transformers pytorch bert token-classification en autotrain_compatible endpoints_compatible region:us
---
language:
- en
pipeline_tag: token-classification
---

Named Entity Recognition (NER) model to recognize cell line entities.

Please cite our work:

```
@article{NILNKER2022,
  title = {NILINKER: Attention-based approach to NIL Entity Linking},
  journal = {Journal of Biomedical Informatics},
  volume = {132},
  pages = {104137},
  year = {2022},
  issn = {1532-0464},
  doi = {https://doi.org/10.1016/j.jbi.2022.104137},
  url = {https://www.sciencedirect.com/science/article/pii/S1532046422001526},
  author = {Pedro Ruas and Francisco M. Couto},
}
```

[PubMedBERT](https://huggingface.co/microsoft/BiomedNLP-PubMedBERT-base-uncased-abstract-fulltext) fine-tuned on the following datasets:
- [CellFinder](http://cellfinder.org/about/annotation/): entity type "CellLine"
- [JNLPBA](http://www.geniaproject.org/genia-corpus/term-corpus): entity type "cell_line"