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Create README.md
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README.md
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---
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datasets:
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- EvaKlimentova/knots_AF
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---
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# M1 - finetuned ProtBert-BFD
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The model is trained on [knots_AF dataset](https://huggingface.co/datasets/EvaKlimentova/knots_AF)
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The accuracy on the test set is ~ 0.9848
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| M1 ProtBert BFD | Dataset size | Unknotted set size | Accuracy | TPR | TNR |
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|:----------------------------:|:------------:|:------------------:|:--------:|:------:|:-------:|
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| All | 39412 | 19718 | 0.9848 | 0.9871 | 0.9826 |
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| SPOUT | 7371 | 550 | 0.9905 | 0.9963 | 0.9182 |
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| TDD | 612 | 24 | 0.9918 | 0.9966 | 0.8750 |
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| DUF | 736 | 429 | 0.97905 | 0.9826 | 0.9767 |
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| AdoMet synthase | 1794 | 240 | 0.9939 | 0.9968 | 0.9750 |
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| Carbonic anhydrase | 1531 | 539 | 0.9556 | 0.9718 | 0.9258 |
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| UCH | 477 | 125 | 0.9099 | 0.9631 | 0.7600 |
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| ATCase/OTCase | 3799 | 3352 | 0.9992 | 0.9955 | 0.9997 |
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| ribosomal-mitochondrial | 147 | 41 | 0.8912 | 0.9906 | 0.63412 |
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| membrane | 8309 | 1577 | 0.9791 | 0.9895 | 0.9347 |
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| VIT | 14347 | 12639 | 0.9873 | 0.9415 | 0.9935 |
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| biosynthesis of lantibiotics | 392 | 286 | 0.9719 | 0.9811 | 0.9685 |
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| PGluconate dehydrogenase | 1 | 0 | 1.0 | 1.0 | |
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