 During this time between 1999-2001 they were known as Club Deportivo Real Independiente.In 2006, the owners of Coca/Cola "later renamed Nacional 1906" approached Independiente FC, the board voted on merging the club forming Independiente Nacional 1906, this was the shot in the arm the club needed as they won promotion to Primera division, however the poor results led the team to the decline in the 2007 Clausura.After the relegation to Segunda Division they could not register in the new season in the 2007 Apertura for not fulfilling their financial obligations and the table went idle for several seasons, to the point of considering that the team had ceased to exist professionally, was until 2015 when they resume their activity when they register to compete in the Apertura Tournament of that year by purchasing a franchise in the Tercera Division, this because they lost the right to be in the Segunda Division after the long time elapsed after his descent from the Primera Division and his return to sports.