#ifndef INCLUDED_SDSL_LCP_BYTE
#define INCLUDED_SDSL_LCP_BYTE

#include <algorithm> 
#include <cassert>
#include <iomanip>
#include <iostream>
#include <iterator>
#include <utility> 
#include <vector>

#include <sdsl/int_vector.hpp>
#include <sdsl/iterators.hpp>
#include <sdsl/lcp.hpp>

namespace sdsl
{

template <uint8_t t_width = 0>
class lcp_byte
{
  public:
    typedef typename int_vector<t_width>::value_type value_type;
    typedef random_access_const_iterator<lcp_byte> const_iterator;
    typedef const_iterator iterator;
    typedef const value_type const_reference;
    typedef const_reference reference;
    typedef const_reference * pointer;
    typedef const pointer const_pointer;
    typedef int_vector<>::size_type size_type;
    typedef ptrdiff_t difference_type;

    typedef lcp_plain_tag lcp_category;
    typedef lcp_tag index_tag;

    enum
    {
        fast_access = 0,
        text_order = 0,
        sa_order = 1
    }; 

    template <class Cst>
    using type = lcp_byte;

  private:
    int_vector<8> m_small_lcp;         
    int_vector<t_width> m_big_lcp;     
    int_vector<t_width> m_big_lcp_idx; 

    typedef std::pair<size_type, size_type> tPII;
    typedef std::vector<tPII> tVPII;

  public:

    lcp_byte() = default;
    lcp_byte(const lcp_byte &) = default;
    lcp_byte(lcp_byte &&) = default;
    lcp_byte & operator=(const lcp_byte &) = default;
    lcp_byte & operator=(lcp_byte &&) = default;

    lcp_byte(cache_config & config)
    {
        std::string lcp_file = cache_file_name(conf::KEY_LCP, config);
        int_vector_buffer<> lcp_buf(lcp_file);
        m_small_lcp = int_vector<8>(lcp_buf.size());
        size_type l = 0, max_l = 0, max_big_idx = 0, big_sum = 0;

        for (size_type i = 0; i < m_small_lcp.size(); ++i)
        {
            if ((l = lcp_buf[i]) < 255) { m_small_lcp[i] = l; }
            else
            {
                m_small_lcp[i] = 255;
                if (l > max_l) max_l = l;
                max_big_idx = i;
                ++big_sum;
            }
        }
        m_big_lcp = int_vector<>(big_sum, 0, bits::hi(max_l) + 1);
        m_big_lcp_idx = int_vector<>(big_sum, 0, bits::hi(max_big_idx) + 1);

        for (size_type i = 0, ii = 0; i < m_small_lcp.size(); ++i)
        {
            if ((l = lcp_buf[i]) >= 255)
            {
                m_big_lcp[ii] = l;
                m_big_lcp_idx[ii] = i;
                ++ii;
            }
        }
    }

    size_type size() const { return m_small_lcp.size(); }

    static size_type max_size() { return int_vector<8>::max_size(); }

    bool empty() const { return m_small_lcp.empty(); }

    const_iterator begin() const { return const_iterator(this, 0); }

    const_iterator end() const { return const_iterator(this, size()); }

    inline value_type operator[](size_type i) const
    {
        if (m_small_lcp[i] != 255) { return m_small_lcp[i]; }
        else
        {
            size_type idx = lower_bound(m_big_lcp_idx.begin(), m_big_lcp_idx.end(), i) - m_big_lcp_idx.begin();
            return m_big_lcp[idx];
        }
    }

    size_type serialize(std::ostream & out, structure_tree_node * v = nullptr, std::string name = "") const
    {
        structure_tree_node * child = structure_tree::add_child(v, name, util::class_name(*this));
        size_type written_bytes = 0;
        written_bytes += m_small_lcp.serialize(out, child, "small_lcp");
        written_bytes += m_big_lcp.serialize(out, child, "large_lcp");
        written_bytes += m_big_lcp_idx.serialize(out, child, "large_lcp_idx");
        structure_tree::add_size(child, written_bytes);
        return written_bytes;
    }

    void load(std::istream & in)
    {
        m_small_lcp.load(in);
        m_big_lcp.load(in);
        m_big_lcp_idx.load(in);
    }

    template <typename archive_t>
    void CEREAL_SAVE_FUNCTION_NAME(archive_t & ar) const
    {
        ar(CEREAL_NVP(m_small_lcp));
        ar(CEREAL_NVP(m_big_lcp));
        ar(CEREAL_NVP(m_big_lcp_idx));
    }

    template <typename archive_t>
    void CEREAL_LOAD_FUNCTION_NAME(archive_t & ar)
    {
        ar(CEREAL_NVP(m_small_lcp));
        ar(CEREAL_NVP(m_big_lcp));
        ar(CEREAL_NVP(m_big_lcp_idx));
    }

    bool operator==(lcp_byte const & other) const noexcept
    {
        return (m_small_lcp == other.m_small_lcp) && (m_big_lcp == other.m_big_lcp) &&
               (m_big_lcp_idx == other.m_big_lcp_idx);
    }

    bool operator!=(lcp_byte const & other) const noexcept { return !(*this == other); }
};

} 
#endif
// Copyright (c) 2016, the SDSL Project Authors.  All rights reserved.
// Please see the AUTHORS file for details.  Use of this source code is governed
// by a BSD license that can be found in the LICENSE file.
/*!\file lcp_byte.hpp
 * \brief lcp_byte.hpp contains a (compressed) lcp array.
 * \author Simon Gog
 */
#ifndef INCLUDED_SDSL_LCP_BYTE
#define INCLUDED_SDSL_LCP_BYTE

#include <algorithm> // for lower_bound
#include <cassert>
#include <iomanip>
#include <iostream>
#include <iterator>
#include <utility> // for pair
#include <vector>

#include <sdsl/int_vector.hpp>
#include <sdsl/iterators.hpp>
#include <sdsl/lcp.hpp>

namespace sdsl
{

//! A class for a simple compressed version of LCP information
/*! Each small LCP value x=LCP[i] (\f$\leq 254\f$) is represented in a byte.
 *  For x=LCP[i] \f$\geq 255\f$ a pair (i, x) is store an list of word  pairs.
 *  This list is binary search to access LCP[i].
 *  \par Time complexity
 *        - \f$\Order{1}\f$ if the value is less than 255 and
 *        - \f$\Order{\log n}\f$ (\f$n=size()\f$) otherwise.
 * \par Reference
 *   Mohamed Ibrahim Abouelhoda, Stefan Kurtz, Enno Ohlebusch:
 *   Replacing suffix trees with enhanced suffix arrays.
 *   J. Discrete Algorithms 2(1): 53-86 (2004)
 */
template <uint8_t t_width = 0>
class lcp_byte
{
  public:
    typedef typename int_vector<t_width>::value_type value_type;
    typedef random_access_const_iterator<lcp_byte> const_iterator;
    typedef const_iterator iterator;
    typedef const value_type const_reference;
    typedef const_reference reference;
    typedef const_reference * pointer;
    typedef const pointer const_pointer;
    typedef int_vector<>::size_type size_type;
    typedef ptrdiff_t difference_type;

    typedef lcp_plain_tag lcp_category;
    typedef lcp_tag index_tag;

    enum
    {
        fast_access = 0,
        text_order = 0,
        sa_order = 1
    }; // as the lcp_byte is not fast for texts with long repetition

    template <class Cst>
    using type = lcp_byte;

  private:
    int_vector<8> m_small_lcp;         // vector for LCP values < 255
    int_vector<t_width> m_big_lcp;     // vector for LCP values > 254
    int_vector<t_width> m_big_lcp_idx; // index of LCP entries in the LCP array

    typedef std::pair<size_type, size_type> tPII;
    typedef std::vector<tPII> tVPII;

  public:
    //! Default Constructor
    lcp_byte() = default;
    lcp_byte(const lcp_byte &) = default;
    lcp_byte(lcp_byte &&) = default;
    lcp_byte & operator=(const lcp_byte &) = default;
    lcp_byte & operator=(lcp_byte &&) = default;

    //! Constructor
    lcp_byte(cache_config & config)
    {
        std::string lcp_file = cache_file_name(conf::KEY_LCP, config);
        int_vector_buffer<> lcp_buf(lcp_file);
        m_small_lcp = int_vector<8>(lcp_buf.size());
        size_type l = 0, max_l = 0, max_big_idx = 0, big_sum = 0;

        for (size_type i = 0; i < m_small_lcp.size(); ++i)
        {
            if ((l = lcp_buf[i]) < 255) { m_small_lcp[i] = l; }
            else
            {
                m_small_lcp[i] = 255;
                if (l > max_l) max_l = l;
                max_big_idx = i;
                ++big_sum;
            }
        }
        m_big_lcp = int_vector<>(big_sum, 0, bits::hi(max_l) + 1);
        m_big_lcp_idx = int_vector<>(big_sum, 0, bits::hi(max_big_idx) + 1);

        for (size_type i = 0, ii = 0; i < m_small_lcp.size(); ++i)
        {
            if ((l = lcp_buf[i]) >= 255)
            {
                m_big_lcp[ii] = l;
                m_big_lcp_idx[ii] = i;
                ++ii;
            }
        }
    }

    //! Number of elements in the instance.
    size_type size() const { return m_small_lcp.size(); }

    //! Returns the largest size that lcp_byte can ever have.
    static size_type max_size() { return int_vector<8>::max_size(); }

    //! Returns if the data strucutre is empty.
    bool empty() const { return m_small_lcp.empty(); }

    //! Returns a const_iterator to the first element.
    const_iterator begin() const { return const_iterator(this, 0); }

    //! Returns a const_iterator to the element after the last element.
    const_iterator end() const { return const_iterator(this, size()); }

    //! []-operator
    /*!\param i Index of the value. \f$ i \in [0..size()-1]\f$.
     * Time complexity: O(1) for small and O(log n) for large values
     */
    inline value_type operator[](size_type i) const
    {
        if (m_small_lcp[i] != 255) { return m_small_lcp[i]; }
        else
        {
            size_type idx = lower_bound(m_big_lcp_idx.begin(), m_big_lcp_idx.end(), i) - m_big_lcp_idx.begin();
            return m_big_lcp[idx];
        }
    }

    //! Serialize to a stream.
    size_type serialize(std::ostream & out, structure_tree_node * v = nullptr, std::string name = "") const
    {
        structure_tree_node * child = structure_tree::add_child(v, name, util::class_name(*this));
        size_type written_bytes = 0;
        written_bytes += m_small_lcp.serialize(out, child, "small_lcp");
        written_bytes += m_big_lcp.serialize(out, child, "large_lcp");
        written_bytes += m_big_lcp_idx.serialize(out, child, "large_lcp_idx");
        structure_tree::add_size(child, written_bytes);
        return written_bytes;
    }

    //! Load from a stream.
    void load(std::istream & in)
    {
        m_small_lcp.load(in);
        m_big_lcp.load(in);
        m_big_lcp_idx.load(in);
    }

    template <typename archive_t>
    void CEREAL_SAVE_FUNCTION_NAME(archive_t & ar) const
    {
        ar(CEREAL_NVP(m_small_lcp));
        ar(CEREAL_NVP(m_big_lcp));
        ar(CEREAL_NVP(m_big_lcp_idx));
    }

    template <typename archive_t>
    void CEREAL_LOAD_FUNCTION_NAME(archive_t & ar)
    {
        ar(CEREAL_NVP(m_small_lcp));
        ar(CEREAL_NVP(m_big_lcp));
        ar(CEREAL_NVP(m_big_lcp_idx));
    }

    //! Equality operator.
    bool operator==(lcp_byte const & other) const noexcept
    {
        return (m_small_lcp == other.m_small_lcp) && (m_big_lcp == other.m_big_lcp) &&
               (m_big_lcp_idx == other.m_big_lcp_idx);
    }

    //! Inequality operator.
    bool operator!=(lcp_byte const & other) const noexcept { return !(*this == other); }
};

} // end namespace sdsl
#endif
