Add

.gitattributes

@@ -33,3 +33,4 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
 *.zip filter=lfs diff=lfs merge=lfs -text
 *.zst filter=lfs diff=lfs merge=lfs -text
 *tfevents* filter=lfs diff=lfs merge=lfs -text
+pytorch_model.bin filter=lfs diff=lfs merge=lfs -text

added_tokens.json

@@ -0,0 +1,10 @@
+{
+  "<im_col>": 151649,
+  "<im_end>": 151647,
+  "<im_patch>": 151648,
+  "<im_start>": 151646,
+  "<|endoftext|>": 151643,
+  "<|im_end|>": 151645,
+  "<|im_start|>": 151644,
+  "<|image|>": 151650
+}

config.json

@@ -0,0 +1,29 @@
+{
+  "architectures": [
+    "MOLMoEForCausalLM"
+  ],
+  "auto_map": {
+    "AutoConfig": "config_molmoe.MolmoeConfig",
+    "AutoModelForCausalLM": "modeling_molmoe.MOLMoEForCausalLM"
+  },
+  "clip_qkv": null,
+  "embedding_size": 152064,
+  "hidden_size": 2048,
+  "initializer_range": 0.02,
+  "intermediate_size": 1024,
+  "layer_norm_eps": 1e-05,
+  "max_position_embeddings": 4096,
+  "model_type": "molmoe",
+  "num_attention_heads": 16,
+  "num_hidden_layers": 16,
+  "num_key_value_heads": 16,
+  "qkv_bias": false,
+  "rope_theta": 10000.0,
+  "tie_word_embeddings": false,
+  "torch_dtype": "float32",
+  "transformers_version": "4.43.3",
+  "use_cache": true,
+  "use_position_ids": true,
+  "vocab_size": 50304,
+  "weight_tying": false
+}

config_molmoe.py

@@ -0,0 +1,87 @@
+from typing import List
+
+from transformers import PretrainedConfig, AutoTokenizer
+
+
+def config_to_moe_args(config):
+    from megablocks.layers.arguments import Arguments as MoEArgs
+
+    kwargs = {
+        "activation_fn": F.silu,
+        "mlp_type": "glu" if "glu" in config.activation_type.lower() else "mlp",
+        "mlp_impl": "sparse",
+        "hidden_size": config.hidden_size,
+        "ffn_hidden_size": config.intermediate_size,
+        "moe_num_experts": config.moe_num_experts,
+        "num_layers": config.num_hidden_layers,
+        # Handled by FSDP (https://github.com/databricks/megablocks/issues/57#issuecomment-1854594483)
+        "moe_weight_parallelism": False,
+        "moe_expert_model_parallelism": False,
+        "moe_top_k": config.moe_top_k,
+        # "moe_loss_weight": config.moe_loss_weight,
+        # "device": config.init_device,
+        # Handled by FSDP
+        "bf16": False,
+        "fp16": False,
+        "bias": False,
+        "return_bias": False,
+    }
+
+    return MoEArgs(**kwargs)
+
+class MolmoeConfig(PretrainedConfig):
+    model_type = "molmoe"
+    keys_to_ignore_at_inference = ["past_key_values"]
+
+    def __init__(
+        self,
+        vocab_size=50304,
+        embedding_size=50304,
+        hidden_size=4096,
+        intermediate_size=11008,
+        num_hidden_layers=32,
+        num_attention_heads=32,
+        num_key_value_heads=None,
+        max_position_embeddings=2048,
+        initializer_range=0.02,
+        use_cache=True,
+        layer_norm_eps: float = 1e-5,
+        rope_theta=10000.0,
+        clip_qkv=None,
+        qkv_bias: bool = False,
+        weight_tying: bool = False,
+        use_position_ids: bool=True,
+        tie_word_embeddings: bool=True,
+        moe_num_experts: int = 64,
+        moe_top_k: int = 8,
+        **kwargs,
+    ):
+        self.vocab_size = vocab_size
+        self.embedding_size = embedding_size
+        self.max_position_embeddings = max_position_embeddings
+        self.hidden_size = hidden_size
+        self.intermediate_size = intermediate_size
+        self.num_hidden_layers = num_hidden_layers
+        self.num_attention_heads = num_attention_heads
+        self.layer_norm_eps = layer_norm_eps
+        self.weight_tying = weight_tying
+        self.use_position_ids = use_position_ids
+
+        # for backward compatibility
+        if num_key_value_heads is None:
+            num_key_value_heads = num_attention_heads
+
+        self.num_key_value_heads = num_key_value_heads
+        self.initializer_range = initializer_range
+        self.use_cache = use_cache
+        self.rope_theta = rope_theta
+        self.clip_qkv = clip_qkv
+        self.qkv_bias = qkv_bias
+        self.tie_word_embeddings = tie_word_embeddings
+
+        super().__init__(
+            tie_word_embeddings=tie_word_embeddings,
+            **kwargs,
+        )
+
+MolmoeConfig.register_for_auto_class()

convert_to_hf.py

@@ -0,0 +1,89 @@
+import argparse
+import logging
+import os
+
+import torch
+
+from hf_molmo.config_molmo import MolmoConfig
+from hf_molmo.image_preprocessing_molmo import MolmoImageProcessor
+from hf_molmo.modelling_molmo import MOLMoForCausalLM
+from hf_molmo.preprocessing_molmo import MolmoProcessor
+from olmo import ModelConfig
+from olmo.mm_data.data_utils import build_tokenizer
+
+logger = logging.getLogger(__name__)
+
+
+def write_config(checkpoint_dir: str, output_dir: str):
+    # save config as HF config
+
+    logger.info(f"Loading checkpoint from {checkpoint_dir}")
+
+    config_path = os.path.join(checkpoint_dir, "config.yaml")
+    model_config = ModelConfig.load(config_path, key="model")
+    config_kwargs = model_config.asdict()
+    config_kwargs["use_cache"] = True
+    config_kwargs["vit_load_path"] = None
+    config_kwargs["llm_load_path"] = None
+    config = MolmoConfig(
+        vocab_size=model_config.vocab_size,
+        embedding_size=model_config.embedding_size,
+        hidden_size=model_config.d_model,
+        intermediate_size=model_config.mlp_hidden_size,
+        num_hidden_layers=model_config.n_layers,
+        num_attention_heads=model_config.n_heads,
+        num_key_value_heads=model_config.n_kv_heads,
+        max_position_embeddings=model_config.max_position_embeddings or model_config.max_sequence_length,
+        initializer_range=model_config.initializer_range,
+        use_cache=True,
+        layer_norm_eps=model_config.layer_norm_eps,
+        rope_theta=model_config.rope_theta,
+        clip_qkv=model_config.clip_qkv,
+        qkv_bias=model_config.qkv_bias,
+        weight_tying=model_config.weight_tying,
+        use_position_ids=True,
+        tie_word_embeddings=False
+    )
+
+    logger.info(f"Saving HF-compatible config to {os.path.join(checkpoint_dir, 'config.json')}")
+    config.save_pretrained(output_dir)
+
+    preprocessor = MolmoProcessor(
+        MolmoImageProcessor(
+            max_crops=model_config.max_crops
+        ),  # FIXME now just assumes everything if fixed
+        build_tokenizer(model_config.tokenizer.identifier.split("m:")[1]).tokenizer
+    )
+    preprocessor.save_pretrained(output_dir)
+
+
+def write_model(checkpoint_dir: str, output_dir: str, ignore_olmo_compatibility: bool = False):
+    # For device_map = "auto", etc. the models are loaded in a way that start_prefix is not computed correctly.
+    # So, we explicitly store the model with the expected prefix.
+    old_model_path = os.path.join(checkpoint_dir, "model.pt")
+    new_model_path = os.path.join(output_dir, "pytorch_model.bin")
+
+    state_dict = torch.load(old_model_path)
+    new_state_dict = {f"{MOLMoForCausalLM.base_model_prefix}.{key}": val for key, val in state_dict.items()}
+    torch.save(new_state_dict, new_model_path)
+
+
+def convert_checkpoint(checkpoint_dir: str, output_dir: str):
+    os.makedirs(output_dir, exist_ok=True)
+    write_config(checkpoint_dir, output_dir)
+    write_model(checkpoint_dir, output_dir)
+
+
+def main():
+    parser = argparse.ArgumentParser(
+        description="Adds a config.json to the checkpoint directory, and creates pytorch_model.bin, "
+                    "making it easier to load weights as HF models."
+    )
+    parser.add_argument("checkpoint_dir")
+    parser.add_argument("output_dir")
+    args = parser.parse_args()
+    convert_checkpoint(args.checkpoint_dir, args.output_dir)
+
+
+if __name__ == "__main__":
+    main()

generation_config.json

@@ -0,0 +1,6 @@
+{
+  "_from_model_config": true,
+  "eos_token_id": 50279,
+  "pad_token_id": 1,
+  "transformers_version": "4.43.0.dev0"
+}

image_preprocessing_molmo.py

@@ -0,0 +1,569 @@
+"""Image processor class for Molmo"""
+from typing import List, Optional, Union, Mapping
+
+import numpy as np
+import einops
+import torch
+import torchvision.transforms
+from torchvision.transforms import InterpolationMode
+from torchvision.transforms.functional import convert_image_dtype
+
+from transformers.image_utils import (
+    OPENAI_CLIP_MEAN,
+    OPENAI_CLIP_STD,
+    ImageInput,
+    is_valid_image,
+)
+from transformers.processing_utils import ImagesKwargs
+from transformers.image_processing_utils import BaseImageProcessor, BatchFeature
+from transformers.utils import TensorType, is_vision_available, logging
+
+
+logger = logging.get_logger(__name__)
+
+
+def make_batched_images(images) -> List[List[ImageInput]]:
+    """
+    Accepts images in list or nested list format, and makes a list of images for preprocessing.
+
+    Args:
+        images (`Union[List[List[ImageInput]], List[ImageInput], ImageInput]`):
+            The input image.
+
+    Returns:
+        list: A list of images.
+    """
+    if isinstance(images, (list, tuple)) and isinstance(images[0], (list, tuple)) and is_valid_image(images[0][0]):
+        return [img for img_list in images for img in img_list]
+
+    elif isinstance(images, (list, tuple)) and is_valid_image(images[0]):
+        return images
+
+    elif is_valid_image(images):
+        return [images]
+
+    raise ValueError(f"Could not make batched images from {images}")
+
+
+def pad_to_bounding_box(
+    image, offset_height, offset_width, target_height,
+    target_width, value=0
+):
+    height, width = image.shape[:2]
+    after_padding_width = target_width - offset_width - width
+    after_padding_height = target_height - offset_height - height
+    return np.pad(image, [
+        [offset_height, after_padding_height],
+        [offset_width, after_padding_width],
+        [0, 0]
+    ], constant_values=value)
+
+
+def normalize_image(image, offset, scale):
+    image -= np.array(offset, dtype=np.float32)[None, None, :]
+    image /= np.array(scale, dtype=np.float32)[None, None, :]
+    return image
+
+
+def resize_and_pad(
+    image,
+    desired_output_size,
+    resize_method=InterpolationMode.BILINEAR,
+    pad_value=0,
+    normalize=True,
+    image_mean=OPENAI_CLIP_MEAN,
+    image_std=OPENAI_CLIP_STD,
+):
+    desired_height, desired_width = desired_output_size
+    height, width = image.shape[:2]
+
+    # Cast into float32 since the training code did this in float32 and it (very rarely) effects
+    # the results after rounding.
+    image_scale_y = np.array(desired_height, np.float32) / np.array(height, np.float32)
+    image_scale_x = np.array(desired_width, np.float32) / np.array(width, np.float32)
+    image_scale = min(image_scale_x, image_scale_y)
+    scaled_height = int(np.array(height, np.float32) * image_scale)
+    scaled_width = int(np.array(width, np.float32) * image_scale)
+
+    # if resize_method == "tensorflow":
+    #     FIXME remove
+    import tensorflow as tf
+    image = tf.image.convert_image_dtype(tf.constant(image), dtype=tf.float32)
+    image = tf.image.resize(
+        image,
+        [scaled_height, scaled_width],
+        method=tf.image.ResizeMethod.BILINEAR,
+        antialias=True,
+    )
+    image = tf.clip_by_value(image, 0.0, 1.0)
+    image = image.numpy()
+    # else:
+    #     image = torch.permute(torch.from_numpy(image), [2, 0, 1])
+    #     image = convert_image_dtype(image)  # resize in flaot32
+    #     image = torchvision.transforms.Resize(
+    #         [scaled_height, scaled_width], InterpolationMode.BILINEAR, antialias=True
+    #     )(image)
+    #     image = torch.clip(image, 0.0, 1.0)
+    #     image = torch.permute(image, [1, 2, 0]).numpy()
+
+    top_pad = (desired_height - scaled_height) // 2
+    left_pad = (desired_width - scaled_width) // 2
+    padding = [
+        [top_pad, desired_height - scaled_height - top_pad],
+        [left_pad, desired_width - scaled_width - left_pad],
+        [0, 0]
+    ]
+    image_mask = np.pad(np.ones_like(image[:, :, 0], dtype=bool), padding[:2])
+    image = np.pad(image, padding, constant_values=pad_value)
+    if normalize:
+        image = normalize_image(image, offset=image_mean, scale=image_std)
+    return image, image_mask
+
+
+def select_tiling(h, w, patch_size, max_num_patches):
+    """Decide how best to divide in image of size [w, h] in up to max_num_patches of size patch_size"""
+    original_size = np.stack([h, w])  # [1, 2]
+    original_res = h * w
+    tilings = []
+    for i in range(1, max_num_patches+1):
+        for j in range(1, max_num_patches+1):
+            if i*j <= max_num_patches:
+                tilings.append((i, j))
+    # sort so argmin and argmax favour smaller tilings in the event of a tie
+    tilings.sort(key=lambda x: (x[0]*x[1], x[0]))
+    candidate_tilings = np.array(tilings, dtype=np.int32)  # [n_resolutions, 2]
+    candidate_resolutions = candidate_tilings * patch_size  # [n_resolutions, 2]
+
+    # How much we would need to scale the image to fit exactly in each tiling
+    original_size = np.stack([h, w], dtype=np.float32)  # [1, 2]
+    required_scale_d = candidate_resolutions.astype(np.float32) / original_size
+    required_scale = np.min(required_scale_d, axis=-1, keepdims=True)  # [n_resolutions, 1]
+    if np.all(required_scale < 1):
+        # We are forced to downscale, so try to minimize the amount of downscaling
+        ix = np.argmax(required_scale)
+    else:
+        # Pick the resolution that required the least upscaling so that it most closely fits the image
+        required_scale = np.where(required_scale < 1.0, 10e9, required_scale)
+        ix = np.argmin(required_scale)
+    return candidate_tilings[ix]
+
+
+class MolmoImagesKwargs(ImagesKwargs, total=False):
+    max_crops: Optional[int]
+    overlap_margins: Optional[List[int]]
+    base_image_input_size: Optional[List[int]]
+    image_token_length_w: Optional[int]
+    image_token_length_h: Optional[int]
+    image_patch_size: Optional[int]
+    image_padding_mask: Optional[bool]
+
+
+class MolmoImageProcessor(BaseImageProcessor):
+    """Preprocess images and multi-model inputs"""
+
+    def __init__(
+        self,
+        max_crops: int = 12,
+        overlap_margins: List[int] = (4, 4),
+        base_image_input_size: List[int] = (336, 336),
+        image_token_length_w: int = 12,
+        image_token_length_h: int = 12,
+        image_patch_size: int = 14,
+        image_padding_mask: bool = True,
+        do_normalize: bool = True,
+        image_mean: Optional[Union[float, List[float]]] = None,
+        image_std: Optional[Union[float, List[float]]] = None,
+        **kwargs,
+    ):
+        super().__init__(**kwargs)
+        self.max_crops = max_crops
+        self.overlap_margins = overlap_margins
+        self.base_image_input_size = base_image_input_size
+        self.image_token_length_w = image_token_length_w
+        self.image_token_length_h = image_token_length_h
+        self.image_patch_size = image_patch_size
+        self.image_padding_mask = image_padding_mask
+        self.do_normalize = do_normalize
+        self.image_mean = image_mean if image_mean is not None else OPENAI_CLIP_MEAN
+        self.image_std = image_std if image_std is not None else OPENAI_CLIP_STD
+
+    def image_to_patches_and_tokens(
+        self,
+        image: ImageInput,
+        image_patch_token_id: int,
+        image_col_token_id: int,
+        image_start_token_id: int,
+        image_end_token_id: int,
+        max_crops: Optional[int] = None,
+        overlap_margins: Optional[List[int]] = None,
+        base_image_input_size: Optional[Union[int, List[int]]] = None,
+        image_token_length_w: Optional[int] = None,
+        image_token_length_h: Optional[int] = None,
+        image_patch_size: Optional[int] = None,
+    ):
+        """Preprocesses an image
+
+        Returns:
+            crops: (n_crops, n_patches, patch_dim) individual crops, `n_crops` might
+                   change between images but the other dimension are fixed
+            tokens: (n_tokens,) int32 tokens, pad tokens indicating where to insert the
+                                patch features, might include other special tokens as well
+            patch_ordering: (n_crops, n_tokens_per_crop) order image features should be inserted
+                            into the `tokens`, negative values indicates patches features to exclude
+            padding_mask: (n_crops, n_patches) what percent of each crop is padding, be None
+                          if the image mask is not being used.
+        """
+        if isinstance(base_image_input_size, int):
+            base_image_input_size = (base_image_input_size, base_image_input_size)
+
+        base_image_input_d = image_patch_size
+        tokens_per_image = image_token_length_w * image_token_length_h
+        image_base_patch_w = base_image_input_size[1] // base_image_input_d
+        image_base_patch_h = base_image_input_size[0] // base_image_input_d
+
+        original_image_h, original_image_w = image.shape[:2]
+        crop_size = base_image_input_size[0]
+
+        # Discard this many patches from the (left/top, right/bottom) of crops
+        left_margin, right_margin = overlap_margins
+        # left_margin, right_margin = 2, 2
+        assert left_margin % 2 == 0  # Required for compatibility with 2x2 pooling
+        total_margin_pixels = base_image_input_d*(right_margin + left_margin)  # pixels removed per dim
+        crop_patches = base_image_input_size[0] // base_image_input_d  # patches per crop dim
+        crop_window_patches = crop_patches - (right_margin + left_margin)  # usable patches
+        crop_window_size = crop_window_patches * base_image_input_d
+        tiling = select_tiling(
+            original_image_h - total_margin_pixels,
+            original_image_w - total_margin_pixels,
+            crop_window_size,
+            max_crops
+        )
+        src, img_mask = resize_and_pad(
+            image,
+            [tiling[0]*crop_window_size+total_margin_pixels, tiling[1]*crop_window_size+total_margin_pixels]
+        )
+
+        # Now we have to split the image into crops, while keeping track of how each patch in the
+        # each crop should be ordered in the global image, this require a lot of tricky booking
+        n_crops = tiling[0] * tiling[1]
+        patches_arr = []
+        mask_arr = []
+        patch_ordering_arr = []
+
+        # We assume 2x2 pooling, but can allow padding the right/bottom with extra
+        # patches if the number of patches per side is not even
+        assert (crop_patches+1)//2 == image_token_length_h
+        assert (crop_patches+1)//2 == image_token_length_w
+        on = 0
+        on_patch = 0
+        for i in range(tiling[0]):
+            y0 = i*crop_window_size
+            if i == 0:
+                crop_y0 = 0
+            else:
+                crop_y0 = left_margin // 2
+
+            crop_h = image_base_patch_h - (right_margin + left_margin)
+            if i == 0:
+                crop_h += left_margin
+            if i == (tiling[0]-1):
+                crop_h += right_margin
+            for j in range(tiling[1]):
+                x0 = j*crop_window_size
+                if j == 0:
+                    crop_x0 = 0
+                else:
+                    crop_x0 = left_margin // 2
+
+                crop_w = image_base_patch_w - (right_margin + left_margin)
+                if j == 0:
+                    crop_w += left_margin
+                if j == (tiling[1]-1):
+                    crop_w += right_margin
+
+                pooled_w = (crop_w + 1) // 2
+                pooled_h = (crop_h + 1) // 2
+                patch_ordering_arr.append(
+                    pad_to_bounding_box(
+                        np.reshape(np.arange(on, on+pooled_h*pooled_w, dtype=np.int32), (pooled_h, pooled_w, 1)),
+                        crop_y0, crop_x0, image_token_length_h, image_token_length_w, value=-1
+                    )[:, :, 0]
+                )
+                patches_arr.append(src[y0:y0+crop_size, x0:x0+crop_size])
+                mask_arr.append(img_mask[y0:y0+crop_size, x0:x0+crop_size])
+
+                on += pooled_h*pooled_w
+                on_patch += 1
+        patches = np.stack(patches_arr)
+        patch_ordering = np.stack(patch_ordering_arr)
+        img_mask = np.stack(mask_arr)
+
+        # Switch to [n_crops, n_patches, pixels_per_patch] format
+        image_layout_impatch_w, image_layout_impatch_h = tiling[0], tiling[1]
+        patches = einops.rearrange(
+            patches, 'p (h dh) (w dw) c -> p (h w) (dh dw c)',
+            dh=base_image_input_d,
+            dw=base_image_input_d,
+            h=image_base_patch_h,
+            w=image_base_patch_w
+        )
+        img_mask = einops.rearrange(
+            img_mask, 'p (h dh) (w dw) -> p (h w) (dh dw)',
+            dh=base_image_input_d,
+            dw=base_image_input_d,
+            h=image_base_patch_h,
+            w=image_base_patch_w
+        )
+
+        img_mask = img_mask.astype(np.float32).mean(axis=-1)
+        patch_ordering = np.reshape(patch_ordering, [-1])
+        valid = patch_ordering >= 0
+
+        # Transpose order, to get left-to-right order instead of crop-by-crop order
+        patch_ordering_rh = np.reshape(
+            patch_ordering,
+            [tiling[0], tiling[1], image_token_length_h, image_token_length_w]
+        )
+        patch_ordering_rh = np.transpose(patch_ordering_rh, [0, 2, 1, 3])
+        patch_ordering_rh = np.reshape(patch_ordering_rh, [-1])
+
+        # The transpose will screw up which patches are masked, project the
+        # new order into sparse structure of `patch_ordering` to fix this
+        patch_ordering[valid] = patch_ordering_rh[patch_ordering_rh >= 0]
+
+        # Now build the output tokens
+        h = tiling[0] * crop_window_patches + (right_margin+left_margin)
+        w = tiling[1] * crop_window_patches + (right_margin+left_margin)
+        per_row = np.full(
+            ((w+1)//2,),
+            image_patch_token_id,
+        )
+        per_row = np.concatenate([per_row, [image_col_token_id]], 0)
+
+        joint = np.tile(per_row, [(h+1)//2])
+        joint = [
+            [image_start_token_id],
+            joint,
+            [image_end_token_id]
+        ]
+
+        # Finally do the same for the global image
+        resized, _ = resize_and_pad(image, base_image_input_size)
+        resized = einops.rearrange(
+            resized, '(h dh) (w dw) c -> (h w) (dh dw c)',
+            dh=base_image_input_d,
+            dw=base_image_input_d,
+            h=image_base_patch_h,
+            w=image_base_patch_w
+        )
+        patches = np.concatenate([np.expand_dims(resized, 0), patches], 0)
+
+        # Global image goes first, so the order of patches in previous crops gets increased
+        patch_ordering = np.where(
+            patch_ordering >= 0,
+            patch_ordering + tokens_per_image,
+            -1
+        )
+        patch_ordering = np.concatenate([np.arange(0, tokens_per_image), patch_ordering], 0)
+        per_row = np.full(
+            (image_token_length_w,),
+            image_patch_token_id,
+        )
+        per_row = np.concatenate([per_row, [image_col_token_id]], 0)
+        extra_tokens = np.tile(per_row, [image_token_length_h])
+        joint = [
+                    [image_start_token_id],
+                    extra_tokens,
+                    [image_end_token_id],
+                ] + joint
+
+        joint = np.concatenate(joint, 0)
+        img_mask = np.pad(img_mask, [[0, 1], [0, 0]], constant_values=-1)
+        return patches, joint, patch_ordering, img_mask
+
+    def build_image_input_idx(
+        self,
+        image_tokens: np.ndarray,
+        patch_order: np.ndarray,
+        image_patch_token_id: int,
+        no_image: Optional[bool] = None,
+        image_token_length_w: Optional[int] = None,
+        image_token_length_h: Optional[int] = None,
+    ):
+        """Converts `patch_order` into a mapping of token_id -> patch_id"""
+
+        tokens_per_image = image_token_length_w * image_token_length_h
+        if no_image is not None and no_image:
+            return np.zeros((0, tokens_per_image), np.int32)
+
+        # Indices to insert the patches
+        image_input_idx = image_tokens == image_patch_token_id
+        image_input_idx = np.nonzero(image_input_idx)[0].astype(np.int32)
+
+        if patch_order is not None:
+            n_tokens = image_input_idx.shape[0]
+            patch_order = np.reshape(patch_order, [-1])
+            n_patches = patch_order.shape[0]
+
+            valid = patch_order >= 0
+            n_valid_patches = valid.sum()
+            assert len(image_input_idx) == n_valid_patches
+
+            sorted_patch_ixs = np.zeros([n_tokens], np.int32)
+            sorted_patch_ixs[patch_order[valid]] = np.arange(n_valid_patches, dtype=np.int32)
+
+            # Project the inverted mapping into same sparse structure
+            sorted_patch_ixs_ex = np.full(np.shape(patch_order), -1)
+            sorted_patch_ixs_ex[valid] = sorted_patch_ixs
+
+            # Do the gather and then re-masked outputs that were masked in `sorted_patch_ixs`
+            valid = (sorted_patch_ixs_ex >= 0).astype(np.int32)
+            image_input_idx = image_input_idx[sorted_patch_ixs_ex*valid]
+            image_input_idx = image_input_idx*valid - 100*(1 - valid)
+            image_input_idx = np.reshape(image_input_idx, [-1, tokens_per_image])
+        return image_input_idx
+
+    def preprocess(
+        self,
+        image: np.ndarray,
+        image_patch_token_id: int,
+        image_col_token_id: int,
+        image_start_token_id: int,
+        image_end_token_id: int,
+        max_crops: Optional[int] = None,
+        overlap_margins: Optional[List[int]] = None,
+        base_image_input_size: Optional[Union[int, List[int]]] = None,
+        image_token_length_w: Optional[int] = None,
+        image_token_length_h: Optional[int] = None,
+        image_patch_size: Optional[int] = None,
+        **kwargs,
+    ):
+        """Preprocesses a single image"""
+
+        max_crops = max_crops or self.max_crops
+        overlap_margins = overlap_margins or self.overlap_margins
+        base_image_input_size = base_image_input_size or self.base_image_input_size
+        image_token_length_w = image_token_length_w or self.image_token_length_w
+        image_token_length_h = image_token_length_h or self.image_token_length_h
+        image_patch_size = image_patch_size or self.image_patch_size
+
+        crops, image_tokens, patch_ordering, img_mask = self.image_to_patches_and_tokens(
+            image,
+            image_patch_token_id,
+            image_col_token_id,
+            image_start_token_id,
+            image_end_token_id,
+            max_crops,
+            overlap_margins,
+            base_image_input_size,
+            image_token_length_w,
+            image_token_length_h,
+            image_patch_size,
+        )
+        patch_idx = self.build_image_input_idx(
+            image_tokens,
+            patch_ordering,
+            image_patch_token_id,
+            image_token_length_w=image_token_length_w,
+            image_token_length_h=image_token_length_h,
+        )
+        return crops, image_tokens, patch_idx, img_mask
+
+    def multimodal_preprocess(
+        self,
+        images: np.ndarray,
+        tokens: List[int],
+        image_idx: np.ndarray,
+        sequence_length: int,
+        image_patch_token_id: int,
+        image_col_token_id: int,
+        image_start_token_id: int,
+        image_end_token_id: int,
+        **kwargs,
+    ):
+        """Merge images and text tokens into multi-modal features for the model
+
+        :param images: images to use as input
+        :param tokens: input text tokens
+        :param image_idx: where to insert the images into `tokens`
+        :params image_patch_token_id: id to use of tokens that will contain image features
+        :params image_col_token_id: token id for image column special tokens
+        :params image_start_token_id: token id for image start special tokens
+        :params image_end_token_id: token id for image end special tokens
+        :params kwargs: override preprocessor default args
+        """
+        max_total_crops = kwargs.get("max_crops") or self.max_crops
+        image_token_length_w = kwargs.get("image_token_length_w") or self.image_token_length_w
+        image_token_length_h = kwargs.get("image_token_length_h") or self.image_token_length_h
+        image_patch_size = kwargs.get("image_patch_size") or self.image_patch_size
+        base_image_input_size = kwargs.get("base_image_input_size") or self.base_image_input_size
+        image_num_patch = (
+            base_image_input_size[0] // image_patch_size,
+            base_image_input_size[1] // image_patch_size,
+        )
+        image_padding_mask = kwargs.get("image_padding_mask") or self.image_padding_mask
+
+        tokens_per_image = image_token_length_w * image_token_length_h
+        n_pixels = image_patch_size * image_patch_size * 3
+        n_patches = image_num_patch[0] * image_num_patch[1]
+
+        if images is None:
+            return {
+                "input_ids": tokens,
+                "images": None,
+                "image_input_idx": None
+            }
+        else:
+            n = len(images)
+            all_crops = []
+            all_image_idx = []
+            out_tokens = []
+            all_crop_masks = []
+
+            for ix in range(n):
+                token_ix = image_idx[ix]
+                crops, image_tokens, patch_idx, img_mask = self.preprocess(
+                    images[ix],
+                    image_patch_token_id,
+                    image_col_token_id,
+                    image_start_token_id,
+                    image_end_token_id,
+                    **kwargs,
+                )
+
+                if token_ix == -1:  # -1 is an image inserted at the very start
+                    start = 0
+                    token_ix = 0
+                    end = 0
+                else:
+                    start = 0 if ix == 0 else image_idx[ix-1] + 1
+                    end = token_ix + 1
+
+                all_image_idx.append(patch_idx + token_ix)
+                all_crops.append(crops)
+                out_tokens.append(tokens[start:token_ix])
+                out_tokens.append(image_tokens)
+                if ix == (n - 1):
+                    out_tokens.append(tokens[end:])
+                if image_padding_mask:
+                    all_crop_masks.append(img_mask)
+
+            input_ids = np.concatenate(out_tokens, 0)
+            images = np.concatenate(all_crops, 0)
+            image_input_idx = np.concatenate(all_image_idx, 0)
+            if image_padding_mask:
+                image_masks = np.concatenate(all_crop_masks, 0)
+            else:
+                image_masks = None
+
+        out = {
+            "input_ids": input_ids,
+            "images": images,
+            "image_input_idx": image_input_idx
+        }
+        if image_masks is not None:
+            out["image_masks"] = image_masks
+        return out
+
+
+MolmoImageProcessor.register_for_auto_class()

preprocessing_molmo.py

@@ -0,0 +1,175 @@
+"""
+Processor class for Molmo.
+"""
+
+from typing import List, Union, Optional
+
+from transformers.utils.constants import OPENAI_CLIP_STD, OPENAI_CLIP_MEAN
+
+try:
+    from typing import Unpack
+except ImportError:
+    from typing_extensions import Unpack
+
+import numpy as np
+import torch
+
+from transformers.image_utils import ImageInput
+from transformers.processing_utils import (
+    TextKwargs,
+    ProcessingKwargs,
+    ProcessorMixin,
+)
+
+from transformers.tokenization_utils_base import TextInput
+from transformers.utils import logging
+
+from transformers import AutoTokenizer
+from .image_preprocessing_molmo import MolmoImagesKwargs, make_batched_images, MolmoImageProcessor
+
+
+logger = logging.get_logger(__name__)
+
+
+DEFAULT_IMAGE_PATCH_TOKEN = f"<im_patch>"
+DEFAULT_IM_START_TOKEN = f"<im_start>"
+DEFAULT_IM_END_TOKEN = f"<im_end>"
+DEFAULT_IM_COL_TOKEN = f"<im_col>"
+IMAGE_PROMPT = "<|image|>"
+
+EXTRA_TOKENS = (DEFAULT_IM_START_TOKEN, DEFAULT_IM_END_TOKEN, DEFAULT_IMAGE_PATCH_TOKEN, DEFAULT_IM_COL_TOKEN, IMAGE_PROMPT)
+
+
+def get_special_token_ids(tokenizer):
+    ids = tokenizer.encode("".join(EXTRA_TOKENS), add_special_tokens=False)
+    assert len(ids) == len(EXTRA_TOKENS)
+    return {k: i for k, i in zip(EXTRA_TOKENS, ids)}
+
+
+class MolmoTextKwargs(TextKwargs, total=False):
+    style: Optional[str]
+    system_prompt: Optional[str]
+    message_format: Optional[str]
+    always_start_with_space: Optional[bool]
+    sequence_length: Optional[int]
+
+
+class MolmoProcessorKwargs(ProcessingKwargs, total=False):
+    text_kwargs: MolmoTextKwargs
+    images_kwargs: MolmoImagesKwargs
+    _defaults = {
+        "images_kwargs": {
+            "max_crops": 12,
+            "overlap_margins": [4, 4],
+            "base_image_input_size": [336, 336],
+            "image_token_length_w": 12,
+            "image_token_length_h": 12,
+            "image_patch_size": 14,
+            "image_padding_mask": True,
+        },
+        "text_kwargs": {
+            "style": "long_caption",
+            "system_prompt": "none",
+            "message_format": "role",
+            "always_start_with_space": True,
+            "sequence_length": 1536,
+            "padding": False,
+        },
+    }
+
+
+class MolmoProcessor(ProcessorMixin):
+    attributes = ["image_processor", "tokenizer"]
+    image_processor_class = "AutoImageProcessor"
+    tokenizer_class = ("Qwen2Tokenizer", "Qwen2TokenizerFast")
+
+    def __init__(self, image_processor: MolmoImageProcessor = None, tokenizer : AutoTokenizer = None, **kwargs):
+        # self.image_processor = image_processor
+        # self.tokenizer = tokenizer
+        super().__init__(image_processor, tokenizer)
+        self._special_tokens = None
+
+    @property
+    def special_token_ids(self):
+        if self._special_tokens is None:
+            self._special_tokens = get_special_token_ids(self.tokenizer)
+        return self._special_tokens
+
+    def get_tokens_input(self, prompt, message_format, always_start_with_space):
+        if message_format == "none" or message_format is None:
+            pass
+        elif message_format == "role":
+            prompt = "User: " + prompt + " Assistant:"
+        else:
+            raise NotImplementedError(f"Message format {message_format} not implemented")
+
+        if always_start_with_space:
+            prompt = " " + prompt
+
+        tokens = self.tokenizer.encode(prompt, add_special_tokens=False)
+
+        return tokens
+
+    def process(
+        self,
+        text: TextInput = None,
+        images: ImageInput = None,
+        **kwargs: Unpack[MolmoProcessorKwargs],
+    ):
+        output_kwargs = self._merge_kwargs(
+            MolmoProcessorKwargs,
+            tokenizer_init_kwargs=self.tokenizer.init_kwargs,
+            **kwargs,
+        )
+
+        tokens = self.get_tokens_input(
+            text,
+            output_kwargs["text_kwargs"]["message_format"],
+            output_kwargs["text_kwargs"]["always_start_with_space"],
+        )
+
+        image_token_id = self.special_token_ids[IMAGE_PROMPT]
+
+        if images is not None:
+            images = make_batched_images(images)
+            images = [np.array(image).astype(np.uint8) for image in images]
+            # For now only support inserting images at the start
+            image_idx = [-1]*len(images)
+        else:
+            image_idx = None
+
+        sequence_length = output_kwargs["text_kwargs"]["sequence_length"]
+
+        image_patch_token_id = self.special_token_ids[DEFAULT_IMAGE_PATCH_TOKEN]
+        image_col_token_id = self.special_token_ids[DEFAULT_IM_COL_TOKEN]
+        image_start_token_id = self.special_token_ids[DEFAULT_IM_START_TOKEN]
+        image_end_token_id = self.special_token_ids[DEFAULT_IM_END_TOKEN]
+        out = self.image_processor.multimodal_preprocess(
+            images=images,
+            image_idx=image_idx,
+            tokens=np.asarray(tokens).astype(np.int32),
+            sequence_length=sequence_length,
+            image_patch_token_id=image_patch_token_id,
+            image_col_token_id=image_col_token_id,
+            image_start_token_id=image_start_token_id,
+            image_end_token_id=image_end_token_id,
+            **output_kwargs["images_kwargs"]
+        )
+
+        # Prepend BOS
+        # qwen2 and olmo do not have a BOS, and instead use EOS as a generic seperator token.
+        bos = self.tokenizer.bos_token_id or self.tokenizer.eos_token_id
+        decoder_input_tokens = np.pad(out["input_ids"], [[1, 0]], constant_values=bos)
+        out["input_ids"] = decoder_input_tokens
+        if "image_input_idx" in out:
+            # Shift patch mapping up by one since we added BOS
+            image_input_idx = out["image_input_idx"]
+            out["image_input_idx"] = np.where(image_input_idx < 0, image_input_idx, image_input_idx + 1)
+
+        for k, v in out.items():
+            out[k] = torch.from_numpy(v)
+
+        return out
+
+
+MolmoProcessor.register_for_auto_class()

preprocessor_config.json

@@ -0,0 +1,32 @@
+{
+  "auto_map": {
+    "AutoImageProcessor": "image_preprocessing_molmo.MolmoImageProcessor",
+    "AutoProcessor": "preprocessing_molmo.MolmoProcessor"
+  },
+  "base_image_input_size": [
+    336,
+    336
+  ],
+  "do_normalize": true,
+  "image_mean": [
+    0.48145466,
+    0.4578275,
+    0.40821073
+  ],
+  "image_padding_mask": true,
+  "image_patch_size": 14,
+  "image_processor_type": "MolmoImageProcessor",
+  "image_std": [
+    0.26862954,
+    0.26130258,
+    0.27577711
+  ],
+  "image_token_length_h": 12,
+  "image_token_length_w": 12,
+  "max_crops": 12,
+  "overlap_margins": [
+    4,
+    4
+  ],
+  "processor_class": "MolmoProcessor"
+}

processor_config.json

@@ -0,0 +1,6 @@
+{
+  "auto_map": {
+    "AutoProcessor": "preprocessing_molmo.MolmoProcessor"
+  },
+  "processor_class": "MolmoProcessor"
+}

pytorch_model.bin

@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:7396521f044a7f809d12dd12b4a391a7184268ae3b4e2445963ca42be7dd6211
+size 28887711982

special_tokens_map.json

@@ -0,0 +1,4 @@
+{
+  "eos_token": "<|endoftext|>",
+  "pad_token": "<|padding|>"
+}

tokenizer_config.json

@@ -0,0 +1,238 @@
+{
+  "add_bos_token": false,
+  "add_eos_token": false,
+  "add_prefix_space": false,
+  "added_tokens_decoder": {
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+      "content": "|||IP_ADDRESS|||",
+      "lstrip": false,
+      "normalized": true,
+      "rstrip": false,
+      "single_word": false,
+      "special": false
+    },
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+      "lstrip": false,
+      "normalized": false,
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+      "single_word": false,
+      "special": true
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