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Amelie Schreiber

AmelieSchreiber

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https://mastodon.social/@OctoNoodle

amelie_iska
Amelie-Schreiber

AI & ML interests

Diffusion and flow matching models for proteins, small molecules, DNA, and RNA, protein language models, machine translation, equivariant attention mechanisms, LoRA, and QLoRA.

Recent Activity

liked a model 18 days ago

microsoft/NatureLM-8x7B-Inst

updated a model 21 days ago

AmelieSchreiber/LucaOne

published a model 21 days ago

AmelieSchreiber/LucaOne

View all activity

Organizations

AmelieSchreiber 's collections 6

ESMBind (ESMB) for Protein Binding Sites

ESMBind (or ESMB) are LoRA finetuned ESM-2 models for predicting general binding sites and active sites of proteins based on sequence alone.

AmelieSchreiber/esm2_t12_35M_lora_binding_sites_770K_v1

Updated Sep 29, 2023 • 9
AmelieSchreiber/esm2_t12_35M_lora_binding_sites_v2_cp3

Token Classification • Updated Sep 22, 2023 • 25 • 6
AmelieSchreiber/esm2_t12_35M_lora_binding_sites_v2_cp2

Token Classification • Updated Sep 15, 2023 • 7
AmelieSchreiber/esm2_t12_35M_lora_binding_sites_v2_cp1

Token Classification • Updated Sep 23, 2023 • 4

ESM-PTM: ESM-2 for Predicting PTM

This is a collection of LoRA and QLoRA finetuned ESM-2 models and datasets for predicting post translational modification sites on proteins.

AmelieSchreiber/esm2_t30_150M_ptm_qlora_2100K_1000

Updated Oct 24, 2023
AmelieSchreiber/esm2_t30_150M_ptm_qlora_2100K

Updated Oct 19, 2023 • 3
AmelieSchreiber/esm2_t6_8M_ptm_lora_500K

Updated Oct 11, 2023
AmelieSchreiber/esm2_t12_35M_ptm_lora_2100K

Token Classification • Updated Oct 11, 2023 • 4

Biomedical

epfl-llm/meditron-70b

Text Generation • 69B • Updated Dec 7, 2023 • 342 • 240
Running

22

22

ESM-Variants

🌖

Visualize amino acid changes in protein sequences interactively
Runtime error

5

5

Variant Effects LLR

🐢
Sleeping

106

106

PROTEIN GENERATOR

🧪

Generate protein structures from sequences or lengths

QBind: QLoRA for ESM-2 Binding Sites Prediction

QLoRAs for various ESM-2 models for predicting binding sites of protein sequences.

AmelieSchreiber/esm2_t33_650M_qlora_binding_16M

Updated Nov 21, 2023 • 6
AmelieSchreiber/esm2_t33_650M_qlora_binding_12M

Updated Nov 1, 2023 • 1
AmelieSchreiber/esm2_t6_8m_qlora_binding_sites_v0

Updated Oct 4, 2023 • 9 • 1
AmelieSchreiber/esm2_t12_35M_qlora_binding_sites_v0

Updated Sep 29, 2023 • 3

ESM-Interact

ESM-2 models finetuned for generating peptide binders and predicting protein-protein interactions using MLM capabilities. None of the models work well

AmelieSchreiber/PepMLM_v0

0.7B • Updated Nov 22, 2023
AmelieSchreiber/esm_interact

Fill-Mask • 0.1B • Updated Nov 22, 2023 • 7 • 3
AmelieSchreiber/esm_mlmppi_ph50

Fill-Mask • 0.7B • Updated Dec 14, 2023 • 11
AmelieSchreiber/esm_mlmppi_ph50_v3

Fill-Mask • 0.7B • Updated Dec 16, 2023 • 8

LLMs

KnutJaegersberg/Tess-M-34B-2bit

Text Generation • 2B • Updated Jan 3, 2024 • 12 • 6