermidis_genome_0,1760,1977914,Boundary_Accuracy,0.9431818181818182,0.8943181818181818,0.8801136363636364,0.8357954545454546,0.9039772727272728,0.8238636363636364,0.89375,GENERanno,Prodigal
+Staphylococcus_epidermidis_genome_0,1760,1977914,BP_Precision,0.9602458948694004,0.9623216242591008,0.9617910315272442,0.9594798421339892,0.96036819790613,0.9529478400071688,0.9594912907572056,GeneLM,GeneMarkS2
+Staphylococcus_epidermidis_genome_0,1760,1977914,BP_Sensitivity,0.999261343010869,0.9731995425483616,0.9860342765155612,0.98478346379064,0.9926715721714896,0.989276581287154,0.991204875439478,GENERanno,Prodigal
+Streptococcus_agalactiae_genome_0,1517,1749693,Exact_Match_Rate,0.935398813447594,0.8529993408042189,0.8694792353328938,0.8213579433091628,0.8912326961107448,0.8147659854976929,0.8661832564271589,GENERanno,Prodigal
+Streptococcus_agalactiae_genome_0,1517,1749693,End_Accuracy,0.964403427818062,0.918918918918919,0.9321028345418588,0.9096901779828608,0.951878707976269,0.9070533948582729,0.939353988134476,GENERanno,Prodigal
+Streptococcus_agalactiae_genome_0,1517,1749693,Start_Accuracy,0.967699406723797,0.92089650626236,0.931443638760712,0.9070533948582729,0.934739617666447,0.8978246539222149,0.926170072511536,GENERanno,Prodigal
+Streptococcus_agalactiae_genome_0,1517,1749693,Boundary_Accuracy,0.936717205009888,0.8688200395517469,0.8866183256427159,0.8404746209624259,0.9044166117336848,0.8272907053394858,0.8866183256427159,GENERanno,Prodigal
+Streptococcus_agalactiae_genome_0,1517,1749693,BP_Precision,0.9572420755495844,0.9574805642663684,0.9575255339109808,0.9540611040644128,0.957283869861106,0.953061202071742,0.9560450370095284,GeneMarkS2,GeneLM
+Streptococcus_agalactiae_genome_0,1517,1749693,BP_Sensitivity,0.99929644800545,0.9575068311983874,0.9893204122094562,0.9887443111448694,0.9919797358736648,0.9917334069462472,0.9887425965583676,GENERanno,Prodigal
+Streptococcus_pneumoniae_genome_0,1570,1755860,Exact_Match_Rate,0.8942675159235669,0.8197452229299363,0.824203821656051,0.7777070063694268,0.8382165605095542,0.789171974522293,0.8146496815286625,GENERanno,Prodigal
+Streptococcus_pneumoniae_genome_0,1570,1755860,End_Accuracy,0.9464968152866242,0.8904458598726115,0.9044585987261148,0.880891719745223,0.9038216560509554,0.8796178343949045,0.9019108280254776,GENERanno,GeneMarkS2
+Streptococcus_pneumoniae_genome_0,1570,1755860,Start_Accuracy,0.9356687898089172,0.8840764331210191,0.889171974522293,0.8687898089171975,0.9019108280254776,0.8802547770700637,0.8955414012738854,GENERanno,Prodigal
+Streptococcus_pneumoniae_genome_0,1570,1755860,Boundary_Accuracy,0.9012738853503184,0.8375796178343949,0.8426751592356688,0.8019108280254778,0.8547770700636943,0.8101910828025478,0.8382165605095542,GENERanno,Prodigal
+Streptococcus_pneumoniae_genome_0,1570,1755860,BP_Precision,0.948675398822878,0.9548325726495333,0.9522806208860096,0.9496022758338456,0.9511124822211096,0.9468309027905796,0.9479012993137094,GeneLM,GeneMarkS2
+Streptococcus_pneumoniae_genome_0,1570,1755860,BP_Sensitivity,0.996290706548358,0.9426884831364688,0.9789146059480824,0.9792483455400772,0.9780079277391136,0.9799192418529952,0.9799716378298952,GENERanno,Glimmer3
+Synechocystis_PCC_6803_genome_0,2637,2870462,Exact_Match_Rate,0.8297307546454304,0.6860068259385665,0.6780432309442548,0.7303754266211604,0.8278346605991658,0.7667804323094426,0.6856276071293136,GENERanno,Prodigal
+Synechocystis_PCC_6803_genome_0,2637,2870462,End_Accuracy,0.9093667045885476,0.8312476298824422,0.825938566552901,0.8551384148653773,0.9029199848312476,0.8672734167614714,0.8225255972696246,GENERanno,Prodigal
+Synechocystis_PCC_6803_genome_0,2637,2870462,Start_Accuracy,0.9048160788775124,0.8058399696624953,0.8107698141827835,0.8399696624952597,0.9021615472127418,0.8710656048540008,0.8115282518012893,GENERanno,Prodigal
+Synechocystis_PCC_6803_genome_0,2637,2870462,Boundary_Accuracy,0.8327645051194539,0.6932119833143724,0.6806977626090254,0.7337883959044369,0.8304891922639362,0.7717102768297307,0.6901782328403488,GENERanno,Prodigal
+Synechocystis_PCC_6803_genome_0,2637,2870462,BP_Precision,0.9161722246155316,0.9154358433576016,0.9164094868642312,0.9136652223675076,0.914408033928451,0.910943059528762,0.8991060944745626,GeneMarkS2,GENERanno
+Synechocystis_PCC_6803_genome_0,2637,2870462,BP_Sensitivity,0.9950157849154596,0.8824778032247074,0.9773712384974962,0.9839367321358026,0.9922406218929216,0.9901994870512134,0.9835455059150756,GENERanno,Prodigal
+Thermotoga_maritima_genome_0,1054,1673504,Exact_Match_Rate,0.8074003795066413,0.6622390891840607,0.7637571157495257,0.7343453510436433,0.8149905123339658,0.6565464895635673,0.7903225806451613,Prodigal,GENERanno
+Thermotoga_maritima_genome_0,1054,1673504,End_Accuracy,0.8870967741935484,0.8292220113851992,0.8605313092979127,0.857685009487666,0.889943074003795,0.8140417457305503,0.881404174573055,Prodigal,GENERanno
+Thermotoga_maritima_genome_0,1054,1673504,Start_Accuracy,0.8927893738140418,0.849146110056926,0.864326375711575,0.8510436432637571,0.896584440227704,0.8149905123339658,0.8908918406072106,Prodigal,GENERanno
+Thermotoga_maritima_genome_0,1054,1673504,Boundary_Accuracy,0.8102466793168881,0.7191650853889943,0.7685009487666035,0.7504743833017078,0.8178368121442126,0.6726755218216319,0.8026565464895635,Prodigal,GENERanno
+Thermotoga_maritima_genome_0,1054,1673504,BP_Precision,0.9392164944279912,0.9348972421726828,0.9380675746172276,0.936564847721445,0.9395133206499492,0.9362027810617576,0.936218775096158,Prodigal,GENERanno
+Thermotoga_maritima_genome_0,1054,1673504,BP_Sensitivity,0.9981111488230684,0.8983874553033635,0.9960639472627492,0.9952243914564888,0.9970983039180068,0.9937096057135208,0.9926776392527296,GENERanno,Prodigal
+Treponema_denticola_genome_0,1717,2217966,Exact_Match_Rate,0.8736167734420501,0.8147932440302854,0.8462434478741991,0.8066394874781596,0.8916715200931858,0.8281887012230634,0.8334304018637158,Prodigal,GENERanno
+Treponema_denticola_genome_0,1717,2217966,End_Accuracy,0.9271986022131624,0.9033197437390798,0.918462434478742,0.8957483983692487,0.935934769947583,0.9044845661036692,0.9097262667443214,Prodigal,GENERanno
+Treponema_denticola_genome_0,1717,2217966,Start_Accuracy,0.9370995923121724,0.9039021549213744,0.9178800232964472,0.9004076878276063,0.9429237041351194,0.908561444379732,0.9132207338380895,Prodigal,GENERanno
+Treponema_denticola_genome_0,1717,2217966,Boundary_Accuracy,0.8782760629004077,0.8299359347699475,0.8578916715200932,0.8206173558532324,0.8969132207338381,0.8363424577751892,0.844496214327315,Prodigal,GENERanno
+Treponema_denticola_genome_0,1717,2217966,BP_Precision,0.8490447137554852,0.8466098490733077,0.8488739954016122,0.8469304425183953,0.8483004636163457,0.8474361929347408,0.8435955577255383,GENERanno,GeneMarkS2
+Treponema_denticola_genome_0,1717,2217966,BP_Sensitivity,0.9980558764201074,0.9459513806794152,0.9944385982472228,0.9940977454117872,0.9964765014432142,0.9946103772555576,0.9940111796123114,GENERanno,Prodigal
+Treponema_pallidum_genome_0,682,947010,Exact_Match_Rate,0.6994134897360704,0.5,0.501466275659824,0.5161290322580645,0.6422287390029325,0.6304985337243402,0.5630498533724341,GENERanno,Prodigal
+Treponema_pallidum_genome_0,682,947010,End_Accuracy,0.8357771260997068,0.7360703812316716,0.7243401759530792,0.7287390029325513,0.8049853372434017,0.7991202346041055,0.7595307917888563,GENERanno,Prodigal
+Treponema_pallidum_genome_0,682,947010,Start_Accuracy,0.8401759530791789,0.7287390029325513,0.6950146627565983,0.7082111436950147,0.8049853372434017,0.7947214076246334,0.7478005865102639,GENERanno,Prodigal
+Treponema_pallidum_genome_0,682,947010,Boundary_Accuracy,0.7111436950146628,0.532258064516129,0.5278592375366569,0.5469208211143695,0.6495601173020528,0.6392961876832844,0.5703812316715543,GENERanno,Prodigal
+Treponema_pallidum_genome_0,682,947010,BP_Precision,0.8964294249432769,0.8923095361937377,0.901967025470139,0.8986144849117221,0.8918194604173413,0.8916415289079473,0.8807039440132802,GeneMarkS2,MetaGeneMark2
+Treponema_pallidum_genome_0,682,947010,BP_Sensitivity,0.9941827435824332,0.8097496330556172,0.9186270472328698,0.9203271348771396,0.9916315561609698,0.9906833085183896,0.9865481885090972,GENERanno,Prodigal
+Ureaplasma_parvum_genome_0,420,591326,Exact_Match_Rate,0.9095238095238096,0.1833333333333333,0.1880952380952381,0.85,0.1952380952380952,0.8642857142857143,0.1904761904761904,GENERanno,MetaProdigal
+Ureaplasma_parvum_genome_0,420,591326,End_Accuracy,0.95,0.2952380952380952,0.6452380952380953,0.9166666666666666,0.6785714285714286,0.9285714285714286,0.6619047619047619,GENERanno,MetaProdigal
+Ureaplasma_parvum_genome_0,420,591326,Start_Accuracy,0.9452380952380952,0.3119047619047619,0.6523809523809524,0.9142857142857144,0.6857142857142857,0.9214285714285714,0.6642857142857143,GENERanno,MetaProdigal
+Ureaplasma_parvum_genome_0,420,591326,Boundary_Accuracy,0.9095238095238096,0.1952380952380952,0.4380952380952381,0.8571428571428571,0.4738095238095238,0.8690476190476191,0.4595238095238095,GENERanno,MetaProdigal
+Ureaplasma_parvum_genome_0,420,591326,BP_Precision,0.8572534866454831,0.855423599909739,0.8776167701231301,0.8558665577024108,0.8650457527392075,0.8564016234328877,0.8569033333589411,GeneMarkS2,Prodigal
+Ureaplasma_parvum_genome_0,420,591326,BP_Sensitivity,0.9977930955175318,0.1730923382364381,0.7292373411620663,0.9917947122230376,0.7612974907242367,0.9945190977565674,0.7545228858531504,GENERanno,MetaProdigal
+Wolbachia_endosymbiont_genome_0,870,945369,Exact_Match_Rate,0.7666666666666667,0.6666666666666666,0.6333333333333333,0.6597701149425287,0.7172413793103448,0.6931034482758621,0.6344827586206897,GENERanno,Prodigal
+Wolbachia_endosymbiont_genome_0,870,945369,End_Accuracy,0.860919540229885,0.8057471264367816,0.803448275862069,0.8103448275862069,0.8505747126436781,0.832183908045977,0.8057471264367816,GENERanno,Prodigal
+Wolbachia_endosymbiont_genome_0,870,945369,Start_Accuracy,0.8551724137931035,0.7896551724137931,0.7724137931034483,0.7942528735632184,0.8310344827586207,0.8103448275862069,0.7827586206896552,GENERanno,Prodigal
+Wolbachia_endosymbiont_genome_0,870,945369,Boundary_Accuracy,0.7666666666666667,0.6839080459770115,0.6632183908045977,0.6839080459770115,0.7390804597701149,0.7137931034482758,0.664367816091954,GENERanno,Prodigal
+Wolbachia_endosymbiont_genome_0,870,945369,BP_Precision,0.8762994422498102,0.8756462059695949,0.8774982254424837,0.8746184846343373,0.8696007496533976,0.8714307003627542,0.854319100345312,GeneMarkS2,GENERanno
+Wolbachia_endosymbiont_genome_0,870,945369,BP_Sensitivity,0.9934988348464991,0.8827727585736364,0.96374537349966,0.9687730399452488,0.9826120805738288,0.9773009269396394,0.9706527292517524,GENERanno,Prodigal

results/bacteria_plasmid_annotation_details.csv

@@ -0,0 +1,97 @@
+species_name,cds_number,cds_bp,metric,GENERanno,GeneLM,GeneMarkS2,MetaGeneMark2,Prodigal,MetaProdigal,Glimmer3,best_model,second_best_model
+Bacillus_anthracis_plasmid_1,92,98559,Exact_Match_Rate,0.75,0.5869565217391305,0.5869565217391305,0.5760869565217391,0.5978260869565217,0.4673913043478261,0.5652173913043478,GENERanno,Prodigal
+Bacillus_anthracis_plasmid_1,92,98559,End_Accuracy,0.8478260869565217,0.7608695652173914,0.7717391304347826,0.7391304347826086,0.75,0.6956521739130435,0.782608695652174,GENERanno,Glimmer3
+Bacillus_anthracis_plasmid_1,92,98559,Start_Accuracy,0.8478260869565217,0.7391304347826086,0.7282608695652174,0.75,0.782608695652174,0.6739130434782609,0.75,GENERanno,Prodigal
+Bacillus_anthracis_plasmid_1,92,98559,Boundary_Accuracy,0.75,0.6304347826086957,0.6086956521739131,0.5978260869565217,0.6304347826086957,0.5,0.6304347826086957,GENERanno,GeneLM
+Bacillus_anthracis_plasmid_1,92,98559,BP_Precision,0.7083857260547197,0.7130811041594824,0.7150623770871457,0.715298470683681,0.6994494366413442,0.6965991789855551,0.689518299729398,MetaGeneMark2,GeneMarkS2
+Bacillus_anthracis_plasmid_1,92,98559,BP_Sensitivity,0.9945819255471342,0.8811879178968942,0.9554987367972484,0.957193153339624,0.9706165849897016,0.9624488884830408,0.9746750677259308,GENERanno,Glimmer3
+Bacillus_anthracis_plasmid_2,57,52129,Exact_Match_Rate,0.7017543859649122,0.5087719298245614,0.6140350877192983,0.5964912280701754,0.6140350877192983,0.5614035087719298,0.631578947368421,GENERanno,Glimmer3
+Bacillus_anthracis_plasmid_2,57,52129,End_Accuracy,0.8421052631578947,0.631578947368421,0.7543859649122807,0.7719298245614035,0.7719298245614035,0.7719298245614035,0.7719298245614035,GENERanno,MetaGeneMark2
+Bacillus_anthracis_plasmid_2,57,52129,Start_Accuracy,0.7894736842105263,0.7017543859649122,0.7543859649122807,0.7192982456140351,0.7192982456140351,0.7017543859649122,0.7192982456140351,GENERanno,GeneMarkS2
+Bacillus_anthracis_plasmid_2,57,52129,Boundary_Accuracy,0.7017543859649122,0.5789473684210527,0.6140350877192983,0.6140350877192983,0.6140350877192983,0.5964912280701754,0.631578947368421,GENERanno,Glimmer3
+Bacillus_anthracis_plasmid_2,57,52129,BP_Precision,0.7166638851802403,0.6964957035445757,0.7176202634480358,0.7172550839836385,0.7059031210281034,0.699090018199636,0.6889229764085958,GeneMarkS2,MetaGeneMark2
+Bacillus_anthracis_plasmid_2,57,52129,BP_Sensitivity,0.9885284582478084,0.7961019777858773,0.948934374340578,0.9485890770972012,0.9588712616777608,0.957931285848568,0.930480155000096,GENERanno,Prodigal
+Clostridium_perfringens_plasmid_1,29,33477,Exact_Match_Rate,0.896551724137931,0.7241379310344828,0.7586206896551724,0.6896551724137931,0.7241379310344828,0.7586206896551724,0.7931034482758621,GENERanno,Glimmer3
+Clostridium_perfringens_plasmid_1,29,33477,End_Accuracy,0.9310344827586208,0.7931034482758621,0.8620689655172413,0.8620689655172413,0.8620689655172413,0.896551724137931,0.896551724137931,GENERanno,MetaProdigal
+Clostridium_perfringens_plasmid_1,29,33477,Start_Accuracy,0.9310344827586208,0.7931034482758621,0.896551724137931,0.8275862068965517,0.8275862068965517,0.9310344827586208,0.896551724137931,GENERanno,MetaProdigal
+Clostridium_perfringens_plasmid_1,29,33477,Boundary_Accuracy,0.896551724137931,0.7241379310344828,0.7586206896551724,0.6896551724137931,0.7241379310344828,0.8275862068965517,0.8620689655172413,GENERanno,Glimmer3
+Clostridium_perfringens_plasmid_1,29,33477,BP_Precision,0.720377407375421,0.7095666205624712,0.7195366005514542,0.716358024691358,0.7115873753124101,0.7160348583877996,0.7107423269093505,GENERanno,GeneMarkS2
+Clostridium_perfringens_plasmid_1,29,33477,BP_Sensitivity,0.9966544194521612,0.9194670968127372,0.9666039370313948,0.970636556441736,0.961047883621591,0.9817486632613436,0.9518176658601428,GENERanno,MetaProdigal
+Deinococcus_deserti_plasmid_1,163,205806,Exact_Match_Rate,0.7361963190184049,0.6809815950920245,0.7055214723926381,0.6809815950920245,0.6503067484662577,0.6073619631901841,0.6441717791411042,GENERanno,GeneMarkS2
+Deinococcus_deserti_plasmid_1,163,205806,End_Accuracy,0.8650306748466258,0.8650306748466258,0.8773006134969326,0.852760736196319,0.8220858895705522,0.803680981595092,0.8404907975460123,GeneMarkS2,GENERanno
+Deinococcus_deserti_plasmid_1,163,205806,Start_Accuracy,0.8466257668711656,0.7975460122699386,0.7914110429447853,0.7852760736196319,0.7791411042944786,0.754601226993865,0.7668711656441718,GENERanno,GeneLM
+Deinococcus_deserti_plasmid_1,163,205806,Boundary_Accuracy,0.754601226993865,0.7055214723926381,0.7177914110429447,0.6871165644171779,0.656441717791411,0.6134969325153374,0.656441717791411,GENERanno,GeneMarkS2
+Deinococcus_deserti_plasmid_1,163,205806,BP_Precision,0.8716041216567376,0.8670261215036685,0.8683861089364573,0.8586440706950655,0.817570859657812,0.8268449525364907,0.8117772815055592,GENERanno,GeneMarkS2
+Deinococcus_deserti_plasmid_1,163,205806,BP_Sensitivity,0.9860062388851636,0.9204153426042,0.9755303538283626,0.9758801978562336,0.9865504407062964,0.9840092125594004,0.9926192628008902,Glimmer3,Prodigal
+Deinococcus_deserti_plasmid_2,162,245417,Exact_Match_Rate,0.808641975308642,0.7098765432098766,0.7160493827160493,0.7530864197530864,0.7345679012345679,0.7160493827160493,0.6851851851851852,GENERanno,MetaGeneMark2
+Deinococcus_deserti_plasmid_2,162,245417,End_Accuracy,0.9074074074074074,0.8580246913580247,0.8888888888888888,0.8827160493827161,0.8580246913580247,0.845679012345679,0.8518518518518519,GENERanno,GeneMarkS2
+Deinococcus_deserti_plasmid_2,162,245417,Start_Accuracy,0.9012345679012346,0.8271604938271605,0.8333333333333334,0.8641975308641975,0.8641975308641975,0.8395061728395061,0.8333333333333334,GENERanno,MetaGeneMark2
+Deinococcus_deserti_plasmid_2,162,245417,Boundary_Accuracy,0.808641975308642,0.7283950617283951,0.7407407407407407,0.7716049382716049,0.7469135802469136,0.7283950617283951,0.7037037037037037,GENERanno,MetaGeneMark2
+Deinococcus_deserti_plasmid_2,162,245417,BP_Precision,0.9126740812018408,0.9101430720229984,0.9134357317307946,0.9116588119451898,0.903091747897909,0.9025569426600224,0.8992241749455886,GeneMarkS2,GENERanno
+Deinococcus_deserti_plasmid_2,162,245417,BP_Sensitivity,0.9971110395775352,0.9442988872001532,0.985999339899029,0.9884237848233822,0.9890635123076232,0.9904122371310872,0.9898988252647536,GENERanno,MetaProdigal
+Deinococcus_deserti_plasmid_3,250,283855,Exact_Match_Rate,0.736,0.688,0.704,0.728,0.684,0.684,0.64,GENERanno,MetaGeneMark2
+Deinococcus_deserti_plasmid_3,250,283855,End_Accuracy,0.852,0.8,0.836,0.856,0.816,0.824,0.788,MetaGeneMark2,GENERanno
+Deinococcus_deserti_plasmid_3,250,283855,Start_Accuracy,0.864,0.836,0.824,0.836,0.816,0.808,0.788,GENERanno,GeneLM
+Deinococcus_deserti_plasmid_3,250,283855,Boundary_Accuracy,0.748,0.696,0.708,0.732,0.684,0.684,0.652,GENERanno,MetaGeneMark2
+Deinococcus_deserti_plasmid_3,250,283855,BP_Precision,0.9086521151020328,0.9013635383413406,0.8991658853577317,0.8961461219060165,0.8760190917666756,0.8775312158342969,0.8580316199911565,GENERanno,GeneLM
+Deinococcus_deserti_plasmid_3,250,283855,BP_Sensitivity,0.986848919342622,0.8982262070423279,0.9797995455426186,0.9777844321924928,0.9879938701097392,0.9811946240157828,0.977576579591693,Prodigal,GENERanno
+Ralstonia_solanacearum_plasmid_1,1158,1633722,Exact_Match_Rate,0.8341968911917098,0.7668393782383419,0.7763385146804835,0.7452504317789291,0.7797927461139896,0.7728842832469776,0.6804835924006909,GENERanno,Prodigal
+Ralstonia_solanacearum_plasmid_1,1158,1633722,End_Accuracy,0.9058721934369602,0.8523316062176166,0.8765112262521589,0.8540587219343696,0.8713298791018999,0.8592400690846287,0.812607944732297,GENERanno,GeneMarkS2
+Ralstonia_solanacearum_plasmid_1,1158,1633722,Start_Accuracy,0.9067357512953368,0.8670120898100173,0.8747841105354058,0.8618307426597582,0.8808290155440415,0.8842832469775475,0.8186528497409327,GENERanno,MetaProdigal
+Ralstonia_solanacearum_plasmid_1,1158,1633722,Boundary_Accuracy,0.8393782383419689,0.7728842832469776,0.7832469775474957,0.7504317789291882,0.7875647668393783,0.7823834196891192,0.687392055267703,GENERanno,Prodigal
+Ralstonia_solanacearum_plasmid_1,1158,1633722,BP_Precision,0.9038514665411176,0.9009364634000508,0.8965236514757217,0.8947422551012904,0.9012593273944058,0.8966714585990375,0.8877150870510885,GENERanno,Prodigal
+Ralstonia_solanacearum_plasmid_1,1158,1633722,BP_Sensitivity,0.9953070351014432,0.9361390738448768,0.9908760486790288,0.9904702268807056,0.9877800507063014,0.9880695736483932,0.9837958967315124,GENERanno,GeneMarkS2
+Roseobacter_denitrificans_plasmid_1,59,81518,Exact_Match_Rate,0.7627118644067796,0.6949152542372882,0.7288135593220338,0.7288135593220338,0.6610169491525424,0.711864406779661,0.6271186440677966,GENERanno,GeneMarkS2
+Roseobacter_denitrificans_plasmid_1,59,81518,End_Accuracy,0.847457627118644,0.8135593220338984,0.864406779661017,0.847457627118644,0.7796610169491526,0.8135593220338984,0.7457627118644068,GeneMarkS2,GENERanno
+Roseobacter_denitrificans_plasmid_1,59,81518,Start_Accuracy,0.8813559322033898,0.847457627118644,0.8305084745762712,0.847457627118644,0.864406779661017,0.847457627118644,0.847457627118644,GENERanno,Prodigal
+Roseobacter_denitrificans_plasmid_1,59,81518,Boundary_Accuracy,0.7627118644067796,0.711864406779661,0.7457627118644068,0.7457627118644068,0.6779661016949152,0.7288135593220338,0.6610169491525424,GENERanno,GeneMarkS2
+Roseobacter_denitrificans_plasmid_1,59,81518,BP_Precision,0.9016927011258844,0.8992354990297617,0.887440124824057,0.8825098673780655,0.864974967570407,0.8719953821187797,0.8593808560077956,GENERanno,GeneLM
+Roseobacter_denitrificans_plasmid_1,59,81518,BP_Sensitivity,0.9991535611766726,0.9436688829460976,0.9977305625751368,0.9901739493118084,0.98976913074413,0.9821634485635076,0.9845064893643122,GENERanno,GeneMarkS2
+Roseobacter_denitrificans_plasmid_2,36,51803,Exact_Match_Rate,0.8333333333333334,0.6666666666666666,0.7777777777777778,0.6388888888888888,0.6944444444444444,0.6666666666666666,0.6111111111111112,GENERanno,GeneMarkS2
+Roseobacter_denitrificans_plasmid_2,36,51803,End_Accuracy,0.8888888888888888,0.7777777777777778,0.8611111111111112,0.75,0.75,0.8055555555555556,0.6666666666666666,GENERanno,GeneMarkS2
+Roseobacter_denitrificans_plasmid_2,36,51803,Start_Accuracy,0.9166666666666666,0.7777777777777778,0.8333333333333334,0.8333333333333334,0.8611111111111112,0.8333333333333334,0.8333333333333334,GENERanno,Prodigal
+Roseobacter_denitrificans_plasmid_2,36,51803,Boundary_Accuracy,0.8611111111111112,0.6666666666666666,0.7777777777777778,0.6666666666666666,0.6944444444444444,0.6944444444444444,0.6111111111111112,GENERanno,GeneMarkS2
+Roseobacter_denitrificans_plasmid_2,36,51803,BP_Precision,0.8578180910376966,0.8853028620553784,0.8608606934385924,0.8537858139998671,0.8486119597707793,0.849796308818921,0.8439161400341058,GeneLM,GeneMarkS2
+Roseobacter_denitrificans_plasmid_2,36,51803,BP_Sensitivity,0.9949616817558828,0.9541918421713028,0.993571800860954,0.991718626334382,0.9919502731502036,0.9946142115321508,0.9744223307530452,GENERanno,MetaProdigal
+Staphylococcus_epidermidis_plasmid_1,18,13308,Exact_Match_Rate,0.8888888888888888,0.7222222222222222,0.7777777777777778,0.6111111111111112,0.6111111111111112,0.6666666666666666,0.7222222222222222,GENERanno,GeneMarkS2
+Staphylococcus_epidermidis_plasmid_1,18,13308,End_Accuracy,0.8888888888888888,0.7777777777777778,0.8333333333333334,0.7222222222222222,0.8333333333333334,0.7777777777777778,0.8333333333333334,GENERanno,GeneMarkS2
+Staphylococcus_epidermidis_plasmid_1,18,13308,Start_Accuracy,1.0,0.7777777777777778,0.7777777777777778,0.7222222222222222,0.6666666666666666,0.7222222222222222,0.7777777777777778,GENERanno,GeneLM
+Staphylococcus_epidermidis_plasmid_1,18,13308,Boundary_Accuracy,0.8888888888888888,0.7222222222222222,0.7777777777777778,0.6111111111111112,0.6111111111111112,0.6666666666666666,0.7222222222222222,GENERanno,GeneMarkS2
+Staphylococcus_epidermidis_plasmid_1,18,13308,BP_Precision,0.8745809505028594,0.8673946957878315,0.8712201311059421,0.8647739221871714,0.8341882619412431,0.8398368456832087,0.8537612838515547,GENERanno,GeneMarkS2
+Staphylococcus_epidermidis_plasmid_1,18,13308,BP_Sensitivity,0.9997745716862038,0.8773669972948602,0.9287646528403968,0.9269612263300272,0.9409377817853922,0.9283137962128044,0.9594229035166816,GENERanno,Glimmer3
+Staphylococcus_epidermidis_plasmid_2,4,3567,Exact_Match_Rate,1.0,0.5,1.0,1.0,1.0,1.0,0.5,GENERanno,GeneMarkS2
+Staphylococcus_epidermidis_plasmid_2,4,3567,End_Accuracy,1.0,0.5,1.0,1.0,1.0,1.0,0.5,GENERanno,GeneMarkS2
+Staphylococcus_epidermidis_plasmid_2,4,3567,Start_Accuracy,1.0,0.75,1.0,1.0,1.0,1.0,0.5,GENERanno,GeneMarkS2
+Staphylococcus_epidermidis_plasmid_2,4,3567,Boundary_Accuracy,1.0,0.5,1.0,1.0,1.0,1.0,0.5,GENERanno,GeneMarkS2
+Staphylococcus_epidermidis_plasmid_2,4,3567,BP_Precision,1.0,1.0,1.0,1.0,0.9721995094031072,0.9721995094031072,1.0,GENERanno,GeneLM
+Staphylococcus_epidermidis_plasmid_2,4,3567,BP_Sensitivity,1.0,0.8973927670311186,1.0,1.0,1.0,1.0,0.6131202691337259,GENERanno,GeneMarkS2
+Streptococcus_agalactiae_plasmid_1,5,1971,Exact_Match_Rate,0.6,0.4,0.4,0.2,0.2,0.2,0.2,GENERanno,GeneLM
+Streptococcus_agalactiae_plasmid_1,5,1971,End_Accuracy,1.0,0.6,0.8,0.6,0.6,0.6,0.4,GENERanno,GeneMarkS2
+Streptococcus_agalactiae_plasmid_1,5,1971,Start_Accuracy,0.6,0.6,0.4,0.4,0.4,0.4,0.4,GENERanno,GeneLM
+Streptococcus_agalactiae_plasmid_1,5,1971,Boundary_Accuracy,0.6,0.4,0.4,0.2,0.2,0.2,0.2,GENERanno,GeneLM
+Streptococcus_agalactiae_plasmid_1,5,1971,BP_Precision,0.6241291956934769,0.8955014058106842,0.6168495803744352,0.6109335038363172,0.5702775290957923,0.5702775290957923,0.5068382944489139,GeneLM,GENERanno
+Streptococcus_agalactiae_plasmid_1,5,1971,BP_Sensitivity,1.0,0.969558599695586,0.969558599695586,0.969558599695586,0.969558599695586,0.969558599695586,0.958904109589041,GENERanno,GeneLM
+Synechocystis_PCC_6803_plasmid_1,59,59998,Exact_Match_Rate,0.864406779661017,0.6779661016949152,0.7288135593220338,0.6610169491525424,0.7796610169491526,0.8135593220338984,0.7457627118644068,GENERanno,MetaProdigal
+Synechocystis_PCC_6803_plasmid_1,59,59998,End_Accuracy,0.9322033898305084,0.8135593220338984,0.7966101694915254,0.7627118644067796,0.847457627118644,0.8813559322033898,0.7796610169491526,GENERanno,MetaProdigal
+Synechocystis_PCC_6803_plasmid_1,59,59998,Start_Accuracy,0.9322033898305084,0.7457627118644068,0.8813559322033898,0.8135593220338984,0.864406779661017,0.8983050847457628,0.9152542372881356,GENERanno,Glimmer3
+Synechocystis_PCC_6803_plasmid_1,59,59998,Boundary_Accuracy,0.864406779661017,0.6779661016949152,0.7457627118644068,0.6610169491525424,0.7796610169491526,0.8305084745762712,0.7457627118644068,GENERanno,MetaProdigal
+Synechocystis_PCC_6803_plasmid_1,59,59998,BP_Precision,0.7572311433058102,0.7596025811738195,0.761343393062978,0.7565867290569962,0.7235200669925987,0.7404711454568117,0.7052797573189522,GeneMarkS2,GeneLM
+Synechocystis_PCC_6803_plasmid_1,59,59998,BP_Sensitivity,0.9965998866628888,0.8652288409613654,0.9687656255208508,0.970165672189073,0.9792326410880364,0.9901663388779626,0.9765158838627954,GENERanno,MetaProdigal
+Synechocystis_PCC_6803_plasmid_2,31,30228,Exact_Match_Rate,0.8387096774193549,0.5483870967741935,0.7096774193548387,0.7419354838709677,0.6451612903225806,0.7741935483870968,0.6451612903225806,GENERanno,MetaProdigal
+Synechocystis_PCC_6803_plasmid_2,31,30228,End_Accuracy,0.935483870967742,0.8064516129032258,0.8064516129032258,0.8709677419354839,0.8064516129032258,0.9032258064516128,0.7741935483870968,GENERanno,MetaProdigal
+Synechocystis_PCC_6803_plasmid_2,31,30228,Start_Accuracy,0.9032258064516128,0.6451612903225806,0.9032258064516128,0.8709677419354839,0.7096774193548387,0.8387096774193549,0.7419354838709677,GENERanno,GeneMarkS2
+Synechocystis_PCC_6803_plasmid_2,31,30228,Boundary_Accuracy,0.8709677419354839,0.5483870967741935,0.7419354838709677,0.7741935483870968,0.6451612903225806,0.8064516129032258,0.6774193548387096,GENERanno,MetaProdigal
+Synechocystis_PCC_6803_plasmid_2,31,30228,BP_Precision,0.7894806187251311,0.7790096357751405,0.8084540669596831,0.8029971648440665,0.7512587320416502,0.7825093259076341,0.7463784203807515,GeneMarkS2,MetaGeneMark2
+Synechocystis_PCC_6803_plasmid_2,31,30228,BP_Sensitivity,0.9911340479026068,0.6927021304750562,0.9857747783511976,0.9838229456133386,0.9428013762074896,0.9854108773322748,0.8897379912663755,GENERanno,GeneMarkS2
+Synechocystis_PCC_6803_plasmid_3,82,81216,Exact_Match_Rate,0.8048780487804879,0.5365853658536586,0.5975609756097561,0.6951219512195121,0.7317073170731707,0.6951219512195121,0.6585365853658537,GENERanno,Prodigal
+Synechocystis_PCC_6803_plasmid_3,82,81216,End_Accuracy,0.8902439024390244,0.7317073170731707,0.7195121951219512,0.7926829268292683,0.8170731707317073,0.7804878048780488,0.7439024390243902,GENERanno,Prodigal
+Synechocystis_PCC_6803_plasmid_3,82,81216,Start_Accuracy,0.8780487804878049,0.7317073170731707,0.7804878048780488,0.8170731707317073,0.8292682926829268,0.8292682926829268,0.8292682926829268,GENERanno,Prodigal
+Synechocystis_PCC_6803_plasmid_3,82,81216,Boundary_Accuracy,0.8170731707317073,0.5365853658536586,0.6097560975609756,0.7073170731707317,0.7317073170731707,0.6951219512195121,0.6707317073170732,GENERanno,Prodigal
+Synechocystis_PCC_6803_plasmid_3,82,81216,BP_Precision,0.8020683740226584,0.8148320137453853,0.8088711112972639,0.7931193412265968,0.7960673261008296,0.797522773051138,0.7702667070324326,GeneLM,GeneMarkS2
+Synechocystis_PCC_6803_plasmid_3,82,81216,BP_Sensitivity,0.9902605397951144,0.8642139479905437,0.951142631993696,0.9534697596532704,0.9830082742316784,0.979905437352246,0.9711510047281324,GENERanno,Prodigal
+Synechocystis_PCC_6803_plasmid_4,53,62357,Exact_Match_Rate,0.6792452830188679,0.5660377358490566,0.5283018867924528,0.5283018867924528,0.6226415094339622,0.6415094339622641,0.4716981132075472,GENERanno,MetaProdigal
+Synechocystis_PCC_6803_plasmid_4,53,62357,End_Accuracy,0.9056603773584906,0.8113207547169812,0.8679245283018868,0.8113207547169812,0.8867924528301887,0.8301886792452831,0.7924528301886793,GENERanno,Prodigal
+Synechocystis_PCC_6803_plasmid_4,53,62357,Start_Accuracy,0.6981132075471698,0.6226415094339622,0.5471698113207547,0.5660377358490566,0.6792452830188679,0.7169811320754716,0.5283018867924528,MetaProdigal,GENERanno
+Synechocystis_PCC_6803_plasmid_4,53,62357,Boundary_Accuracy,0.6792452830188679,0.5660377358490566,0.5471698113207547,0.5471698113207547,0.6415094339622641,0.6415094339622641,0.4716981132075472,GENERanno,Prodigal
+Synechocystis_PCC_6803_plasmid_4,53,62357,BP_Precision,0.6730769230769231,0.6488710878829692,0.6755387979117398,0.6773249645405912,0.6713363816194831,0.6610218478039799,0.6574351351942119,MetaGeneMark2,GeneMarkS2
+Synechocystis_PCC_6803_plasmid_4,53,62357,BP_Sensitivity,0.9951569190307424,0.8521577369020319,0.9711499911798194,0.9725772567634748,0.9959747903202528,0.9902978013695336,0.9646711676315408,Prodigal,GENERanno