Add files using upload-large-folder tool

.gitattributes

@@ -33,3 +33,7 @@ saved_model/**/* filter=lfs diff=lfs merge=lfs -text
 *.zip filter=lfs diff=lfs merge=lfs -text
 *.zst filter=lfs diff=lfs merge=lfs -text
 *tfevents* filter=lfs diff=lfs merge=lfs -text
+software-BERT_CRF/model_weights.hdf5 filter=lfs diff=lfs merge=lfs -text
+context_bert/model_weights.hdf5 filter=lfs diff=lfs merge=lfs -text
+software-BERT/model_weights.hdf5 filter=lfs diff=lfs merge=lfs -text
+context_used_bert/model_weights.hdf5 filter=lfs diff=lfs merge=lfs -text

README.md

@@ -0,0 +1,16 @@
+---
+license: apache-2.0
+---
+
+# Softcite models developed in the SoFAIR EU Project
+The goal of this GROBID module is to recognize any software mentions in scholar textual documents, publisher XML and PDF. 
+It uses as training data the Softcite Dataset developed by James Howison Lab at the University of Texas at Austin. 
+This annotated corpus and the present software text mining component have been developed supported by a grant from the Alfred P. Sloan foundation to improve credit for research software.
+
+Github: https://github.com/softcite/software-mentions
+
+Original author: Patrice Lopez
+Current authors: SoFAIR Project
+
+
+These models have been migrated from AWS S3. 

context_bert/config.json

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+    "transformer_name": "michiyasunaga/LinkBERT-base"
+}

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context_bert/transformer-config.json

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context_bert/transformer-tokenizer/special_tokens_map.json

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context_bert/transformer-tokenizer/tokenizer_config.json

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context_creation_bert/config.json

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context_creation_bert/transformer-config.json

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context_creation_bert/transformer-tokenizer/special_tokens_map.json

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context_creation_bert/transformer-tokenizer/tokenizer_config.json

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context_shared_bert/config.json

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context_shared_bert/transformer-config.json

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context_shared_bert/transformer-tokenizer/special_tokens_map.json

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context_shared_bert/transformer-tokenizer/tokenizer_config.json

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context_used_bert/config.json

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software-BERT/config.json

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software-BERT/transformer-tokenizer/special_tokens_map.json

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software-BERT/transformer-tokenizer/tokenizer_config.json

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software-BERT_CRF/transformer-config.json

@@ -0,0 +1,21 @@
+{
+  "_name_or_path": "/srv/storage/[email protected]/lfoppiano/embeddings/scibert_scivocab_cased",
+  "attention_probs_dropout_prob": 0.1,
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+  "position_embedding_type": "absolute",
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+  "vocab_size": 31116
+}

software-BERT_CRF/transformer-tokenizer/special_tokens_map.json

@@ -0,0 +1,7 @@
+{
+  "cls_token": "[CLS]",
+  "mask_token": "[MASK]",
+  "pad_token": "[PAD]",
+  "sep_token": "[SEP]",
+  "unk_token": "[UNK]"
+}

software-BERT_CRF/transformer-tokenizer/tokenizer_config.json

@@ -0,0 +1,17 @@
+{
+  "add_prefix_space": true,
+  "clean_up_tokenization_spaces": true,
+  "cls_token": "[CLS]",
+  "do_basic_tokenize": true,
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+  "tokenize_chinese_chars": true,
+  "tokenizer_class": "BertTokenizer",
+  "unk_token": "[UNK]"
+}

software-type-BERT_CRF/config.json

@@ -0,0 +1,38 @@
+{
+    "model_name": "software-type-BERT_CRF",
+    "architecture": "BERT_CRF",
+    "embeddings_name": null,
+    "char_vocab_size": 296,
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+    "use_chain_crf": false,
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+    "transformer_name": "michiyasunaga/LinkBERT-basecased",
+    "use_ELMo": false,
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+}

software-type-BERT_CRF/preprocessor.json

@@ -0,0 +1,343 @@
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+}

software-type-BERT_CRF/transformer-config.json

@@ -0,0 +1,25 @@
+{
+  "_name_or_path": "/srv/storage/[email protected]/lfoppiano/embeddings/LinkBERT-base",
+  "architectures": [
+    "BertModel"
+  ],
+  "attention_probs_dropout_prob": 0.1,
+  "classifier_dropout": null,
+  "gradient_checkpointing": false,
+  "hidden_act": "gelu",
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+  "hidden_size": 768,
+  "initializer_range": 0.02,
+  "intermediate_size": 3072,
+  "layer_norm_eps": 1e-12,
+  "max_position_embeddings": 512,
+  "model_type": "bert",
+  "num_attention_heads": 12,
+  "num_hidden_layers": 12,
+  "pad_token_id": 0,
+  "position_embedding_type": "absolute",
+  "transformers_version": "4.33.2",
+  "type_vocab_size": 2,
+  "use_cache": true,
+  "vocab_size": 28996
+}

software-type-BERT_CRF/transformer-tokenizer/special_tokens_map.json

@@ -0,0 +1,7 @@
+{
+  "cls_token": "[CLS]",
+  "mask_token": "[MASK]",
+  "pad_token": "[PAD]",
+  "sep_token": "[SEP]",
+  "unk_token": "[UNK]"
+}

software-type-BERT_CRF/transformer-tokenizer/tokenizer_config.json

@@ -0,0 +1,15 @@
+{
+  "add_prefix_space": true,
+  "clean_up_tokenization_spaces": true,
+  "cls_token": "[CLS]",
+  "do_lower_case": false,
+  "mask_token": "[MASK]",
+  "max_length": 512,
+  "model_max_length": 512,
+  "pad_token": "[PAD]",
+  "sep_token": "[SEP]",
+  "strip_accents": null,
+  "tokenize_chinese_chars": true,
+  "tokenizer_class": "BertTokenizer",
+  "unk_token": "[UNK]"
+}