 CompuCell3D

CompuCell3D is a three-dimensional C++ software problem solving environment for simulations of biocomplexity problems, integrating multiple mathematical [morphogenesis] models.These include the cellular Potts model (CPM) which can model cell clustering, growth, division, death, adhesion, and volume and surface area constraints; as well as partial differential equation solvers for modeling reaction–diffusion of external chemical fields and cell type automata for differentiation.