PLI Datasets Datasets related to Protein-Ligand (small molecule) Interactions Synthyra/PLINDER Viewer • Updated Jan 23 • 428k • 19 Synthyra/PLINDER-selfies Viewer • Updated Jan 23 • 94.3k • 11
Speedrunning ESM2 Synthyra/esm150_speedrun_100000_steps 0.1B • Updated Dec 31, 2024 • 2 Synthyra/esm150_speedrun_20000_steps 0.1B • Updated Dec 29, 2024 • 3
PPI Datasets Datasets related to protein-protein interaction, binding sites, or binding affinity. Synthyra/NEGATOME Viewer • Updated Jan 15 • 24.2k • 56 • 1 Synthyra/StringDBSeqsv12 Viewer • Updated Dec 5, 2024 • 59.3M • 69 • 1 Synthyra/Stringv12ModelOrgSeqs Viewer • Updated Apr 29, 2025 • 361k • 30 Synthyra/homodimer_benchmark Viewer • Updated Dec 13, 2024 • 164k • 8
FastPLMs Synthyra/ESMplusplus_small Fill-Mask • 0.3B • Updated 5 days ago • 26.9k • 18 Synthyra/ESMplusplus_large Fill-Mask • 0.6B • Updated 5 days ago • 40.4k • 17 Synthyra/FastESM2_650 Fill-Mask • 0.7B • Updated 6 days ago • 158 • 3 Synthyra/ANKH_base 0.5B • Updated 7 days ago • 89
PLI Datasets Datasets related to Protein-Ligand (small molecule) Interactions Synthyra/PLINDER Viewer • Updated Jan 23 • 428k • 19 Synthyra/PLINDER-selfies Viewer • Updated Jan 23 • 94.3k • 11
PPI Datasets Datasets related to protein-protein interaction, binding sites, or binding affinity. Synthyra/NEGATOME Viewer • Updated Jan 15 • 24.2k • 56 • 1 Synthyra/StringDBSeqsv12 Viewer • Updated Dec 5, 2024 • 59.3M • 69 • 1 Synthyra/Stringv12ModelOrgSeqs Viewer • Updated Apr 29, 2025 • 361k • 30 Synthyra/homodimer_benchmark Viewer • Updated Dec 13, 2024 • 164k • 8
Speedrunning ESM2 Synthyra/esm150_speedrun_100000_steps 0.1B • Updated Dec 31, 2024 • 2 Synthyra/esm150_speedrun_20000_steps 0.1B • Updated Dec 29, 2024 • 3
FastPLMs Synthyra/ESMplusplus_small Fill-Mask • 0.3B • Updated 5 days ago • 26.9k • 18 Synthyra/ESMplusplus_large Fill-Mask • 0.6B • Updated 5 days ago • 40.4k • 17 Synthyra/FastESM2_650 Fill-Mask • 0.7B • Updated 6 days ago • 158 • 3 Synthyra/ANKH_base 0.5B • Updated 7 days ago • 89
